AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0654450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654450 MtrunA17_Chr4g0049431 95.455 110 5 0 42 151 54 163 1.71e-73 221
Msa0654450 MtrunA17_Chr3g0141101 68.182 110 34 1 42 151 105 213 1.34e-46 154
Msa0654450 MtrunA17_Chr5g0428091 61.818 110 41 1 42 151 92 200 1.59e-43 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654450 AT5G64460.11 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0654450 AT5G64460.7 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0654450 AT5G64460.9 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0654450 AT5G64460.4 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.6 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.10 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.2 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.1 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.8 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.3 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0654450 AT5G64460.5 82.927 82 13 1 70 151 1 81 6.99e-45 146
Msa0654450 AT2G17280.1 64.545 110 38 1 42 151 53 161 1.04e-44 148
Msa0654450 AT2G17280.2 64.545 110 38 1 42 151 53 161 1.04e-44 148
Msa0654450 AT1G58280.3 63.636 110 39 1 42 151 81 189 9.11e-43 144
Msa0654450 AT1G58280.1 63.636 110 39 1 42 151 96 204 1.21e-42 144
Msa0654450 AT1G58280.4 63.636 110 39 1 42 151 80 188 2.39e-42 143
Msa0654450 AT1G58280.2 51.852 135 39 2 42 151 96 229 6.16e-37 130
Msa0654450 AT1G09932.3 38.053 113 55 1 42 154 55 152 2.49e-24 94.7
Msa0654450 AT1G09932.2 38.053 113 55 1 42 154 48 145 3.97e-24 94.7
Msa0654450 AT1G09932.1 39.823 113 53 2 42 154 55 152 4.62e-24 94.7
Msa0654450 AT1G09935.1 46.296 108 37 1 43 150 52 138 7.21e-24 93.6
Msa0654450 AT1G09935.2 46.296 108 37 1 43 150 52 138 8.58e-24 93.2
Msa0654450 AT1G09932.4 40.000 85 36 2 42 126 55 124 5.37e-13 64.7

Find 92 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTTACATTCTTTAATT+TGG 0.067571 4_3:+62622906 Msa0654450:three_prime_UTR
CAAACAGCTGTTGGGGTATT+TGG 0.191261 4_3:+62620442 Msa0654450:CDS
GTATCTGCTAGAAATATTTA+TGG 0.196615 4_3:+62623431 Msa0654450:three_prime_UTR
AAGTAAATGATTGACTTATT+TGG 0.201148 4_3:+62623009 Msa0654450:three_prime_UTR
TCATTTCTTTCGCTGTATTA+AGG 0.223875 4_3:+62621489 Msa0654450:three_prime_UTR
TCAGCAGTTCAATGTTTAAA+TGG 0.252832 4_3:-62623313 None:intergenic
TGCTTTACATTCTTTAATTT+GGG 0.265831 4_3:+62622907 Msa0654450:three_prime_UTR
AGCAATATGGATTGCGTTGC+CGG 0.270338 4_3:+62617901 Msa0654450:CDS
