AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455740 MtrunA17_Chr3g0102691 94.949 99 4 1 1 99 1 98 2.64e-62 192
Msa0455740 MtrunA17_Chr4g0075941 58.000 100 42 0 1 100 1 100 7.00e-39 127
Msa0455740 MtrunA17_Chr4g0076441 58.000 100 42 0 1 100 1 100 3.50e-37 127
Msa0455740 MtrunA17_Chr2g0290661 58.586 99 41 0 2 100 7 105 2.93e-36 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455740 AT1G55840.1 58.586 99 41 0 2 100 7 105 6.57e-41 137
Msa0455740 AT5G47730.4 56.566 99 43 0 2 100 7 105 4.35e-35 122
Msa0455740 AT5G47730.1 56.566 99 43 0 2 100 7 105 4.35e-35 122
Msa0455740 AT1G55840.2 66.216 74 25 0 24 97 2 75 5.42e-33 116
Msa0455740 AT5G47730.2 62.000 50 19 0 51 100 1 50 2.53e-17 74.7
Msa0455740 AT5G47730.3 62.000 50 19 0 51 100 1 50 2.53e-17 74.7

Find 25 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGTCTTTGATGGAAAA+TGG 0.286433 3_3:+48777517 Msa0455740:CDS
TAAGCAGTTGCAGTCTTTGA+TGG 0.306038 3_3:+48777510 Msa0455740:CDS
GCAACAGAAGATTGCATTCA+AGG 0.343791 3_3:+48777640 Msa0455740:CDS
ATGAATAAATAAAGTAATAT+AGG 0.344726 3_3:-48777200 None:intergenic
GCTTCCTATGTTGAAACTAT+AGG 0.401617 3_3:-48777284 None:intergenic
TTGTACAAATCCGCAGGAAT+TGG 0.405764 3_3:-48778821 None:intergenic
GTGCGAGATTCTCAACTCAT+AGG 0.475225 3_3:+48778848 Msa0455740:CDS
TCTCAACTCATAGGAATATC+CGG 0.479633 3_3:+48778857 Msa0455740:CDS
GGGATACCCTACTGAAATGT+TGG 0.504243 3_3:+48778378 Msa0455740:CDS
TATATTTCAGAATCTGCACC+AGG 0.513856 3_3:+48778357 Msa0455740:intron
ACATTTCAGTAGGGTATCCC+TGG 0.537126 3_3:-48778375 None:intergenic
GGCACGATTTCTCAAAGCTA+GGG 0.540499 3_3:+48778399 Msa0455740:CDS
AATATCCGGTTACACAAAAG+AGG 0.551985 3_3:+48778871 Msa0455740:CDS
AATCGTGCCAACATTTCAGT+AGG 0.554479 3_3:-48778385 None:intergenic
TGATTGTTTACATTGGAGAG+TGG 0.555854 3_3:+48778561 Msa0455740:CDS
GATTTCTCAAAGCTAGGGAC+GGG 0.571459 3_3:+48778404 Msa0455740:CDS
TGGCACGATTTCTCAAAGCT+AGG 0.581370 3_3:+48778398 Msa0455740:CDS
AGTTAATTGATTGTTTACAT+TGG 0.588126 3_3:+48778554 Msa0455740:intron
CGATTTCTCAAAGCTAGGGA+CGG 0.592978 3_3:+48778403 Msa0455740:CDS
ACAGGTTTGTACAAATCCGC+AGG 0.597594 3_3:-48778827 None:intergenic
ATGAGTTGAGAATCTCGCAC+AGG 0.608198 3_3:-48778845 None:intergenic
ACATCCTATAGTTTCAACAT+AGG 0.611986 3_3:+48777280 Msa0455740:five_prime_UTR
ATCGTGCCAACATTTCAGTA+GGG 0.638800 3_3:-48778384 None:intergenic
ATAGCAGAAACCAATTCCTG+CGG 0.702765 3_3:+48778811 Msa0455740:intron
