AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653900 MtrunA17_Chr4g0048511 80.992 363 38 6 1 337 1 358 0.0 551
Msa0653900 MtrunA17_Chr2g0281071 54.494 356 132 11 1 337 1 345 1.01e-101 303
Msa0653900 MtrunA17_Chr2g0323411 47.658 363 127 14 1 337 1 326 6.11e-90 272
Msa0653900 MtrunA17_Chr4g0039971 55.981 209 82 4 1 208 2 201 1.30e-76 239
Msa0653900 MtrunA17_Chr3g0115821 74.627 134 33 1 1 134 1 133 1.99e-76 238
Msa0653900 MtrunA17_Chr7g0217741 74.627 134 33 1 1 134 1 133 4.03e-75 233
Msa0653900 MtrunA17_Chr6g0453471 69.737 152 45 1 1 152 1 151 5.19e-75 235
Msa0653900 MtrunA17_Chr4g0042671 75.758 132 31 1 1 132 1 131 4.01e-74 234
Msa0653900 MtrunA17_Chr5g0410961 69.281 153 43 2 1 150 1 152 7.00e-73 229
Msa0653900 MtrunA17_Chr5g0395281 54.146 205 73 5 1 186 1 203 1.75e-68 216
Msa0653900 MtrunA17_Chr4g0037141 55.729 192 82 3 1 192 1 189 1.57e-66 211
Msa0653900 MtrunA17_Chr8g0349261 70.769 130 37 1 1 129 1 130 2.70e-66 211
Msa0653900 MtrunA17_Chr3g0103281 68.657 134 41 1 1 134 1 133 3.31e-65 209
Msa0653900 MtrunA17_Chr6g0452271 60.390 154 58 2 1 154 1 151 2.34e-63 204
Msa0653900 MtrunA17_Chr4g0057031 68.217 129 40 1 1 129 1 128 6.48e-63 201
Msa0653900 MtrunA17_Chr3g0131121 61.184 152 58 1 1 152 1 151 4.94e-62 199
Msa0653900 MtrunA17_Chr1g0187761 74.359 117 29 1 1 117 1 116 1.27e-61 197
Msa0653900 MtrunA17_Chr1g0167691 72.881 118 31 1 1 118 1 117 3.88e-61 196
Msa0653900 MtrunA17_Chr8g0385321 66.667 129 42 1 1 129 1 128 4.87e-61 197
Msa0653900 MtrunA17_Chr1g0203411 71.795 117 32 1 1 117 1 116 1.04e-60 196
Msa0653900 MtrunA17_Chr5g0434571 68.992 129 39 1 1 129 37 164 1.27e-60 197
Msa0653900 MtrunA17_Chr3g0110351 69.531 128 38 1 1 128 1 127 2.09e-60 196
Msa0653900 MtrunA17_Chr1g0167661 72.034 118 32 1 1 118 1 117 5.22e-60 193
Msa0653900 MtrunA17_Chr7g0274581 66.387 119 39 1 1 119 1 118 8.86e-60 191
Msa0653900 MtrunA17_Chr5g0435101 66.400 125 41 1 3 127 2 125 1.07e-59 191
Msa0653900 MtrunA17_Chr7g0228891 54.545 176 71 4 1 168 1 175 1.86e-59 192
Msa0653900 MtrunA17_Chr7g0261281 71.795 117 32 1 1 117 1 116 3.09e-59 192
Msa0653900 MtrunA17_Chr3g0121241 67.200 125 40 1 5 129 35 158 1.02e-58 191
Msa0653900 MtrunA17_Chr5g0417821 68.067 119 38 0 12 130 6 124 1.44e-57 188
Msa0653900 MtrunA17_Chr1g0193371 54.167 168 70 2 1 168 1 161 3.19e-57 189
Msa0653900 MtrunA17_Chr1g0193801 64.341 129 45 1 1 129 1 128 3.55e-57 190
Msa0653900 MtrunA17_Chr7g0270891 65.116 129 44 1 1 129 1 128 4.45e-57 189
Msa0653900 MtrunA17_Chr2g0311221 74.775 111 27 1 2 112 4 113 5.09e-57 187
Msa0653900 MtrunA17_Chr4g0058631 62.016 129 48 1 1 129 1 128 2.66e-56 187
Msa0653900 MtrunA17_Chr8g0346561 68.908 119 36 1 1 119 1 118 3.10e-56 185
Msa0653900 MtrunA17_Chr7g0275911 70.085 117 34 1 1 117 1 116 3.39e-56 183
Msa0653900 MtrunA17_Chr7g0254411 65.873 126 40 2 1 124 1 125 3.66e-56 186
Msa0653900 MtrunA17_Chr4g0068061 69.231 117 35 1 1 117 1 116 1.22e-55 184
Msa0653900 MtrunA17_Chr2g0323351 68.908 119 36 1 1 119 1 118 2.54e-55 181
Msa0653900 MtrunA17_Chr7g0217221 65.546 119 40 1 1 119 1 118 2.83e-55 181
Msa0653900 MtrunA17_Chr2g0309911 64.228 123 43 1 6 128 5 126 5.09e-55 182
Msa0653900 MtrunA17_Chr4g0022931 64.957 117 41 0 1 117 1 117 5.20e-55 181
Msa0653900 MtrunA17_Chr4g0060721 65.812 117 39 1 1 117 2 117 6.63e-55 182
Msa0653900 MtrunA17_Chr1g0211161 59.091 132 54 0 1 132 1 132 8.91e-55 179
Msa0653900 MtrunA17_Chr3g0092401 65.833 120 40 1 1 120 2 120 1.78e-54 181
Msa0653900 MtrunA17_Chr4g0070611 46.117 206 90 4 1 198 1 193 2.06e-54 180
Msa0653900 MtrunA17_Chr4g0022911 62.712 118 44 0 1 118 1 118 2.44e-54 179
Msa0653900 MtrunA17_Chr3g0117091 59.848 132 52 1 1 132 1 131 2.70e-54 181
Msa0653900 MtrunA17_Chr4g0022901 63.559 118 43 0 1 118 1 118 3.37e-54 179
Msa0653900 MtrunA17_Chr4g0070641 68.376 117 36 1 1 117 1 116 3.26e-53 172
Msa0653900 MtrunA17_Chr4g0044421 62.400 125 47 0 3 127 2 126 3.62e-53 173
Msa0653900 MtrunA17_Chr7g0271241 64.341 129 45 1 1 129 1 128 4.10e-53 179
Msa0653900 MtrunA17_Chr1g0194951 51.497 167 78 2 1 167 1 164 7.28e-53 178
Msa0653900 MtrunA17_Chr1g0151941 58.779 131 50 3 1 128 1 130 9.49e-53 174
Msa0653900 MtrunA17_Chr8g0387421 63.866 119 42 1 1 119 1 118 7.15e-52 174
Msa0653900 MtrunA17_Chr6g0453211 65.179 112 38 1 1 112 1 111 3.70e-51 172
Msa0653900 MtrunA17_Chr4g0032401 65.789 114 39 0 10 123 14 127 1.92e-50 171
Msa0653900 MtrunA17_Chr4g0028311 61.069 131 48 3 1 130 1 129 1.98e-50 170
Msa0653900 MtrunA17_Chr8g0342521 61.290 124 47 1 1 124 1 123 2.30e-50 171
Msa0653900 MtrunA17_Chr5g0397231 66.667 111 36 1 1 111 1 110 1.02e-49 169
Msa0653900 MtrunA17_Chr2g0330041 60.317 126 49 1 1 126 1 125 1.07e-49 171
Msa0653900 MtrunA17_Chr8g0342541 60.484 124 48 1 1 124 1 123 1.25e-49 169
Msa0653900 MtrunA17_Chr7g0264641 60.331 121 46 2 1 120 1 120 1.70e-49 166
Msa0653900 MtrunA17_Chr5g0400821 62.185 119 43 2 1 118 1 118 8.80e-49 166
Msa0653900 MtrunA17_Chr3g0135311 62.185 119 43 2 1 118 1 118 1.24e-48 166
Msa0653900 MtrunA17_Chr1g0152011 62.185 119 43 2 1 118 1 118 1.38e-48 166
Msa0653900 MtrunA17_Chr2g0328771 66.667 105 35 0 13 117 20 124 1.41e-48 165
Msa0653900 MtrunA17_Chr2g0327351 59.286 140 53 3 1 139 1 137 2.56e-48 165
Msa0653900 MtrunA17_Chr3g0088461 67.619 105 34 0 13 117 22 126 7.55e-48 164
Msa0653900 MtrunA17_Chr4g0022881 61.739 115 43 1 1 115 1 114 8.32e-48 160
Msa0653900 MtrunA17_Chr4g0022891 63.158 114 41 1 1 114 1 113 1.95e-47 160
Msa0653900 MtrunA17_Chr4g0054391 66.667 111 35 2 1 110 1 110 6.13e-47 160
Msa0653900 MtrunA17_Chr7g0269831 66.667 117 38 1 1 117 1 116 1.29e-46 161
Msa0653900 MtrunA17_Chr4g0055981 63.158 114 42 0 13 126 55 168 2.51e-46 157