TTTCACACTCTAACTACATT+TGG 0.307340 4_3:+62622732 Msa0654450:three_prime_UTR
CGAACTTTGCCGTGAACATT+TGG 0.328841 4_3:+62620579 Msa0654450:CDS
TTTCCCATCAGCAAAGAAAA+AGG 0.343182 4_3:-62623537 None:intergenic
AACGGATGTGCTGCCTCTTA+TGG 0.353393 4_3:+62620489 Msa0654450:CDS
CGTAAACATGTTCGTTCCTC+TGG 0.353503 4_3:+62618087 Msa0654450:CDS
GGATGAAAATGTCGAGAAAC+AGG 0.364230 4_3:+62623257 Msa0654450:three_prime_UTR
CCTGCATTTGCCACCATAAG+AGG 0.370940 4_3:-62620502 None:intergenic
ATCATAAACCACAAGCATTC+AGG 0.374223 4_3:-62621440 None:intergenic
TGTTTAACACCAACAGTTGC+AGG 0.387496 4_3:-62622938 None:intergenic
AAAAGGATGTTTGACGGCAC+TGG 0.405588 4_3:-62623520 None:intergenic
GGACTTTGCAAACAGCTGTT+GGG 0.407826 4_3:+62620434 Msa0654450:intron
TGACGACGAATCTGACTTAG+AGG 0.415759 4_3:+62622961 Msa0654450:three_prime_UTR
AGCATCAACAACTAACTATC+CGG 0.418415 4_3:+62623194 Msa0654450:three_prime_UTR
AAAGGAGGAACTGGCAGCTA+GGG 0.425635 4_3:+62621620 Msa0654450:three_prime_UTR
TATCCGGGCAAGATACCTTC+AGG 0.427271 4_3:+62623210 Msa0654450:three_prime_UTR
AATTGCCCACCAATTGTTGC+TGG 0.429050 4_3:+62620556 Msa0654450:CDS
CAAAGTTCGCCAGCAACAAT+TGG 0.431400 4_3:-62620565 None:intergenic
TGTTGGGGTATTTGGTGGGG+AGG 0.433278 4_3:+62620450 Msa0654450:CDS
CAAAGGAGGAACTGGCAGCT+AGG 0.439691 4_3:+62621619 Msa0654450:three_prime_UTR
AGGACTTTGCAAACAGCTGT+TGG 0.439773 4_3:+62620433 Msa0654450:intron
GATATTTCTTTCTTCACCAA+GGG 0.440479 4_3:-62622768 None:intergenic
GGAGGAACTGGCAGCTAGGG+GGG 0.440908 4_3:+62621623 Msa0654450:three_prime_UTR
TTATCAGATTCGGAGCAATA+TGG 0.446312 4_3:+62617888 Msa0654450:intron
CCTCTTATGGTGGCAAATGC+AGG 0.448697 4_3:+62620502 Msa0654450:CDS
AGAGACTAATATAAACATAA+AGG 0.455758 4_3:-62621533 None:intergenic
AAGAGAGACAAAGGAGGAAC+TGG 0.456446 4_3:+62621611 Msa0654450:three_prime_UTR
CAGCTGTTGGGGTATTTGGT+GGG 0.460056 4_3:+62620446 Msa0654450:CDS
CATGGAGCGAAGCTCACAAT+TGG 0.460292 4_3:-62623050 None:intergenic
AAGTAAAATATAACTATGTA+AGG 0.469668 4_3:+62623471 Msa0654450:three_prime_UTR
GTTGGGGTATTTGGTGGGGA+GGG 0.478766 4_3:+62620451 Msa0654450:CDS
TATGTAAGGCAAGGCAAGGC+AGG 0.480838 4_3:+62623485 Msa0654450:three_prime_UTR
CAATTGTGAGCTTCGCTCCA+TGG 0.485079 4_3:+62623051 Msa0654450:three_prime_UTR
ACAGCTGTTGGGGTATTTGG+TGG 0.489900 4_3:+62620445 Msa0654450:CDS
GGATATTTCTTTCTTCACCA+AGG 0.490934 4_3:-62622769 None:intergenic
GGATAATGTAAGAGAGACAA+AGG 0.493248 4_3:+62621602 Msa0654450:three_prime_UTR
TAGACAGTGATGAGGATGTT+TGG 0.508871 4_3:+62621574 Msa0654450:three_prime_UTR
