AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653620 MtrunA17_Chr4g0047841 95.977 348 9 3 1 347 1 344 0.0 679
Msa0653620 MtrunA17_Chr2g0318101 53.050 377 121 12 1 346 1 352 2.49e-118 346
Msa0653620 MtrunA17_Chr7g0252971 63.492 189 44 2 10 191 3 173 1.58e-84 259
Msa0653620 MtrunA17_Chr7g0263931 51.639 244 95 4 14 255 10 232 3.11e-79 245
Msa0653620 MtrunA17_Chr2g0326361 63.636 176 46 2 15 190 14 171 4.21e-78 242
Msa0653620 MtrunA17_Chr5g0417791 62.500 176 46 2 14 189 2 157 1.02e-77 239
Msa0653620 MtrunA17_Chr3g0124761 66.292 178 36 3 14 190 6 160 8.64e-77 238
Msa0653620 MtrunA17_Chr4g0042561 62.857 175 45 2 15 189 9 163 1.10e-76 236
Msa0653620 MtrunA17_Chr2g0318081 64.835 182 40 4 15 196 16 173 7.48e-75 234
Msa0653620 MtrunA17_Chr8g0384721 58.824 204 58 6 14 213 6 187 1.28e-73 229
Msa0653620 MtrunA17_Chr8g0359921 64.835 182 42 4 15 196 14 173 2.62e-73 230
Msa0653620 MtrunA17_Chr3g0130731 59.788 189 46 4 14 195 6 171 3.19e-70 221
Msa0653620 MtrunA17_Chr5g0417001 43.220 236 113 4 15 245 14 233 7.21e-63 205
Msa0653620 MtrunA17_Chr6g0453131 52.688 186 70 4 15 198 15 184 7.72e-62 202
Msa0653620 MtrunA17_Chr8g0361731 50.857 175 73 1 17 191 16 177 1.33e-61 202
Msa0653620 MtrunA17_Chr7g0214071 54.237 177 54 3 14 190 14 163 3.41e-58 189
Msa0653620 MtrunA17_Chr2g0316971 50.847 177 67 1 14 190 22 178 9.11e-58 191
Msa0653620 MtrunA17_Chr6g0484441 49.724 181 65 3 15 195 5 159 3.11e-56 186
Msa0653620 MtrunA17_Chr4g0060931 48.295 176 69 2 15 190 17 170 6.62e-55 183
Msa0653620 MtrunA17_Chr2g0309891 50.000 176 63 5 15 188 6 158 8.34e-55 182
Msa0653620 MtrunA17_Chr3g0139331 48.876 178 63 2 15 190 11 162 3.82e-54 181
Msa0653620 MtrunA17_Chr3g0091921 49.432 176 67 2 15 190 16 169 1.17e-53 178
Msa0653620 MtrunA17_Chr5g0398971 43.578 218 87 7 14 224 6 194 5.43e-53 178
Msa0653620 MtrunA17_Chr1g0147421 48.588 177 62 3 15 188 27 177 7.33e-53 178
Msa0653620 MtrunA17_Chr6g0453451 40.773 233 101 5 14 234 19 226 1.24e-52 176
Msa0653620 MtrunA17_Chr4g0076731 47.090 189 72 4 12 197 51 214 1.49e-52 179
Msa0653620 MtrunA17_Chr3g0109821 46.445 211 81 6 15 223 6 186 2.15e-52 183
Msa0653620 MtrunA17_Chr6g0461661 48.571 175 70 2 15 189 18 172 2.27e-52 177
Msa0653620 MtrunA17_Chr4g0018391 42.056 214 92 5 14 221 6 193 9.06e-52 175
Msa0653620 MtrunA17_Chr5g0433781 42.683 246 100 7 15 253 6 217 1.33e-51 181
Msa0653620 MtrunA17_Chr6g0481091 47.429 175 66 3 15 187 6 156 3.91e-51 170
Msa0653620 MtrunA17_Chr1g0183741 45.455 176 70 2 15 190 10 159 5.05e-51 171
Msa0653620 MtrunA17_Chr5g0442771 47.126 174 74 3 17 187 20 178 6.85e-51 171
Msa0653620 MtrunA17_Chr2g0309331 44.134 179 72 3 15 190 10 163 1.36e-50 172
Msa0653620 MtrunA17_Chr7g0253011 42.194 237 90 7 15 225 17 232 1.42e-50 172
Msa0653620 MtrunA17_Chr5g0405211 43.590 195 74 5 1 192 1 162 1.91e-50 171
Msa0653620 MtrunA17_Chr5g0400461 53.425 146 61 2 15 153 6 151 1.61e-49 169
Msa0653620 MtrunA17_Chr4g0056541 43.005 193 77 4 14 203 6 168 1.97e-49 169
Msa0653620 MtrunA17_Chr7g0261411 46.199 171 66 2 15 185 10 154 3.07e-49 167
Msa0653620 MtrunA17_Chr1g0200561 43.077 195 77 5 3 194 12 175 3.26e-49 168
Msa0653620 MtrunA17_Chr2g0311651 47.340 188 81 5 17 197 24 200 5.82e-49 166
Msa0653620 MtrunA17_Chr4g0017921 42.233 206 89 4 15 217 8 186 6.07e-49 167
Msa0653620 MtrunA17_Chr8g0372121 44.693 179 70 4 15 190 6 158 7.47e-49 166
Msa0653620 MtrunA17_Chr2g0311661 43.458 214 100 6 17 227 23 218 8.54e-49 166
Msa0653620 MtrunA17_Chr4g0054791 54.676 139 60 2 15 150 6 144 7.72e-48 164
Msa0653620 MtrunA17_Chr2g0312321 43.158 190 83 3 15 204 11 175 1.81e-47 162
Msa0653620 MtrunA17_Chr7g0217721 45.930 172 84 2 18 189 22 184 2.04e-47 164
Msa0653620 MtrunA17_Chr8g0346001 41.711 187 91 5 6 189 6 177 2.74e-47 165
Msa0653620 MtrunA17_Chr8g0385991 47.458 177 74 4 14 190 13 170 3.07e-47 159
Msa0653620 MtrunA17_Chr3g0144271 56.589 129 55 1 15 142 23 151 1.39e-46 163
Msa0653620 MtrunA17_Chr7g0217711 52.941 136 60 2 18 151 22 155 4.17e-45 152
Msa0653620 MtrunA17_Chr3g0131911 46.629 178 75 3 15 190 14 173 7.82e-45 154
Msa0653620 MtrunA17_Chr4g0038751 42.246 187 79 4 5 190 6 164 2.52e-44 154
Msa0653620 MtrunA17_Chr1g0197351 45.763 177 76 3 15 189 42 200 2.77e-44 158
Msa0653620 MtrunA17_Chr5g0428991 46.369 179 70 4 15 191 25 179 5.93e-43 157
Msa0653620 MtrunA17_Chr1g0201021 53.435 131 57 2 17 145 21 149 8.47e-43 155
Msa0653620 MtrunA17_Chr3g0130101 42.614 176 75 4 15 188 7 158 1.42e-42 151
Msa0653620 MtrunA17_Chr3g0092671 44.944 178 68 5 17 190 7 158 5.09e-41 150
Msa0653620 MtrunA17_Chr3g0128151 44.444 180 74 4 15 192 22 177 8.04e-41 150
Msa0653620 MtrunA17_Chr1g0197361 43.503 177 72 4 17 190 10 161 2.15e-40 149
Msa0653620 MtrunA17_Chr8g0364791 50.000 132 62 2 13 142 4 133 2.17e-39 144
Msa0653620 MtrunA17_Chr3g0128111 41.477 176 77 4 18 191 45 196 8.16e-39 138
Msa0653620 MtrunA17_Chr8g0345671 50.725 138 63 4 11 144 6 142 1.93e-38 141
Msa0653620 MtrunA17_Chr4g0050701 39.884 173 80 2 15 187 11 159 1.28e-37 133
Msa0653620 MtrunA17_Chr8g0384201 48.485 132 64 2 13 142 4 133 3.15e-37 139
Msa0653620 MtrunA17_Chr4g0026141 39.423 208 95 7 15 213 5 190 4.92e-36 131
Msa0653620 MtrunA17_Chr8g0345691 46.923 130 65 3 14 140 11 139 4.73e-34 129
Msa0653620 MtrunA17_Chr8g0345711 41.549 142 79 3 12 150 9 149 7.66e-33 120
Msa0653620 MtrunA17_Chr2g0321631 36.681 229 108 9 16 229 5 211 8.13e-33 122
Msa0653620 MtrunA17_Chr3g0113001 47.656 128 46 4 64 191 14 120 7.25e-32 121
Msa0653620 MtrunA17_Chr8g0345731 45.865 133 63 4 15 140 24 154 2.81e-31 116
Msa0653620 MtrunA17_Chr7g0266701 36.111 180 91 5 15 188 4 165 4.53e-31 118
Msa0653620 MtrunA17_Chr2g0321741 50.000 98 46 2 44 140 21 116 3.00e-30 118
Msa0653620 MtrunA17_Chr8g0345721 39.053 169 65 5 13 144 28 195 7.43e-30 113
