AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653740 MtrunA17_Chr4g0014851 89.431 123 13 0 1 123 1 123 3.92e-78 228
Msa0653740 MtrunA17_Chr4g0014871 81.061 132 19 1 1 126 1 132 1.09e-66 211
Msa0653740 MtrunA17_Chr4g0014801 88.288 111 12 1 1 111 1 110 2.24e-61 197
Msa0653740 MtrunA17_Chr4g0014841 86.486 111 14 1 1 111 1 110 1.89e-60 195
Msa0653740 MtrunA17_Chr4g0014791 81.081 111 20 1 1 111 1 110 7.08e-57 186
Msa0653740 MtrunA17_Chr4g0014781 80.180 111 21 1 1 111 1 110 4.76e-55 181
Msa0653740 MtrunA17_Chr3g0077151 73.267 101 27 0 15 115 13 113 3.47e-45 154
Msa0653740 MtrunA17_Chr3g0112661 47.525 101 53 0 18 118 19 119 5.21e-32 110
Msa0653740 MtrunA17_Chr3g0114501 42.742 124 71 0 9 132 1 124 6.06e-32 119
Msa0653740 MtrunA17_Chr1g0166721 50.000 100 50 0 18 117 13 112 8.14e-32 110
Msa0653740 MtrunA17_Chr8g0375351 50.000 104 52 0 18 121 28 131 6.77e-31 115
Msa0653740 MtrunA17_Chr8g0375321 42.400 125 68 1 1 121 4 128 7.70e-31 115
Msa0653740 MtrunA17_Chr8g0375341 50.000 104 52 0 18 121 28 131 9.48e-31 115
Msa0653740 MtrunA17_Chr7g0241741 46.087 115 62 0 18 132 10 124 1.06e-30 115
Msa0653740 MtrunA17_Chr7g0261731 47.222 108 57 0 14 121 15 122 2.21e-30 112
Msa0653740 MtrunA17_Chr7g0261811 51.515 99 48 0 18 116 15 113 3.37e-30 114
Msa0653740 MtrunA17_Chr7g0261771 50.505 99 49 0 18 116 19 117 5.13e-30 113
Msa0653740 MtrunA17_Chr8g0375331 42.975 121 63 1 1 121 1 115 2.83e-29 111
Msa0653740 MtrunA17_Chr7g0261751 49.495 99 50 0 18 116 19 117 6.64e-29 110
Msa0653740 MtrunA17_Chr1g0166791 47.222 108 57 0 9 116 3 110 6.81e-29 110
Msa0653740 MtrunA17_Chr8g0375291 48.485 99 51 0 18 116 28 126 9.23e-29 110
Msa0653740 MtrunA17_Chr3g0112671 46.465 99 53 0 18 116 21 119 9.60e-29 109
Msa0653740 MtrunA17_Chr7g0261791 45.192 104 57 0 18 121 17 120 1.01e-28 109
Msa0653740 MtrunA17_Chr3g0112611 46.939 98 52 0 18 115 20 117 1.14e-28 109
Msa0653740 MtrunA17_Chr3g0104011 44.348 115 64 0 18 132 10 124 1.87e-28 108
Msa0653740 MtrunA17_Chr7g0261851 43.220 118 65 1 6 121 2 119 2.86e-28 108
Msa0653740 MtrunA17_Chr7g0261671 42.991 107 61 0 11 117 13 119 7.52e-28 99.8
Msa0653740 MtrunA17_Chr7g0240381 41.379 116 67 1 1 116 1 115 1.64e-27 106
Msa0653740 MtrunA17_Chr4g0008651 42.342 111 60 1 10 116 10 120 2.44e-27 105
Msa0653740 MtrunA17_Chr8g0353031 53.333 105 41 1 31 127 19 123 1.13e-26 103
Msa0653740 MtrunA17_Chr1g0166711 48.077 104 54 0 18 121 13 116 1.28e-26 103
Msa0653740 MtrunA17_Chr7g0261881 45.192 104 57 0 18 121 15 118 1.51e-26 103
Msa0653740 MtrunA17_Chr4g0005901 42.609 115 66 0 18 132 20 134 1.60e-26 103
Msa0653740 MtrunA17_Chr8g0375311 40.496 121 66 1 2 116 6 126 2.14e-26 103
Msa0653740 MtrunA17_Chr1g0187241 43.333 120 57 1 2 121 9 117 1.22e-25 101
Msa0653740 MtrunA17_Chr8g0375361 40.945 127 69 2 1 121 4 130 4.08e-24 96.7
Msa0653740 MtrunA17_Chr1g0166741 43.878 98 55 0 18 115 15 112 1.59e-23 95.1
Msa0653740 MtrunA17_Chr3g0082621 53.425 73 34 0 45 117 1 73 7.17e-23 86.3
Msa0653740 MtrunA17_Chr5g0400371 38.393 112 68 1 6 116 87 198 1.70e-21 89.4
Msa0653740 MtrunA17_Chr4g0056431 39.655 116 70 0 17 132 12 127 1.31e-20 86.7
Msa0653740 MtrunA17_Chr5g0399071 41.379 116 68 0 17 132 12 127 2.52e-20 85.9