Msa0653900 MtrunA17_Chr1g0203441 59.664 119 48 0 1 119 1 119 6.21e-46 157
Msa0653900 MtrunA17_Chr4g0042611 71.910 89 24 1 1 89 1 88 8.19e-46 150
Msa0653900 MtrunA17_Chr1g0209661 58.621 116 48 0 8 123 22 137 1.14e-44 155
Msa0653900 MtrunA17_Chr3g0099131 64.423 104 37 0 13 116 41 144 1.50e-44 160
Msa0653900 MtrunA17_Chr8g0342481 58.824 119 47 2 1 118 1 118 2.54e-44 156
Msa0653900 MtrunA17_Chr7g0247131 63.063 111 38 1 45 155 10 117 3.00e-44 152
Msa0653900 MtrunA17_Chr4g0072751 61.607 112 41 2 1 111 1 111 2.27e-43 152
Msa0653900 MtrunA17_Chr6g0487491 55.906 127 46 3 1 118 1 126 4.80e-43 149
Msa0653900 MtrunA17_Chr3g0080861 58.182 110 45 1 13 122 37 145 1.66e-42 154
Msa0653900 MtrunA17_Chr5g0434931 56.757 111 48 0 8 118 30 140 1.78e-42 148
Msa0653900 MtrunA17_Chr8g0354661 61.538 104 40 0 13 116 37 140 2.50e-42 154
Msa0653900 MtrunA17_Chr8g0343831 62.136 103 39 0 15 117 10 112 4.48e-42 146
Msa0653900 MtrunA17_Chr1g0154031 60.577 104 41 0 13 116 76 179 5.91e-42 150
Msa0653900 MtrunA17_Chr5g0434911 57.273 110 47 0 9 118 17 126 8.13e-42 146
Msa0653900 MtrunA17_Chr7g0228231 61.905 105 40 0 13 117 14 118 1.01e-41 144
Msa0653900 MtrunA17_Chr2g0322521 61.261 111 42 1 12 122 28 137 1.40e-41 149
Msa0653900 MtrunA17_Chr5g0434831 58.559 111 46 0 8 118 2 112 1.41e-41 143
Msa0653900 MtrunA17_Chr6g0470971 59.434 106 43 0 14 119 15 120 2.60e-41 145
Msa0653900 MtrunA17_Chr6g0450101 55.932 118 51 1 1 117 1 118 3.02e-41 143
Msa0653900 MtrunA17_Chr1g0186061 59.223 103 42 0 14 116 21 123 3.80e-41 144
Msa0653900 MtrunA17_Chr1g0194291 55.172 116 52 0 8 123 16 131 1.03e-40 143
Msa0653900 MtrunA17_Chr1g0168661 59.223 103 42 0 14 116 22 124 1.29e-40 143
Msa0653900 MtrunA17_Chr1g0180391 60.000 105 42 0 13 117 19 123 2.49e-40 141
Msa0653900 MtrunA17_Chr7g0220341 58.716 109 43 1 12 118 24 132 2.92e-40 142
Msa0653900 MtrunA17_Chr5g0434841 57.658 111 47 0 8 118 15 125 3.95e-40 143
Msa0653900 MtrunA17_Chr7g0240821 61.386 101 39 0 17 117 5 105 9.17e-40 140
Msa0653900 MtrunA17_Chr1g0194301 53.153 111 52 0 13 123 33 143 1.28e-39 141
Msa0653900 MtrunA17_Chr5g0395221 73.750 80 21 0 10 89 9 88 7.60e-39 132
Msa0653900 MtrunA17_Chr7g0228991 56.075 107 47 0 12 118 28 134 1.14e-38 138
Msa0653900 MtrunA17_Chr8g0360111 56.604 106 46 0 8 113 20 125 1.51e-38 137
Msa0653900 MtrunA17_Chr5g0440781 52.586 116 53 2 14 128 13 127 9.78e-38 133
Msa0653900 MtrunA17_Chr2g0327821 53.846 104 48 0 13 116 6 109 1.49e-37 134
Msa0653900 MtrunA17_Chr2g0293911 58.559 111 46 0 13 123 24 134 1.80e-37 136
Msa0653900 MtrunA17_Chr2g0294811 66.292 89 29 1 1 89 1 88 1.88e-37 130
Msa0653900 MtrunA17_Chr5g0440761 52.586 116 53 2 14 128 13 127 2.54e-37 134
Msa0653900 MtrunA17_Chr5g0441141 52.586 116 53 2 14 128 13 127 2.79e-37 134
Msa0653900 MtrunA17_Chr2g0323321 63.441 93 32 1 1 93 1 91 5.90e-37 129
Msa0653900 MtrunA17_Chr4g0068921 58.333 108 45 0 8 115 19 126 6.02e-37 131
Msa0653900 MtrunA17_Chr4g0030881 52.727 110 45 1 14 116 8 117 1.32e-36 132
Msa0653900 MtrunA17_Chr5g0441131 50.833 120 57 2 14 132 10 128 1.49e-35 127
Msa0653900 MtrunA17_Chr1g0192411 52.727 110 51 1 13 122 12 120 3.38e-35 132
Msa0653900 MtrunA17_Chr8g0342511 63.636 88 31 1 1 88 1 87 6.78e-34 120
Msa0653900 MtrunA17_Chr3g0099141 60.241 83 33 0 13 95 40 122 8.29e-33 119
Msa0653900 MtrunA17_Chr8g0334881 49.541 109 53 2 13 120 10 117 2.83e-32 122
Msa0653900 MtrunA17_Chr8g0342461 60.440 91 34 2 1 90 1 90 3.14e-31 114
Msa0653900 MtrunA17_Chr8g0342531 58.889 90 36 1 1 90 1 89 3.25e-31 115
Msa0653900 MtrunA17_Chr8g0342471 60.440 91 34 2 1 90 1 90 8.80e-31 113
Msa0653900 MtrunA17_Chr4g0013361 49.074 108 53 2 13 119 10 116 1.54e-30 117
Msa0653900 MtrunA17_Chr7g0238631 50.000 108 53 1 10 117 108 214 2.17e-30 121
Msa0653900 MtrunA17_Chr6g0454921 46.847 111 58 1 15 125 15 124 4.10e-30 114
Msa0653900 MtrunA17_Chr4g0008551 49.565 115 51 3 15 128 38 146 6.77e-30 117
Msa0653900 MtrunA17_Chr5g0401731 46.789 109 57 1 15 123 15 122 8.99e-30 116
Msa0653900 MtrunA17_Chr3g0093811 51.111 90 44 0 45 134 14 103 2.63e-28 110
Msa0653900 MtrunA17_Chr5g0429661 44.444 117 62 2 1 116 108 222 3.60e-28 112
Msa0653900 MtrunA17_Chr3g0133601 48.039 102 52 1 15 116 37 137 5.11e-28 108
Msa0653900 MtrunA17_Chr4g0053431 47.059 102 53 1 15 116 5 105 7.07e-27 107
Msa0653900 MtrunA17_Chr7g0229101 64.286 70 25 0 45 114 4 73 3.41e-26 103
Msa0653900 MtrunA17_Chr6g0453751 52.128 94 36 2 10 94 17 110 3.54e-26 101
Msa0653900 MtrunA17_Chr3g0139671 42.593 108 61 1 10 117 80 186 1.15e-25 108
Msa0653900 MtrunA17_Chr4g0058991 44.348 115 61 2 3 116 197 309 1.42e-25 106
Msa0653900 MtrunA17_Chr7g0229131 58.108 74 31 0 45 118 4 77 1.58e-25 100
Msa0653900 MtrunA17_Chr3g0117511 47.059 102 53 1 15 116 183 283 1.72e-25 106
Msa0653900 MtrunA17_Chr1g0157731 43.519 108 60 1 10 117 86 192 1.03e-24 105
Msa0653900 MtrunA17_Chr5g0397841 47.525 101 52 1 10 110 105 204 1.14e-24 103
Msa0653900 MtrunA17_Chr6g0480581 38.194 144 83 3 15 158 4 141 1.49e-24 100
Msa0653900 MtrunA17_Chr5g0434901 61.765 68 26 0 47 114 7 74 2.69e-24 95.9
Msa0653900 MtrunA17_Chr5g0425591 53.659 82 37 1 14 94 10 91 2.90e-24 95.1
Msa0653900 MtrunA17_Chr5g0417621 38.514 148 74 3 8 139 123 269 1.79e-23 100
Msa0653900 MtrunA17_Chr5g0437321 41.509 106 61 1 8 113 12 116 2.39e-23 97.8
Msa0653900 MtrunA17_Chr4g0042501 47.059 102 53 1 15 116 105 205 3.51e-23 99.4
Msa0653900 MtrunA17_Chr7g0228531 46.078 102 53 2 15 116 220 319 3.95e-23 99.4
Msa0653900 MtrunA17_Chr6g0460661 40.323 124 70 3 9 131 10 130 7.94e-22 90.5
Msa0653900 MtrunA17_Chr6g0460671 45.098 102 55 1 15 116 99 199 1.21e-21 94.4