Msa0653620 MtrunA17_Chr8g0384351 39.306 173 61 6 15 187 10 138 5.25e-27 105
Msa0653620 MtrunA17_Chr8g0345701 41.259 143 64 5 15 140 7 146 9.50e-26 101
Msa0653620 MtrunA17_Chr8g0345741 41.525 118 65 3 26 140 2 118 3.71e-25 99.4
Msa0653620 MtrunA17_Chr7g0243371 58.667 75 31 0 68 142 17 91 4.15e-25 98.2
Msa0653620 MtrunA17_Chr3g0130321 36.000 175 88 8 15 186 7 160 3.66e-23 95.5
Msa0653620 MtrunA17_Chr3g0113031 40.517 116 41 3 78 189 3 94 1.83e-22 95.1
Msa0653620 MtrunA17_Chr7g0251661 34.615 130 79 4 15 142 10 135 1.22e-19 84.7
Msa0653620 MtrunA17_Chr7g0251651 35.294 136 82 4 15 148 18 149 2.19e-19 85.1
Msa0653620 MtrunA17_Chr7g0251671 34.783 138 82 5 13 147 8 140 1.28e-18 82.0
Msa0653620 MtrunA17_Chr8g0389661 34.437 151 73 8 15 142 47 194 1.21e-11 65.5
Msa0653620 MtrunA17_Chr4g0040541 34.211 152 76 8 13 145 46 192 1.93e-11 63.9
Msa0653620 MtrunA17_Chr1g0194791 61.702 47 15 2 17 61 48 93 2.40e-11 60.1
Msa0653620 MtrunA17_Chr8g0367761 29.114 158 93 6 1 142 54 208 6.85e-11 62.0
Msa0653620 MtrunA17_Chr4g0046431 29.114 158 93 6 1 142 54 208 8.52e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653620 AT1G61110.1 55.402 361 108 13 1 347 1 322 2.83e-112 330
Msa0653620 AT3G15510.1 51.031 388 121 13 1 346 1 361 7.65e-103 307
Msa0653620 AT3G04070.1 64.362 188 63 2 8 191 3 190 6.86e-84 258
Msa0653620 AT1G52880.1 74.432 176 29 2 19 192 21 182 3.96e-82 253
Msa0653620 AT3G04070.2 63.102 187 51 3 8 191 3 174 3.73e-80 248
Msa0653620 AT1G69490.1 63.687 179 45 3 15 193 9 167 1.82e-79 244
Msa0653620 AT1G01720.1 65.169 178 41 3 14 191 6 162 4.06e-75 234
Msa0653620 AT5G08790.1 56.621 219 71 4 14 231 6 201 5.25e-75 233
Msa0653620 AT4G27410.2 64.972 177 38 4 15 191 14 166 7.51e-75 233
Msa0653620 AT1G52890.1 64.972 177 38 4 15 191 14 166 2.98e-74 232
Msa0653620 AT1G77450.1 64.571 175 38 3 14 187 9 160 5.08e-74 229
Msa0653620 AT3G15500.1 58.911 202 48 4 15 216 14 180 5.12e-74 232
Msa0653620 AT5G63790.1 55.300 217 67 4 14 229 49 236 1.72e-73 230
Msa0653620 AT5G63790.2 55.300 217 67 4 14 229 59 246 2.20e-73 230
Msa0653620 AT4G27410.3 59.278 194 38 5 15 191 14 183 1.55e-70 223
Msa0653620 AT5G39820.1 52.717 184 80 3 17 197 22 201 5.16e-64 207
Msa0653620 AT1G26870.1 51.397 179 74 2 15 193 16 181 4.73e-61 201
Msa0653620 AT5G39610.1 48.936 188 73 3 12 198 17 182 2.97e-58 190
Msa0653620 AT5G18270.2 47.030 202 86 2 15 216 21 201 4.29e-58 191
Msa0653620 AT5G13180.1 54.802 177 54 3 14 190 13 163 8.04e-58 188
Msa0653620 AT5G53950.1 50.000 176 68 1 14 189 16 171 2.73e-57 190
Msa0653620 AT5G18270.1 46.040 202 88 2 15 216 21 201 4.23e-57 189
Msa0653620 AT3G18400.1 50.000 178 64 3 14 191 4 156 3.12e-56 186
Msa0653620 AT1G76420.1 48.851 174 66 2 15 188 22 172 4.71e-56 186
Msa0653620 AT2G24430.2 49.718 177 66 2 15 191 16 169 7.50e-56 185
Msa0653620 AT2G24430.1 49.718 177 66 2 15 191 16 169 7.50e-56 185
Msa0653620 AT5G61430.1 50.000 174 65 2 15 188 16 167 2.24e-55 184
Msa0653620 AT3G15170.1 48.276 174 70 1 15 188 20 173 4.91e-55 182
Msa0653620 AT5G07680.2 50.000 174 65 2 15 188 3 154 8.44e-55 182
Msa0653620 AT5G07680.1 50.000 174 65 2 15 188 17 168 9.31e-55 182
Msa0653620 AT3G29035.1 57.746 142 58 1 15 156 24 163 9.86e-55 182
Msa0653620 AT3G04060.1 49.438 178 69 2 15 192 20 176 1.93e-54 182
Msa0653620 AT3G03200.1 48.087 183 70 4 15 195 6 165 1.80e-53 183
Msa0653620 AT2G33480.2 50.273 183 56 5 14 192 14 165 3.39e-53 176
Msa0653620 AT2G02450.1 60.317 126 49 1 17 142 53 177 1.44e-52 178
Msa0653620 AT2G02450.2 60.317 126 49 1 17 142 53 177 1.75e-52 179
Msa0653620 AT2G33480.1 49.727 183 59 5 14 192 14 167 2.10e-52 174
Msa0653620 AT5G17260.1 45.876 194 74 6 15 205 6 171 6.06e-51 176
Msa0653620 AT1G12260.2 46.893 177 65 4 14 187 6 156 7.18e-51 172
Msa0653620 AT1G79580.3 45.506 178 68 3 15 189 17 168 7.83e-51 173
Msa0653620 AT1G79580.5 45.506 178 68 3 15 189 17 168 7.83e-51 173
Msa0653620 AT1G79580.4 45.506 178 68 3 15 189 17 168 7.83e-51 173
Msa0653620 AT1G79580.2 45.506 178 68 3 15 189 17 168 7.83e-51 173
Msa0653620 AT1G79580.1 45.506 178 68 3 15 189 17 168 7.83e-51 173
Msa0653620 AT4G36160.1 45.789 190 69 6 1 187 1 159 8.57e-51 173
Msa0653620 AT4G36160.3 45.789 190 69 6 1 187 1 159 8.57e-51 173
Msa0653620 AT1G12260.1 46.893 177 65 4 14 187 6 156 8.72e-51 174
Msa0653620 AT4G36160.2 45.789 190 69 6 1 187 5 163 9.61e-51 173
Msa0653620 AT1G65910.1 41.410 227 95 6 15 239 6 196 9.99e-51 179
Msa0653620 AT5G62380.2 46.354 192 69 6 14 198 6 170 1.99e-50 172
Msa0653620 AT5G62380.1 46.354 192 69 6 14 198 6 170 1.99e-50 172
Msa0653620 AT5G46590.2 56.738 141 53 3 7 145 3 137 4.13e-50 169
Msa0653620 AT5G46590.1 56.738 141 53 3 7 145 3 137 5.94e-50 169
Msa0653620 AT2G18060.3 45.355 183 67 5 8 187 6 158 9.37e-50 171
Msa0653620 AT2G18060.1 45.355 183 67 5 8 187 6 158 9.37e-50 171
Msa0653620 AT2G43000.1 46.409 181 74 4 17 197 20 177 1.43e-49 167
Msa0653620 AT4G17980.1 48.087 183 68 5 7 187 3 160 2.34e-49 166
Msa0653620 AT4G17980.2 48.571 175 68 4 15 187 6 160 2.42e-49 167
Msa0653620 AT3G17730.1 46.286 175 68 4 15 187 6 156 2.46e-49 166
Msa0653620 AT5G66300.1 44.175 206 79 7 8 206 9 185 2.53e-49 167
Msa0653620 AT1G71930.2 41.063 207 91 4 15 218 9 187 3.12e-49 168
Msa0653620 AT1G71930.1 41.063 207 91 4 15 218 9 187 3.12e-49 168
Msa0653620 AT4G10350.1 46.067 178 69 4 15 189 9 162 1.88e-48 166
Msa0653620 AT1G62700.1 44.022 184 74 4 15 195 7 164 1.89e-48 168
Msa0653620 AT1G62700.2 44.022 184 74 4 15 195 7 164 1.89e-48 168
Msa0653620 AT1G56010.2 42.408 191 88 4 15 204 19 188 2.27e-48 166
Msa0653620 AT3G12977.1 44.509 173 73 3 15 187 18 167 2.87e-48 164
Msa0653620 AT1G33280.1 46.067 178 66 4 15 189 8 158 3.91e-48 164
Msa0653620 AT3G10480.2 46.032 189 76 4 3 189 15 179 3.94e-48 168
Msa0653620 AT3G10480.1 46.032 189 77 4 3 189 15 180 5.33e-48 168