Msa0653740 MtrunA17_Chr4g0063591 44.355 124 69 0 9 132 1 124 9.72e-20 84.3
Msa0653740 MtrunA17_Chr4g0011041 37.374 99 62 0 18 116 24 122 1.41e-18 80.9
Msa0653740 MtrunA17_Chr4g0054891 35.606 132 81 3 1 128 80 211 1.70e-18 80.9
Msa0653740 MtrunA17_Chr3g0142101 43.299 97 55 0 18 114 23 119 4.13e-18 79.7
Msa0653740 MtrunA17_Chr3g0142091 40.566 106 62 1 10 114 5 110 5.78e-18 79.3
Msa0653740 MtrunA17_Chr7g0240221 28.070 114 82 0 6 119 3 116 6.17e-18 74.3
Msa0653740 MtrunA17_Chr7g0240191 28.070 114 82 0 6 119 3 116 6.17e-18 74.3
Msa0653740 MtrunA17_Chr7g0240161 28.070 114 82 0 6 119 3 116 6.17e-18 74.3
Msa0653740 MtrunA17_Chr7g0217461 36.000 100 64 0 17 116 11 110 8.38e-18 79.0
Msa0653740 MtrunA17_Chr3g0142111 43.299 97 55 0 18 114 34 130 9.98e-18 77.8
Msa0653740 MtrunA17_Chr5g0399061 42.268 97 56 0 11 107 8 104 1.03e-17 78.6
Msa0653740 MtrunA17_Chr7g0240141 27.193 114 83 0 6 119 3 116 1.97e-17 73.2
Msa0653740 MtrunA17_Chr1g0166771 52.239 67 32 0 49 115 10 76 7.07e-17 76.3
Msa0653740 MtrunA17_Chr7g0255611 42.708 96 53 1 21 116 22 115 1.38e-16 75.5
Msa0653740 MtrunA17_Chr7g0255621 41.000 100 59 0 17 116 7 106 1.64e-16 75.1
Msa0653740 MtrunA17_Chr5g0422881 45.882 85 46 0 30 114 20 104 3.06e-16 74.3
Msa0653740 MtrunA17_Chr7g0235511 26.724 116 83 1 6 119 3 118 1.97e-15 67.8
Msa0653740 MtrunA17_Chr7g0218851 35.714 98 62 1 12 109 29 125 2.43e-15 71.6
Msa0653740 MtrunA17_Chr5g0415791 39.080 87 53 0 30 116 29 115 3.41e-15 71.2
Msa0653740 MtrunA17_Chr7g0255601 37.931 116 65 2 15 123 12 127 4.14e-15 71.2
Msa0653740 MtrunA17_Chr7g0214461 35.714 112 66 2 5 116 59 164 4.16e-15 71.2
Msa0653740 MtrunA17_Chr7g0240271 27.103 107 78 0 10 116 4 110 7.72e-15 70.5
Msa0653740 MtrunA17_Chr8g0362781 30.000 120 82 1 13 132 15 132 1.15e-14 69.7
Msa0653740 MtrunA17_Chr7g0214731 40.000 85 51 0 31 115 62 146 1.88e-14 69.3
Msa0653740 MtrunA17_Chr5g0439381 40.000 115 69 0 18 132 16 130 6.65e-14 67.8
Msa0653740 MtrunA17_Chr1g0157611 38.298 94 56 1 17 108 1 94 7.35e-14 67.4
Msa0653740 MtrunA17_Chr4g0060051 35.417 96 62 0 18 113 10 105 2.94e-13 62.4
Msa0653740 MtrunA17_Chr1g0157601 38.298 94 56 1 25 116 8 101 3.65e-13 65.5
Msa0653740 MtrunA17_Chr8g0362791 36.585 82 52 0 36 117 42 123 6.31e-13 62.0
Msa0653740 MtrunA17_Chr2g0276751 32.203 118 76 1 10 123 18 135 8.76e-13 64.3
Msa0653740 MtrunA17_Chr4g0059991 43.056 72 41 0 36 107 28 99 1.37e-12 63.9
Msa0653740 MtrunA17_Chr2g0325951 40.351 114 62 2 17 125 1 113 2.45e-12 63.2
Msa0653740 MtrunA17_Chr3g0133341 34.579 107 70 0 26 132 10 116 2.59e-12 63.2
Msa0653740 MtrunA17_Chr6g0451841 38.750 80 49 0 37 116 12 91 4.11e-12 62.4
Msa0653740 MtrunA17_Chr1g0213711 35.955 89 57 0 28 116 19 107 6.32e-12 62.0
Msa0653740 MtrunA17_Chr8g0379971 28.099 121 87 0 12 132 2 122 1.01e-11 61.2
Msa0653740 MtrunA17_Chr5g0415851 39.706 68 41 0 44 111 6 73 1.99e-11 57.0
Msa0653740 MtrunA17_Chr7g0240281 29.412 85 60 0 28 112 22 106 2.17e-11 60.5
Msa0653740 MtrunA17_Chr4g0059971 32.990 97 65 0 36 132 40 136 2.96e-11 60.1
Msa0653740 MtrunA17_Chr4g0060001 34.043 94 57 1 32 125 31 119 4.72e-11 59.3