ATATTTCAGAATCTGCACCA+GGG 0.705098 3_3:+48778358 Msa0455740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATAAATAAAGTAATAT+AGG - chr3_3:48777203-48777222 None:intergenic 10.0%
!!! ATTTTTAAATTTCTTTATGA+AGG + chr3_3:48777748-48777767 Msa0455740:intron 10.0%
!! ATGAATAAATAAAGTAATAT+AGG - chr3_3:48777203-48777222 None:intergenic 10.0%
!!! ATTTTTAAATTTCTTTATGA+AGG + chr3_3:48777748-48777767 Msa0455740:intron 10.0%
!!! GAAAAAGATTAAATTTTTAC+AGG - chr3_3:48777415-48777434 None:intergenic 15.0%
!! AAAAATTGAAATTTGCAAAT+GGG - chr3_3:48777463-48777482 None:intergenic 15.0%
!! AAAAAATTGAAATTTGCAAA+TGG - chr3_3:48777464-48777483 None:intergenic 15.0%
!!! AAGTTGTTAAGATTTTTTTT+AGG + chr3_3:48777829-48777848 Msa0455740:intron 15.0%
!!! AGTTGTTAAGATTTTTTTTA+GGG + chr3_3:48777830-48777849 Msa0455740:intron 15.0%
!!! ATTCTGAAATATAAAATGAA+AGG - chr3_3:48778350-48778369 None:intergenic 15.0%
!!! GAAAAAGATTAAATTTTTAC+AGG - chr3_3:48777415-48777434 None:intergenic 15.0%
!! AAAAATTGAAATTTGCAAAT+GGG - chr3_3:48777463-48777482 None:intergenic 15.0%
!! AAAAAATTGAAATTTGCAAA+TGG - chr3_3:48777464-48777483 None:intergenic 15.0%
!!! AAGTTGTTAAGATTTTTTTT+AGG + chr3_3:48777829-48777848 Msa0455740:intron 15.0%
!!! AGTTGTTAAGATTTTTTTTA+GGG + chr3_3:48777830-48777849 Msa0455740:intron 15.0%
!!! ATTCTGAAATATAAAATGAA+AGG - chr3_3:48778350-48778369 None:intergenic 15.0%
!! GTAAAGAAAGAAAAATTAGT+GGG - chr3_3:48777243-48777262 None:intergenic 20.0%
!! TGTAAAGAAAGAAAAATTAG+TGG - chr3_3:48777244-48777263 None:intergenic 20.0%
!!! TTTGTTTTGTTTTTCACATA+TGG - chr3_3:48777337-48777356 None:intergenic 20.0%
!!! TTTTCATATATGCTATAACT+TGG - chr3_3:48778158-48778177 None:intergenic 20.0%
!!! TTAAGTTTTTTATTCGAACA+TGG + chr3_3:48778250-48778269 Msa0455740:intron 20.0%
!! AGTTAATTGATTGTTTACAT+TGG + chr3_3:48778554-48778573 Msa0455740:intron 20.0%
!! GTAAAGAAAGAAAAATTAGT+GGG - chr3_3:48777243-48777262 None:intergenic 20.0%
!! TGTAAAGAAAGAAAAATTAG+TGG - chr3_3:48777244-48777263 None:intergenic 20.0%
!!! TTTGTTTTGTTTTTCACATA+TGG - chr3_3:48777337-48777356 None:intergenic 20.0%
!!! TTTTCATATATGCTATAACT+TGG - chr3_3:48778158-48778177 None:intergenic 20.0%
!!! TTAAGTTTTTTATTCGAACA+TGG + chr3_3:48778250-48778269 Msa0455740:intron 20.0%
!! AGTTAATTGATTGTTTACAT+TGG + chr3_3:48778554-48778573 Msa0455740:intron 20.0%
!!! TTTTTCAGTATAGAAGAAGA+TGG + chr3_3:48777480-48777499 Msa0455740:intron 25.0%
! TTGTTGATCATTGACAAATT+TGG + chr3_3:48777591-48777610 Msa0455740:intron 25.0%
! GTGAAATTGATCTTGATTTA+TGG + chr3_3:48777799-48777818 Msa0455740:intron 25.0%
