Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695780 | XP_013457050.1 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 1.86e-146 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695780 | sp|Q338B0|HFA2C_ORYSJ | 37.615 | 218 | 112 | 6 | 2 | 202 | 6 | 216 | 1.07e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695780 | G7ZZ89 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 8.90e-147 | 416 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0695780 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0653350 | Msa0695780 | 0.811204 | 7.869707e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695780 | MtrunA17_Chr4g0047421 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 1.71e-150 | 416 |
| Msa0695780 | MtrunA17_Chr7g0257331 | 44.318 | 176 | 77 | 4 | 31 | 199 | 20 | 181 | 3.46e-39 | 134 |
| Msa0695780 | MtrunA17_Chr5g0397881 | 37.931 | 203 | 88 | 4 | 30 | 199 | 21 | 218 | 3.59e-39 | 137 |
| Msa0695780 | MtrunA17_Chr1g0203601 | 36.585 | 205 | 103 | 4 | 17 | 203 | 4 | 199 | 3.41e-36 | 129 |
| Msa0695780 | MtrunA17_Chr1g0185131 | 41.341 | 179 | 85 | 4 | 31 | 202 | 30 | 195 | 4.25e-35 | 127 |
| Msa0695780 | MtrunA17_Chr5g0441531 | 38.547 | 179 | 97 | 3 | 30 | 200 | 22 | 195 | 1.22e-34 | 123 |
| Msa0695780 | MtrunA17_Chr3g0134031 | 35.349 | 215 | 90 | 3 | 30 | 200 | 21 | 230 | 9.29e-34 | 124 |
| Msa0695780 | MtrunA17_Chr6g0472421 | 54.545 | 99 | 40 | 1 | 31 | 129 | 31 | 124 | 1.14e-33 | 123 |
| Msa0695780 | MtrunA17_Chr6g0467041 | 55.102 | 98 | 39 | 1 | 32 | 129 | 21 | 113 | 2.95e-33 | 121 |
| Msa0695780 | MtrunA17_Chr1g0204741 | 42.683 | 164 | 84 | 3 | 31 | 192 | 38 | 193 | 6.62e-33 | 120 |
| Msa0695780 | MtrunA17_Chr5g0402291 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 7.94e-33 | 119 |
| Msa0695780 | MtrunA17_Chr5g0410881 | 54.000 | 100 | 41 | 1 | 30 | 129 | 29 | 123 | 2.79e-32 | 122 |
| Msa0695780 | MtrunA17_Chr8g0375041 | 37.500 | 184 | 107 | 3 | 30 | 210 | 6 | 184 | 1.01e-31 | 115 |
| Msa0695780 | MtrunA17_Chr7g0260331 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 1.48e-31 | 117 |
| Msa0695780 | MtrunA17_Chr2g0330821 | 39.888 | 178 | 91 | 5 | 31 | 207 | 77 | 239 | 5.97e-31 | 116 |
| Msa0695780 | MtrunA17_Chr4g0071051 | 57.143 | 98 | 37 | 2 | 31 | 128 | 99 | 191 | 9.39e-31 | 116 |
| Msa0695780 | MtrunA17_Chr4g0039891 | 54.082 | 98 | 40 | 1 | 33 | 130 | 12 | 104 | 4.78e-30 | 115 |
| Msa0695780 | MtrunA17_Chr8g0378061 | 54.167 | 96 | 39 | 1 | 34 | 129 | 23 | 113 | 8.08e-30 | 115 |
| Msa0695780 | MtrunA17_Chr8g0379701 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 1.15e-29 | 113 |
| Msa0695780 | MtrunA17_Chr3g0135831 | 38.372 | 172 | 95 | 4 | 31 | 199 | 44 | 207 | 4.56e-29 | 111 |
| Msa0695780 | MtrunA17_Chr2g0284481 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 2.02e-28 | 109 |
| Msa0695780 | MtrunA17_Chr8g0392001 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 2.26e-26 | 104 |
| Msa0695780 | MtrunA17_Chr6g0485571 | 48.980 | 98 | 45 | 1 | 32 | 129 | 10 | 102 | 2.88e-26 | 103 |
| Msa0695780 | MtrunA17_Chr1g0179321 | 56.061 | 66 | 24 | 1 | 32 | 97 | 48 | 108 | 1.39e-20 | 82.8 |
| Msa0695780 | MtrunA17_Chr4g0023771 | 52.381 | 63 | 25 | 1 | 33 | 95 | 15 | 72 | 2.60e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0695780 | AT5G62020.1 | 34.518 | 197 | 98 | 3 | 30 | 200 | 20 | 211 | 7.34e-36 | 128 |
| Msa0695780 | AT4G36990.1 | 37.264 | 212 | 100 | 5 | 22 | 211 | 3 | 203 | 7.70e-36 | 127 |
| Msa0695780 | AT2G41690.1 | 37.949 | 195 | 100 | 4 | 21 | 199 | 28 | 217 | 2.74e-34 | 122 |
| Msa0695780 | AT4G17750.1 | 55.446 | 101 | 40 | 1 | 30 | 130 | 49 | 144 | 1.77e-33 | 125 |
| Msa0695780 | AT1G46264.1 | 48.305 | 118 | 56 | 1 | 30 | 147 | 31 | 143 | 5.26e-33 | 121 |
| Msa0695780 | AT4G11660.1 | 53.465 | 101 | 42 | 1 | 30 | 130 | 56 | 151 | 2.70e-32 | 120 |
| Msa0695780 | AT5G03720.2 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 3.38e-32 | 120 |
| Msa0695780 | AT5G03720.1 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 3.38e-32 | 120 |
| Msa0695780 | AT4G13980.1 | 37.569 | 181 | 90 | 3 | 34 | 211 | 24 | 184 | 4.30e-32 | 121 |
| Msa0695780 | AT1G32330.1 | 52.000 | 100 | 43 | 1 | 30 | 129 | 34 | 128 | 1.29e-31 | 120 |
| Msa0695780 | AT1G32330.2 | 52.000 | 100 | 43 | 1 | 30 | 129 | 34 | 128 | 1.31e-31 | 120 |
| Msa0695780 | AT5G43840.1 | 50.450 | 111 | 50 | 1 | 31 | 141 | 17 | 122 | 1.44e-31 | 116 |
