Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653350 | XP_013457050.1 | 97.156 | 211 | 5 | 1 | 1 | 211 | 1 | 210 | 1.23e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653350 | sp|Q338B0|HFA2C_ORYSJ | 38.073 | 218 | 111 | 6 | 2 | 202 | 6 | 216 | 6.92e-38 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653350 | G7ZZ89 | 97.156 | 211 | 5 | 1 | 1 | 211 | 1 | 210 | 5.86e-148 | 419 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0653350 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0653350 | Msa0695780 | 0.811204 | 7.869707e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653350 | MtrunA17_Chr4g0047421 | 97.156 | 211 | 5 | 1 | 1 | 211 | 1 | 210 | 1.13e-151 | 419 |
| Msa0653350 | MtrunA17_Chr5g0397881 | 38.424 | 203 | 87 | 4 | 30 | 199 | 21 | 218 | 1.97e-40 | 141 |
| Msa0653350 | MtrunA17_Chr7g0257331 | 44.886 | 176 | 76 | 4 | 31 | 199 | 20 | 181 | 2.25e-40 | 137 |
| Msa0653350 | MtrunA17_Chr1g0203601 | 37.073 | 205 | 102 | 4 | 17 | 203 | 4 | 199 | 1.85e-37 | 132 |
| Msa0653350 | MtrunA17_Chr1g0185131 | 41.899 | 179 | 84 | 4 | 31 | 202 | 30 | 195 | 2.68e-36 | 130 |
| Msa0653350 | MtrunA17_Chr5g0441531 | 39.106 | 179 | 96 | 3 | 30 | 200 | 22 | 195 | 5.87e-36 | 127 |
| Msa0653350 | MtrunA17_Chr3g0134031 | 35.814 | 215 | 89 | 3 | 30 | 200 | 21 | 230 | 5.24e-35 | 127 |
| Msa0653350 | MtrunA17_Chr6g0472421 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 7.30e-35 | 126 |
| Msa0653350 | MtrunA17_Chr6g0467041 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 1.73e-34 | 125 |
| Msa0653350 | MtrunA17_Chr1g0204741 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 4.61e-34 | 124 |
| Msa0653350 | MtrunA17_Chr5g0410881 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 1.56e-33 | 125 |
| Msa0653350 | MtrunA17_Chr5g0402291 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 1.86e-33 | 121 |
| Msa0653350 | MtrunA17_Chr8g0375041 | 37.500 | 184 | 107 | 3 | 30 | 210 | 6 | 184 | 2.10e-32 | 117 |
| Msa0653350 | MtrunA17_Chr2g0330821 | 40.449 | 178 | 90 | 5 | 31 | 207 | 77 | 239 | 2.75e-32 | 119 |
| Msa0653350 | MtrunA17_Chr7g0260331 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 3.94e-32 | 119 |
| Msa0653350 | MtrunA17_Chr4g0071051 | 58.163 | 98 | 36 | 2 | 31 | 128 | 99 | 191 | 5.81e-32 | 120 |
| Msa0653350 | MtrunA17_Chr4g0039891 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 2.63e-31 | 119 |
| Msa0653350 | MtrunA17_Chr8g0378061 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 5.83e-31 | 118 |
| Msa0653350 | MtrunA17_Chr3g0135831 | 38.953 | 172 | 94 | 4 | 31 | 199 | 44 | 207 | 2.77e-30 | 114 |
| Msa0653350 | MtrunA17_Chr8g0379701 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 4.01e-30 | 114 |
| Msa0653350 | MtrunA17_Chr2g0284481 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 1.14e-27 | 107 |
| Msa0653350 | MtrunA17_Chr6g0485571 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 1.72e-27 | 106 |
| Msa0653350 | MtrunA17_Chr8g0392001 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 9.38e-27 | 105 |
| Msa0653350 | MtrunA17_Chr1g0179321 | 56.061 | 66 | 24 | 1 | 32 | 97 | 48 | 108 | 1.29e-20 | 83.2 |
| Msa0653350 | MtrunA17_Chr4g0023771 | 52.381 | 63 | 25 | 1 | 33 | 95 | 15 | 72 | 2.50e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653350 | AT5G62020.1 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 4.20e-37 | 131 |
| Msa0653350 | AT4G36990.1 | 35.885 | 209 | 107 | 3 | 22 | 211 | 3 | 203 | 1.81e-36 | 129 |
| Msa0653350 | AT2G41690.1 | 38.462 | 195 | 99 | 4 | 21 | 199 | 28 | 217 | 1.89e-35 | 125 |
| Msa0653350 | AT4G17750.1 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 9.42e-35 | 129 |
| Msa0653350 | AT1G46264.1 | 54.455 | 101 | 41 | 1 | 30 | 130 | 31 | 126 | 2.99e-34 | 125 |
| Msa0653350 | AT4G11660.1 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 1.69e-33 | 123 |
| Msa0653350 | AT4G13980.1 | 38.122 | 181 | 89 | 3 | 34 | 211 | 24 | 184 | 2.65e-33 | 124 |
| Msa0653350 | AT5G03720.2 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.79e-33 | 122 |
| Msa0653350 | AT5G03720.1 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.79e-33 | 122 |
| Msa0653350 | AT1G32330.1 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.21e-33 | 123 |
| Msa0653350 | AT5G43840.1 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 8.31e-33 | 119 |
| Msa0653350 | AT1G32330.2 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.55e-33 | 123 |