Msa0653900 MtrunA17_Chr7g0228401 49.438 89 44 1 26 114 290 377 2.04e-21 94.7
Msa0653900 MtrunA17_Chr1g0177901 47.191 89 46 1 26 114 5 92 2.50e-20 87.8
Msa0653900 MtrunA17_Chr7g0254261 46.078 102 54 1 15 116 89 189 3.11e-20 90.1
Msa0653900 MtrunA17_Chr3g0125801 43.750 112 60 2 6 116 7 116 4.30e-20 89.0
Msa0653900 MtrunA17_Chr5g0395231 58.333 60 25 0 79 138 5 64 8.21e-20 87.4
Msa0653900 MtrunA17_Chr7g0228481 42.857 105 56 3 15 119 220 320 9.80e-20 89.7
Msa0653900 MtrunA17_Chr7g0238651 40.777 103 59 1 15 115 7 109 1.62e-19 88.2
Msa0653900 MtrunA17_Chr1g0193901 53.968 63 28 1 8 69 6 68 8.49e-19 80.9
Msa0653900 MtrunA17_Chr1g0193891 53.968 63 28 1 8 69 6 68 8.49e-19 80.9
Msa0653900 MtrunA17_Chr1g0193871 53.968 63 28 1 8 69 6 68 8.49e-19 80.9
Msa0653900 MtrunA17_Chr1g0193881 53.968 63 28 1 8 69 6 68 8.49e-19 80.9
Msa0653900 MtrunA17_Chr7g0233061 38.261 115 50 2 15 120 180 282 4.65e-18 84.0
Msa0653900 MtrunA17_Chr5g0416341 40.404 99 58 1 18 116 29 126 3.72e-17 82.0
Msa0653900 MtrunA17_Chr4g0042621 72.727 44 12 0 89 132 14 57 1.31e-16 79.7
Msa0653900 MtrunA17_Chr3g0145551 78.378 37 8 0 93 129 2 38 9.14e-15 68.9
Msa0653900 MtrunA17_Chr8g0362231 37.374 99 61 1 18 116 25 122 1.13e-14 74.7
Msa0653900 MtrunA17_Chr5g0434871 56.818 44 19 0 75 118 2 45 3.12e-14 67.0
Msa0653900 MtrunA17_Chr7g0247141 60.417 48 17 2 1 47 1 47 5.83e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653900 AT4G21440.1 53.719 363 128 11 1 337 1 349 6.29e-112 329
Msa0653900 AT4G05100.1 50.139 359 119 8 1 337 1 321 2.00e-96 289
Msa0653900 AT5G54230.1 58.621 232 87 6 13 239 12 239 1.56e-82 253
Msa0653900 AT4G28110.1 83.846 130 20 1 1 130 1 129 1.50e-81 249
Msa0653900 AT5G16770.4 73.469 147 38 1 1 147 1 146 7.97e-79 244
Msa0653900 AT5G16770.3 73.469 147 38 1 1 147 1 146 7.97e-79 244
Msa0653900 AT5G16770.1 73.469 147 38 1 1 147 1 146 2.13e-78 243
Msa0653900 AT5G16770.2 73.469 147 38 1 1 147 1 146 2.13e-78 243
Msa0653900 AT3G02940.2 77.206 136 30 1 1 136 1 135 8.06e-77 238
Msa0653900 AT3G02940.1 77.206 136 30 1 1 136 1 135 1.88e-76 238
Msa0653900 AT3G02940.3 77.206 136 30 1 1 136 1 135 1.88e-76 238
Msa0653900 AT1G34670.1 76.866 134 30 1 1 134 1 133 5.18e-76 238
Msa0653900 AT3G01140.2 51.515 231 105 4 1 230 1 225 7.90e-74 232
Msa0653900 AT4G17785.2 70.629 143 40 1 1 143 1 141 3.35e-73 230
Msa0653900 AT4G17785.1 70.629 143 40 1 1 143 1 141 3.59e-73 231
Msa0653900 AT5G15310.4 73.846 130 33 1 1 130 1 129 3.61e-73 227
Msa0653900 AT5G15310.1 73.846 130 33 1 1 130 1 129 4.35e-73 229
Msa0653900 AT5G15310.2 73.846 130 33 1 1 130 1 129 5.86e-73 229
Msa0653900 AT5G10280.1 69.403 134 40 1 1 134 1 133 3.59e-71 224
Msa0653900 AT3G01140.1 50.877 228 105 4 4 230 47 268 3.49e-70 224
Msa0653900 AT5G65230.1 71.212 132 37 1 1 132 1 131 2.36e-68 216
Msa0653900 AT3G61250.1 70.543 129 37 1 1 129 1 128 1.89e-67 214
Msa0653900 AT4G34990.1 71.318 129 36 1 1 129 1 128 9.05e-67 211
Msa0653900 AT1G74080.1 69.697 132 39 1 1 132 1 131 1.51e-65 210
Msa0653900 AT1G18570.1 70.079 127 38 0 1 127 1 127 3.60e-65 210
Msa0653900 AT4G38620.1 70.543 129 37 1 1 129 1 128 8.55e-65 206
Msa0653900 AT4G22680.1 71.318 129 36 1 1 129 1 128 1.69e-64 205
Msa0653900 AT1G22640.1 61.392 158 50 2 1 158 1 147 2.49e-64 204
Msa0653900 AT5G56110.1 70.543 129 37 1 1 129 1 128 3.16e-64 206
Msa0653900 AT5G60890.1 59.740 154 59 2 1 152 1 153 4.25e-64 205
Msa0653900 AT2G16720.1 69.291 127 38 1 1 127 1 126 8.77e-64 203
Msa0653900 AT4G12350.1 53.333 180 80 2 1 180 1 176 1.04e-63 204
Msa0653900 AT5G61420.2 68.992 129 39 1 1 129 1 128 2.92e-63 205
Msa0653900 AT5G07690.1 68.217 129 40 1 1 129 1 128 4.55e-63 204
Msa0653900 AT4G09460.1 70.079 127 37 1 1 127 1 126 6.08e-63 200
Msa0653900 AT1G35515.1 67.969 128 40 1 1 128 1 127 6.38e-62 197
Msa0653900 AT5G07700.1 67.442 129 41 1 1 129 1 128 1.79e-61 200
Msa0653900 AT5G07700.2 67.442 129 41 1 1 129 1 128 1.79e-61 200
Msa0653900 AT3G23250.1 73.504 117 30 1 1 117 1 116 1.84e-61 198
Msa0653900 AT1G66230.1 68.992 129 39 1 1 129 1 128 1.07e-60 196
Msa0653900 AT3G13540.1 67.460 126 40 1 4 129 15 139 1.12e-60 195
Msa0653900 AT5G16600.1 68.217 129 40 1 1 129 1 128 3.56e-60 196
Msa0653900 AT2G31180.1 73.504 117 30 1 1 117 1 116 9.85e-60 192
Msa0653900 AT1G57560.1 42.194 237 116 4 1 222 1 231 5.63e-59 192
Msa0653900 AT1G57560.2 56.774 155 65 2 1 154 1 154 6.27e-59 191
Msa0653900 AT1G16490.1 71.552 116 32 1 2 117 4 118 2.99e-58 189
Msa0653900 AT1G56160.1 73.276 116 30 1 2 117 4 118 4.75e-58 189
Msa0653900 AT3G28470.1 64.179 134 47 1 1 134 1 133 5.06e-58 190
Msa0653900 AT5G26660.1 64.122 131 46 1 1 131 1 130 5.77e-58 191
Msa0653900 AT1G06180.1 71.795 117 32 1 1 117 1 116 9.98e-58 187
Msa0653900 AT1G08810.1 57.764 161 62 3 1 158 1 158 7.29e-57 186
Msa0653900 AT1G79180.1 72.414 116 31 1 2 117 4 118 9.16e-57 186
Msa0653900 AT1G09540.1 65.116 129 44 1 1 129 1 128 1.44e-56 188
Msa0653900 AT5G14340.1 50.820 183 88 2 1 183 13 193 1.70e-56 185
Msa0653900 AT5G62470.2 65.833 120 40 1 1 120 1 119 5.95e-56 186
Msa0653900 AT4G01680.3 64.062 128 45 1 1 128 1 127 9.58e-56 182
Msa0653900 AT1G74650.1 66.667 120 39 1 1 120 1 119 1.59e-55 184
Msa0653900 AT3G47600.1 65.000 120 41 1 1 120 1 119 2.53e-55 184
Msa0653900 AT4G01680.1 64.567 127 44 1 1 127 1 126 3.35e-55 183
Msa0653900 AT1G74430.1 60.465 129 50 1 1 129 1 128 5.82e-55 181
Msa0653900 AT5G62320.1 61.654 133 43 2 2 127 3 134 6.29e-55 180
Msa0653900 AT1G18710.1 60.465 129 50 1 1 129 1 128 2.30e-54 179
Msa0653900 AT5G62470.1 65.833 120 39 2 1 120 1 118 3.67e-54 181
Msa0653900 AT3G62610.1 69.231 117 35 1 1 117 1 116 4.53e-54 181
Msa0653900 AT3G12720.1 63.415 123 44 1 6 128 16 137 8.12e-54 179