CTAGGCTTGTCCAGCCCTGA+AGG 0.512267 4_3:-62623225 None:intergenic
GGGCAAGATACCTTCAGGGC+TGG 0.518060 4_3:+62623215 Msa0654450:three_prime_UTR
TCCAATTAATACCTCATCAA+AGG 0.521069 4_3:-62618144 None:intergenic
CACAATTGGCAAAGCTGCAA+AGG 0.521452 4_3:-62623036 None:intergenic
AAAGGATGTTTGACGGCACT+GGG 0.530771 4_3:-62623519 None:intergenic
GGGATACACTGATGATAAAA+CGG 0.532332 4_3:+62620471 Msa0654450:CDS
TAAAGGCAACAGTTAAATGT+TGG 0.535194 4_3:-62621516 None:intergenic
AGCCCTGAAGGTATCTTGCC+CGG 0.535829 4_3:-62623213 None:intergenic
ATTTGCGTACCAAATGTTCA+CGG 0.540428 4_3:-62620588 None:intergenic
AGTTCGCCAGCAACAATTGG+TGG 0.541305 4_3:-62620562 None:intergenic
TGGAAATGATTGCCACCCCT+TGG 0.547988 4_3:+62622752 Msa0654450:three_prime_UTR
ATCCGGGCAAGATACCTTCA+GGG 0.554632 4_3:+62623211 Msa0654450:three_prime_UTR
TTCAAGTGCCTGAATGCTTG+TGG 0.559192 4_3:+62621432 Msa0654450:exon
TCCCTTGAGCGTGTCTCACA+AGG 0.562690 4_3:-62617963 None:intergenic
GATCAAGTTCCTGCAACTGT+TGG 0.564864 4_3:+62622929 Msa0654450:three_prime_UTR
AGCTGTTGGGGTATTTGGTG+GGG 0.570094 4_3:+62620447 Msa0654450:CDS
GCTTCGCTCCATGGTCCTTG+TGG 0.578334 4_3:+62623060 Msa0654450:three_prime_UTR
TAACGGAAACAAACACGTGC+CGG 0.579296 4_3:-62617920 None:intergenic
CAAGGGATCCACAATGTGGA+AGG 0.581062 4_3:+62617979 Msa0654450:CDS
CTTTCTATCCACAAGGACCA+TGG 0.586011 4_3:-62623068 None:intergenic
ACAGTGATGAGGATGTTTGG+TGG 0.587514 4_3:+62621577 Msa0654450:three_prime_UTR
GCATCAACAACTAACTATCC+GGG 0.587893 4_3:+62623195 Msa0654450:three_prime_UTR
GACTTTGCAAACAGCTGTTG+GGG 0.588956 4_3:+62620435 Msa0654450:CDS
AAATATAACTATGTAAGGCA+AGG 0.591426 4_3:+62623476 Msa0654450:three_prime_UTR
GGACAAGCCTAGTGATGCTG+TGG 0.593967 4_3:+62623236 Msa0654450:three_prime_UTR
TCATCGCTTCTCCTTTGATG+AGG 0.598983 4_3:+62618133 Msa0654450:CDS
TAACTATGTAAGGCAAGGCA+AGG 0.600112 4_3:+62623481 Msa0654450:three_prime_UTR
CACCTTGTGAGACACGCTCA+AGG 0.601658 4_3:+62617961 Msa0654450:CDS
AGGAGGAACTGGCAGCTAGG+GGG 0.601826 4_3:+62621622 Msa0654450:three_prime_UTR
GATGAAAATGTCGAGAAACA+GGG 0.608952 4_3:+62623258 Msa0654450:three_prime_UTR
GATACTAAATGTTAGCTGCA+AGG 0.613373 4_3:-62623413 None:intergenic
TTTCTTTCTTCACCAAGGGG+TGG 0.614051 4_3:-62622764 None:intergenic
AAGGAGGAACTGGCAGCTAG+GGG 0.614949 4_3:+62621621 Msa0654450:three_prime_UTR
TGATGAGGATGTTTGGTGGA+AGG 0.616744 4_3:+62621581 Msa0654450:three_prime_UTR
GATCTTGTTAATTAATCCAG+AGG 0.617260 4_3:-62618103 None:intergenic
AATGCAGGAAATAGCTTCCG+TGG 0.617766 4_3:+62620517 Msa0654450:CDS
ACCTTGTGAGACACGCTCAA+GGG 0.620665 4_3:+62617962 Msa0654450:CDS