| Msa0695780 | AT3G22830.1 | 52.000 | 100 | 43 | 1 | 31 | 130 | 59 | 153 | 2.21e-31 | 118 |
| Msa0695780 | AT3G63350.1 | 54.082 | 98 | 40 | 1 | 31 | 128 | 26 | 118 | 1.30e-30 | 114 |
| Msa0695780 | AT5G16820.1 | 52.427 | 103 | 44 | 1 | 27 | 129 | 21 | 118 | 1.32e-30 | 117 |
| Msa0695780 | AT5G16820.2 | 52.427 | 103 | 44 | 1 | 27 | 129 | 21 | 118 | 1.32e-30 | 117 |
| Msa0695780 | AT2G26150.1 | 39.053 | 169 | 86 | 4 | 31 | 193 | 42 | 199 | 2.79e-30 | 114 |
| Msa0695780 | AT2G26150.4 | 39.053 | 169 | 86 | 4 | 31 | 193 | 42 | 199 | 2.79e-30 | 114 |
| Msa0695780 | AT3G51910.1 | 47.414 | 116 | 54 | 3 | 30 | 144 | 26 | 135 | 2.44e-29 | 110 |
| Msa0695780 | AT3G02990.1 | 51.546 | 97 | 42 | 1 | 33 | 129 | 23 | 114 | 1.40e-27 | 108 |
| Msa0695780 | AT3G24520.1 | 45.370 | 108 | 54 | 1 | 32 | 139 | 16 | 118 | 2.17e-27 | 106 |
| Msa0695780 | AT5G54070.1 | 50.515 | 97 | 43 | 1 | 32 | 128 | 70 | 161 | 3.49e-27 | 105 |
| Msa0695780 | AT4G18880.1 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 2.93e-25 | 102 |
| Msa0695780 | AT5G45710.3 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 1.86e-24 | 99.0 |
| Msa0695780 | AT5G45710.1 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 1.86e-24 | 99.0 |
| Msa0695780 | AT1G67970.1 | 45.455 | 99 | 48 | 2 | 32 | 129 | 18 | 111 | 8.48e-23 | 94.7 |
| Msa0695780 | AT4G18870.1 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 4.62e-14 | 69.7 |
| Msa0695780 | AT4G18870.1 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 1.08e-11 | 63.2 |
Find 40 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATATCATCTAAAATA+TGG | 0.168089 | 4_4:+65474103 | Msa0695780:CDS |
| ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4_4:-65474413 | None:intergenic |
| TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4_4:-65473007 | None:intergenic |
| ACTCTAACCTCTCTTTCTTT+AGG | 0.266225 | 4_4:-65474314 | None:intergenic |
| AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4_4:-65472851 | None:intergenic |
| TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4_4:+65472874 | Msa0695780:CDS |
| AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4_4:+65474139 | Msa0695780:CDS |
| GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4_4:+65472837 | Msa0695780:CDS |
| CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4_4:+65474131 | Msa0695780:CDS |
| CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4_4:-65472844 | None:intergenic |
| TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4_4:-65472869 | None:intergenic |
| GAAAATATCATCTAAAATAT+GGG | 0.436004 | 4_4:+65474104 | Msa0695780:CDS |
| ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4_4:+65474406 | Msa0695780:CDS |
| GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4_4:+65474362 | Msa0695780:CDS |
| GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4_4:+65474383 | Msa0695780:CDS |
| GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4_4:-65474210 | None:intergenic |
| CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4_4:+65474132 | Msa0695780:CDS |
| ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4_4:+65472877 | Msa0695780:CDS |
| GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4_4:-65472863 | None:intergenic |
| GTGAGCTCTGAGAATTCAGC+TGG | 0.504092 | 4_4:-65472980 | None:intergenic |
| ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4_4:-65472885 | None:intergenic |
| TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4_4:+65472941 | Msa0695780:CDS |
| AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4_4:-65472843 | None:intergenic |
| AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4_4:-65474198 | None:intergenic |
| TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4_4:+65474278 | Msa0695780:CDS |
| AAAGGGTTGCAGGCATATGT+TGG | 0.543171 | 4_4:+65474149 | Msa0695780:CDS |
| ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4_4:+65472935 | Msa0695780:CDS |
| ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4_4:+65472884 | Msa0695780:CDS |
| GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4_4:+65472905 | Msa0695780:CDS |
| ACAAGAACCTAAAGAAAGAG+AGG | 0.577303 | 4_4:+65474307 | Msa0695780:CDS |
| AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4_4:+65472782 | Msa0695780:CDS |
| ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4_4:+65472924 | Msa0695780:CDS |
| AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4_4:+65474341 | Msa0695780:CDS |
| TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4_4:+65472769 | None:intergenic |
| GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4_4:-65473002 | None:intergenic |
| ATATGTTGGTTGAAATCAGT+AGG | 0.621529 | 4_4:+65474163 | Msa0695780:CDS |
| ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4_4:+65474215 | Msa0695780:CDS |
| TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4_4:+65472893 | Msa0695780:CDS |
| TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4_4:-65472862 | None:intergenic |
| CAATCATGAACTACTCATGG+AGG | 0.704767 | 4_4:+65474281 | Msa0695780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_4:65473265-65473284 | None:intergenic | 15.0% |
| !!! | AGAAAATATCATCTAAAATA+TGG | + | chr4_4:65474103-65474122 | Msa0695780:CDS | 15.0% |
| !!! | GAAAATATCATCTAAAATAT+GGG | + | chr4_4:65474104-65474123 | Msa0695780:CDS | 15.0% |
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_4:65473265-65473284 | None:intergenic | 15.0% |
| !!! | AGAAAATATCATCTAAAATA+TGG | + | chr4_4:65474103-65474122 | Msa0695780:CDS | 15.0% |
| !!! | GAAAATATCATCTAAAATAT+GGG | + | chr4_4:65474104-65474123 | Msa0695780:CDS | 15.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_4:65473145-65473164 | Msa0695780:intron | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_4:65473185-65473204 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATAGAACAA+TGG | + | chr4_4:65473184-65473203 | Msa0695780:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_4:65473302-65473321 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_4:65473341-65473360 | Msa0695780:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_4:65473342-65473361 | Msa0695780:intron | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_4:65473441-65473460 | Msa0695780:intron | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_4:65474075-65474094 | Msa0695780:intron | 20.0% |
| !!! | AAATCTCACTTTATTTTGAA+TGG | + | chr4_4:65473145-65473164 | Msa0695780:intron | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_4:65473185-65473204 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATAGAACAA+TGG | + | chr4_4:65473184-65473203 | Msa0695780:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_4:65473302-65473321 | None:intergenic | 20.0% |
| !!! | ATTGATATATTGATTCATCA+AGG | + | chr4_4:65473341-65473360 | Msa0695780:intron | 20.0% |
| !!! | TTGATATATTGATTCATCAA+GGG | + | chr4_4:65473342-65473361 | Msa0695780:intron | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_4:65473441-65473460 | Msa0695780:intron | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_4:65474075-65474094 | Msa0695780:intron | 20.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_4:65472815-65472834 | Msa0695780:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_4:65473010-65473029 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_4:65473222-65473241 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_4:65473292-65473311 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_4:65473396-65473415 | None:intergenic | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_4:65473440-65473459 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_4:65473440-65473459 | Msa0695780:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_4:65473442-65473461 | Msa0695780:intron | 25.0% |
| !! | AAAAGACCGAATTTGAAATT+TGG | + | chr4_4:65473584-65473603 | Msa0695780:intron | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_4:65473763-65473782 | Msa0695780:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_4:65473833-65473852 | Msa0695780:intron | 25.0% |
| ! | ATGCATATATTAACACAACA+TGG | + | chr4_4:65474002-65474021 | Msa0695780:intron | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_4:65474074-65474093 | Msa0695780:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_4:65474076-65474095 | Msa0695780:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_4:65474416-65474435 | None:intergenic | 25.0% |
| !! | CAATTTTCTTCTGATCAAAA+TGG | + | chr4_4:65472815-65472834 | Msa0695780:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_4:65473010-65473029 | None:intergenic | 25.0% |
| ! | ATAGTTAACCTTCATATTAG+TGG | - | chr4_4:65473222-65473241 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAAAC+AGG | - | chr4_4:65473292-65473311 | None:intergenic | 25.0% |