Msa0653900 AT2G47460.1 70.085 117 34 1 1 117 1 116 1.09e-53 181
Msa0653900 AT3G28910.1 63.415 123 44 1 1 123 1 122 1.10e-53 179
Msa0653900 AT5G49330.1 68.376 117 36 1 1 117 1 116 1.84e-53 179
Msa0653900 AT3G12820.1 67.521 117 37 1 3 119 5 120 1.93e-53 176
Msa0653900 AT1G63910.1 57.971 138 57 1 1 138 1 137 7.53e-52 176
Msa0653900 AT4G01680.2 58.993 139 44 2 1 127 1 138 1.07e-51 175
Msa0653900 AT1G79180.2 57.047 149 30 2 2 117 4 151 1.43e-50 171
Msa0653900 AT3G13890.2 63.559 118 42 1 1 118 1 117 3.24e-50 171
Msa0653900 AT5G23000.1 63.866 119 41 2 1 118 1 118 1.86e-48 166
Msa0653900 AT5G57620.1 63.025 119 42 2 1 118 1 118 2.36e-48 166
Msa0653900 AT3G49690.1 62.185 119 43 2 1 118 1 118 4.76e-48 164
Msa0653900 AT5G12870.1 66.667 108 36 0 13 120 18 125 7.43e-48 162
Msa0653900 AT4G37780.1 60.504 119 45 2 1 118 1 118 1.63e-47 162
Msa0653900 AT5G65790.1 62.185 119 43 2 1 118 1 118 1.86e-47 164
Msa0653900 AT3G13890.1 59.055 127 42 2 1 118 1 126 3.19e-47 164
Msa0653900 AT2G36890.1 58.594 128 51 2 1 127 1 127 4.58e-47 161
Msa0653900 AT2G36890.2 58.594 128 51 2 1 127 42 168 8.47e-47 162
Msa0653900 AT5G14750.1 48.148 162 77 3 8 168 11 166 9.20e-47 157
Msa0653900 AT3G08500.1 62.609 115 40 1 6 117 20 134 5.63e-46 159
Msa0653900 AT5G35550.1 63.559 118 42 1 1 117 1 118 6.88e-46 157
Msa0653900 AT2G26960.1 51.333 150 62 3 13 162 20 158 8.41e-46 161
Msa0653900 AT2G32460.1 60.177 113 45 0 4 116 9 121 2.37e-45 161
Msa0653900 AT2G32460.2 63.810 105 38 0 12 116 5 109 3.02e-45 161
Msa0653900 AT5G55020.1 62.727 110 40 1 13 122 26 134 4.55e-45 161
Msa0653900 AT5G40330.1 57.798 109 46 0 9 117 8 116 8.22e-44 150
Msa0653900 AT3G11440.2 58.772 114 46 1 9 122 37 149 1.46e-43 156
Msa0653900 AT1G48000.1 45.833 168 73 2 13 180 32 181 1.63e-43 150
Msa0653900 AT5G40350.1 59.633 109 44 0 13 121 17 125 5.02e-43 148
Msa0653900 AT3G11440.3 60.185 108 43 0 9 116 37 144 6.77e-43 156
Msa0653900 AT3G11440.4 60.185 108 43 0 9 116 37 144 6.77e-43 156
Msa0653900 AT3G11440.1 60.185 108 43 0 9 116 37 144 6.77e-43 156
Msa0653900 AT4G26930.1 60.000 110 43 1 13 122 19 127 7.34e-43 152
Msa0653900 AT5G06100.1 58.036 112 46 1 11 122 30 140 2.04e-42 153
Msa0653900 AT5G52600.1 57.522 113 45 1 7 116 3 115 2.73e-42 145
Msa0653900 AT3G27920.1 54.955 111 50 0 8 118 9 119 3.24e-42 146
Msa0653900 AT2G47190.1 32.184 261 137 5 4 250 11 245 8.06e-42 147
Msa0653900 AT5G06100.5 60.000 105 42 0 12 116 31 135 8.82e-42 152
Msa0653900 AT5G06100.2 60.000 105 42 0 12 116 31 135 8.82e-42 152
Msa0653900 AT5G06100.3 60.000 105 42 0 12 116 31 135 8.82e-42 152
Msa0653900 AT5G06100.4 60.000 105 42 0 12 116 31 135 8.82e-42 152
Msa0653900 AT3G24310.1 60.952 105 41 0 12 116 17 121 9.88e-42 146
Msa0653900 AT3G30210.1 61.538 104 40 0 12 115 26 129 2.48e-41 145
Msa0653900 AT3G27810.1 60.000 105 42 0 13 117 20 124 6.49e-41 143
Msa0653900 AT4G13480.1 61.165 103 40 0 14 116 7 109 9.78e-41 144
Msa0653900 AT4G25560.1 60.377 106 42 0 14 119 11 116 1.13e-40 144
Msa0653900 AT5G26660.2 70.930 86 25 0 46 131 14 99 1.87e-40 144
Msa0653900 AT1G25340.1 55.263 114 51 0 14 127 19 132 3.55e-40 143
Msa0653900 AT3G01530.1 56.364 110 48 0 8 117 20 129 5.02e-40 140
Msa0653900 AT5G52260.1 64.151 106 38 0 14 119 13 118 9.31e-40 141
Msa0653900 AT3G48920.1 38.785 214 110 5 14 217 19 221 3.68e-39 139
Msa0653900 AT3G53200.1 58.716 109 45 0 8 116 4 112 7.42e-39 138
Msa0653900 AT1G66370.1 53.448 116 49 1 1 116 1 111 1.03e-38 138
Msa0653900 AT1G68320.1 56.757 111 48 0 13 123 19 129 1.42e-38 139
Msa0653900 AT3G06490.1 60.360 111 44 0 13 123 19 129 1.46e-37 137
Msa0653900 AT3G46130.1 53.333 105 49 0 12 116 8 112 1.13e-36 133
Msa0653900 AT5G59780.3 53.398 103 48 0 14 116 9 111 1.94e-36 132
Msa0653900 AT1G66380.1 57.944 107 45 0 10 116 5 111 6.50e-36 127
Msa0653900 AT5G49620.1 54.701 117 53 0 7 123 20 136 8.82e-36 132
Msa0653900 AT1G66390.1 59.048 105 43 0 12 116 7 111 1.46e-35 130
Msa0653900 AT1G56650.1 50.781 128 55 1 12 131 7 134 2.08e-35 129
Msa0653900 AT1G25340.2 52.632 114 49 1 14 127 19 127 2.75e-35 130
Msa0653900 AT1G25340.3 52.632 114 49 1 14 127 19 127 6.96e-35 129
Msa0653900 AT3G60460.1 50.442 113 54 2 9 120 7 118 1.55e-33 125
Msa0653900 AT3G12820.2 74.648 71 18 0 49 119 2 72 2.85e-33 122
Msa0653900 AT5G35550.2 75.000 72 18 0 46 117 50 121 8.82e-33 122
Msa0653900 AT3G47600.2 68.000 75 24 0 46 120 39 113 2.82e-32 123
Msa0653900 AT5G49620.2 48.855 131 53 1 7 123 20 150 3.38e-32 122
Msa0653900 AT5G14750.3 47.692 130 58 4 40 168 12 132 9.74e-32 117
Msa0653900 AT1G22640.3 57.576 99 32 1 60 158 2 90 8.37e-31 115
Msa0653900 AT5G40350.2 61.538 78 30 0 44 121 3 80 4.96e-30 112
Msa0653900 AT2G26950.1 48.571 105 53 1 18 122 21 124 1.16e-29 117
Msa0653900 AT3G53200.2 70.423 71 21 0 46 116 9 79 3.06e-29 112
Msa0653900 AT5G02320.1 46.296 108 57 1 10 117 122 228 1.81e-28 115
Msa0653900 AT5G02320.2 46.296 108 57 1 10 117 122 228 1.81e-28 115
Msa0653900 AT5G02320.3 46.296 108 57 1 10 117 62 168 2.71e-28 115
Msa0653900 AT3G09370.2 36.527 167 94 3 10 172 130 288 4.37e-28 114
Msa0653900 AT4G37260.1 50.980 102 49 1 15 116 13 113 4.99e-28 111
Msa0653900 AT3G09370.1 36.527 167 94 3 10 172 125 283 5.03e-28 114
Msa0653900 AT2G23290.1 50.000 102 50 1 15 116 13 113 6.02e-28 111
Msa0653900 AT3G09370.3 36.527 167 94 3 10 172 138 296 7.72e-28 114
Msa0653900 AT1G18960.1 45.763 118 55 4 15 129 10 121 7.89e-28 110
Msa0653900 AT5G59780.2 63.380 71 26 0 46 116 20 90 1.07e-27 108
Msa0653900 AT3G46130.3 62.500 72 27 0 45 116 9 80 1.14e-27 108
Msa0653900 AT3G27810.2 62.500 72 27 0 46 117 4 75 1.62e-27 106
Msa0653900 AT4G18770.1 41.781 146 72 4 9 148 211 349 2.51e-27 111