!!! GTTAAGATTTTTTTTAGGGA+TGG + chr3_3:48777834-48777853 Msa0455740:intron 25.0%
! TACCAAAACAAAAATTGTAG+AGG - chr3_3:48777977-48777996 None:intergenic 25.0%
!!! TTTGGTAATTCATTTTTGAC+CGG + chr3_3:48777990-48778009 Msa0455740:intron 25.0%
! ACATACTATTTACTTAACTG+AGG - chr3_3:48778276-48778295 None:intergenic 25.0%
! AATATAAAATGAAAGGCTTC+AGG - chr3_3:48778343-48778362 None:intergenic 25.0%
! AAGAAAAAACTGTGAAATGA+GGG - chr3_3:48778620-48778639 None:intergenic 25.0%
!!! TTTTTCAGTATAGAAGAAGA+TGG + chr3_3:48777480-48777499 Msa0455740:intron 25.0%
! TTGTTGATCATTGACAAATT+TGG + chr3_3:48777591-48777610 Msa0455740:intron 25.0%
! GTGAAATTGATCTTGATTTA+TGG + chr3_3:48777799-48777818 Msa0455740:intron 25.0%
!!! GTTAAGATTTTTTTTAGGGA+TGG + chr3_3:48777834-48777853 Msa0455740:intron 25.0%
! TACCAAAACAAAAATTGTAG+AGG - chr3_3:48777977-48777996 None:intergenic 25.0%
!!! TTTGGTAATTCATTTTTGAC+CGG + chr3_3:48777990-48778009 Msa0455740:intron 25.0%
! ACATACTATTTACTTAACTG+AGG - chr3_3:48778276-48778295 None:intergenic 25.0%
! AATATAAAATGAAAGGCTTC+AGG - chr3_3:48778343-48778362 None:intergenic 25.0%
! AAGAAAAAACTGTGAAATGA+GGG - chr3_3:48778620-48778639 None:intergenic 25.0%
ACATCCTATAGTTTCAACAT+AGG + chr3_3:48777280-48777299 Msa0455740:five_prime_UTR 30.0%
TAGAAAAACAGAAGAATGCA+AGG - chr3_3:48777563-48777582 None:intergenic 30.0%
ACATTGAAAGATCCCTATTT+AGG - chr3_3:48777928-48777947 None:intergenic 30.0%
!! AGCCTCTACAATTTTTGTTT+TGG + chr3_3:48777972-48777991 Msa0455740:intron 30.0%
! TTGTTTTCATTAGCAACCAA+AGG - chr3_3:48778071-48778090 None:intergenic 30.0%
GCGAATAATATTAGTAAGAC+GGG - chr3_3:48778300-48778319 None:intergenic 30.0%
GGCGAATAATATTAGTAAGA+CGG - chr3_3:48778301-48778320 None:intergenic 30.0%
!!! ACTAACCATTTTTTGAGCTT+TGG - chr3_3:48778437-48778456 None:intergenic 30.0%
TCTTAGATGGAATTTCAGAT+AGG + chr3_3:48778479-48778498 Msa0455740:intron 30.0%
!! TGAGATTGACAAAGTTTTAG+CGG + chr3_3:48778588-48778607 Msa0455740:CDS 30.0%
GAAGAAAAAACTGTGAAATG+AGG - chr3_3:48778621-48778640 None:intergenic 30.0%
! TTACGCATCTGAATCTATTT+TGG + chr3_3:48778705-48778724 Msa0455740:intron 30.0%
TTGGTTTCTGCTATACAAAA+AGG - chr3_3:48778805-48778824 None:intergenic 30.0%
ACATCCTATAGTTTCAACAT+AGG + chr3_3:48777280-48777299 Msa0455740:five_prime_UTR 30.0%
TAGAAAAACAGAAGAATGCA+AGG - chr3_3:48777563-48777582 None:intergenic 30.0%
ACATTGAAAGATCCCTATTT+AGG - chr3_3:48777928-48777947 None:intergenic 30.0%
!! AGCCTCTACAATTTTTGTTT+TGG + chr3_3:48777972-48777991 Msa0455740:intron 30.0%