ATATTTCTTTCTTCACCAAG+GGG 0.623337 4_3:-62622767 None:intergenic
GTTCGCCAGCAACAATTGGT+GGG 0.629718 4_3:-62620561 None:intergenic
ATACTCACTTTCTATCCACA+AGG 0.636262 4_3:-62623075 None:intergenic
CGCTCAAGGGATCCACAATG+TGG 0.645094 4_3:+62617975 Msa0654450:CDS
ATGAAAATGTCGAGAAACAG+GGG 0.660211 4_3:+62623259 Msa0654450:three_prime_UTR
GGATGTGCTGCCTCTTATGG+TGG 0.662408 4_3:+62620492 Msa0654450:CDS
GTTTCAGATAGACAGTGATG+AGG 0.665843 4_3:+62621566 Msa0654450:three_prime_UTR
TAATGTAAGAGAGACAAAGG+AGG 0.671000 4_3:+62621605 Msa0654450:three_prime_UTR
GACGACGAATCTGACTTAGA+GGG 0.673741 4_3:+62622962 Msa0654450:three_prime_UTR
ATAGCGATTGTGACACACAG+TGG 0.725382 4_3:+62622702 Msa0654450:three_prime_UTR
TATGACTTGAAATTGCACCA+CGG 0.752320 4_3:-62620534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTCCATATTTAAA+TGG - chr4_3:62620177-62620196 None:intergenic 10.0%
!!! TAATTGTTTCATATATATTT+TGG + chr4_3:62620406-62620425 Msa0654450:intron 10.0%
!! TGTATATAAATTAGTAATAA+AGG + chr4_3:62621149-62621168 Msa0654450:intron 10.0%
!! AAATTATTAATGATATATGT+TGG - chr4_3:62621782-62621801 None:intergenic 10.0%
!! TTGATTGAAAAAAAAAAGAA+AGG + chr4_3:62619162-62619181 Msa0654450:intron 15.0%
!!! TATTTTTCATATTAAAATGG+TGG - chr4_3:62619369-62619388 None:intergenic 15.0%
!! ACATTAAATGAAAAATATGA+TGG - chr4_3:62619773-62619792 None:intergenic 15.0%
!!! GTTTGAATTTTATGAAAATA+TGG + chr4_3:62619793-62619812 Msa0654450:intron 15.0%
!! AAATTAGTAATAAAGGAAAA+AGG + chr4_3:62621156-62621175 Msa0654450:intron 15.0%
!!! TTGAAATTTTCATTTTCAAA+CGG + chr4_3:62621811-62621830 Msa0654450:intron 15.0%
!! AATAAAGTAATGTAAAATAG+GGG - chr4_3:62622018-62622037 None:intergenic 15.0%
!! GAATAAAGTAATGTAAAATA+GGG - chr4_3:62622019-62622038 None:intergenic 15.0%
!!! TTAGAGTTTATATTTTGAAA+GGG - chr4_3:62623120-62623139 None:intergenic 15.0%
!!! ATTAGAGTTTATATTTTGAA+AGG - chr4_3:62623121-62623140 None:intergenic 15.0%
!!! TTACATAGTTATATTTTACT+TGG - chr4_3:62623472-62623491 None:intergenic 15.0%
!! AAGTAAAATATAACTATGTA+AGG + chr4_3:62623471-62623490 Msa0654450:three_prime_UTR 15.0%
!!! AGCCTATTTTTCATTTAATT+GGG + chr4_3:62618326-62618345 Msa0654450:intron 20.0%
!! TATTCCTTTCATTAGTATAT+TGG + chr4_3:62618464-62618483 Msa0654450:intron 20.0%
!! TATTCCAATATACTAATGAA+AGG - chr4_3:62618471-62618490 None:intergenic 20.0%
!!! CTTTTTTTTTTCAATCAACA+TGG - chr4_3:62619160-62619179 None:intergenic 20.0%
!! ATAAAAAACACAACAAGTAT+AGG - chr4_3:62619492-62619511 None:intergenic 20.0%
!!! TTTAATTTGAAAGTTGACTT+TGG + chr4_3:62619649-62619668 Msa0654450:intron 20.0%