Msa0653620 AT1G54330.1 47.429 175 63 4 15 187 6 153 2.57e-47 162
Msa0653620 AT3G61910.1 39.352 216 105 6 14 215 10 213 3.30e-47 163
Msa0653620 AT3G10490.1 44.444 189 80 4 3 189 15 180 4.90e-47 159
Msa0653620 AT4G28530.1 42.564 195 70 3 15 193 10 178 1.26e-46 162
Msa0653620 AT1G32510.1 40.094 212 97 4 15 218 6 195 1.46e-46 160
Msa0653620 AT1G32770.1 42.135 178 86 3 15 189 16 179 1.55e-46 162
Msa0653620 AT2G46770.1 41.146 192 99 4 1 189 2 182 1.55e-46 162
Msa0653620 AT3G10500.1 45.506 178 71 3 15 190 9 162 3.02e-46 165
Msa0653620 AT3G10490.2 44.444 189 80 4 3 189 15 180 1.82e-45 161
Msa0653620 AT3G12910.1 48.045 179 77 6 17 191 23 189 2.08e-44 155
Msa0653620 AT5G04410.1 45.506 178 71 4 15 190 9 162 2.71e-44 160
Msa0653620 AT1G34180.3 51.389 144 66 2 1 142 2 143 5.60e-44 157
Msa0653620 AT1G33060.2 46.154 182 72 5 15 194 24 181 1.48e-43 159
Msa0653620 AT1G33060.1 46.154 182 72 5 15 194 24 181 1.50e-43 159
Msa0653620 AT1G34180.1 51.389 144 66 2 1 142 2 143 3.18e-43 157
Msa0653620 AT1G34190.1 53.435 131 57 2 17 145 18 146 3.64e-43 157
Msa0653620 AT2G17040.1 39.234 209 96 4 17 224 8 186 3.86e-43 150
Msa0653620 AT3G10480.3 39.189 222 77 4 3 189 15 213 1.01e-42 155
Msa0653620 AT4G35580.3 46.591 176 66 5 15 187 9 159 3.11e-42 154
Msa0653620 AT4G35580.2 46.591 176 66 5 15 187 9 159 3.12e-42 154
Msa0653620 AT1G34180.4 47.436 156 66 2 1 142 2 155 3.29e-42 152
Msa0653620 AT4G35580.1 46.591 176 66 5 15 187 9 159 3.83e-42 153
Msa0653620 AT1G34180.2 47.436 156 66 2 1 142 2 155 1.52e-41 153
Msa0653620 AT2G27300.1 51.181 127 59 2 15 140 14 138 1.75e-41 148
Msa0653620 AT5G24590.2 55.039 129 55 2 15 141 13 140 1.93e-41 150
Msa0653620 AT3G49530.2 51.128 133 62 2 15 145 13 144 1.06e-40 147
Msa0653620 AT3G49530.1 51.128 133 62 2 15 145 13 144 1.67e-40 148
Msa0653620 AT5G09330.5 51.908 131 59 2 14 142 5 133 2.67e-40 148
Msa0653620 AT5G09330.2 51.908 131 59 2 14 142 5 133 2.67e-40 148
Msa0653620 AT5G09330.4 51.908 131 59 2 14 142 5 133 2.67e-40 148
Msa0653620 AT5G09330.3 51.908 131 59 2 14 142 5 133 2.67e-40 148
Msa0653620 AT5G09330.1 51.908 131 59 2 14 142 5 133 2.67e-40 148
Msa0653620 AT5G64060.1 41.143 175 77 4 15 187 6 156 1.31e-39 143
Msa0653620 AT5G64530.1 41.808 177 83 3 15 191 3 159 8.24e-39 136
Msa0653620 AT3G44290.2 46.875 128 65 2 17 143 16 141 2.14e-37 134
Msa0653620 AT5G22290.1 43.165 139 76 2 3 140 9 145 3.93e-37 136
Msa0653620 AT1G32870.2 47.191 178 68 4 15 190 10 163 6.51e-37 139
Msa0653620 AT1G32870.1 47.191 178 68 4 15 190 10 163 7.11e-37 139
Msa0653620 AT3G44290.1 46.875 128 65 2 17 143 16 141 1.02e-36 135
Msa0653620 AT1G32870.3 47.191 178 68 4 15 190 46 199 1.42e-36 139
Msa0653620 AT5G64530.2 49.219 128 53 2 15 142 3 118 1.48e-35 127
Msa0653620 AT5G04395.1 39.610 154 79 2 3 142 16 169 4.99e-34 124
Msa0653620 AT5G61430.2 47.200 125 44 2 64 188 2 104 1.57e-32 122
Msa0653620 AT3G44350.2 35.160 219 103 9 14 222 4 193 6.17e-32 120
Msa0653620 AT1G56010.1 41.135 141 62 3 64 204 2 121 1.36e-30 117
Msa0653620 AT3G04420.2 44.186 129 66 3 16 140 4 130 2.04e-29 115
Msa0653620 AT3G12977.2 44.355 124 46 3 64 187 14 114 4.52e-29 112
Msa0653620 AT3G44350.1 40.876 137 71 4 14 143 4 137 4.74e-29 110
Msa0653620 AT3G04420.1 44.186 129 66 3 16 140 4 130 5.14e-29 115
Msa0653620 AT5G22380.1 36.667 180 87 6 18 191 8 166 9.80e-29 111
Msa0653620 AT4G28530.2 45.312 128 54 1 15 126 10 137 1.93e-28 112
Msa0653620 AT4G01550.1 44.186 129 68 3 18 142 7 135 2.21e-28 115
Msa0653620 AT2G33480.3 45.736 129 40 4 68 192 8 110 1.22e-27 108
Msa0653620 AT1G02230.1 42.308 130 67 4 16 140 4 130 1.98e-27 110
Msa0653620 AT4G10350.2 45.902 122 42 3 68 189 18 115 2.03e-27 109
Msa0653620 AT4G01520.1 42.029 138 75 4 16 148 5 142 7.40e-25 102
Msa0653620 AT4G01540.3 43.846 130 68 4 18 142 7 136 2.84e-24 103
Msa0653620 AT4G01540.4 43.846 130 68 4 18 142 7 136 4.24e-24 102
Msa0653620 AT1G02250.1 41.538 130 68 4 16 140 4 130 4.38e-24 101
Msa0653620 AT4G01540.1 43.846 130 68 4 18 142 7 136 5.96e-24 102
Msa0653620 AT4G01540.2 43.846 130 68 4 18 142 7 136 7.66e-24 102
Msa0653620 AT1G02220.1 40.310 129 68 4 16 140 4 127 1.14e-22 98.2
Msa0653620 AT5G14000.2 36.923 130 76 3 15 142 15 140 2.20e-20 87.0
Msa0653620 AT5G14000.1 36.923 130 76 3 15 142 15 140 4.02e-20 87.8
Msa0653620 AT1G01010.1 38.060 134 69 6 18 140 6 136 2.63e-19 89.0
Msa0653620 AT2G43000.2 41.322 121 48 4 77 197 2 99 3.04e-19 85.1
Msa0653620 AT3G55210.1 32.124 193 89 8 15 193 11 175 1.38e-16 79.3
Msa0653620 AT3G56530.1 35.659 129 78 3 15 140 52 178 1.69e-16 79.7
Msa0653620 AT5G50820.1 33.835 133 78 4 14 144 16 140 2.27e-16 77.0
Msa0653620 AT3G10490.4 39.216 102 39 3 88 189 2 80 3.08e-15 76.3
Msa0653620 AT3G10490.3 39.216 102 39 3 88 189 2 80 3.08e-15 76.3
Msa0653620 AT2G18060.2 38.947 95 32 3 93 187 2 70 2.33e-14 72.8
Msa0653620 AT3G04430.1 36.364 132 70 5 21 140 6 135 1.57e-13 68.9
Msa0653620 AT1G28470.1 31.973 147 79 7 13 142 75 217 7.77e-13 68.9
Msa0653620 AT5G56620.3 31.613 155 76 6 15 142 43 194 2.07e-12 68.2
Msa0653620 AT5G56620.2 31.613 155 76 6 15 142 43 194 2.44e-12 67.8
Msa0653620 AT5G14490.1 30.435 161 86 7 5 145 48 202 3.17e-12 67.4
Msa0653620 AT5G14490.4 30.435 161 86 7 5 145 45 199 3.42e-12 67.0
Msa0653620 AT5G14490.3 30.435 161 86 7 5 145 48 202 3.47e-12 67.4
Msa0653620 AT1G25580.1 34.266 143 75 7 13 142 56 192 4.05e-12 67.4
Msa0653620 AT5G56620.1 31.613 155 76 6 15 142 43 194 4.22e-12 67.0
Msa0653620 AT4G29230.1 34.416 154 74 8 15 144 48 198 4.51e-12 67.4
Msa0653620 AT4G29230.2 34.416 154 74 8 15 144 47 197 4.59e-12 67.4
Msa0653620 AT5G14490.2 30.435 161 86 7 5 145 45 199 6.95e-12 65.5
Msa0653620 AT4G29230.3 34.416 154 74 8 15 144 48 198 8.55e-12 66.2
Msa0653620 AT4G28500.1 33.557 149 79 6 13 144 57 202 8.76e-11 62.8