! TTGTTTTCATTAGCAACCAA+AGG - chr3_3:48778071-48778090 None:intergenic 30.0%
GCGAATAATATTAGTAAGAC+GGG - chr3_3:48778300-48778319 None:intergenic 30.0%
GGCGAATAATATTAGTAAGA+CGG - chr3_3:48778301-48778320 None:intergenic 30.0%
!!! ACTAACCATTTTTTGAGCTT+TGG - chr3_3:48778437-48778456 None:intergenic 30.0%
TCTTAGATGGAATTTCAGAT+AGG + chr3_3:48778479-48778498 Msa0455740:intron 30.0%
!! TGAGATTGACAAAGTTTTAG+CGG + chr3_3:48778588-48778607 Msa0455740:CDS 30.0%
GAAGAAAAAACTGTGAAATG+AGG - chr3_3:48778621-48778640 None:intergenic 30.0%
! TTACGCATCTGAATCTATTT+TGG + chr3_3:48778705-48778724 Msa0455740:intron 30.0%
TTGGTTTCTGCTATACAAAA+AGG - chr3_3:48778805-48778824 None:intergenic 30.0%
GCTTCCTATGTTGAAACTAT+AGG - chr3_3:48777287-48777306 None:intergenic 35.0%
! AGCTAGAATCTTTTCACACA+AGG + chr3_3:48777356-48777375 Msa0455740:five_prime_UTR 35.0%
! GCTAGAATCTTTTCACACAA+GGG + chr3_3:48777357-48777376 Msa0455740:five_prime_UTR 35.0%
TACAGGATTGAGACAGAAAA+AGG - chr3_3:48777398-48777417 None:intergenic 35.0%
TTGCAGTCTTTGATGGAAAA+TGG + chr3_3:48777517-48777536 Msa0455740:CDS 35.0%
AGAAGATTGCATTCAAGGTT+TGG + chr3_3:48777645-48777664 Msa0455740:intron 35.0%
!!! GTTTGGTTTTTGCTTGATCT+TGG + chr3_3:48777662-48777681 Msa0455740:intron 35.0%
TTAGGGATGGTTGATTGTAA+AGG + chr3_3:48777847-48777866 Msa0455740:intron 35.0%
TAGGGATGGTTGATTGTAAA+GGG + chr3_3:48777848-48777867 Msa0455740:intron 35.0%
TAGTGATTCTGCACCTAAAT+AGG + chr3_3:48777912-48777931 Msa0455740:intron 35.0%
AGTGATTCTGCACCTAAATA+GGG + chr3_3:48777913-48777932 Msa0455740:intron 35.0%
ACAACTTGCATATCTTCCTT+TGG + chr3_3:48778052-48778071 Msa0455740:intron 35.0%
CTTGGTTTCATAAGCTATCT+TGG - chr3_3:48778140-48778159 None:intergenic 35.0%
TTCAGGACCAAAAAAAACTC+AGG - chr3_3:48778326-48778345 None:intergenic 35.0%
TATATTTCAGAATCTGCACC+AGG + chr3_3:48778357-48778376 Msa0455740:intron 35.0%
ATATTTCAGAATCTGCACCA+GGG + chr3_3:48778358-48778377 Msa0455740:intron 35.0%
TGTTGCCAAAGCTCAAAAAA+TGG + chr3_3:48778429-48778448 Msa0455740:CDS 35.0%
! ATCTAAGACTTCACTAGACA+TGG - chr3_3:48778467-48778486 None:intergenic 35.0%
ATGTCTAGTGAAGTCTTAGA+TGG + chr3_3:48778466-48778485 Msa0455740:intron 35.0%
AGATGGAATTTCAGATAGGT+TGG + chr3_3:48778483-48778502 Msa0455740:intron 35.0%
TGATTGTTTACATTGGAGAG+TGG + chr3_3:48778561-48778580 Msa0455740:CDS 35.0%
TCTCAACTCATAGGAATATC+CGG + chr3_3:48778857-48778876 Msa0455740:CDS 35.0%
AATATCCGGTTACACAAAAG+AGG + chr3_3:48778871-48778890 Msa0455740:CDS 35.0%