Msa0653900 AT3G46130.4 63.380 71 26 0 46 116 20 90 2.69e-27 107
Msa0653900 AT3G50060.1 47.059 102 53 1 15 116 6 106 3.62e-27 108
Msa0653900 AT3G09230.1 47.115 104 54 1 15 118 55 157 4.08e-27 110
Msa0653900 AT2G39880.1 50.000 102 50 1 15 116 50 150 5.74e-27 109
Msa0653900 AT3G55730.1 50.000 102 50 1 15 116 56 156 9.20e-27 109
Msa0653900 AT5G58850.1 47.115 104 54 1 13 116 103 205 1.08e-26 109
Msa0653900 AT5G67300.1 47.059 102 53 1 15 116 6 106 1.89e-26 107
Msa0653900 AT1G71030.1 50.562 89 43 1 39 127 7 94 2.14e-26 103
Msa0653900 AT1G71030.2 53.947 76 35 0 52 127 5 80 3.67e-26 103
Msa0653900 AT5G40360.1 43.519 108 60 1 8 115 151 257 1.16e-25 105
Msa0653900 AT5G11050.1 45.098 102 55 1 15 116 105 205 2.70e-25 105
Msa0653900 AT3G23250.2 72.414 58 16 0 60 117 2 59 5.23e-25 101
Msa0653900 AT1G66380.3 63.889 72 26 0 45 116 7 78 5.46e-25 97.8
Msa0653900 AT4G32730.5 43.519 108 60 1 10 117 82 188 9.77e-25 105
Msa0653900 AT4G32730.4 43.519 108 60 1 10 117 82 188 9.77e-25 105
Msa0653900 AT4G32730.3 43.519 108 60 1 10 117 82 188 9.77e-25 105
Msa0653900 AT4G32730.2 43.519 108 60 1 10 117 82 188 9.77e-25 105
Msa0653900 AT4G32730.1 43.519 108 60 1 10 117 82 188 1.17e-24 105
Msa0653900 AT3G27785.1 44.643 112 59 2 9 119 183 292 2.26e-24 103
Msa0653900 AT5G11510.3 42.857 112 55 2 10 117 76 182 2.58e-24 104
Msa0653900 AT5G11510.3 34.000 100 64 2 15 113 29 127 1.61e-11 65.9
Msa0653900 AT5G11510.1 42.857 112 55 2 10 117 76 182 2.58e-24 104
Msa0653900 AT5G11510.1 34.000 100 64 2 15 113 29 127 1.61e-11 65.9
Msa0653900 AT5G11510.4 42.857 112 55 2 10 117 76 182 2.58e-24 104
Msa0653900 AT5G11510.4 34.000 100 64 2 15 113 29 127 1.61e-11 65.9
Msa0653900 AT5G11510.5 42.857 112 55 2 10 117 76 182 2.87e-24 104
Msa0653900 AT5G11510.5 34.000 100 64 2 15 113 29 127 1.21e-11 66.2
Msa0653900 AT5G11510.2 42.857 112 55 2 10 117 76 182 3.17e-24 103
Msa0653900 AT5G11510.2 34.000 100 64 2 15 113 29 127 1.35e-11 66.2
Msa0653900 AT1G69560.1 40.000 130 72 3 13 141 105 229 2.44e-23 99.0
Msa0653900 AT1G69560.2 40.000 130 72 3 13 141 121 245 2.89e-23 99.0
Msa0653900 AT1G17950.1 46.078 102 54 1 15 116 5 105 1.36e-22 95.1
Msa0653900 AT1G26780.2 46.667 105 53 2 13 116 96 198 1.37e-22 97.4
Msa0653900 AT1G26780.1 49.000 100 48 2 13 111 96 193 1.41e-22 95.9
Msa0653900 AT5G14750.4 44.545 110 54 3 60 168 2 105 2.06e-22 92.0
Msa0653900 AT5G14750.2 44.545 110 54 3 60 168 2 105 2.06e-22 92.0
Msa0653900 AT4G33450.1 40.351 114 61 2 3 116 13 119 7.59e-22 93.2
Msa0653900 AT2G25230.1 40.650 123 68 3 9 128 20 140 1.02e-21 92.4
Msa0653900 AT5G17800.1 45.098 102 55 1 15 116 93 193 7.06e-21 92.0
Msa0653900 AT1G66380.2 52.381 84 40 0 12 95 7 90 1.19e-20 86.3
Msa0653900 AT1G73410.1 44.915 118 56 3 15 131 6 115 3.34e-20 88.6
Msa0653900 AT3G29020.1 41.748 103 59 1 15 117 65 166 3.55e-20 88.2
Msa0653900 AT3G29020.2 41.748 103 59 1 15 117 67 168 5.36e-20 89.4
Msa0653900 AT4G28110.2 83.333 42 7 0 89 130 4 45 6.16e-20 86.7
Msa0653900 AT1G73410.2 47.573 103 51 2 15 116 6 106 7.59e-20 86.7
Msa0653900 AT5G61420.1 72.917 48 13 0 82 129 2 49 2.90e-18 84.0
Msa0653900 AT2G37630.1 40.777 103 59 1 15 115 4 106 4.68e-18 84.3
Msa0653900 AT5G15310.3 73.810 42 11 0 89 130 9 50 2.57e-17 80.5
Msa0653900 AT4G00540.2 39.815 108 61 2 13 117 101 207 3.48e-17 82.4
Msa0653900 AT5G39700.1 38.393 112 67 2 8 119 49 158 6.39e-17 78.2
Msa0653900 AT4G00540.1 39.815 108 61 2 13 117 99 205 6.50e-17 81.6
Msa0653900 AT5G40430.1 36.449 107 66 2 9 115 48 152 1.28e-16 79.0
Msa0653900 AT1G14350.2 36.667 120 73 2 18 135 28 146 1.60e-16 80.5
Msa0653900 AT1G14350.1 36.667 120 73 2 18 135 28 146 1.60e-16 80.5
Msa0653900 AT4G25560.2 68.750 48 15 0 72 119 3 50 6.54e-16 76.3
Msa0653900 AT2G02820.1 37.374 99 61 1 18 116 33 130 4.37e-15 76.3
Msa0653900 AT2G02820.2 37.374 99 61 1 18 116 33 130 4.47e-15 76.3
Msa0653900 AT2G02820.3 37.374 99 61 1 18 116 33 130 7.44e-15 74.7
Msa0653900 AT1G22640.2 50.000 70 25 1 89 158 16 75 2.05e-14 71.2
Msa0653900 AT1G74650.3 66.667 42 14 0 79 120 2 43 3.32e-14 72.0
Msa0653900 AT5G59780.1 62.791 43 16 0 74 116 4 46 1.08e-13 68.6
Msa0653900 AT3G46130.2 62.791 43 16 0 74 116 4 46 2.63e-13 68.2
Msa0653900 AT3G28910.2 60.000 45 18 0 79 123 2 46 2.77e-13 69.3
Msa0653900 AT5G14340.2 37.895 95 58 1 89 183 10 103 1.41e-12 65.9
Msa0653900 AT1G74430.2 48.077 52 27 0 78 129 8 59 9.49e-12 63.9

Find 63 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCCACGCCTTGATCTTT+TGG 0.233178 4_3:+62143390 Msa0653900:CDS
TCATGCAAATGATTTAATTA+TGG 0.238692 4_3:+62143831 Msa0653900:CDS
ATTCATCTGCATAGCATTCT+TGG 0.241906 4_3:+62143056 Msa0653900:CDS
AATGCTATGCAGATGAATTA+TGG 0.276368 4_3:-62143051 None:intergenic
GGTGGTCTTCAATTGCTTCT+AGG 0.280586 4_3:+62143275 Msa0653900:intron
ATTTCATTGTCTGTTCTTCC+TGG 0.287218 4_3:-62143301 None:intergenic
ATGTATGTACCAGCATTCTT+TGG 0.291252 4_3:-62142818 None:intergenic
ATGAACATCCAAAGGCTAAT+TGG 0.305595 4_3:+62143463 Msa0653900:CDS
ACAATGAAATCAAGAATTAT+TGG 0.309694 4_3:+62143314 Msa0653900:CDS
AATTGTTGGAAGCCAGATTC+AGG 0.314520 4_3:-62143715 None:intergenic
TATTCGTCGAATTCGAATTC+TGG 0.322771 4_3:-62143900 None:intergenic
ATTATTGGAACACTCACATT+AGG 0.361810 4_3:+62143329 Msa0653900:CDS
TGGTCTTCCTCTTGCGTCCA+TGG 0.381180 4_3:-62142743 None:intergenic
AATGCAAATCATTTAATTGT+TGG 0.407951 4_3:-62143729 None:intergenic
CCTTGTTGTGAAAAGAATAA+TGG 0.424558 4_3:+62142707 Msa0653900:CDS
TGTATGTACCAGCATTCTTT+GGG 0.425956 4_3:-62142817 None:intergenic
TAGTATGTGCTATAGTTCTA+AGG 0.438499 4_3:-62142670 None:intergenic
TGACGAGTATAGATTCTCAT+TGG 0.444633 4_3:-62143686 None:intergenic
GAACACAGAGATTCTAAAGT+TGG 0.445522 4_3:+62143501 Msa0653900:CDS