Find 81 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCCGGACATAAAT+TGG 0.154420 4_3:-61742014 Msa0653620:CDS
TTTCATCAAAATTCAATTCT+TGG 0.173199 4_3:-61742069 Msa0653620:CDS
CATGCCAAGGCCACTCTTAA+TGG 0.200176 4_3:-61742454 Msa0653620:CDS
CCCAATAGGGCTGCTACTTC+TGG 0.200373 4_3:-61743073 Msa0653620:CDS
TTTATAGGTAAAGCAAGTTT+TGG 0.250824 4_3:-61743154 Msa0653620:intron
CAAAAGGAGTTAAAACTAAT+TGG 0.262200 4_3:-61742949 Msa0653620:CDS
GAATTCTTCTTGTTATTGTT+TGG 0.278889 4_3:+61742836 None:intergenic
CTATTGGGTCTTGCTCCATT+TGG 0.292483 4_3:+61743088 None:intergenic
CCCAGAAGTAGCAGCCCTAT+TGG 0.308982 4_3:+61743072 None:intergenic
TAAATGCATCATCACAGTTT+TGG 0.311946 4_3:-61742227 Msa0653620:CDS
TATTGGGTCTTGCTCCATTT+GGG 0.322648 4_3:+61743089 None:intergenic
GCATTTAGTGCACGTTTCAT+AGG 0.337891 4_3:+61742243 None:intergenic
AATTCAATTCTTGGATCTGT+TGG 0.346734 4_3:-61742060 Msa0653620:CDS
TCTTCAAGCAAACGGTTTCA+TGG 0.349803 4_3:-61742177 Msa0653620:CDS
ATCGGAAACCTGGTGGTAGG+TGG 0.399421 4_3:+61743448 None:intergenic
TTCTTCTTGTTATTGTTTGG+AGG 0.403734 4_3:+61742839 None:intergenic
TCTTCAAGAAGCACAAGTTA+TGG 0.409732 4_3:-61742378 Msa0653620:CDS
TGATCCATTAAGAGTGGCCT+TGG 0.412912 4_3:+61742450 None:intergenic
TTCCCATCAGATGTTAATAT+AGG 0.417975 4_3:+61743022 None:intergenic
AATGATCACGGAATGCAAAA+TGG 0.418422 4_3:-61742315 Msa0653620:CDS
CCAGAAGTAGCAGCCCTATT+GGG 0.428179 4_3:+61743073 None:intergenic
CTTCATCGGTGGGGTGGAAT+CGG 0.437306 4_3:+61743430 None:intergenic
TTCGTACTTGGGAGCTCCCA+TGG 0.440454 4_3:+61743318 None:intergenic
TTTCATGGAGATCTTAATAG+TGG 0.440666 4_3:-61742162 Msa0653620:CDS
GGGCTGCTACTTCTGGGTAT+TGG 0.442139 4_3:-61743066 Msa0653620:CDS
AATGATGACAATTTCTTCGA+TGG 0.445563 4_3:-61742348 Msa0653620:CDS
AACTAGTTCCAATTTATGTC+CGG 0.449473 4_3:+61742006 None:intergenic
GCTTCTTGAAGATGAATGTT+TGG 0.449692 4_3:+61742389 None:intergenic
CCAATAGGGCTGCTACTTCT+GGG 0.454581 4_3:-61743072 Msa0653620:CDS
ATCTCTGCTATGATGGCTAC+TGG 0.455487 4_3:+61743360 None:intergenic
AAGCCTATATTAACATCTGA+TGG 0.457224 4_3:-61743025 Msa0653620:CDS
GAGGCAACAATTTCAACTTC+CGG 0.462175 4_3:-61742025 Msa0653620:CDS
TGGAATGAAACAGGGTCACC+AGG 0.466947 4_3:-61742207 Msa0653620:CDS
AAATGGAGCAAGACCCAATA+GGG 0.470103 4_3:-61743086 Msa0653620:CDS
CAAATGGAGCAAGACCCAAT+AGG 0.479465 4_3:-61743087 Msa0653620:CDS
GGAAACCTGGTGGTAGGTGG+GGG 0.480157 4_3:+61743451 None:intergenic
TCTGGGTATTGGAAAGCTAC+TGG 0.487868 4_3:-61743055 Msa0653620:CDS
AGTGGAATAAGTAGCAATGC+TGG 0.489231 4_3:-61742144 Msa0653620:CDS
ATTGGATCATGCATGAGTAT+AGG 0.492325 4_3:-61742931 Msa0653620:CDS
CATTTAGTGCACGTTTCATA+GGG 0.495376 4_3:+61742244 None:intergenic
GGTCATCTTCTTCAAGCAAA+CGG 0.495966 4_3:-61742185 Msa0653620:CDS
TCTGATGGGAATCAGAAAGT+TGG 0.499516 4_3:-61743010 Msa0653620:CDS
GTGGGGTGGAATCGGAAACC+TGG 0.501175 4_3:+61743438 None:intergenic
CGGAAACCTGGTGGTAGGTG+GGG 0.504339 4_3:+61743450 None:intergenic
TCGGAAACCTGGTGGTAGGT+GGG 0.504413 4_3:+61743449 None:intergenic
GCTATGATGGCTACTGGAAG+TGG 0.505754 4_3:+61743366 None:intergenic
GTGGAATAAGTAGCAATGCT+GGG 0.513945 4_3:-61742143 Msa0653620:CDS
ATTCTTGGATCTGTTGGAGA+TGG 0.516290 4_3:-61742054 Msa0653620:CDS
GAGATCAATCTCTGCTATGA+TGG 0.523237 4_3:+61743353 None:intergenic
AAGTTGTGCTTGGTGGAAGC+TGG 0.530868 4_3:+61742091 None:intergenic
ATCTCTACAAATTCGACCCA+TGG 0.531070 4_3:-61743335 Msa0653620:CDS
AGGGATAGAAAATACCCAAA+TGG 0.534980 4_3:-61743103 Msa0653620:CDS
TATGGAGGGAAGCCACCAAA+AGG 0.535327 4_3:-61742965 Msa0653620:CDS
TGTGCATATACATACCCTTA+GGG 0.545490 4_3:+61742814 None:intergenic
GGTTGTGACACAAACTCAAA+GGG 0.556107 4_3:-61742294 Msa0653620:CDS
TGATGAAAAGTTGTGCTTGG+TGG 0.557736 4_3:+61742084 None:intergenic
ACTACGAGTTCTTCATCGGT+GGG 0.558882 4_3:+61743420 None:intergenic
TTGTTTGGAGGATGATCAGA+AGG 0.562065 4_3:+61742851 None:intergenic
GGATGATCAGAAGGCAGAGG+AGG 0.572911 4_3:+61742860 None:intergenic
GGAGGATGATCAGAAGGCAG+AGG 0.572927 4_3:+61742857 None:intergenic
ATAACAAGAAGAATTCCCTA+AGG 0.573041 4_3:-61742829 Msa0653620:CDS
CGAGTTCTTCATCGGTGGGG+TGG 0.573171 4_3:+61743424 None:intergenic
TCGTACTTGGGAGCTCCCAT+GGG 0.577363 4_3:+61743319 None:intergenic
TGGTTGTGACACAAACTCAA+AGG 0.577669 4_3:-61742295 Msa0653620:CDS
GGAATCGGAAACCTGGTGGT+AGG 0.585801 4_3:+61743445 None:intergenic
CATTAAGAGTGGCCTTGGCA+TGG 0.590428 4_3:+61742455 None:intergenic
GTGAACTACGAGTTCTTCAT+CGG 0.590635 4_3:+61743416 None:intergenic
AGCCTATATTAACATCTGAT+GGG 0.592875 4_3:-61743024 Msa0653620:CDS
GGAATCTTTGCAAATGATCA+CGG 0.595620 4_3:-61742327 Msa0653620:CDS
AACTACGAGTTCTTCATCGG+TGG 0.606004 4_3:+61743419 None:intergenic
GCAACAGTAGCACCATGCCA+AGG 0.616723 4_3:-61742467 Msa0653620:CDS
TCTCTACAAATTCGACCCAT+GGG 0.621113 4_3:-61743334 Msa0653620:CDS
TGGAATAAGTAGCAATGCTG+GGG 0.627641 4_3:-61742142 Msa0653620:CDS
TAACAAGAAGAATTCCCTAA+GGG 0.639219 4_3:-61742828 Msa0653620:intron
CTACGAGTTCTTCATCGGTG+GGG 0.640544 4_3:+61743421 None:intergenic
CTGTTGGAGATGGTGTAATG+AGG 0.645707 4_3:-61742044 Msa0653620:CDS
TCATATTGATCCATTAAGAG+TGG 0.647276 4_3:+61742444 None:intergenic
GGAATGAAACAGGGTCACCA+GGG 0.654300 4_3:-61742206 Msa0653620:CDS
GGGTGGAATCGGAAACCTGG+TGG 0.682142 4_3:+61743441 None:intergenic
TTGCTTGAAGAAGATGACCC+TGG 0.699438 4_3:+61742189 None:intergenic
TGTGACACAAACTCAAAGGG+TGG 0.701015 4_3:-61742291 Msa0653620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGTTTTTTTTTTTTTTTAT+AGG - chr4_3:61742325-61742344 Msa0653620:CDS 10.0%
!! AATTAATAAATAATTGAACA+TGG - chr4_3:61742737-61742756 Msa0653620:intron 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG - chr4_3:61742959-61742978 Msa0653620:CDS 10.0%
!!! CTGTTTTTTTTTTTTTTTAT+AGG - chr4_3:61742325-61742344 Msa0653620:CDS 10.0%
!! AATTAATAAATAATTGAACA+TGG - chr4_3:61742737-61742756 Msa0653620:intron 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG - chr4_3:61742959-61742978 Msa0653620:CDS 10.0%