! TAGTACCTCTTTTGTGTAAC+CGG - chr3_3:48778879-48778898 None:intergenic 35.0%
GCTTCCTATGTTGAAACTAT+AGG - chr3_3:48777287-48777306 None:intergenic 35.0%
! AGCTAGAATCTTTTCACACA+AGG + chr3_3:48777356-48777375 Msa0455740:five_prime_UTR 35.0%
! GCTAGAATCTTTTCACACAA+GGG + chr3_3:48777357-48777376 Msa0455740:five_prime_UTR 35.0%
TACAGGATTGAGACAGAAAA+AGG - chr3_3:48777398-48777417 None:intergenic 35.0%
TTGCAGTCTTTGATGGAAAA+TGG + chr3_3:48777517-48777536 Msa0455740:CDS 35.0%
AGAAGATTGCATTCAAGGTT+TGG + chr3_3:48777645-48777664 Msa0455740:intron 35.0%
!!! GTTTGGTTTTTGCTTGATCT+TGG + chr3_3:48777662-48777681 Msa0455740:intron 35.0%
TTAGGGATGGTTGATTGTAA+AGG + chr3_3:48777847-48777866 Msa0455740:intron 35.0%
TAGGGATGGTTGATTGTAAA+GGG + chr3_3:48777848-48777867 Msa0455740:intron 35.0%
TAGTGATTCTGCACCTAAAT+AGG + chr3_3:48777912-48777931 Msa0455740:intron 35.0%
AGTGATTCTGCACCTAAATA+GGG + chr3_3:48777913-48777932 Msa0455740:intron 35.0%
ACAACTTGCATATCTTCCTT+TGG + chr3_3:48778052-48778071 Msa0455740:intron 35.0%
CTTGGTTTCATAAGCTATCT+TGG - chr3_3:48778140-48778159 None:intergenic 35.0%
TTCAGGACCAAAAAAAACTC+AGG - chr3_3:48778326-48778345 None:intergenic 35.0%
TATATTTCAGAATCTGCACC+AGG + chr3_3:48778357-48778376 Msa0455740:intron 35.0%
ATATTTCAGAATCTGCACCA+GGG + chr3_3:48778358-48778377 Msa0455740:intron 35.0%
TGTTGCCAAAGCTCAAAAAA+TGG + chr3_3:48778429-48778448 Msa0455740:CDS 35.0%
! ATCTAAGACTTCACTAGACA+TGG - chr3_3:48778467-48778486 None:intergenic 35.0%
ATGTCTAGTGAAGTCTTAGA+TGG + chr3_3:48778466-48778485 Msa0455740:intron 35.0%
AGATGGAATTTCAGATAGGT+TGG + chr3_3:48778483-48778502 Msa0455740:intron 35.0%
TGATTGTTTACATTGGAGAG+TGG + chr3_3:48778561-48778580 Msa0455740:CDS 35.0%
TCTCAACTCATAGGAATATC+CGG + chr3_3:48778857-48778876 Msa0455740:CDS 35.0%
AATATCCGGTTACACAAAAG+AGG + chr3_3:48778871-48778890 Msa0455740:CDS 35.0%
! TAGTACCTCTTTTGTGTAAC+CGG - chr3_3:48778879-48778898 None:intergenic 35.0%
! CATATGGCTCTCTCTGTTTT+TGG - chr3_3:48777321-48777340 None:intergenic 40.0%
GGATTGAGACAGAAAAAGGA+AGG - chr3_3:48777394-48777413 None:intergenic 40.0%
TAAGCAGTTGCAGTCTTTGA+TGG + chr3_3:48777510-48777529 Msa0455740:CDS 40.0%
GCAACAGAAGATTGCATTCA+AGG + chr3_3:48777640-48777659 Msa0455740:CDS 40.0%
! AGACTCTTTGAGAGAGCTAA+TGG + chr3_3:48778027-48778046 Msa0455740:intron 40.0%
GGACCAAAAAAAACTCAGGA+CGG - chr3_3:48778322-48778341 None:intergenic 40.0%
ATCGTGCCAACATTTCAGTA+GGG - chr3_3:48778387-48778406 None:intergenic 40.0%