Msa0653740 MtrunA17_Chr2g0325961 37.255 102 59 1 17 113 1 102 5.63e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653740 AT1G22570.1 68.317 101 32 0 11 111 9 109 8.11e-41 143
Msa0653740 AT1G22550.1 67.327 101 33 0 11 111 9 109 1.42e-40 142
Msa0653740 AT1G22540.1 72.917 96 26 0 21 116 19 114 6.68e-37 132
Msa0653740 AT1G72120.1 57.576 132 50 2 1 132 1 126 8.48e-35 127
Msa0653740 AT1G72125.1 61.345 119 43 1 14 132 11 126 1.05e-33 124
Msa0653740 AT3G53960.1 47.500 120 57 2 3 116 2 121 4.07e-31 117
Msa0653740 AT1G72140.1 51.818 110 53 0 14 123 16 125 5.81e-30 113
Msa0653740 AT2G37900.1 42.754 138 73 2 1 132 1 138 7.88e-30 113
Msa0653740 AT3G54140.1 49.515 103 50 1 18 120 10 110 8.39e-29 110
Msa0653740 AT3G54140.2 49.515 103 50 1 18 120 10 110 8.39e-29 110
Msa0653740 AT1G22570.2 72.857 70 19 0 42 111 3 72 1.04e-28 110
Msa0653740 AT2G02040.1 48.077 104 54 0 18 121 27 130 6.45e-28 107
Msa0653740 AT3G54450.1 56.322 87 37 1 30 116 11 96 3.34e-27 105
Msa0653740 AT5G01180.2 41.739 115 67 0 18 132 11 125 1.77e-26 103
Msa0653740 AT5G01180.3 41.739 115 67 0 18 132 11 125 1.77e-26 103
Msa0653740 AT5G01180.1 41.739 115 67 0 18 132 11 125 1.77e-26 103
Msa0653740 AT2G40460.1 46.465 99 53 0 18 116 10 108 2.11e-26 103
Msa0653740 AT1G72130.1 59.375 96 39 0 30 125 23 118 1.33e-25 101
Msa0653740 AT1G12110.1 44.800 125 69 0 8 132 3 127 9.23e-25 99.0
Msa0653740 AT5G46040.1 39.837 123 74 0 10 132 5 127 1.33e-24 98.6
Msa0653740 AT1G62200.3 44.231 104 58 0 18 121 52 155 2.14e-24 98.2
Msa0653740 AT1G62200.2 44.231 104 58 0 18 121 38 141 2.23e-24 97.8
Msa0653740 AT1G62200.1 44.231 104 58 0 18 121 38 141 2.47e-24 97.8
Msa0653740 AT2G02020.2 38.938 113 68 1 3 114 12 124 2.37e-23 95.1
Msa0653740 AT2G02020.1 38.938 113 68 1 3 114 12 124 2.72e-23 94.7
Msa0653740 AT5G46050.1 42.857 105 60 0 10 114 5 109 4.28e-23 94.4
Msa0653740 AT1G32450.1 36.441 118 73 1 1 116 4 121 6.84e-20 85.1
Msa0653740 AT4G21680.1 41.304 92 54 0 18 109 14 105 8.33e-18 79.3
Msa0653740 AT2G26690.1 41.935 124 72 0 9 132 1 124 1.78e-16 75.5
Msa0653740 AT1G69870.1 39.773 88 53 0 29 116 48 135 5.48e-16 73.9
Msa0653740 AT1G68570.1 46.914 81 43 0 41 121 32 112 3.22e-15 71.6
Msa0653740 AT1G68570.2 47.368 76 40 0 46 121 7 82 1.67e-14 69.7
Msa0653740 AT3G01350.1 37.647 85 53 0 30 114 5 89 2.46e-13 66.2
Msa0653740 AT5G13400.1 37.209 86 54 0 31 116 63 148 2.65e-13 66.2
Msa0653740 AT1G69860.1 30.928 97 67 0 36 132 22 118 2.84e-13 66.2
Msa0653740 AT5G19640.1 33.684 95 63 0 33 127 60 154 3.17e-13 66.2
Msa0653740 AT5G62730.1 34.234 111 73 0 6 116 30 140 5.07e-13 65.5
Msa0653740 AT5G14940.1 37.647 85 53 0 30 114 5 89 6.65e-12 62.4
Msa0653740 AT1G27080.1 35.714 98 62 1 19 116 2 98 1.01e-11 61.6
Msa0653740 AT1G18880.1 37.778 90 55 1 36 125 23 111 1.51e-11 61.2
Msa0653740 AT2G37900.2 48.276 58 30 0 75 132 2 59 1.79e-11 60.8
Msa0653740 AT3G21670.1 38.136 118 73 0 15 132 12 129 5.83e-11 59.7

Find 35 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGATCTGTCCTTCTTATT+TGG 0.127040 4_3:+61920045 None:intergenic
GCAGAGAGGATGTCATATTT+TGG 0.206086 4_3:-61919236 Msa0653740:CDS
TCAGATCCAAATCTGGTTAT+TGG 0.263593 4_3:-61919845 Msa0653740:CDS
GTCACAACTCAACTTGCTTC+TGG 0.286622 4_3:+61920026 None:intergenic