!!! TTTTTTTATTGTATTGGTTT+TGG - chr4_3:61742965-61742984 Msa0653620:CDS 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG - chr4_3:61742965-61742984 Msa0653620:CDS 15.0%
!! AAAATTTCATATGCAAAACA+TGG + chr4_3:61742267-61742286 None:intergenic 20.0%
!! AAAAAAAACAGAGAAAAAAC+AGG + chr4_3:61742316-61742335 None:intergenic 20.0%
!!! GTTTTGTTGCATATTATTAT+AGG + chr4_3:61743084-61743103 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG - chr4_3:61743425-61743444 Msa0653620:CDS 20.0%
!! AAAATTTCATATGCAAAACA+TGG + chr4_3:61742267-61742286 None:intergenic 20.0%
!! AAAAAAAACAGAGAAAAAAC+AGG + chr4_3:61742316-61742335 None:intergenic 20.0%
!!! GTTTTGTTGCATATTATTAT+AGG + chr4_3:61743084-61743103 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG - chr4_3:61743425-61743444 Msa0653620:CDS 20.0%
! AATGGATGAAAAGATGAAAT+GGG + chr4_3:61742214-61742233 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG + chr4_3:61742215-61742234 None:intergenic 25.0%
! AAACATGGAACATAAAATCT+AGG + chr4_3:61742252-61742271 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG + chr4_3:61742304-61742323 None:intergenic 25.0%
!! TTTATAGGTAAAGCAAGTTT+TGG - chr4_3:61742340-61742359 Msa0653620:CDS 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG - chr4_3:61742341-61742360 Msa0653620:CDS 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG - chr4_3:61742511-61742530 Msa0653620:intron 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG + chr4_3:61742547-61742566 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG - chr4_3:61742545-61742564 Msa0653620:intron 25.0%
!! AGTTTTTGAACTTGCATTAT+AGG + chr4_3:61742614-61742633 None:intergenic 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG + chr4_3:61742661-61742680 None:intergenic 25.0%
! ATTTATGAAACAAATGCACA+TGG + chr4_3:61742720-61742739 None:intergenic 25.0%
! ATATGCATAGTTATGAAACA+CGG - chr4_3:61742830-61742849 Msa0653620:CDS 25.0%
!!! CGCTAATAATTTTAGAAAAC+CGG - chr4_3:61742879-61742898 Msa0653620:CDS 25.0%
!!! GCTAATAATTTTAGAAAACC+GGG - chr4_3:61742880-61742899 Msa0653620:CDS 25.0%
!!! CTAATAATTTTAGAAAACCG+GGG - chr4_3:61742881-61742900 Msa0653620:CDS 25.0%
! AATGAATATGCAATGAAACA+CGG + chr4_3:61742912-61742931 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG + chr4_3:61743013-61743032 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG + chr4_3:61742214-61742233 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG + chr4_3:61742215-61742234 None:intergenic 25.0%
! AAACATGGAACATAAAATCT+AGG + chr4_3:61742252-61742271 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG + chr4_3:61742304-61742323 None:intergenic 25.0%
!! TTTATAGGTAAAGCAAGTTT+TGG - chr4_3:61742340-61742359 Msa0653620:CDS 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG - chr4_3:61742341-61742360 Msa0653620:CDS 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG - chr4_3:61742511-61742530 Msa0653620:intron 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG + chr4_3:61742547-61742566 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG - chr4_3:61742545-61742564 Msa0653620:intron 25.0%
!! AGTTTTTGAACTTGCATTAT+AGG + chr4_3:61742614-61742633 None:intergenic 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG + chr4_3:61742661-61742680 None:intergenic 25.0%
! ATTTATGAAACAAATGCACA+TGG + chr4_3:61742720-61742739 None:intergenic 25.0%
! ATATGCATAGTTATGAAACA+CGG - chr4_3:61742830-61742849 Msa0653620:CDS 25.0%
!!! CGCTAATAATTTTAGAAAAC+CGG - chr4_3:61742879-61742898 Msa0653620:CDS 25.0%
!!! GCTAATAATTTTAGAAAACC+GGG - chr4_3:61742880-61742899 Msa0653620:CDS 25.0%
!!! CTAATAATTTTAGAAAACCG+GGG - chr4_3:61742881-61742900 Msa0653620:CDS 25.0%
! AATGAATATGCAATGAAACA+CGG + chr4_3:61742912-61742931 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG + chr4_3:61743013-61743032 None:intergenic 25.0%
TGTGAAAAAGTTTCGTACTT+GGG + chr4_3:61742190-61742209 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG + chr4_3:61742213-61742232 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+AGG + chr4_3:61742245-61742264 None:intergenic 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG - chr4_3:61742342-61742361 Msa0653620:CDS 30.0%
AAGCCTATATTAACATCTGA+TGG - chr4_3:61742469-61742488 Msa0653620:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG - chr4_3:61742470-61742489 Msa0653620:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG + chr4_3:61742475-61742494 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG - chr4_3:61742514-61742533 Msa0653620:intron 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG - chr4_3:61742515-61742534 Msa0653620:intron 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG + chr4_3:61742544-61742563 None:intergenic 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG + chr4_3:61742658-61742677 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG - chr4_3:61742665-61742684 Msa0653620:intron 30.0%
TAACAAGAAGAATTCCCTAA+GGG - chr4_3:61742666-61742685 Msa0653620:intron 30.0%
AAGATCAGACCATTCAAAAA+AGG + chr4_3:61742789-61742808 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG + chr4_3:61743053-61743072 None:intergenic 30.0%
AATGATGACAATTTCTTCGA+TGG - chr4_3:61743146-61743165 Msa0653620:CDS 30.0%
! TAAATGCATCATCACAGTTT+TGG - chr4_3:61743267-61743286 Msa0653620:intron 30.0%
TTTCATGGAGATCTTAATAG+TGG - chr4_3:61743332-61743351 Msa0653620:CDS 30.0%
! TTTTGATGAAAAGTTGTGCT+TGG + chr4_3:61743416-61743435 None:intergenic 30.0%
AATTCAATTCTTGGATCTGT+TGG - chr4_3:61743434-61743453 Msa0653620:CDS 30.0%
TGTGAAAAAGTTTCGTACTT+GGG + chr4_3:61742190-61742209 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG + chr4_3:61742213-61742232 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+AGG + chr4_3:61742245-61742264 None:intergenic 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG - chr4_3:61742342-61742361 Msa0653620:CDS 30.0%