| Msa0653350 | AT3G22830.1 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.48e-32 | 121 |
| Msa0653350 | AT3G63350.1 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 7.23e-32 | 117 |
| Msa0653350 | AT5G16820.1 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 7.99e-32 | 120 |
| Msa0653350 | AT5G16820.2 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 7.99e-32 | 120 |
| Msa0653350 | AT2G26150.1 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.01e-31 | 117 |
| Msa0653350 | AT2G26150.4 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.01e-31 | 117 |
| Msa0653350 | AT3G51910.1 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.61e-30 | 113 |
| Msa0653350 | AT3G02990.1 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 6.72e-29 | 112 |
| Msa0653350 | AT3G24520.1 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.41e-28 | 109 |
| Msa0653350 | AT5G54070.1 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 2.02e-28 | 109 |
| Msa0653350 | AT4G18880.1 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 1.27e-25 | 102 |
| Msa0653350 | AT5G45710.3 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.10e-25 | 100 |
| Msa0653350 | AT5G45710.1 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.10e-25 | 100 |
| Msa0653350 | AT1G67970.1 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 4.55e-24 | 98.2 |
| Msa0653350 | AT4G18870.1 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 8.64e-15 | 71.6 |
| Msa0653350 | AT4G18870.1 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 2.03e-12 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4_3:-61365112 | None:intergenic |
| TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4_3:-61363669 | None:intergenic |
| ACTCTAACCTCTCCTTCTTT+AGG | 0.266225 | 4_3:-61365013 | None:intergenic |
| AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4_3:-61363513 | None:intergenic |
| TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4_3:+61363536 | Msa0653350:CDS |
| AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4_3:+61364838 | Msa0653350:CDS |
| GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4_3:+61363499 | Msa0653350:CDS |
| CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4_3:+61364830 | Msa0653350:CDS |
| CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4_3:-61363506 | None:intergenic |
| AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4_3:+61364802 | Msa0653350:CDS |
| TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4_3:-61363531 | None:intergenic |
| ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4_3:+61365105 | Msa0653350:CDS |
| GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4_3:+61365061 | Msa0653350:CDS |
| GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4_3:+61365082 | Msa0653350:CDS |
| GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4_3:-61364909 | None:intergenic |
| CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4_3:+61364831 | Msa0653350:CDS |
| ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4_3:+61363539 | Msa0653350:CDS |
| GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4_3:-61363525 | None:intergenic |
| GTGAGCTCTGAGAATTCAGC+TGG | 0.504092 | 4_3:-61363642 | None:intergenic |
| ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4_3:-61363547 | None:intergenic |
| GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4_3:+61364803 | Msa0653350:CDS |
| TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4_3:+61363603 | Msa0653350:CDS |
| AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4_3:-61363505 | None:intergenic |
| AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4_3:-61364897 | None:intergenic |
| TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4_3:+61364977 | Msa0653350:CDS |
| AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4_3:+61364848 | Msa0653350:CDS |
| ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4_3:+61363597 | Msa0653350:CDS |
| GGAGAACAAGAACCTAAAGA+AGG | 0.564741 | 4_3:+61365001 | Msa0653350:CDS |
| ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4_3:+61363546 | Msa0653350:CDS |
| GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4_3:+61363567 | Msa0653350:CDS |
| AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4_3:+61363444 | Msa0653350:CDS |
| ACAAGAACCTAAAGAAGGAG+AGG | 0.585621 | 4_3:+61365006 | Msa0653350:CDS |
| ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4_3:+61363586 | Msa0653350:CDS |
| AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4_3:+61365040 | Msa0653350:CDS |
| TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4_3:+61363431 | None:intergenic |
| GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4_3:-61363664 | None:intergenic |
| ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4_3:+61364862 | Msa0653350:CDS |
| ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4_3:+61364914 | Msa0653350:CDS |
| TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4_3:+61363555 | Msa0653350:CDS |
| TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4_3:-61363524 | None:intergenic |
| CAATCATGAACTACTCATGG+AGG | 0.704767 | 4_3:+61364980 | Msa0653350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_3:61363927-61363946 | None:intergenic | 15.0% |
| !! | AAAAATTCTTTGAATTACTT+GGG | + | chr4_3:61364103-61364122 | Msa0653350:intron | 15.0% |
| !!! | TTGCTTTTTTTTTTTTTTGA+AGG | + | chr4_3:61364560-61364579 | Msa0653350:intron | 15.0% |
| !! | ATTAATTAATTACTTCAACA+GGG | + | chr4_3:61364774-61364793 | Msa0653350:intron | 15.0% |
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_3:61363927-61363946 | None:intergenic | 15.0% |
| !! | AAAAATTCTTTGAATTACTT+GGG | + | chr4_3:61364103-61364122 | Msa0653350:intron | 15.0% |
| !!! | TTGCTTTTTTTTTTTTTTGA+AGG | + | chr4_3:61364560-61364579 | Msa0653350:intron | 15.0% |
| !! | ATTAATTAATTACTTCAACA+GGG | + | chr4_3:61364774-61364793 | Msa0653350:intron | 15.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_3:61363807-61363826 | Msa0653350:intron | 20.0% |
| !! | ATTGTTCAATACTTTCTATT+AGG | - | chr4_3:61363847-61363866 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATTGAACAA+TGG | + | chr4_3:61363846-61363865 | Msa0653350:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_3:61363964-61363983 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_3:61364003-61364022 | Msa0653350:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_3:61364004-61364023 | Msa0653350:intron | 20.0% |
| !!! | AGTAATTCAAAGAATTTTTG+AGG | - | chr4_3:61364102-61364121 | None:intergenic | 20.0% |
| !! | CAAAAATTCTTTGAATTACT+TGG | + | chr4_3:61364102-61364121 | Msa0653350:intron | 20.0% |
| !! | AAAATTCTTTGAATTACTTG+GGG | + | chr4_3:61364104-61364123 | Msa0653350:intron | 20.0% |
| !! | ATGTATATATTAACACAACA+TGG | + | chr4_3:61364699-61364718 | Msa0653350:intron | 20.0% |
| !! | CATTAATTAATTACTTCAAC+AGG | + | chr4_3:61364773-61364792 | Msa0653350:intron | 20.0% |
| !! | TTAATTAATTACTTCAACAG+GGG | + | chr4_3:61364775-61364794 | Msa0653350:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_3:61364802-61364821 | Msa0653350:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_3:61364803-61364822 | Msa0653350:CDS | 20.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_3:61363807-61363826 | Msa0653350:intron | 20.0% |
| !! | ATTGTTCAATACTTTCTATT+AGG | - | chr4_3:61363847-61363866 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATTGAACAA+TGG | + | chr4_3:61363846-61363865 | Msa0653350:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_3:61363964-61363983 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_3:61364003-61364022 | Msa0653350:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_3:61364004-61364023 | Msa0653350:intron | 20.0% |
| !!! | AGTAATTCAAAGAATTTTTG+AGG | - | chr4_3:61364102-61364121 | None:intergenic | 20.0% |
| !! | CAAAAATTCTTTGAATTACT+TGG | + | chr4_3:61364102-61364121 | Msa0653350:intron | 20.0% |
| !! | AAAATTCTTTGAATTACTTG+GGG | + | chr4_3:61364104-61364123 | Msa0653350:intron | 20.0% |
| !! | ATGTATATATTAACACAACA+TGG | + | chr4_3:61364699-61364718 | Msa0653350:intron | 20.0% |
| !! | CATTAATTAATTACTTCAAC+AGG | + | chr4_3:61364773-61364792 | Msa0653350:intron | 20.0% |
| !! | TTAATTAATTACTTCAACAG+GGG | + | chr4_3:61364775-61364794 | Msa0653350:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_3:61364802-61364821 | Msa0653350:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_3:61364803-61364822 | Msa0653350:CDS | 20.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_3:61363477-61363496 | Msa0653350:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_3:61363672-61363691 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_3:61363884-61363903 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_3:61363954-61363973 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_3:61364058-61364077 | None:intergenic | 25.0% |