AATCGTGCCAACATTTCAGT+AGG - chr3_3:48778388-48778407 None:intergenic 40.0%
!! TCAGATAGGTTGGTTACTCT+TGG + chr3_3:48778493-48778512 Msa0455740:intron 40.0%
ATAGCAGAAACCAATTCCTG+CGG + chr3_3:48778811-48778830 Msa0455740:intron 40.0%
TTGTACAAATCCGCAGGAAT+TGG - chr3_3:48778824-48778843 None:intergenic 40.0%
! CATATGGCTCTCTCTGTTTT+TGG - chr3_3:48777321-48777340 None:intergenic 40.0%
GGATTGAGACAGAAAAAGGA+AGG - chr3_3:48777394-48777413 None:intergenic 40.0%
TAAGCAGTTGCAGTCTTTGA+TGG + chr3_3:48777510-48777529 Msa0455740:CDS 40.0%
GCAACAGAAGATTGCATTCA+AGG + chr3_3:48777640-48777659 Msa0455740:CDS 40.0%
! AGACTCTTTGAGAGAGCTAA+TGG + chr3_3:48778027-48778046 Msa0455740:intron 40.0%
GGACCAAAAAAAACTCAGGA+CGG - chr3_3:48778322-48778341 None:intergenic 40.0%
ATCGTGCCAACATTTCAGTA+GGG - chr3_3:48778387-48778406 None:intergenic 40.0%
AATCGTGCCAACATTTCAGT+AGG - chr3_3:48778388-48778407 None:intergenic 40.0%
!! TCAGATAGGTTGGTTACTCT+TGG + chr3_3:48778493-48778512 Msa0455740:intron 40.0%
ATAGCAGAAACCAATTCCTG+CGG + chr3_3:48778811-48778830 Msa0455740:intron 40.0%
TTGTACAAATCCGCAGGAAT+TGG - chr3_3:48778824-48778843 None:intergenic 40.0%
!!! TCGCCGTCCTGAGTTTTTTT+TGG + chr3_3:48778316-48778335 Msa0455740:intron 45.0%
! ACATTTCAGTAGGGTATCCC+TGG - chr3_3:48778378-48778397 None:intergenic 45.0%
GGGATACCCTACTGAAATGT+TGG + chr3_3:48778378-48778397 Msa0455740:CDS 45.0%
TGGCACGATTTCTCAAAGCT+AGG + chr3_3:48778398-48778417 Msa0455740:CDS 45.0%
GGCACGATTTCTCAAAGCTA+GGG + chr3_3:48778399-48778418 Msa0455740:CDS 45.0%
CGATTTCTCAAAGCTAGGGA+CGG + chr3_3:48778403-48778422 Msa0455740:CDS 45.0%
GATTTCTCAAAGCTAGGGAC+GGG + chr3_3:48778404-48778423 Msa0455740:CDS 45.0%
ACAGGTTTGTACAAATCCGC+AGG - chr3_3:48778830-48778849 None:intergenic 45.0%
! ATGAGTTGAGAATCTCGCAC+AGG - chr3_3:48778848-48778867 None:intergenic 45.0%
GTGCGAGATTCTCAACTCAT+AGG + chr3_3:48778848-48778867 Msa0455740:CDS 45.0%
!!! TCGCCGTCCTGAGTTTTTTT+TGG + chr3_3:48778316-48778335 Msa0455740:intron 45.0%
! ACATTTCAGTAGGGTATCCC+TGG - chr3_3:48778378-48778397 None:intergenic 45.0%
GGGATACCCTACTGAAATGT+TGG + chr3_3:48778378-48778397 Msa0455740:CDS 45.0%
TGGCACGATTTCTCAAAGCT+AGG + chr3_3:48778398-48778417 Msa0455740:CDS 45.0%
GGCACGATTTCTCAAAGCTA+GGG + chr3_3:48778399-48778418 Msa0455740:CDS 45.0%
CGATTTCTCAAAGCTAGGGA+CGG + chr3_3:48778403-48778422 Msa0455740:CDS 45.0%
GATTTCTCAAAGCTAGGGAC+GGG + chr3_3:48778404-48778423 Msa0455740:CDS 45.0%
ACAGGTTTGTACAAATCCGC+AGG - chr3_3:48778830-48778849 None:intergenic 45.0%