AAGCCTATATTAACATCTGA+TGG - chr4_3:61742469-61742488 Msa0653620:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG - chr4_3:61742470-61742489 Msa0653620:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG + chr4_3:61742475-61742494 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG - chr4_3:61742514-61742533 Msa0653620:intron 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG - chr4_3:61742515-61742534 Msa0653620:intron 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG + chr4_3:61742544-61742563 None:intergenic 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG + chr4_3:61742658-61742677 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG - chr4_3:61742665-61742684 Msa0653620:intron 30.0%
TAACAAGAAGAATTCCCTAA+GGG - chr4_3:61742666-61742685 Msa0653620:intron 30.0%
AAGATCAGACCATTCAAAAA+AGG + chr4_3:61742789-61742808 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG + chr4_3:61743053-61743072 None:intergenic 30.0%
AATGATGACAATTTCTTCGA+TGG - chr4_3:61743146-61743165 Msa0653620:CDS 30.0%
! TAAATGCATCATCACAGTTT+TGG - chr4_3:61743267-61743286 Msa0653620:intron 30.0%
TTTCATGGAGATCTTAATAG+TGG - chr4_3:61743332-61743351 Msa0653620:CDS 30.0%
! TTTTGATGAAAAGTTGTGCT+TGG + chr4_3:61743416-61743435 None:intergenic 30.0%
AATTCAATTCTTGGATCTGT+TGG - chr4_3:61743434-61743453 Msa0653620:CDS 30.0%
GTGTGAAAAAGTTTCGTACT+TGG + chr4_3:61742191-61742210 None:intergenic 35.0%
AGGATGTAGGTTTGAGTAAA+TGG + chr4_3:61742232-61742251 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG + chr4_3:61742390-61742409 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG + chr4_3:61742391-61742410 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG - chr4_3:61742391-61742410 Msa0653620:CDS 35.0%
ATTGGATCATGCATGAGTAT+AGG - chr4_3:61742563-61742582 Msa0653620:intron 35.0%
TGTGCATATACATACCCTTA+GGG + chr4_3:61742683-61742702 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG - chr4_3:61742777-61742796 Msa0653620:intron 35.0%
!! ATAATTTTAGAAAACCGGGG+AGG - chr4_3:61742884-61742903 Msa0653620:CDS 35.0%
!! TAATTTTAGAAAACCGGGGA+GGG - chr4_3:61742885-61742904 Msa0653620:CDS 35.0%
GCTTCTTGAAGATGAATGTT+TGG + chr4_3:61743108-61743127 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG - chr4_3:61743116-61743135 Msa0653620:CDS 35.0%
GGAATCTTTGCAAATGATCA+CGG - chr4_3:61743167-61743186 Msa0653620:intron 35.0%
AATGATCACGGAATGCAAAA+TGG - chr4_3:61743179-61743198 Msa0653620:intron 35.0%
CATTTAGTGCACGTTTCATA+GGG + chr4_3:61743253-61743272 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG - chr4_3:61743278-61743297 Msa0653620:intron 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG - chr4_3:61743279-61743298 Msa0653620:intron 35.0%
TTCAACTTCCGGACATAAAT+TGG - chr4_3:61743480-61743499 Msa0653620:CDS 35.0%
GTGTGAAAAAGTTTCGTACT+TGG + chr4_3:61742191-61742210 None:intergenic 35.0%
AGGATGTAGGTTTGAGTAAA+TGG + chr4_3:61742232-61742251 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG + chr4_3:61742390-61742409 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG + chr4_3:61742391-61742410 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG - chr4_3:61742391-61742410 Msa0653620:CDS 35.0%
ATTGGATCATGCATGAGTAT+AGG - chr4_3:61742563-61742582 Msa0653620:intron 35.0%
TGTGCATATACATACCCTTA+GGG + chr4_3:61742683-61742702 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG - chr4_3:61742777-61742796 Msa0653620:intron 35.0%
!! ATAATTTTAGAAAACCGGGG+AGG - chr4_3:61742884-61742903 Msa0653620:CDS 35.0%
!! TAATTTTAGAAAACCGGGGA+GGG - chr4_3:61742885-61742904 Msa0653620:CDS 35.0%
GCTTCTTGAAGATGAATGTT+TGG + chr4_3:61743108-61743127 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG - chr4_3:61743116-61743135 Msa0653620:CDS 35.0%
GGAATCTTTGCAAATGATCA+CGG - chr4_3:61743167-61743186 Msa0653620:intron 35.0%
AATGATCACGGAATGCAAAA+TGG - chr4_3:61743179-61743198 Msa0653620:intron 35.0%
CATTTAGTGCACGTTTCATA+GGG + chr4_3:61743253-61743272 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG - chr4_3:61743278-61743297 Msa0653620:intron 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG - chr4_3:61743279-61743298 Msa0653620:intron 35.0%
TTCAACTTCCGGACATAAAT+TGG - chr4_3:61743480-61743499 Msa0653620:CDS 35.0%
GTGAACTACGAGTTCTTCAT+CGG + chr4_3:61742081-61742100 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG + chr4_3:61742106-61742125 None:intergenic 40.0%
GAGATCAATCTCTGCTATGA+TGG + chr4_3:61742144-61742163 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG - chr4_3:61742159-61742178 Msa0653620:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG - chr4_3:61742160-61742179 Msa0653620:CDS 40.0%
TATTGGGTCTTGCTCCATTT+GGG + chr4_3:61742408-61742427 None:intergenic 40.0%
AAATGGAGCAAGACCCAATA+GGG - chr4_3:61742408-61742427 Msa0653620:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG - chr4_3:61742484-61742503 Msa0653620:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG + chr4_3:61742646-61742665 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG + chr4_3:61742684-61742703 None:intergenic 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG - chr4_3:61742979-61742998 Msa0653620:CDS 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG - chr4_3:61742980-61742999 Msa0653620:CDS 40.0%
TGGTTGTGACACAAACTCAA+AGG - chr4_3:61743199-61743218 Msa0653620:intron 40.0%
GGTTGTGACACAAACTCAAA+GGG - chr4_3:61743200-61743219 Msa0653620:intron 40.0%
GCATTTAGTGCACGTTTCAT+AGG + chr4_3:61743254-61743273 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG - chr4_3:61743309-61743328 Msa0653620:intron 40.0%
TCTTCAAGCAAACGGTTTCA+TGG - chr4_3:61743317-61743336 Msa0653620:intron 40.0%