| ! | AAATTCTTTGAATTACTTGG+GGG | + | chr4_3:61364105-61364124 | Msa0653350:intron | 25.0% |
| ! | GATGGTTCAAATTTCAAATT+CGG | - | chr4_3:61364255-61364274 | None:intergenic | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_3:61364425-61364444 | Msa0653350:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_3:61364495-61364514 | Msa0653350:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_3:61365115-61365134 | None:intergenic | 25.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_3:61363477-61363496 | Msa0653350:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_3:61363672-61363691 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_3:61363884-61363903 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_3:61363954-61363973 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_3:61364058-61364077 | None:intergenic | 25.0% |
| ! | AAATTCTTTGAATTACTTGG+GGG | + | chr4_3:61364105-61364124 | Msa0653350:intron | 25.0% |
| ! | GATGGTTCAAATTTCAAATT+CGG | - | chr4_3:61364255-61364274 | None:intergenic | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_3:61364425-61364444 | Msa0653350:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_3:61364495-61364514 | Msa0653350:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_3:61365115-61365134 | None:intergenic | 25.0% |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_3:61363534-61363553 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_3:61363536-61363555 | Msa0653350:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_3:61363586-61363605 | Msa0653350:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_3:61363739-61363758 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_3:61364037-61364056 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_3:61364056-61364075 | Msa0653350:intron | 30.0% |
| !! | AAGAATTTTTGAGGAAGCTA+GGG | - | chr4_3:61364093-61364112 | None:intergenic | 30.0% |
| !! | AAAGAATTTTTGAGGAAGCT+AGG | - | chr4_3:61364094-61364113 | None:intergenic | 30.0% |
| AATTCATGCAGTCAAAACAT+CGG | + | chr4_3:61364157-61364176 | Msa0653350:intron | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_3:61364273-61364292 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_3:61364277-61364296 | None:intergenic | 30.0% |
| !! | CTACTACAAAGTAATGGATT+TGG | - | chr4_3:61364331-61364350 | None:intergenic | 30.0% |
| AAAGAGCTACTACAAAGTAA+TGG | - | chr4_3:61364337-61364356 | None:intergenic | 30.0% | |
| ATTACTTTGTAGTAGCTCTT+TGG | + | chr4_3:61364336-61364355 | Msa0653350:intron | 30.0% | |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_3:61364502-61364521 | Msa0653350:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_3:61364503-61364522 | Msa0653350:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_3:61364831-61364850 | Msa0653350:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_3:61364862-61364881 | Msa0653350:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_3:61365105-61365124 | Msa0653350:CDS | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_3:61363534-61363553 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_3:61363536-61363555 | Msa0653350:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_3:61363586-61363605 | Msa0653350:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_3:61363739-61363758 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_3:61364037-61364056 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_3:61364056-61364075 | Msa0653350:intron | 30.0% |
| !! | AAGAATTTTTGAGGAAGCTA+GGG | - | chr4_3:61364093-61364112 | None:intergenic | 30.0% |
| !! | AAAGAATTTTTGAGGAAGCT+AGG | - | chr4_3:61364094-61364113 | None:intergenic | 30.0% |
| AATTCATGCAGTCAAAACAT+CGG | + | chr4_3:61364157-61364176 | Msa0653350:intron | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_3:61364273-61364292 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_3:61364277-61364296 | None:intergenic | 30.0% |
| !! | CTACTACAAAGTAATGGATT+TGG | - | chr4_3:61364331-61364350 | None:intergenic | 30.0% |
| AAAGAGCTACTACAAAGTAA+TGG | - | chr4_3:61364337-61364356 | None:intergenic | 30.0% | |