CGTTCTGCTTGGTTTATCAT+AGG 0.320100 4_3:-61919822 Msa0653740:intron
TGCTTCTCTCATCTATATCT+TGG 0.338300 4_3:-61919051 Msa0653740:CDS
AGCAAATGCACCGTATATAG+AGG 0.339872 4_3:-61920124 Msa0653740:five_prime_UTR
AAGAATAGAATTTGGTTCAA+TGG 0.354362 4_3:-61919949 Msa0653740:exon
ATGTGTCTGTTGTGTTTGTA+TGG 0.379186 4_3:+61920089 None:intergenic
GCTTCCCTACTTCCTCTGTT+AGG 0.394166 4_3:-61919122 Msa0653740:CDS
ATCTGTCCTTCTTATTTGGA+TGG 0.395000 4_3:+61920049 None:intergenic
AGAACGCCAATAACCAGATT+TGG 0.403234 4_3:+61919839 None:intergenic
CTGCTAAGAATGTCAATGTT+TGG 0.449566 4_3:-61919154 Msa0653740:CDS
CTGGTTATTGGCGTTCTGCT+TGG 0.452366 4_3:-61919833 Msa0653740:CDS
CAATTAGATGATCTTGTAGA+TGG 0.461691 4_3:-61919897 Msa0653740:CDS
ACAAAACTTTGTTATTCCTA+AGG 0.479528 4_3:+61918904 None:intergenic
AAGAATGTCAATGTTTGGTC+TGG 0.481539 4_3:-61919149 Msa0653740:CDS
AGTTGAGTTGTGACATTTGT+GGG 0.484821 4_3:-61920017 Msa0653740:five_prime_UTR
CCTGCCATCAGATCCAAATC+TGG 0.493186 4_3:-61919852 Msa0653740:CDS
AGCACCTAACAGAGGAAGTA+GGG 0.494279 4_3:+61919118 None:intergenic
GCAAAACCATCCAAATAAGA+AGG 0.519069 4_3:-61920055 Msa0653740:five_prime_UTR
GTTGCAGTGCTTTGTTTGAG+TGG 0.521993 4_3:+61919179 None:intergenic
ATAACCAGATTTGGATCTGA+TGG 0.545545 4_3:+61919848 None:intergenic
CCAGATTTGGATCTGATGGC+AGG 0.546146 4_3:+61919852 None:intergenic
AAGCACCTAACAGAGGAAGT+AGG 0.548357 4_3:+61919117 None:intergenic
AATAGAATTTGGTTCAATGG+AGG 0.550544 4_3:-61919946 Msa0653740:exon
AACTTGATATCATATCTGAC+AGG 0.569633 4_3:-61919203 Msa0653740:CDS
GCAAATGCACCGTATATAGA+GGG 0.587968 4_3:-61920123 Msa0653740:five_prime_UTR
TGTTAATTTAGGTGTGGAGG+TGG 0.603679 4_3:-61919258 Msa0653740:intron
AAGTTGAGTTGTGACATTTG+TGG 0.614686 4_3:-61920018 Msa0653740:five_prime_UTR
TAGGTGTGGAGGTGGCAGAG+AGG 0.632882 4_3:-61919250 Msa0653740:CDS
GAATGTTAATTTAGGTGTGG+AGG 0.640730 4_3:-61919261 Msa0653740:intron
AATGCTACAATACTAACATG+TGG 0.653249 4_3:+61918931 None:intergenic
GCAATGAAAGCACCTAACAG+AGG 0.656054 4_3:+61919110 None:intergenic
GAGAAGCAAGTATGATTGTG+TGG 0.683218 4_3:+61919066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAAAGAATAGAATT+TGG - chr4_3:61919024-61919043 Msa0653740:CDS 10.0%
!! AAGTTATTTAAAAAATTATG+AGG + chr4_3:61920026-61920045 None:intergenic 10.0%
!!! TTTTATTAAAGAATAGAATT+TGG - chr4_3:61919024-61919043 Msa0653740:CDS 10.0%
!! AAGTTATTTAAAAAATTATG+AGG + chr4_3:61920026-61920045 None:intergenic 10.0%
!! ATCATATATTAAGTTTACTA+TGG - chr4_3:61919276-61919295 Msa0653740:intron 15.0%
!! AAAAAAATAAGAACAAAGTA+AGG + chr4_3:61919302-61919321 None:intergenic 15.0%
!!! ACTTTGTTCTTATTTTTTTT+TGG - chr4_3:61919303-61919322 Msa0653740:intron 15.0%
!!! CTTTGTTCTTATTTTTTTTT+GGG - chr4_3:61919304-61919323 Msa0653740:intron 15.0%
!! TGAATTATGAATGTTAATTT+AGG - chr4_3:61919712-61919731 Msa0653740:intron 15.0%
!! AAATTGAAGGAAAAAAAAAA+CGG + chr4_3:61920000-61920019 None:intergenic 15.0%
!! ATCATATATTAAGTTTACTA+TGG - chr4_3:61919276-61919295 Msa0653740:intron 15.0%
!! AAAAAAATAAGAACAAAGTA+AGG + chr4_3:61919302-61919321 None:intergenic 15.0%
!!! ACTTTGTTCTTATTTTTTTT+TGG - chr4_3:61919303-61919322 Msa0653740:intron 15.0%
!!! CTTTGTTCTTATTTTTTTTT+GGG - chr4_3:61919304-61919323 Msa0653740:intron 15.0%