!! TTGAATGAAAAAGAAAGAAA+AGG + chr4_3:62619967-62619986 Msa0654450:intron 20.0%
!!! ATTTTCCATATTTAAATGGT+GGG - chr4_3:62620173-62620192 None:intergenic 20.0%
!!! TATTTTCCATATTTAAATGG+TGG - chr4_3:62620174-62620193 None:intergenic 20.0%
!! AAAACTAGATTGAAAAAACA+AGG - chr4_3:62620214-62620233 None:intergenic 20.0%
!! AGGAAATAAAAAATACAACA+GGG - chr4_3:62620296-62620315 None:intergenic 20.0%
!!! TTTTGCTATCAAATTCTTTT+GGG - chr4_3:62620880-62620899 None:intergenic 20.0%
!!! ATTTTGCTATCAAATTCTTT+TGG - chr4_3:62620881-62620900 None:intergenic 20.0%
!!! TTGATATTAACATTGACTTA+TGG + chr4_3:62621279-62621298 Msa0654450:intron 20.0%
!! AGAGACTAATATAAACATAA+AGG - chr4_3:62621536-62621555 None:intergenic 20.0%
!! GAACCAAAAAAAAATGTTAA+AGG + chr4_3:62621715-62621734 Msa0654450:intron 20.0%
!! GGAATAAAGTAATGTAAAAT+AGG - chr4_3:62622020-62622039 None:intergenic 20.0%
!! GATTATTAGAACTGATATAT+TGG + chr4_3:62622535-62622554 Msa0654450:intron 20.0%
!!! TGCTTTACATTCTTTAATTT+GGG + chr4_3:62622907-62622926 Msa0654450:three_prime_UTR 20.0%
!!! AAGTAAATGATTGACTTATT+TGG + chr4_3:62623009-62623028 Msa0654450:three_prime_UTR 20.0%
!!! CAGCCTATTTTTCATTTAAT+TGG + chr4_3:62618325-62618344 Msa0654450:intron 25.0%
!!! TTTTTTTTTAACTCGGTATC+CGG - chr4_3:62618404-62618423 None:intergenic 25.0%
! CAATTTAGTAACAGAAATTG+TGG - chr4_3:62618640-62618659 None:intergenic 25.0%
! ACAAACTAACATACTAACAT+TGG - chr4_3:62618740-62618759 None:intergenic 25.0%
! TAAGTACATGTTAACATTGT+GGG - chr4_3:62618856-62618875 None:intergenic 25.0%
! TTAAGTACATGTTAACATTG+TGG - chr4_3:62618857-62618876 None:intergenic 25.0%
!!! GTAAACAACATTGTTACTTT+GGG - chr4_3:62619011-62619030 None:intergenic 25.0%
!! AGTAAACAACATTGTTACTT+TGG - chr4_3:62619012-62619031 None:intergenic 25.0%
! TAACGTGTATTATACAAGAT+TGG - chr4_3:62619056-62619075 None:intergenic 25.0%
! GGAAAATGAAAGATGTTAAT+AGG - chr4_3:62619348-62619367 None:intergenic 25.0%
! CATCTAAATTCCAATTAGTT+TGG - chr4_3:62619734-62619753 None:intergenic 25.0%
! TCAAAAGTTAGTCATTTCAA+TGG + chr4_3:62619824-62619843 Msa0654450:intron 25.0%
! TTTAGCATTTCAAATTAACC+AGG + chr4_3:62619139-62619158 Msa0654450:intron 25.0%
!! TGATGCTTAATCATTACTTT+TGG - chr4_3:62620060-62620079 None:intergenic 25.0%
!! TAGGAAAAATATAGAAGTGT+AGG - chr4_3:62620134-62620153 None:intergenic 25.0%
!!! ATCTAGTTTTAACAAGAGAA+AGG + chr4_3:62620224-62620243 Msa0654450:intron 25.0%
! GAGGAAATAAAAAATACAAC+AGG - chr4_3:62620297-62620316 None:intergenic 25.0%