! ATGAGTTGAGAATCTCGCAC+AGG - chr3_3:48778848-48778867 None:intergenic 45.0%
GTGCGAGATTCTCAACTCAT+AGG + chr3_3:48778848-48778867 Msa0455740:CDS 45.0%
CTCTCAAAGAGTCTCACACG+TGG - chr3_3:48778021-48778040 None:intergenic 50.0%
CTCTCAAAGAGTCTCACACG+TGG - chr3_3:48778021-48778040 None:intergenic 50.0%
AGTCTCACACGTGGTTACGC+CGG - chr3_3:48778012-48778031 None:intergenic 55.0%
AGTCTCACACGTGGTTACGC+CGG - chr3_3:48778012-48778031 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 48777179 48778910 48777179 ID=Msa0455740;Name=Msa0455740
chr3_3 mRNA 48777179 48778910 48777179 ID=Msa0455740-mRNA-1;Parent=Msa0455740;Name=Msa0455740-mRNA-1;_AED=0.41;_eAED=0.41;_QI=211|0.8|0.83|1|0.8|0.66|6|0|100
chr3_3 exon 48777179 48777378 48777179 ID=Msa0455740-mRNA-1:exon:9141;Parent=Msa0455740-mRNA-1
chr3_3 exon 48777488 48777538 48777488 ID=Msa0455740-mRNA-1:exon:9142;Parent=Msa0455740-mRNA-1
chr3_3 exon 48777633 48777661 48777633 ID=Msa0455740-mRNA-1:exon:9143;Parent=Msa0455740-mRNA-1
chr3_3 exon 48778367 48778450 48778367 ID=Msa0455740-mRNA-1:exon:9144;Parent=Msa0455740-mRNA-1
chr3_3 exon 48778556 48778609 48778556 ID=Msa0455740-mRNA-1:exon:9145;Parent=Msa0455740-mRNA-1
chr3_3 exon 48778815 48778910 48778815 ID=Msa0455740-mRNA-1:exon:9146;Parent=Msa0455740-mRNA-1
chr3_3 five_prime_UTR 48777179 48777378 48777179 ID=Msa0455740-mRNA-1:five_prime_utr;Parent=Msa0455740-mRNA-1
chr3_3 five_prime_UTR 48777488 48777498 48777488 ID=Msa0455740-mRNA-1:five_prime_utr;Parent=Msa0455740-mRNA-1
chr3_3 CDS 48777499 48777538 48777499 ID=Msa0455740-mRNA-1:cds;Parent=Msa0455740-mRNA-1
chr3_3 CDS 48777633 48777661 48777633 ID=Msa0455740-mRNA-1:cds;Parent=Msa0455740-mRNA-1
chr3_3 CDS 48778367 48778450 48778367 ID=Msa0455740-mRNA-1:cds;Parent=Msa0455740-mRNA-1
chr3_3 CDS 48778556 48778609 48778556 ID=Msa0455740-mRNA-1:cds;Parent=Msa0455740-mRNA-1
chr3_3 CDS 48778815 48778910 48778815 ID=Msa0455740-mRNA-1:cds;Parent=Msa0455740-mRNA-1
Gene Sequence

>Msa0455740

ATGGATGCAATTAAGCAGTTGCAGTCTTTGATGGAAAATGTTGATGAGCAACAGAAGATTGCATTCAAGAATCTGCACCAGGGATACCCTACTGAAATGTTGGCACGATTTCTCAAAGCTAGGGACGGGAATGTTGCCAAAGCTCAAAAAATGTTAATTGATTGTTTACATTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAGCGCAGAAACCAATTCCTGCGGATTTGTACAAACCTGTGCGAGATTCTCAACTCATAGGAATATCCGGTTACACAAAAGAGGTACTACTCATATTTTAG

Protein sequence

>Msa0455740

MDAIKQLQSLMENVDEQQKIAFKNLHQGYPTEMLARFLKARDGNVAKAQKMLIDCLHWRVENEIDKVLAQKPIPADLYKPVRDSQLIGISGYTKEVLLIF*