!! TGAATTATGAATGTTAATTT+AGG - chr4_3:61919712-61919731 Msa0653740:intron 15.0%
!! AAATTGAAGGAAAAAAAAAA+CGG + chr4_3:61920000-61920019 None:intergenic 15.0%
!!! TTTTTTTTTCCCTCTATATA+CGG + chr4_3:61918870-61918889 None:intergenic 20.0%
!! GTAAACTTAATATATGATCA+TGG + chr4_3:61919274-61919293 None:intergenic 20.0%
!!! GAATTTTTTGAATGATTCTT+AGG + chr4_3:61919373-61919392 None:intergenic 20.0%
!!! TCAAAAAATTCATAGTTTGT+CGG - chr4_3:61919382-61919401 Msa0653740:intron 20.0%
!!! AAAATGTGTAATTTTTGAGT+TGG + chr4_3:61919643-61919662 None:intergenic 20.0%
!! AATTATGAGGTAAAAATTGA+AGG + chr4_3:61920013-61920032 None:intergenic 20.0%
!!! TTTTTTTTTCCCTCTATATA+CGG + chr4_3:61918870-61918889 None:intergenic 20.0%
!! GTAAACTTAATATATGATCA+TGG + chr4_3:61919274-61919293 None:intergenic 20.0%
!!! GAATTTTTTGAATGATTCTT+AGG + chr4_3:61919373-61919392 None:intergenic 20.0%
!!! TCAAAAAATTCATAGTTTGT+CGG - chr4_3:61919382-61919401 Msa0653740:intron 20.0%
!!! AAAATGTGTAATTTTTGAGT+TGG + chr4_3:61919643-61919662 None:intergenic 20.0%
!! AATTATGAGGTAAAAATTGA+AGG + chr4_3:61920013-61920032 None:intergenic 20.0%
!! AAGAATAGAATTTGGTTCAA+TGG - chr4_3:61919032-61919051 Msa0653740:CDS 25.0%
!! CAAAAAATTCATAGTTTGTC+GGG - chr4_3:61919383-61919402 Msa0653740:intron 25.0%
!! ATTCATGATTTGTAAGTTGT+AGG + chr4_3:61919425-61919444 None:intergenic 25.0%
! ATTAGAGTATGTTCGTTAAA+TGG + chr4_3:61919542-61919561 None:intergenic 25.0%
! TAACGAACATACTCTAATAA+CGG - chr4_3:61919544-61919563 Msa0653740:intron 25.0%
! TATGAATGTTAATTTAGGTG+TGG - chr4_3:61919717-61919736 Msa0653740:intron 25.0%
!!! ATGTCATATTTTGGGATTAA+GGG - chr4_3:61919754-61919773 Msa0653740:intron 25.0%
!!! ACAAAACTTTGTTATTCCTA+AGG + chr4_3:61920080-61920099 None:intergenic 25.0%
!! AAGAATAGAATTTGGTTCAA+TGG - chr4_3:61919032-61919051 Msa0653740:CDS 25.0%
!! CAAAAAATTCATAGTTTGTC+GGG - chr4_3:61919383-61919402 Msa0653740:intron 25.0%
!! ATTCATGATTTGTAAGTTGT+AGG + chr4_3:61919425-61919444 None:intergenic 25.0%
! ATTAGAGTATGTTCGTTAAA+TGG + chr4_3:61919542-61919561 None:intergenic 25.0%
! TAACGAACATACTCTAATAA+CGG - chr4_3:61919544-61919563 Msa0653740:intron 25.0%
! TATGAATGTTAATTTAGGTG+TGG - chr4_3:61919717-61919736 Msa0653740:intron 25.0%
!!! ATGTCATATTTTGGGATTAA+GGG - chr4_3:61919754-61919773 Msa0653740:intron 25.0%
!!! ACAAAACTTTGTTATTCCTA+AGG + chr4_3:61920080-61920099 None:intergenic 25.0%
! AATAGAATTTGGTTCAATGG+AGG - chr4_3:61919035-61919054 Msa0653740:CDS 30.0%
CAATTAGATGATCTTGTAGA+TGG - chr4_3:61919084-61919103 Msa0653740:CDS 30.0%
! TTTTCCTTTAAGCCAAAGAT+TGG - chr4_3:61919222-61919241 Msa0653740:CDS 30.0%
TTTCCTTTAAGCCAAAGATT+GGG - chr4_3:61919223-61919242 Msa0653740:CDS 30.0%
AGAAAATCAATTTCAGTTGG+TGG + chr4_3:61919331-61919350 None:intergenic 30.0%
GGAAGAAAATCAATTTCAGT+TGG + chr4_3:61919334-61919353 None:intergenic 30.0%
!!! GATGTCATATTTTGGGATTA+AGG - chr4_3:61919753-61919772 Msa0653740:intron 30.0%
AACTTGATATCATATCTGAC+AGG - chr4_3:61919778-61919797 Msa0653740:intron 30.0%
!!! TTCATTGCTGATTCTTTTCT+TGG - chr4_3:61919886-61919905 Msa0653740:CDS 30.0%
!!! CACTTTCTTACCTTTTTTAG+AGG - chr4_3:61919967-61919986 Msa0653740:five_prime_UTR 30.0%