AGTGGAATAAGTAGCAATGC+TGG - chr4_3:61743350-61743369 Msa0653620:CDS 40.0%
GTGGAATAAGTAGCAATGCT+GGG - chr4_3:61743351-61743370 Msa0653620:CDS 40.0%
TGGAATAAGTAGCAATGCTG+GGG - chr4_3:61743352-61743371 Msa0653620:CDS 40.0%
TGATGAAAAGTTGTGCTTGG+TGG + chr4_3:61743413-61743432 None:intergenic 40.0%
ATTCTTGGATCTGTTGGAGA+TGG - chr4_3:61743440-61743459 Msa0653620:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG - chr4_3:61743469-61743488 Msa0653620:CDS 40.0%
GTGAACTACGAGTTCTTCAT+CGG + chr4_3:61742081-61742100 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG + chr4_3:61742106-61742125 None:intergenic 40.0%
GAGATCAATCTCTGCTATGA+TGG + chr4_3:61742144-61742163 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG - chr4_3:61742159-61742178 Msa0653620:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG - chr4_3:61742160-61742179 Msa0653620:CDS 40.0%
TATTGGGTCTTGCTCCATTT+GGG + chr4_3:61742408-61742427 None:intergenic 40.0%
AAATGGAGCAAGACCCAATA+GGG - chr4_3:61742408-61742427 Msa0653620:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG - chr4_3:61742484-61742503 Msa0653620:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG + chr4_3:61742646-61742665 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG + chr4_3:61742684-61742703 None:intergenic 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG - chr4_3:61742979-61742998 Msa0653620:CDS 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG - chr4_3:61742980-61742999 Msa0653620:CDS 40.0%
TGGTTGTGACACAAACTCAA+AGG - chr4_3:61743199-61743218 Msa0653620:intron 40.0%
GGTTGTGACACAAACTCAAA+GGG - chr4_3:61743200-61743219 Msa0653620:intron 40.0%
GCATTTAGTGCACGTTTCAT+AGG + chr4_3:61743254-61743273 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG - chr4_3:61743309-61743328 Msa0653620:intron 40.0%
TCTTCAAGCAAACGGTTTCA+TGG - chr4_3:61743317-61743336 Msa0653620:intron 40.0%
AGTGGAATAAGTAGCAATGC+TGG - chr4_3:61743350-61743369 Msa0653620:CDS 40.0%
GTGGAATAAGTAGCAATGCT+GGG - chr4_3:61743351-61743370 Msa0653620:CDS 40.0%
TGGAATAAGTAGCAATGCTG+GGG - chr4_3:61743352-61743371 Msa0653620:CDS 40.0%
TGATGAAAAGTTGTGCTTGG+TGG + chr4_3:61743413-61743432 None:intergenic 40.0%
ATTCTTGGATCTGTTGGAGA+TGG - chr4_3:61743440-61743459 Msa0653620:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG - chr4_3:61743469-61743488 Msa0653620:CDS 40.0%
ACTACGAGTTCTTCATCGGT+GGG + chr4_3:61742077-61742096 None:intergenic 45.0%
AACTACGAGTTCTTCATCGG+TGG + chr4_3:61742078-61742097 None:intergenic 45.0%
ATCTCTGCTATGATGGCTAC+TGG + chr4_3:61742137-61742156 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG - chr4_3:61742353-61742372 Msa0653620:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG - chr4_3:61742371-61742390 Msa0653620:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG - chr4_3:61742372-61742391 Msa0653620:CDS 45.0%
CTATTGGGTCTTGCTCCATT+TGG + chr4_3:61742409-61742428 None:intergenic 45.0%
CAAATGGAGCAAGACCCAAT+AGG - chr4_3:61742407-61742426 Msa0653620:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG - chr4_3:61742439-61742458 Msa0653620:CDS 45.0%
TGATCCATTAAGAGTGGCCT+TGG + chr4_3:61743047-61743066 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG - chr4_3:61743203-61743222 Msa0653620:intron 45.0%
TTGCTTGAAGAAGATGACCC+TGG + chr4_3:61743308-61743327 None:intergenic 45.0%
CTGTTGGAGATGGTGTAATG+AGG - chr4_3:61743450-61743469 Msa0653620:CDS 45.0%
ACTACGAGTTCTTCATCGGT+GGG + chr4_3:61742077-61742096 None:intergenic 45.0%
AACTACGAGTTCTTCATCGG+TGG + chr4_3:61742078-61742097 None:intergenic 45.0%
ATCTCTGCTATGATGGCTAC+TGG + chr4_3:61742137-61742156 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG - chr4_3:61742353-61742372 Msa0653620:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG - chr4_3:61742371-61742390 Msa0653620:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG - chr4_3:61742372-61742391 Msa0653620:CDS 45.0%
CTATTGGGTCTTGCTCCATT+TGG + chr4_3:61742409-61742428 None:intergenic 45.0%
CAAATGGAGCAAGACCCAAT+AGG - chr4_3:61742407-61742426 Msa0653620:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG - chr4_3:61742439-61742458 Msa0653620:CDS 45.0%
TGATCCATTAAGAGTGGCCT+TGG + chr4_3:61743047-61743066 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG - chr4_3:61743203-61743222 Msa0653620:intron 45.0%
TTGCTTGAAGAAGATGACCC+TGG + chr4_3:61743308-61743327 None:intergenic 45.0%
CTGTTGGAGATGGTGTAATG+AGG - chr4_3:61743450-61743469 Msa0653620:CDS 45.0%
CTACGAGTTCTTCATCGGTG+GGG + chr4_3:61742076-61742095 None:intergenic 50.0%
GCTATGATGGCTACTGGAAG+TGG + chr4_3:61742131-61742150 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+GGG + chr4_3:61742424-61742443 None:intergenic 50.0%
! CCAATAGGGCTGCTACTTCT+GGG - chr4_3:61742422-61742441 Msa0653620:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG - chr4_3:61742529-61742548 Msa0653620:intron 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG + chr4_3:61743042-61743061 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG - chr4_3:61743040-61743059 Msa0653620:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG - chr4_3:61743287-61743306 Msa0653620:intron 50.0%
GGAATGAAACAGGGTCACCA+GGG - chr4_3:61743288-61743307 Msa0653620:intron 50.0%
! AAGTTGTGCTTGGTGGAAGC+TGG + chr4_3:61743406-61743425 None:intergenic 50.0%
CTACGAGTTCTTCATCGGTG+GGG + chr4_3:61742076-61742095 None:intergenic 50.0%
GCTATGATGGCTACTGGAAG+TGG + chr4_3:61742131-61742150 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+GGG + chr4_3:61742424-61742443 None:intergenic 50.0%