TTTCCTATCTCATATAGCTT+AGG 0.452549 4_3:+62143982 Msa0653900:CDS
TAGGAAAAGACTGTTAAGAA+TGG 0.463534 4_3:+62143348 Msa0653900:CDS
ACACCTAAGCTATATGAGAT+AGG 0.463774 4_3:-62143985 None:intergenic
ATTGTGTACCAATTAGCCTT+TGG 0.464975 4_3:-62143471 None:intergenic
ATGAATTTATGATAGAAGAT+AGG 0.469498 4_3:-62143414 None:intergenic
TTAAATGATTTGCATTGCAA+TGG 0.472550 4_3:+62143736 Msa0653900:CDS
GCTAATATTAAACTAATAGA+TGG 0.474877 4_3:-62142618 None:intergenic
CCAAGTGTGAGCTAATTTGT+TGG 0.490696 4_3:-62143579 None:intergenic
GATATGATATGTCTGAAAAG+AGG 0.497422 4_3:-62142576 None:intergenic
AGGAAAAGACTGTTAAGAAT+GGG 0.497473 4_3:+62143349 Msa0653900:CDS
AAGAATAATGGCCTCAAAAG+AGG 0.510219 4_3:+62142719 Msa0653900:CDS
TCGAATTCGACGAATATCAA+TGG 0.514540 4_3:+62143907 Msa0653900:CDS
ATATGATATGTCTGAAAAGA+GGG 0.515522 4_3:-62142575 None:intergenic
TCAATTGCTTCTAGGTTACC+AGG 0.516154 4_3:+62143283 Msa0653900:CDS
AATCGTCCTCTCTTTATATC+CGG 0.517026 4_3:-62143008 None:intergenic
CCAACAAATTAGCTCACACT+TGG 0.521089 4_3:+62143579 Msa0653900:CDS
GTTCATTTGTGATGAGGTAG+AGG 0.528903 4_3:-62143446 None:intergenic
GAAAGAGTTGTCGTCTCCGT+TGG 0.532503 4_3:+62142970 Msa0653900:CDS
AAGATAGGTCCAAAAGATCA+AGG 0.542013 4_3:-62143399 None:intergenic
GTTGTTGTTATTGCAATGAA+AGG 0.546533 4_3:-62143878 None:intergenic
ACTGAGTGTGTTTGAGTGAA+AGG 0.550456 4_3:-62143658 None:intergenic
AGGCGTGGATTATGTGTCAC+AGG 0.568066 4_3:-62143379 None:intergenic
ACAACAAGGTGCTCTTCCCA+TGG 0.568553 4_3:-62142693 None:intergenic
TTGGATGTTCATTTGTGATG+AGG 0.578710 4_3:-62143452 None:intergenic
AGATTACTCCCAAAGAATGC+TGG 0.580656 4_3:+62142809 Msa0653900:CDS
GTTGCAGGATTACAAAGATG+TGG 0.585753 4_3:+62142948 Msa0653900:intron
AACTATAGCACATACTACCA+TGG 0.595506 4_3:+62142676 Msa0653900:exon
ACTATAGCACATACTACCAT+GGG 0.596997 4_3:+62142677 Msa0653900:exon
GAACTTGAGTAGTTATAGCA+TGG 0.608371 4_3:-62143802 None:intergenic
CATCACAAATGAACATCCAA+AGG 0.625838 4_3:+62143455 Msa0653900:CDS
GTCCTCTCTTTATATCCGGT+CGG 0.625860 4_3:-62143004 None:intergenic
GTTGAAGTTTCTGATATGTG+AGG 0.628864 4_3:-62143856 None:intergenic
AAGAGGACCATGGACGCAAG+AGG 0.629926 4_3:+62142736 Msa0653900:CDS
GTCGGAGATAGTTTGTCCAA+CGG 0.634169 4_3:-62142986 None:intergenic
TGCTTCAAGTAATGTAACAG+AGG 0.642911 4_3:+62143762 Msa0653900:CDS
TATAGTTCTAAGGTAAGTGA+AGG 0.644673 4_3:-62142660 None:intergenic
CTCCGACCGGATATAAAGAG+AGG 0.646689 4_3:+62143002 Msa0653900:CDS
TTGGACAAACTATCTCCGAC+CGG 0.649289 4_3:+62142989 Msa0653900:CDS
TGGTCAATGAGTTTGCGTGA+AGG 0.656324 4_3:-62142598 None:intergenic
ATGGCCTCAAAAGAGGACCA+TGG 0.672325 4_3:+62142726 Msa0653900:CDS
AGGTCCAAAAGATCAAGGCG+TGG 0.692260 4_3:-62143394 None:intergenic
GAATTATTATGACCACAAGG+TGG 0.694409 4_3:-62143631 None:intergenic
ATTGAATTATTATGACCACA+AGG 0.710509 4_3:-62143634 None:intergenic
ATGTTGTTGAATCCACCTTG+TGG 0.743965 4_3:+62143619 Msa0653900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAATGTTGATTATTT+TGG - chr4_3:62142897-62142916 None:intergenic 10.0%
!!! ATATATAATGTTGATTATTT+TGG - chr4_3:62142897-62142916 None:intergenic 10.0%
!! ATATATTGAAGTAAAATGTT+TGG + chr4_3:62142911-62142930 Msa0653900:intron 15.0%
!! ATATATTGAAGTAAAATGTT+TGG + chr4_3:62142911-62142930 Msa0653900:intron 15.0%
!! GCTAATATTAAACTAATAGA+TGG - chr4_3:62142621-62142640 None:intergenic 20.0%
!!! GAATATAAGCTATAAGTTTT+TGG - chr4_3:62142766-62142785 None:intergenic 20.0%
!! ATAGCTTATATTCAAAAACA+TGG + chr4_3:62142773-62142792 Msa0653900:CDS 20.0%
!! TATATTCAAAAACATGGTTA+TGG + chr4_3:62142779-62142798 Msa0653900:CDS 20.0%
!!! ATTTTTGTGACTAAACTATA+TGG + chr4_3:62143238-62143257 Msa0653900:intron 20.0%
!! ACAATGAAATCAAGAATTAT+TGG + chr4_3:62143314-62143333 Msa0653900:CDS 20.0%
!! ATGAATTTATGATAGAAGAT+AGG - chr4_3:62143417-62143436 None:intergenic 20.0%
!! AATGCAAATCATTTAATTGT+TGG - chr4_3:62143732-62143751 None:intergenic 20.0%
!! TCATGCAAATGATTTAATTA+TGG + chr4_3:62143831-62143850 Msa0653900:CDS 20.0%
!! GCTAATATTAAACTAATAGA+TGG - chr4_3:62142621-62142640 None:intergenic 20.0%
!!! GAATATAAGCTATAAGTTTT+TGG - chr4_3:62142766-62142785 None:intergenic 20.0%
!! ATAGCTTATATTCAAAAACA+TGG + chr4_3:62142773-62142792 Msa0653900:CDS 20.0%
!! TATATTCAAAAACATGGTTA+TGG + chr4_3:62142779-62142798 Msa0653900:CDS 20.0%
!!! ATTTTTGTGACTAAACTATA+TGG + chr4_3:62143238-62143257 Msa0653900:intron 20.0%
!! ACAATGAAATCAAGAATTAT+TGG + chr4_3:62143314-62143333 Msa0653900:CDS 20.0%
!! ATGAATTTATGATAGAAGAT+AGG - chr4_3:62143417-62143436 None:intergenic 20.0%
!! AATGCAAATCATTTAATTGT+TGG - chr4_3:62143732-62143751 None:intergenic 20.0%
!! TCATGCAAATGATTTAATTA+TGG + chr4_3:62143831-62143850 Msa0653900:CDS 20.0%
! ATATGATATGTCTGAAAAGA+GGG - chr4_3:62142578-62142597 None:intergenic 25.0%
!!! TATATGGTTTTGAATTGTGT+AGG + chr4_3:62143254-62143273 Msa0653900:intron 25.0%
! ATTGAATTATTATGACCACA+AGG - chr4_3:62143637-62143656 None:intergenic 25.0%
!! TTAAATGATTTGCATTGCAA+TGG + chr4_3:62143736-62143755 Msa0653900:CDS 25.0%
! ATATGATATGTCTGAAAAGA+GGG - chr4_3:62142578-62142597 None:intergenic 25.0%
!!! TATATGGTTTTGAATTGTGT+AGG + chr4_3:62143254-62143273 Msa0653900:intron 25.0%
! ATTGAATTATTATGACCACA+AGG - chr4_3:62143637-62143656 None:intergenic 25.0%
!! TTAAATGATTTGCATTGCAA+TGG + chr4_3:62143736-62143755 Msa0653900:CDS 25.0%
GATATGATATGTCTGAAAAG+AGG - chr4_3:62142579-62142598 None:intergenic 30.0%
!! TATAGTTCTAAGGTAAGTGA+AGG - chr4_3:62142663-62142682 None:intergenic 30.0%
! TAGTATGTGCTATAGTTCTA+AGG - chr4_3:62142673-62142692 None:intergenic 30.0%
! CCATTATTCTTTTCACAACA+AGG - chr4_3:62142710-62142729 None:intergenic 30.0%
! CCTTGTTGTGAAAAGAATAA+TGG + chr4_3:62142707-62142726 Msa0653900:CDS 30.0%