AATGCTACAATACTAACATG+TGG + chr4_3:61920053-61920072 None:intergenic 30.0%
! TATTGTAGCATTTTGTCCTT+AGG - chr4_3:61920061-61920080 Msa0653740:five_prime_UTR 30.0%
! AATAGAATTTGGTTCAATGG+AGG - chr4_3:61919035-61919054 Msa0653740:CDS 30.0%
CAATTAGATGATCTTGTAGA+TGG - chr4_3:61919084-61919103 Msa0653740:CDS 30.0%
! TTTTCCTTTAAGCCAAAGAT+TGG - chr4_3:61919222-61919241 Msa0653740:CDS 30.0%
TTTCCTTTAAGCCAAAGATT+GGG - chr4_3:61919223-61919242 Msa0653740:CDS 30.0%
AGAAAATCAATTTCAGTTGG+TGG + chr4_3:61919331-61919350 None:intergenic 30.0%
GGAAGAAAATCAATTTCAGT+TGG + chr4_3:61919334-61919353 None:intergenic 30.0%
!!! GATGTCATATTTTGGGATTA+AGG - chr4_3:61919753-61919772 Msa0653740:intron 30.0%
AACTTGATATCATATCTGAC+AGG - chr4_3:61919778-61919797 Msa0653740:intron 30.0%
!!! TTCATTGCTGATTCTTTTCT+TGG - chr4_3:61919886-61919905 Msa0653740:CDS 30.0%
!!! CACTTTCTTACCTTTTTTAG+AGG - chr4_3:61919967-61919986 Msa0653740:five_prime_UTR 30.0%
AATGCTACAATACTAACATG+TGG + chr4_3:61920053-61920072 None:intergenic 30.0%
! TATTGTAGCATTTTGTCCTT+AGG - chr4_3:61920061-61920080 Msa0653740:five_prime_UTR 30.0%
ATGTGTCTGTTGTGTTTGTA+TGG + chr4_3:61918895-61918914 None:intergenic 35.0%
!! CTTATTTGGATGGTTTTGCT+TGG + chr4_3:61918925-61918944 None:intergenic 35.0%
GCAAAACCATCCAAATAAGA+AGG - chr4_3:61918926-61918945 Msa0653740:three_prime_UTR 35.0%
! ATCTGTCCTTCTTATTTGGA+TGG + chr4_3:61918935-61918954 None:intergenic 35.0%
! AAGTTGAGTTGTGACATTTG+TGG - chr4_3:61918963-61918982 Msa0653740:exon 35.0%
! AGTTGAGTTGTGACATTTGT+GGG - chr4_3:61918964-61918983 Msa0653740:exon 35.0%
ATAACCAGATTTGGATCTGA+TGG + chr4_3:61919136-61919155 None:intergenic 35.0%
TCAGATCCAAATCTGGTTAT+TGG - chr4_3:61919136-61919155 Msa0653740:CDS 35.0%
TTAGGCTAACATATTTGACG+AGG + chr4_3:61919355-61919374 None:intergenic 35.0%
GAATGTTAATTTAGGTGTGG+AGG - chr4_3:61919720-61919739 Msa0653740:intron 35.0%
! CAGAGAGGATGTCATATTTT+GGG - chr4_3:61919746-61919765 Msa0653740:intron 35.0%
CTGCTAAGAATGTCAATGTT+TGG - chr4_3:61919827-61919846 Msa0653740:CDS 35.0%
AAGAATGTCAATGTTTGGTC+TGG - chr4_3:61919832-61919851 Msa0653740:CDS 35.0%
TGCTTCTCTCATCTATATCT+TGG - chr4_3:61919930-61919949 Msa0653740:CDS 35.0%
! CGGTAAAAAGCCTCTAAAAA+AGG + chr4_3:61919980-61919999 None:intergenic 35.0%
ATGTGTCTGTTGTGTTTGTA+TGG + chr4_3:61918895-61918914 None:intergenic 35.0%
!! CTTATTTGGATGGTTTTGCT+TGG + chr4_3:61918925-61918944 None:intergenic 35.0%
GCAAAACCATCCAAATAAGA+AGG - chr4_3:61918926-61918945 Msa0653740:three_prime_UTR 35.0%
! ATCTGTCCTTCTTATTTGGA+TGG + chr4_3:61918935-61918954 None:intergenic 35.0%
! AAGTTGAGTTGTGACATTTG+TGG - chr4_3:61918963-61918982 Msa0653740:exon 35.0%
! AGTTGAGTTGTGACATTTGT+GGG - chr4_3:61918964-61918983 Msa0653740:exon 35.0%
ATAACCAGATTTGGATCTGA+TGG + chr4_3:61919136-61919155 None:intergenic 35.0%
TCAGATCCAAATCTGGTTAT+TGG - chr4_3:61919136-61919155 Msa0653740:CDS 35.0%
TTAGGCTAACATATTTGACG+AGG + chr4_3:61919355-61919374 None:intergenic 35.0%
GAATGTTAATTTAGGTGTGG+AGG - chr4_3:61919720-61919739 Msa0653740:intron 35.0%
! CAGAGAGGATGTCATATTTT+GGG - chr4_3:61919746-61919765 Msa0653740:intron 35.0%
CTGCTAAGAATGTCAATGTT+TGG - chr4_3:61919827-61919846 Msa0653740:CDS 35.0%