| ATTACTTTGTAGTAGCTCTT+TGG | + | chr4_3:61364336-61364355 | Msa0653350:intron | 30.0% | |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_3:61364502-61364521 | Msa0653350:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_3:61364503-61364522 | Msa0653350:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_3:61364831-61364850 | Msa0653350:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_3:61364862-61364881 | Msa0653350:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_3:61365105-61365124 | Msa0653350:CDS | 30.0% | |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_3:61363444-61363463 | Msa0653350:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_3:61363527-61363546 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_3:61363539-61363558 | Msa0653350:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_3:61363597-61363616 | Msa0653350:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_3:61363603-61363622 | Msa0653350:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_3:61363616-61363635 | Msa0653350:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_3:61363667-61363686 | None:intergenic | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_3:61364287-61364306 | Msa0653350:intron | 35.0% | |
| !! | GTAATGGATTTGGATTTGCT+GGG | - | chr4_3:61364321-61364340 | None:intergenic | 35.0% |
| !! | AGTAATGGATTTGGATTTGC+TGG | - | chr4_3:61364322-61364341 | None:intergenic | 35.0% |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_3:61364398-61364417 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_3:61364399-61364418 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_3:61364399-61364418 | Msa0653350:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_3:61364471-61364490 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_3:61364833-61364852 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_3:61364830-61364849 | Msa0653350:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_3:61364838-61364857 | Msa0653350:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_3:61364912-61364931 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_3:61364914-61364933 | Msa0653350:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_3:61364977-61364996 | Msa0653350:CDS | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_3:61365040-61365059 | Msa0653350:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_3:61365112-61365131 | None:intergenic | 35.0% |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_3:61363444-61363463 | Msa0653350:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_3:61363527-61363546 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_3:61363539-61363558 | Msa0653350:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_3:61363597-61363616 | Msa0653350:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_3:61363603-61363622 | Msa0653350:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_3:61363616-61363635 | Msa0653350:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_3:61363667-61363686 | None:intergenic | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_3:61364287-61364306 | Msa0653350:intron | 35.0% | |
| !! | GTAATGGATTTGGATTTGCT+GGG | - | chr4_3:61364321-61364340 | None:intergenic | 35.0% |
| !! | AGTAATGGATTTGGATTTGC+TGG | - | chr4_3:61364322-61364341 | None:intergenic | 35.0% |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_3:61364398-61364417 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_3:61364399-61364418 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_3:61364399-61364418 | Msa0653350:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_3:61364471-61364490 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_3:61364833-61364852 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_3:61364830-61364849 | Msa0653350:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_3:61364838-61364857 | Msa0653350:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_3:61364912-61364931 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_3:61364914-61364933 | Msa0653350:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_3:61364977-61364996 | Msa0653350:CDS | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_3:61365040-61365059 | Msa0653350:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_3:61365112-61365131 | None:intergenic | 35.0% |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_3:61363528-61363547 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_3:61363546-61363565 | Msa0653350:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_3:61363550-61363569 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_3:61363735-61363754 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_3:61363876-61363895 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_3:61363873-61363892 | Msa0653350:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_3:61364110-61364129 | Msa0653350:intron | 40.0% | |