!!! GTTATTTTTGTTTGAGTTGC+AGG + chr4_3:62142933-62142952 Msa0653900:intron 30.0%
AATGCTATGCAGATGAATTA+TGG - chr4_3:62143054-62143073 None:intergenic 30.0%
ATTATTGGAACACTCACATT+AGG + chr4_3:62143329-62143348 Msa0653900:CDS 30.0%
TAGGAAAAGACTGTTAAGAA+TGG + chr4_3:62143348-62143367 Msa0653900:CDS 30.0%
AGGAAAAGACTGTTAAGAAT+GGG + chr4_3:62143349-62143368 Msa0653900:CDS 30.0%
! GTTGTTGTTATTGCAATGAA+AGG - chr4_3:62143881-62143900 None:intergenic 30.0%
TTTCCTATCTCATATAGCTT+AGG + chr4_3:62143982-62144001 Msa0653900:CDS 30.0%
GATATGATATGTCTGAAAAG+AGG - chr4_3:62142579-62142598 None:intergenic 30.0%
!! TATAGTTCTAAGGTAAGTGA+AGG - chr4_3:62142663-62142682 None:intergenic 30.0%
! TAGTATGTGCTATAGTTCTA+AGG - chr4_3:62142673-62142692 None:intergenic 30.0%
! CCATTATTCTTTTCACAACA+AGG - chr4_3:62142710-62142729 None:intergenic 30.0%
! CCTTGTTGTGAAAAGAATAA+TGG + chr4_3:62142707-62142726 Msa0653900:CDS 30.0%
!!! GTTATTTTTGTTTGAGTTGC+AGG + chr4_3:62142933-62142952 Msa0653900:intron 30.0%
AATGCTATGCAGATGAATTA+TGG - chr4_3:62143054-62143073 None:intergenic 30.0%
ATTATTGGAACACTCACATT+AGG + chr4_3:62143329-62143348 Msa0653900:CDS 30.0%
TAGGAAAAGACTGTTAAGAA+TGG + chr4_3:62143348-62143367 Msa0653900:CDS 30.0%
AGGAAAAGACTGTTAAGAAT+GGG + chr4_3:62143349-62143368 Msa0653900:CDS 30.0%
! GTTGTTGTTATTGCAATGAA+AGG - chr4_3:62143881-62143900 None:intergenic 30.0%
TTTCCTATCTCATATAGCTT+AGG + chr4_3:62143982-62144001 Msa0653900:CDS 30.0%
AACTATAGCACATACTACCA+TGG + chr4_3:62142676-62142695 Msa0653900:exon 35.0%
ACTATAGCACATACTACCAT+GGG + chr4_3:62142677-62142696 Msa0653900:exon 35.0%
AAGAATAATGGCCTCAAAAG+AGG + chr4_3:62142719-62142738 Msa0653900:CDS 35.0%
AAAAACATGGTTATGGCAAC+TGG + chr4_3:62142786-62142805 Msa0653900:CDS 35.0%
TGTATGTACCAGCATTCTTT+GGG - chr4_3:62142820-62142839 None:intergenic 35.0%
ATGTATGTACCAGCATTCTT+TGG - chr4_3:62142821-62142840 None:intergenic 35.0%
AATCGTCCTCTCTTTATATC+CGG - chr4_3:62143011-62143030 None:intergenic 35.0%
ATTCATCTGCATAGCATTCT+TGG + chr4_3:62143056-62143075 Msa0653900:CDS 35.0%
!!! ATGGTTTTGAATTGTGTAGG+TGG + chr4_3:62143257-62143276 Msa0653900:intron 35.0%
ATTTCATTGTCTGTTCTTCC+TGG - chr4_3:62143304-62143323 None:intergenic 35.0%
AAGATAGGTCCAAAAGATCA+AGG - chr4_3:62143402-62143421 None:intergenic 35.0%
TTGGATGTTCATTTGTGATG+AGG - chr4_3:62143455-62143474 None:intergenic 35.0%
CATCACAAATGAACATCCAA+AGG + chr4_3:62143455-62143474 Msa0653900:CDS 35.0%
ATGAACATCCAAAGGCTAAT+TGG + chr4_3:62143463-62143482 Msa0653900:CDS 35.0%
!! ATTGTGTACCAATTAGCCTT+TGG - chr4_3:62143474-62143493 None:intergenic 35.0%
!! GAACACAGAGATTCTAAAGT+TGG + chr4_3:62143501-62143520 Msa0653900:CDS 35.0%
GAATTATTATGACCACAAGG+TGG - chr4_3:62143634-62143653 None:intergenic 35.0%
TGACGAGTATAGATTCTCAT+TGG - chr4_3:62143689-62143708 None:intergenic 35.0%
!!! TCGTCATTTTTACCTGAATC+TGG + chr4_3:62143703-62143722 Msa0653900:CDS 35.0%
TGCTTCAAGTAATGTAACAG+AGG + chr4_3:62143762-62143781 Msa0653900:CDS 35.0%
GAACTTGAGTAGTTATAGCA+TGG - chr4_3:62143805-62143824 None:intergenic 35.0%
GTTGAAGTTTCTGATATGTG+AGG - chr4_3:62143859-62143878 None:intergenic 35.0%
TATTCGTCGAATTCGAATTC+TGG - chr4_3:62143903-62143922 None:intergenic 35.0%
TCGAATTCGACGAATATCAA+TGG + chr4_3:62143907-62143926 Msa0653900:CDS 35.0%
ACACCTAAGCTATATGAGAT+AGG - chr4_3:62143988-62144007 None:intergenic 35.0%
AACTATAGCACATACTACCA+TGG + chr4_3:62142676-62142695 Msa0653900:exon 35.0%
ACTATAGCACATACTACCAT+GGG + chr4_3:62142677-62142696 Msa0653900:exon 35.0%
AAGAATAATGGCCTCAAAAG+AGG + chr4_3:62142719-62142738 Msa0653900:CDS 35.0%
AAAAACATGGTTATGGCAAC+TGG + chr4_3:62142786-62142805 Msa0653900:CDS 35.0%
TGTATGTACCAGCATTCTTT+GGG - chr4_3:62142820-62142839 None:intergenic 35.0%
ATGTATGTACCAGCATTCTT+TGG - chr4_3:62142821-62142840 None:intergenic 35.0%
AATCGTCCTCTCTTTATATC+CGG - chr4_3:62143011-62143030 None:intergenic 35.0%
ATTCATCTGCATAGCATTCT+TGG + chr4_3:62143056-62143075 Msa0653900:CDS 35.0%
!!! ATGGTTTTGAATTGTGTAGG+TGG + chr4_3:62143257-62143276 Msa0653900:intron 35.0%
ATTTCATTGTCTGTTCTTCC+TGG - chr4_3:62143304-62143323 None:intergenic 35.0%
AAGATAGGTCCAAAAGATCA+AGG - chr4_3:62143402-62143421 None:intergenic 35.0%
TTGGATGTTCATTTGTGATG+AGG - chr4_3:62143455-62143474 None:intergenic 35.0%
CATCACAAATGAACATCCAA+AGG + chr4_3:62143455-62143474 Msa0653900:CDS 35.0%
ATGAACATCCAAAGGCTAAT+TGG + chr4_3:62143463-62143482 Msa0653900:CDS 35.0%
!! ATTGTGTACCAATTAGCCTT+TGG - chr4_3:62143474-62143493 None:intergenic 35.0%
!! GAACACAGAGATTCTAAAGT+TGG + chr4_3:62143501-62143520 Msa0653900:CDS 35.0%
GAATTATTATGACCACAAGG+TGG - chr4_3:62143634-62143653 None:intergenic 35.0%
TGACGAGTATAGATTCTCAT+TGG - chr4_3:62143689-62143708 None:intergenic 35.0%
!!! TCGTCATTTTTACCTGAATC+TGG + chr4_3:62143703-62143722 Msa0653900:CDS 35.0%
TGCTTCAAGTAATGTAACAG+AGG + chr4_3:62143762-62143781 Msa0653900:CDS 35.0%
GAACTTGAGTAGTTATAGCA+TGG - chr4_3:62143805-62143824 None:intergenic 35.0%
GTTGAAGTTTCTGATATGTG+AGG - chr4_3:62143859-62143878 None:intergenic 35.0%
TATTCGTCGAATTCGAATTC+TGG - chr4_3:62143903-62143922 None:intergenic 35.0%
TCGAATTCGACGAATATCAA+TGG + chr4_3:62143907-62143926 Msa0653900:CDS 35.0%
ACACCTAAGCTATATGAGAT+AGG - chr4_3:62143988-62144007 None:intergenic 35.0%
AGATTACTCCCAAAGAATGC+TGG + chr4_3:62142809-62142828 Msa0653900:CDS 40.0%
GTTGCAGGATTACAAAGATG+TGG + chr4_3:62142948-62142967 Msa0653900:intron 40.0%
TCAATTGCTTCTAGGTTACC+AGG + chr4_3:62143283-62143302 Msa0653900:CDS 40.0%
! TAATCCACGCCTTGATCTTT+TGG + chr4_3:62143390-62143409 Msa0653900:CDS 40.0%
GTTCATTTGTGATGAGGTAG+AGG - chr4_3:62143449-62143468 None:intergenic 40.0%