| ! | CAGTGAACAAACAAAAAATT+CGG | - | chr4_4:65473396-65473415 | None:intergenic | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_4:65473440-65473459 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_4:65473440-65473459 | Msa0695780:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_4:65473442-65473461 | Msa0695780:intron | 25.0% |
| !! | AAAAGACCGAATTTGAAATT+TGG | + | chr4_4:65473584-65473603 | Msa0695780:intron | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_4:65473763-65473782 | Msa0695780:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_4:65473833-65473852 | Msa0695780:intron | 25.0% |
| ! | ATGCATATATTAACACAACA+TGG | + | chr4_4:65474002-65474021 | Msa0695780:intron | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_4:65474074-65474093 | Msa0695780:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_4:65474076-65474095 | Msa0695780:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_4:65474416-65474435 | None:intergenic | 25.0% |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_4:65472872-65472891 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_4:65472874-65472893 | Msa0695780:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_4:65472924-65472943 | Msa0695780:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_4:65473077-65473096 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_4:65473375-65473394 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_4:65473394-65473413 | Msa0695780:intron | 30.0% |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_4:65473443-65473462 | Msa0695780:intron | 30.0% | |
| GATGGTCCAAATTTCAAATT+CGG | - | chr4_4:65473593-65473612 | None:intergenic | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_4:65473611-65473630 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_4:65473615-65473634 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_4:65473840-65473859 | Msa0695780:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_4:65473841-65473860 | Msa0695780:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_4:65474132-65474151 | Msa0695780:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_4:65474163-65474182 | Msa0695780:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_4:65474406-65474425 | Msa0695780:CDS | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_4:65472872-65472891 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_4:65472874-65472893 | Msa0695780:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_4:65472924-65472943 | Msa0695780:CDS | 30.0% | |
| TTTAGAGAGAAAATCGATCA+AGG | - | chr4_4:65473077-65473096 | None:intergenic | 30.0% | |
| GGAGTAAAAACTCAAAAACT+TGG | - | chr4_4:65473375-65473394 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTGTTTGTTCAC+TGG | + | chr4_4:65473394-65473413 | Msa0695780:intron | 30.0% |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_4:65473443-65473462 | Msa0695780:intron | 30.0% | |
| GATGGTCCAAATTTCAAATT+CGG | - | chr4_4:65473593-65473612 | None:intergenic | 30.0% | |
| TTTGTTGAATCGAAATTGGA+TGG | - | chr4_4:65473611-65473630 | None:intergenic | 30.0% | |
| ! | GTCATTTGTTGAATCGAAAT+TGG | - | chr4_4:65473615-65473634 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_4:65473840-65473859 | Msa0695780:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_4:65473841-65473860 | Msa0695780:intron | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_4:65474132-65474151 | Msa0695780:CDS | 30.0% | |
| ! | ATATGTTGGTTGAAATCAGT+AGG | + | chr4_4:65474163-65474182 | Msa0695780:CDS | 30.0% |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_4:65474406-65474425 | Msa0695780:CDS | 30.0% | |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_4:65472782-65472801 | Msa0695780:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_4:65472865-65472884 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_4:65472877-65472896 | Msa0695780:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_4:65472935-65472954 | Msa0695780:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_4:65472941-65472960 | Msa0695780:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_4:65472954-65472973 | Msa0695780:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_4:65473005-65473024 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_4:65473431-65473450 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_4:65473432-65473451 | None:intergenic | 35.0% |