AAGAATGTCAATGTTTGGTC+TGG - chr4_3:61919832-61919851 Msa0653740:CDS 35.0%
TGCTTCTCTCATCTATATCT+TGG - chr4_3:61919930-61919949 Msa0653740:CDS 35.0%
! CGGTAAAAAGCCTCTAAAAA+AGG + chr4_3:61919980-61919999 None:intergenic 35.0%
AGCAAATGCACCGTATATAG+AGG - chr4_3:61918857-61918876 Msa0653740:three_prime_UTR 40.0%
GCAAATGCACCGTATATAGA+GGG - chr4_3:61918858-61918877 Msa0653740:three_prime_UTR 40.0%
!! TTGGATGGTTTTGCTTGGTT+AGG + chr4_3:61918920-61918939 None:intergenic 40.0%
CTGGATCTGTCCTTCTTATT+TGG + chr4_3:61918939-61918958 None:intergenic 40.0%
AGAACGCCAATAACCAGATT+TGG + chr4_3:61919145-61919164 None:intergenic 40.0%
CGTTCTGCTTGGTTTATCAT+AGG - chr4_3:61919159-61919178 Msa0653740:CDS 40.0%
! TGAACAAGCTTTAGTTGTGG+TGG + chr4_3:61919483-61919502 None:intergenic 40.0%
!! AATGGACTACTTCAGAATGC+TGG + chr4_3:61919524-61919543 None:intergenic 40.0%
TGTTAATTTAGGTGTGGAGG+TGG - chr4_3:61919723-61919742 Msa0653740:intron 40.0%
! GCAGAGAGGATGTCATATTT+TGG - chr4_3:61919745-61919764 Msa0653740:intron 40.0%
GAGAAGCAAGTATGATTGTG+TGG + chr4_3:61919918-61919937 None:intergenic 40.0%
AGCAAATGCACCGTATATAG+AGG - chr4_3:61918857-61918876 Msa0653740:three_prime_UTR 40.0%
GCAAATGCACCGTATATAGA+GGG - chr4_3:61918858-61918877 Msa0653740:three_prime_UTR 40.0%
!! TTGGATGGTTTTGCTTGGTT+AGG + chr4_3:61918920-61918939 None:intergenic 40.0%
CTGGATCTGTCCTTCTTATT+TGG + chr4_3:61918939-61918958 None:intergenic 40.0%
AGAACGCCAATAACCAGATT+TGG + chr4_3:61919145-61919164 None:intergenic 40.0%
CGTTCTGCTTGGTTTATCAT+AGG - chr4_3:61919159-61919178 Msa0653740:CDS 40.0%
! TGAACAAGCTTTAGTTGTGG+TGG + chr4_3:61919483-61919502 None:intergenic 40.0%
!! AATGGACTACTTCAGAATGC+TGG + chr4_3:61919524-61919543 None:intergenic 40.0%
TGTTAATTTAGGTGTGGAGG+TGG - chr4_3:61919723-61919742 Msa0653740:intron 40.0%
! GCAGAGAGGATGTCATATTT+TGG - chr4_3:61919745-61919764 Msa0653740:intron 40.0%
GAGAAGCAAGTATGATTGTG+TGG + chr4_3:61919918-61919937 None:intergenic 40.0%
! GTCACAACTCAACTTGCTTC+TGG + chr4_3:61918958-61918977 None:intergenic 45.0%
! GCACCCAATCTTTGGCTTAA+AGG + chr4_3:61919229-61919248 None:intergenic 45.0%
! TTCATAGTTTGTCGGGCCTT+TGG - chr4_3:61919390-61919409 Msa0653740:intron 45.0%
! TTGTAGGCTTGTTCCTCCAA+AGG + chr4_3:61919409-61919428 None:intergenic 45.0%
! GCGTGAACAAGCTTTAGTTG+TGG + chr4_3:61919486-61919505 None:intergenic 45.0%
! ACTAAAGCTTGTTCACGCGA+AGG - chr4_3:61919488-61919507 Msa0653740:intron 45.0%
!! GTTGCAGTGCTTTGTTTGAG+TGG + chr4_3:61919805-61919824 None:intergenic 45.0%
AGCACCTAACAGAGGAAGTA+GGG + chr4_3:61919866-61919885 None:intergenic 45.0%
AAGCACCTAACAGAGGAAGT+AGG + chr4_3:61919867-61919886 None:intergenic 45.0%
!! GCAATGAAAGCACCTAACAG+AGG + chr4_3:61919874-61919893 None:intergenic 45.0%
! GTCACAACTCAACTTGCTTC+TGG + chr4_3:61918958-61918977 None:intergenic 45.0%
! GCACCCAATCTTTGGCTTAA+AGG + chr4_3:61919229-61919248 None:intergenic 45.0%
! TTCATAGTTTGTCGGGCCTT+TGG - chr4_3:61919390-61919409 Msa0653740:intron 45.0%
! TTGTAGGCTTGTTCCTCCAA+AGG + chr4_3:61919409-61919428 None:intergenic 45.0%
! GCGTGAACAAGCTTTAGTTG+TGG + chr4_3:61919486-61919505 None:intergenic 45.0%
! ACTAAAGCTTGTTCACGCGA+AGG - chr4_3:61919488-61919507 Msa0653740:intron 45.0%