! CCAATAGGGCTGCTACTTCT+GGG - chr4_3:61742422-61742441 Msa0653620:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG - chr4_3:61742529-61742548 Msa0653620:intron 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG + chr4_3:61743042-61743061 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG - chr4_3:61743040-61743059 Msa0653620:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG - chr4_3:61743287-61743306 Msa0653620:intron 50.0%
GGAATGAAACAGGGTCACCA+GGG - chr4_3:61743288-61743307 Msa0653620:intron 50.0%
! AAGTTGTGCTTGGTGGAAGC+TGG + chr4_3:61743406-61743425 None:intergenic 50.0%
TCGGAAACCTGGTGGTAGGT+GGG + chr4_3:61742048-61742067 None:intergenic 55.0%
ATCGGAAACCTGGTGGTAGG+TGG + chr4_3:61742049-61742068 None:intergenic 55.0%
GGAATCGGAAACCTGGTGGT+AGG + chr4_3:61742052-61742071 None:intergenic 55.0%
CTTCATCGGTGGGGTGGAAT+CGG + chr4_3:61742067-61742086 None:intergenic 55.0%
TCGTACTTGGGAGCTCCCAT+GGG + chr4_3:61742178-61742197 None:intergenic 55.0%
TTCGTACTTGGGAGCTCCCA+TGG + chr4_3:61742179-61742198 None:intergenic 55.0%
! CCCAATAGGGCTGCTACTTC+TGG - chr4_3:61742421-61742440 Msa0653620:CDS 55.0%
CCCAGAAGTAGCAGCCCTAT+TGG + chr4_3:61742425-61742444 None:intergenic 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG - chr4_3:61742428-61742447 Msa0653620:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG + chr4_3:61742637-61742656 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG + chr4_3:61742640-61742659 None:intergenic 55.0%
AATGAAACACGGACCCTCCC+CGG + chr4_3:61742901-61742920 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG - chr4_3:61743027-61743046 Msa0653620:CDS 55.0%
TCGGAAACCTGGTGGTAGGT+GGG + chr4_3:61742048-61742067 None:intergenic 55.0%
ATCGGAAACCTGGTGGTAGG+TGG + chr4_3:61742049-61742068 None:intergenic 55.0%
GGAATCGGAAACCTGGTGGT+AGG + chr4_3:61742052-61742071 None:intergenic 55.0%
CTTCATCGGTGGGGTGGAAT+CGG + chr4_3:61742067-61742086 None:intergenic 55.0%
TCGTACTTGGGAGCTCCCAT+GGG + chr4_3:61742178-61742197 None:intergenic 55.0%
TTCGTACTTGGGAGCTCCCA+TGG + chr4_3:61742179-61742198 None:intergenic 55.0%
! CCCAATAGGGCTGCTACTTC+TGG - chr4_3:61742421-61742440 Msa0653620:CDS 55.0%
CCCAGAAGTAGCAGCCCTAT+TGG + chr4_3:61742425-61742444 None:intergenic 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG - chr4_3:61742428-61742447 Msa0653620:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG + chr4_3:61742637-61742656 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG + chr4_3:61742640-61742659 None:intergenic 55.0%
AATGAAACACGGACCCTCCC+CGG + chr4_3:61742901-61742920 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG - chr4_3:61743027-61743046 Msa0653620:CDS 55.0%
GGAAACCTGGTGGTAGGTGG+GGG + chr4_3:61742046-61742065 None:intergenic 60.0%
CGGAAACCTGGTGGTAGGTG+GGG + chr4_3:61742047-61742066 None:intergenic 60.0%
GGGTGGAATCGGAAACCTGG+TGG + chr4_3:61742056-61742075 None:intergenic 60.0%
GTGGGGTGGAATCGGAAACC+TGG + chr4_3:61742059-61742078 None:intergenic 60.0%
CGAGTTCTTCATCGGTGGGG+TGG + chr4_3:61742073-61742092 None:intergenic 60.0%
GGAAACCTGGTGGTAGGTGG+GGG + chr4_3:61742046-61742065 None:intergenic 60.0%
CGGAAACCTGGTGGTAGGTG+GGG + chr4_3:61742047-61742066 None:intergenic 60.0%
GGGTGGAATCGGAAACCTGG+TGG + chr4_3:61742056-61742075 None:intergenic 60.0%
GTGGGGTGGAATCGGAAACC+TGG + chr4_3:61742059-61742078 None:intergenic 60.0%
CGAGTTCTTCATCGGTGGGG+TGG + chr4_3:61742073-61742092 None:intergenic 60.0%
CCTGGTGGTAGGTGGGGGTG+TGG + chr4_3:61742041-61742060 None:intergenic 70.0%
CCACACCCCCACCTACCACC+AGG - chr4_3:61742038-61742057 Msa0653620:CDS 70.0%
CCTGGTGGTAGGTGGGGGTG+TGG + chr4_3:61742041-61742060 None:intergenic 70.0%
CCACACCCCCACCTACCACC+AGG - chr4_3:61742038-61742057 Msa0653620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 61742008 61743508 61742008 ID=Msa0653620;Name=Msa0653620
chr4_3 mRNA 61742008 61743508 61742008 ID=Msa0653620-mRNA-1;Parent=Msa0653620;Name=Msa0653620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|1|1|1|3|0|347
chr4_3 exon 61743325 61743508 61743325 ID=Msa0653620-mRNA-1:exon:16980;Parent=Msa0653620-mRNA-1
chr4_3 exon 61742829 61743169 61742829 ID=Msa0653620-mRNA-1:exon:16979;Parent=Msa0653620-mRNA-1
chr4_3 exon 61742008 61742526 61742008 ID=Msa0653620-mRNA-1:exon:16978;Parent=Msa0653620-mRNA-1
chr4_3 CDS 61743325 61743508 61743325 ID=Msa0653620-mRNA-1:cds;Parent=Msa0653620-mRNA-1
chr4_3 CDS 61742829 61743169 61742829 ID=Msa0653620-mRNA-1:cds;Parent=Msa0653620-mRNA-1
chr4_3 CDS 61742008 61742526 61742008 ID=Msa0653620-mRNA-1:cds;Parent=Msa0653620-mRNA-1
Gene Sequence

>Msa0653620

ATGGACAGCACAGATTCATCATCTTGCTCTCCACACCCCCACCTACCACCAGGTTTCCGATTCCACCCCACCGATGAAGAACTCGTAGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCACTTCCAGTAGCCATCATAGCAGAGATTGATCTCTACAAATTCGACCCATGGGAGCTCCCAAGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGAGCAAGACCCAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATCATGCATGAGTATAGGCTCATCACTGATTATAATCATAATTCCTATAATGCAAGTTCAAAAACTCCTCCTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCCCTAAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACTCTTAATGGATCAATATGATGATCAAACCTATAATAATATGCAACAAAACTCCAAACATTCATCTTCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTCGATGGAATCTTTGCAAATGATCACGGAATGCAAAATGGTTGTGACACAAACTCAAAGGGTGGTAACAATAATAATGAATCATTATTCCCTATGAAACGTGCACTAAATGCATCATCACAGTTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCAAGCAAACGGTTTCATGGAGATCTTAATAGTGGAATAAGTAGCAATGCTGGGGAAAATAATTCATTTGTTTCACTGCTTAGCCAGCTTCCACCAAGCACAACTTTTCATCAAAATTCAATTCTTGGATCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTGGAACTAG
Protein sequence

>Msa0653620

MDSTDSSSCSPHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDYNHNSYNASSKTPPLPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPLLMDQYDDQTYNNMQQNSKHSSSRSTSYGLENDDNFFDGIFANDHGMQNGCDTNSKGGNNNNESLFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNSGISSNAGENNSFVSLLSQLPPSTTFHQNSILGSVGDGVMRQQFQLPDINWN*