| AATTCATGCAGTCAAGACAT+CGG | + | chr4_4:65473495-65473514 | Msa0695780:intron | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_4:65473625-65473644 | Msa0695780:intron | 35.0% | |
| !! | CTACTGCAAAGTAATGGATT+TGG | - | chr4_4:65473669-65473688 | None:intergenic | 35.0% |
| AAAGAGCTACTGCAAAGTAA+TGG | - | chr4_4:65473675-65473694 | None:intergenic | 35.0% | |
| ATTACTTTGCAGTAGCTCTT+TGG | + | chr4_4:65473674-65473693 | Msa0695780:intron | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_4:65473736-65473755 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_4:65473737-65473756 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_4:65473737-65473756 | Msa0695780:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_4:65473809-65473828 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_4:65474134-65474153 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_4:65474131-65474150 | Msa0695780:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_4:65474139-65474158 | Msa0695780:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_4:65474213-65474232 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_4:65474215-65474234 | Msa0695780:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_4:65474278-65474297 | Msa0695780:CDS | 35.0% | |
| ACAAGAACCTAAAGAAAGAG+AGG | + | chr4_4:65474307-65474326 | Msa0695780:CDS | 35.0% | |
| ACTCTAACCTCTCTTTCTTT+AGG | - | chr4_4:65474317-65474336 | None:intergenic | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_4:65474341-65474360 | Msa0695780:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_4:65474413-65474432 | None:intergenic | 35.0% |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_4:65472782-65472801 | Msa0695780:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_4:65472865-65472884 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_4:65472877-65472896 | Msa0695780:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_4:65472935-65472954 | Msa0695780:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_4:65472941-65472960 | Msa0695780:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_4:65472954-65472973 | Msa0695780:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_4:65473005-65473024 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_4:65473431-65473450 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_4:65473432-65473451 | None:intergenic | 35.0% |
| AATTCATGCAGTCAAGACAT+CGG | + | chr4_4:65473495-65473514 | Msa0695780:intron | 35.0% | |
| AACAAATGACTCTAACTGTG+TGG | + | chr4_4:65473625-65473644 | Msa0695780:intron | 35.0% | |
| !! | CTACTGCAAAGTAATGGATT+TGG | - | chr4_4:65473669-65473688 | None:intergenic | 35.0% |
| AAAGAGCTACTGCAAAGTAA+TGG | - | chr4_4:65473675-65473694 | None:intergenic | 35.0% | |
| ATTACTTTGCAGTAGCTCTT+TGG | + | chr4_4:65473674-65473693 | Msa0695780:intron | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_4:65473736-65473755 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_4:65473737-65473756 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_4:65473737-65473756 | Msa0695780:intron | 35.0% | |
| !! | TGTACGACGATATTGACTTT+GGG | - | chr4_4:65473809-65473828 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_4:65474134-65474153 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_4:65474131-65474150 | Msa0695780:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_4:65474139-65474158 | Msa0695780:CDS | 35.0% | |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_4:65474213-65474232 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCAG+AGG | + | chr4_4:65474215-65474234 | Msa0695780:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_4:65474278-65474297 | Msa0695780:CDS | 35.0% | |
| ACAAGAACCTAAAGAAAGAG+AGG | + | chr4_4:65474307-65474326 | Msa0695780:CDS | 35.0% | |
| ACTCTAACCTCTCTTTCTTT+AGG | - | chr4_4:65474317-65474336 | None:intergenic | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_4:65474341-65474360 | Msa0695780:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_4:65474413-65474432 | None:intergenic | 35.0% |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_4:65472866-65472885 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_4:65472884-65472903 | Msa0695780:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_4:65472888-65472907 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_4:65473073-65473092 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_4:65473214-65473233 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_4:65473211-65473230 | Msa0695780:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_4:65473448-65473467 | Msa0695780:intron | 40.0% | |