!! GTTGCAGTGCTTTGTTTGAG+TGG + chr4_3:61919805-61919824 None:intergenic 45.0%
AGCACCTAACAGAGGAAGTA+GGG + chr4_3:61919866-61919885 None:intergenic 45.0%
AAGCACCTAACAGAGGAAGT+AGG + chr4_3:61919867-61919886 None:intergenic 45.0%
!! GCAATGAAAGCACCTAACAG+AGG + chr4_3:61919874-61919893 None:intergenic 45.0%
CCAGATTTGGATCTGATGGC+AGG + chr4_3:61919132-61919151 None:intergenic 50.0%
CCTGCCATCAGATCCAAATC+TGG - chr4_3:61919129-61919148 Msa0653740:CDS 50.0%
CTGGTTATTGGCGTTCTGCT+TGG - chr4_3:61919148-61919167 Msa0653740:CDS 50.0%
AAGCCAAAGATTGGGTGCAG+AGG - chr4_3:61919231-61919250 Msa0653740:CDS 50.0%
AGCCAAAGATTGGGTGCAGA+GGG - chr4_3:61919232-61919251 Msa0653740:CDS 50.0%
AACCCTCTGCACCCAATCTT+TGG + chr4_3:61919237-61919256 None:intergenic 50.0%
! ATAGTTTGTCGGGCCTTTGG+AGG - chr4_3:61919393-61919412 Msa0653740:intron 50.0%
GCTTCCCTACTTCCTCTGTT+AGG - chr4_3:61919859-61919878 Msa0653740:CDS 50.0%
CCAGATTTGGATCTGATGGC+AGG + chr4_3:61919132-61919151 None:intergenic 50.0%
CCTGCCATCAGATCCAAATC+TGG - chr4_3:61919129-61919148 Msa0653740:CDS 50.0%
CTGGTTATTGGCGTTCTGCT+TGG - chr4_3:61919148-61919167 Msa0653740:CDS 50.0%
AAGCCAAAGATTGGGTGCAG+AGG - chr4_3:61919231-61919250 Msa0653740:CDS 50.0%
AGCCAAAGATTGGGTGCAGA+GGG - chr4_3:61919232-61919251 Msa0653740:CDS 50.0%
AACCCTCTGCACCCAATCTT+TGG + chr4_3:61919237-61919256 None:intergenic 50.0%
! ATAGTTTGTCGGGCCTTTGG+AGG - chr4_3:61919393-61919412 Msa0653740:intron 50.0%
GCTTCCCTACTTCCTCTGTT+AGG - chr4_3:61919859-61919878 Msa0653740:CDS 50.0%
TAGGTGTGGAGGTGGCAGAG+AGG - chr4_3:61919731-61919750 Msa0653740:intron 60.0%
TAGGTGTGGAGGTGGCAGAG+AGG - chr4_3:61919731-61919750 Msa0653740:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 61918836 61920167 61918836 ID=Msa0653740;Name=Msa0653740
chr4_3 mRNA 61918836 61920167 61918836 ID=Msa0653740-mRNA-1;Parent=Msa0653740;Name=Msa0653740-mRNA-1;_AED=0.32;_eAED=0.32;_QI=215|1|1|1|1|1|2|129|144
chr4_3 exon 61918836 61919269 61918836 ID=Msa0653740-mRNA-1:exon:17123;Parent=Msa0653740-mRNA-1
chr4_3 exon 61919823 61920167 61919823 ID=Msa0653740-mRNA-1:exon:17122;Parent=Msa0653740-mRNA-1
chr4_3 five_prime_UTR 61919953 61920167 61919953 ID=Msa0653740-mRNA-1:five_prime_utr;Parent=Msa0653740-mRNA-1
chr4_3 CDS 61919823 61919952 61919823 ID=Msa0653740-mRNA-1:cds;Parent=Msa0653740-mRNA-1
chr4_3 CDS 61918965 61919269 61918965 ID=Msa0653740-mRNA-1:cds;Parent=Msa0653740-mRNA-1
chr4_3 three_prime_UTR 61918836 61918964 61918836 ID=Msa0653740-mRNA-1:three_prime_utr;Parent=Msa0653740-mRNA-1
Gene Sequence

>Msa0653740

ATGGAGGAATACAATGAAGTTTTGTTAGAAGCTCAATTAGATGATCTTGTAGATGGTGCTGTTGATTATAGTAGACAACCTGCCATCAGATCCAAATCTGGTTATTGGCGTTCTGCTTGGTTTATCATAGGTGTGGAGGTGGCAGAGAGGATGTCATATTTTGGGATTAAGGGAAACTTGATATCATATCTGACAGGACCACTCAAACAAAGCACTGCAACAGCTGCTAAGAATGTCAATGTTTGGTCTGGAACAGCTTCCCTACTTCCTCTGTTAGGTGCTTTCATTGCTGATTCTTTTCTTGGACGTTACCACACAATCATACTTGCTTCTCTCATCTATATCTTGGTTAGTTCAATTCTTCACTTTCTTACCTTTTTTAGAGGCTTTTTACCGTTTTTTTTTTCCTTCAATTTTTACCTCATAATTTTTTAA

Protein sequence

>Msa0653740

MEEYNEVLLEAQLDDLVDGAVDYSRQPAIRSKSGYWRSAWFIIGVEVAERMSYFGIKGNLISYLTGPLKQSTATAAKNVNVWSGTASLLPLLGAFIADSFLGRYHTIILASLIYILVSSILHFLTFFRGFLPFFFSFNFYLIIF*