| !!! | GTTTTGACTGCATGAATTCG+TGG | - | chr4_3:61364155-61364174 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_3:61364472-61364491 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_3:61364900-61364919 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_3:61364980-61364999 | Msa0653350:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_3:61365001-61365020 | Msa0653350:CDS | 40.0% | |
| ACAAGAACCTAAAGAAGGAG+AGG | + | chr4_3:61365006-61365025 | Msa0653350:CDS | 40.0% | |
| ACTCTAACCTCTCCTTCTTT+AGG | - | chr4_3:61365016-61365035 | None:intergenic | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_3:61365061-61365080 | Msa0653350:CDS | 40.0% | |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_3:61363528-61363547 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_3:61363546-61363565 | Msa0653350:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_3:61363550-61363569 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_3:61363735-61363754 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_3:61363876-61363895 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_3:61363873-61363892 | Msa0653350:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_3:61364110-61364129 | Msa0653350:intron | 40.0% | |
| !!! | GTTTTGACTGCATGAATTCG+TGG | - | chr4_3:61364155-61364174 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_3:61364472-61364491 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_3:61364900-61364919 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_3:61364980-61364999 | Msa0653350:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_3:61365001-61365020 | Msa0653350:CDS | 40.0% | |
| ACAAGAACCTAAAGAAGGAG+AGG | + | chr4_3:61365006-61365025 | Msa0653350:CDS | 40.0% | |
| ACTCTAACCTCTCCTTCTTT+AGG | - | chr4_3:61365016-61365035 | None:intergenic | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_3:61365061-61365080 | Msa0653350:CDS | 40.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_3:61363499-61363518 | Msa0653350:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_3:61363508-61363527 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_3:61363555-61363574 | Msa0653350:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_3:61363567-61363586 | Msa0653350:CDS | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_3:61364848-61364867 | Msa0653350:CDS | 45.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_3:61363499-61363518 | Msa0653350:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_3:61363508-61363527 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_3:61363555-61363574 | Msa0653350:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_3:61363567-61363586 | Msa0653350:CDS | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_3:61364848-61364867 | Msa0653350:CDS | 45.0% | |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_3:61363509-61363528 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_3:61363516-61363535 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_3:61363645-61363664 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_3:61364395-61364414 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_3:61365082-61365101 | Msa0653350:CDS | 50.0% |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_3:61363509-61363528 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_3:61363516-61363535 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_3:61363645-61363664 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_3:61364395-61364414 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_3:61365082-61365101 | Msa0653350:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 61363435 | 61365139 | 61363435 | ID=Msa0653350;Name=Msa0653350 |
| chr4_3 | mRNA | 61363435 | 61365139 | 61363435 | ID=Msa0653350-mRNA-1;Parent=Msa0653350;Name=Msa0653350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|211 |
| chr4_3 | exon | 61363435 | 61363725 | 61363435 | ID=Msa0653350-mRNA-1:exon:16770;Parent=Msa0653350-mRNA-1 |
| chr4_3 | exon | 61364795 | 61365139 | 61364795 | ID=Msa0653350-mRNA-1:exon:16771;Parent=Msa0653350-mRNA-1 |
| chr4_3 | CDS | 61363435 | 61363725 | 61363435 | ID=Msa0653350-mRNA-1:cds;Parent=Msa0653350-mRNA-1 |
| chr4_3 | CDS | 61364795 | 61365139 | 61364795 | ID=Msa0653350-mRNA-1:cds;Parent=Msa0653350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