| !! | GTAATGGATTTGGATCTGCT+GGG | - | chr4_4:65473659-65473678 | None:intergenic | 40.0% |
| !! | AGTAATGGATTTGGATCTGC+TGG | - | chr4_4:65473660-65473679 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_4:65473810-65473829 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_4:65474201-65474220 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_4:65474281-65474300 | Msa0695780:CDS | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_4:65474362-65474381 | Msa0695780:CDS | 40.0% | |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_4:65472866-65472885 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_4:65472884-65472903 | Msa0695780:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_4:65472888-65472907 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATCAAGGT+AGG | - | chr4_4:65473073-65473092 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_4:65473214-65473233 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_4:65473211-65473230 | Msa0695780:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_4:65473448-65473467 | Msa0695780:intron | 40.0% | |
| !! | GTAATGGATTTGGATCTGCT+GGG | - | chr4_4:65473659-65473678 | None:intergenic | 40.0% |
| !! | AGTAATGGATTTGGATCTGC+TGG | - | chr4_4:65473660-65473679 | None:intergenic | 40.0% |
| !! | GTGTACGACGATATTGACTT+TGG | - | chr4_4:65473810-65473829 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_4:65474201-65474220 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_4:65474281-65474300 | Msa0695780:CDS | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_4:65474362-65474381 | Msa0695780:CDS | 40.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_4:65472837-65472856 | Msa0695780:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_4:65472846-65472865 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_4:65472893-65472912 | Msa0695780:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_4:65472905-65472924 | Msa0695780:CDS | 45.0% | |
| GTCTTGACTGCATGAATTCG+TGG | - | chr4_4:65473493-65473512 | None:intergenic | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_4:65474149-65474168 | Msa0695780:CDS | 45.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_4:65472837-65472856 | Msa0695780:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_4:65472846-65472865 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_4:65472893-65472912 | Msa0695780:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_4:65472905-65472924 | Msa0695780:CDS | 45.0% | |
| GTCTTGACTGCATGAATTCG+TGG | - | chr4_4:65473493-65473512 | None:intergenic | 45.0% | |
| AAAGGGTTGCAGGCATATGT+TGG | + | chr4_4:65474149-65474168 | Msa0695780:CDS | 45.0% | |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_4:65472847-65472866 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_4:65472854-65472873 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_4:65472983-65473002 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_4:65473733-65473752 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_4:65474383-65474402 | Msa0695780:CDS | 50.0% |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_4:65472847-65472866 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_4:65472854-65472873 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_4:65472983-65473002 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_4:65473733-65473752 | None:intergenic | 50.0% |
| ! | GGAGTGTCTCTCTCAGCATA+TGG | + | chr4_4:65474383-65474402 | Msa0695780:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 65472773 | 65474440 | 65472773 | ID=Msa0695780;Name=Msa0695780 |
| chr4_4 | mRNA | 65472773 | 65474440 | 65472773 | ID=Msa0695780-mRNA-1;Parent=Msa0695780;Name=Msa0695780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|211 |
| chr4_4 | exon | 65472773 | 65473063 | 65472773 | ID=Msa0695780-mRNA-1:exon:18843;Parent=Msa0695780-mRNA-1 |
| chr4_4 | exon | 65474096 | 65474440 | 65474096 | ID=Msa0695780-mRNA-1:exon:18844;Parent=Msa0695780-mRNA-1 |
| chr4_4 | CDS | 65472773 | 65473063 | 65472773 | ID=Msa0695780-mRNA-1:cds;Parent=Msa0695780-mRNA-1 |
| chr4_4 | CDS | 65474096 | 65474440 | 65474096 | ID=Msa0695780-mRNA-1:cds;Parent=Msa0695780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