! CCAAGTGTGAGCTAATTTGT+TGG - chr4_3:62143582-62143601 None:intergenic 40.0%
CCAACAAATTAGCTCACACT+TGG + chr4_3:62143579-62143598 Msa0653900:CDS 40.0%
ATGTTGTTGAATCCACCTTG+TGG + chr4_3:62143619-62143638 Msa0653900:CDS 40.0%
ACTGAGTGTGTTTGAGTGAA+AGG - chr4_3:62143661-62143680 None:intergenic 40.0%
AATTGTTGGAAGCCAGATTC+AGG - chr4_3:62143718-62143737 None:intergenic 40.0%
AGATTACTCCCAAAGAATGC+TGG + chr4_3:62142809-62142828 Msa0653900:CDS 40.0%
GTTGCAGGATTACAAAGATG+TGG + chr4_3:62142948-62142967 Msa0653900:intron 40.0%
TCAATTGCTTCTAGGTTACC+AGG + chr4_3:62143283-62143302 Msa0653900:CDS 40.0%
! TAATCCACGCCTTGATCTTT+TGG + chr4_3:62143390-62143409 Msa0653900:CDS 40.0%
GTTCATTTGTGATGAGGTAG+AGG - chr4_3:62143449-62143468 None:intergenic 40.0%
! CCAAGTGTGAGCTAATTTGT+TGG - chr4_3:62143582-62143601 None:intergenic 40.0%
CCAACAAATTAGCTCACACT+TGG + chr4_3:62143579-62143598 Msa0653900:CDS 40.0%
ATGTTGTTGAATCCACCTTG+TGG + chr4_3:62143619-62143638 Msa0653900:CDS 40.0%
ACTGAGTGTGTTTGAGTGAA+AGG - chr4_3:62143661-62143680 None:intergenic 40.0%
AATTGTTGGAAGCCAGATTC+AGG - chr4_3:62143718-62143737 None:intergenic 40.0%
TGGTCAATGAGTTTGCGTGA+AGG - chr4_3:62142601-62142620 None:intergenic 45.0%
! GTCGGAGATAGTTTGTCCAA+CGG - chr4_3:62142989-62143008 None:intergenic 45.0%
TTGGACAAACTATCTCCGAC+CGG + chr4_3:62142989-62143008 Msa0653900:CDS 45.0%
GTCCTCTCTTTATATCCGGT+CGG - chr4_3:62143007-62143026 None:intergenic 45.0%
GGTGGTCTTCAATTGCTTCT+AGG + chr4_3:62143275-62143294 Msa0653900:intron 45.0%
TGGTCAATGAGTTTGCGTGA+AGG - chr4_3:62142601-62142620 None:intergenic 45.0%
! GTCGGAGATAGTTTGTCCAA+CGG - chr4_3:62142989-62143008 None:intergenic 45.0%
TTGGACAAACTATCTCCGAC+CGG + chr4_3:62142989-62143008 Msa0653900:CDS 45.0%
GTCCTCTCTTTATATCCGGT+CGG - chr4_3:62143007-62143026 None:intergenic 45.0%
GGTGGTCTTCAATTGCTTCT+AGG + chr4_3:62143275-62143294 Msa0653900:intron 45.0%
! ACAACAAGGTGCTCTTCCCA+TGG - chr4_3:62142696-62142715 None:intergenic 50.0%
ATGGCCTCAAAAGAGGACCA+TGG + chr4_3:62142726-62142745 Msa0653900:CDS 50.0%
GAAAGAGTTGTCGTCTCCGT+TGG + chr4_3:62142970-62142989 Msa0653900:CDS 50.0%
CTCCGACCGGATATAAAGAG+AGG + chr4_3:62143002-62143021 Msa0653900:CDS 50.0%
! AGGCGTGGATTATGTGTCAC+AGG - chr4_3:62143382-62143401 None:intergenic 50.0%
AGGTCCAAAAGATCAAGGCG+TGG - chr4_3:62143397-62143416 None:intergenic 50.0%
! ACAACAAGGTGCTCTTCCCA+TGG - chr4_3:62142696-62142715 None:intergenic 50.0%
ATGGCCTCAAAAGAGGACCA+TGG + chr4_3:62142726-62142745 Msa0653900:CDS 50.0%
GAAAGAGTTGTCGTCTCCGT+TGG + chr4_3:62142970-62142989 Msa0653900:CDS 50.0%
CTCCGACCGGATATAAAGAG+AGG + chr4_3:62143002-62143021 Msa0653900:CDS 50.0%
! AGGCGTGGATTATGTGTCAC+AGG - chr4_3:62143382-62143401 None:intergenic 50.0%
AGGTCCAAAAGATCAAGGCG+TGG - chr4_3:62143397-62143416 None:intergenic 50.0%
! GCGTCCATGGTCCTCTTTTG+AGG - chr4_3:62142733-62142752 None:intergenic 55.0%
AAGAGGACCATGGACGCAAG+AGG + chr4_3:62142736-62142755 Msa0653900:CDS 55.0%
TGGTCTTCCTCTTGCGTCCA+TGG - chr4_3:62142746-62142765 None:intergenic 55.0%
! GCGTCCATGGTCCTCTTTTG+AGG - chr4_3:62142733-62142752 None:intergenic 55.0%
AAGAGGACCATGGACGCAAG+AGG + chr4_3:62142736-62142755 Msa0653900:CDS 55.0%
TGGTCTTCCTCTTGCGTCCA+TGG - chr4_3:62142746-62142765 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 62142566 62144023 62142566 ID=Msa0653900;Name=Msa0653900
chr4_3 mRNA 62142566 62144023 62142566 ID=Msa0653900-mRNA-1;Parent=Msa0653900;Name=Msa0653900-mRNA-1;_AED=0.10;_eAED=0.10;_QI=129|1|0.66|1|1|1|3|0|337
chr4_3 exon 62142566 62142830 62142566 ID=Msa0653900-mRNA-1:exon:17157;Parent=Msa0653900-mRNA-1
chr4_3 exon 62142955 62143084 62142955 ID=Msa0653900-mRNA-1:exon:17158;Parent=Msa0653900-mRNA-1
chr4_3 exon 62143276 62144023 62143276 ID=Msa0653900-mRNA-1:exon:17159;Parent=Msa0653900-mRNA-1
chr4_3 five_prime_UTR 62142566 62142694 62142566 ID=Msa0653900-mRNA-1:five_prime_utr;Parent=Msa0653900-mRNA-1
chr4_3 CDS 62142695 62142830 62142695 ID=Msa0653900-mRNA-1:cds;Parent=Msa0653900-mRNA-1
chr4_3 CDS 62142955 62143084 62142955 ID=Msa0653900-mRNA-1:cds;Parent=Msa0653900-mRNA-1
chr4_3 CDS 62143276 62144023 62143276 ID=Msa0653900-mRNA-1:cds;Parent=Msa0653900-mRNA-1
Gene Sequence

>Msa0653900

ATGGGAAGAGCACCTTGTTGTGAAAAGAATAATGGCCTCAAAAGAGGACCATGGACGCAAGAGGAAGACCAAAAACTTATAGCTTATATTCAAAAACATGGTTATGGCAACTGGAGATTACTCCCAAAGAATGCTGGATTACAAAGATGTGGAAAGAGTTGTCGTCTCCGTTGGACAAACTATCTCCGACCGGATATAAAGAGAGGACGATTCTCTTTTGAAGAAGAAGAAACCATAATTCATCTGCATAGCATTCTTGGCAACAAGTGGTCTTCAATTGCTTCTAGGTTACCAGGAAGAACAGACAATGAAATCAAGAATTATTGGAACACTCACATTAGGAAAAGACTGTTAAGAATGGGAATTGATCCTGTGACACATAATCCACGCCTTGATCTTTTGGACCTATCTTCTATCATAAATTCATCTCTCTATGCCTCTACCTCATCACAAATGAACATCCAAAGGCTAATTGGTACACAATCAATAGTGAACACAGAGATTCTAAAGTTGGCTTCATCACTCTTCTCTTCTCAAAATGTACAAGAGAATTATCAAATTGATCAAAACCAACAAATTAGCTCACACTTGGATCAAGAAGCTTGCAACATGTTGTTGAATCCACCTTGTGGTCATAATAATTCAATGCCTTTCACTCAAACACACTCAGTTGAATCCAATGAGAATCTATACTCGTCATTTTTACCTGAATCTGGCTTCCAACAATTAAATGATTTGCATTGCAATGGAATTGCTTCAAGTAATGTAACAGAGGATTTTGTTCATCAATTACCATGCTATAACTACTCAAGTTCTGATTATCATGCAAATGATTTAATTATGGAGCCTCACATATCAGAAACTTCAACCTTTCATTGCAATAACAACAACCAGAATTCGAATTCGACGAATATCAATGGAAGCAGTAATGAAGATGAGACAGAGAGCTATGTTAGCAGCAACATATTTGAATTTCCTATCTCATATAGCTTAGGTGTGAATGAGTTCATGTAA

Protein sequence

>Msa0653900

MGRAPCCEKNNGLKRGPWTQEEDQKLIAYIQKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIHLHSILGNKWSSIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSSIINSSLYASTSSQMNIQRLIGTQSIVNTEILKLASSLFSSQNVQENYQIDQNQQISSHLDQEACNMLLNPPCGHNNSMPFTQTHSVESNENLYSSFLPESGFQQLNDLHCNGIASSNVTEDFVHQLPCYNYSSSDYHANDLIMEPHISETSTFHCNNNNQNSNSTNINGSSNEDETESYVSSNIFEFPISYSLGVNEFM*