!!! GTTGTATTTTTTATTTCCTC+AGG + chr4_3:62620297-62620316 Msa0654450:intron 25.0%
! TATTTCCTCAGGATTAAATT+TGG + chr4_3:62620308-62620327 Msa0654450:intron 25.0%
! ATTTCCTCAGGATTAAATTT+GGG + chr4_3:62620309-62620328 Msa0654450:intron 25.0%
!!! TTCATATATATTTTGGCTTC+AGG + chr4_3:62620413-62620432 Msa0654450:intron 25.0%
!!! GAACATATTTTTACCTGTTT+CGG + chr4_3:62620620-62620639 Msa0654450:intron 25.0%
! TATCTTGACAGTTAAAAGAT+TGG - chr4_3:62620733-62620752 None:intergenic 25.0%
!!! CGGTACTTTTAAGTTTTAAA+TGG - chr4_3:62620983-62621002 None:intergenic 25.0%
! ATCTACTATGAATAATCAGT+AGG + chr4_3:62621016-62621035 Msa0654450:intron 25.0%
!! TGACAATAAATTTAAAGCTC+AGG + chr4_3:62621126-62621145 Msa0654450:intron 25.0%
!! ACTTCTGTTAATTTTGTAGT+TGG - chr4_3:62621226-62621245 None:intergenic 25.0%
! TTTATCTTCTATGAGCAAAT+AGG + chr4_3:62621245-62621264 Msa0654450:intron 25.0%
! TTATCTTCTATGAGCAAATA+GGG + chr4_3:62621246-62621265 Msa0654450:intron 25.0%
! CAATGTTAATATCAAGACTA+AGG - chr4_3:62621274-62621293 None:intergenic 25.0%
!!! TTAACATTGACTTATGGATA+TGG + chr4_3:62621285-62621304 Msa0654450:intron 25.0%
! AAAATGTGGAGAAAATTGTA+AGG - chr4_3:62621312-62621331 None:intergenic 25.0%
!!! CCACCTTTAACATTTTTTTT+TGG - chr4_3:62621721-62621740 None:intergenic 25.0%
! CCAAAAAAAAATGTTAAAGG+TGG + chr4_3:62621718-62621737 Msa0654450:intron 25.0%
! AAAAATAACAACGAAAAAGC+TGG + chr4_3:62621866-62621885 Msa0654450:intron 25.0%
!! GTGAAATATCAATTTTGTGT+TGG - chr4_3:62622142-62622161 None:intergenic 25.0%
! AAATTATCTTCCACCATTAT+TGG - chr4_3:62622388-62622407 None:intergenic 25.0%
! CTTCAACTAATGAAAATAAC+TGG - chr4_3:62622576-62622595 None:intergenic 25.0%
! TGAAGATTCATGTAGTTATA+TGG + chr4_3:62622591-62622610 Msa0654450:intron 25.0%
!!! AAGCAATAGAATCTTTTTTC+TGG - chr4_3:62622617-62622636 None:intergenic 25.0%
! GTGCTTTACATTCTTTAATT+TGG + chr4_3:62622906-62622925 Msa0654450:three_prime_UTR 25.0%
! GTATCTGCTAGAAATATTTA+TGG + chr4_3:62623431-62623450 Msa0654450:three_prime_UTR 25.0%
! AAATATAACTATGTAAGGCA+AGG + chr4_3:62623476-62623495 Msa0654450:three_prime_UTR 25.0%
AACGTGAGTTTAATGGAAAA+TGG + chr4_3:62617577-62617596 Msa0654450:intron 30.0%
! CAACTTGTTTGTTTGTTACT+CGG - chr4_3:62617611-62617630 None:intergenic 30.0%
AAGTATAACAGACTTGAAGA+AGG - chr4_3:62617834-62617853 None:intergenic 30.0%
AGATGAGCATCAAAATAATC+AGG - chr4_3:62618033-62618052 None:intergenic 30.0%
GATCTTGTTAATTAATCCAG+AGG - chr4_3:62618106-62618125 None:intergenic 30.0%
! TCCTTTGATGAGGTATTAAT+TGG + chr4_3:62618143-62618162 Msa0654450:intron 30.0%
TCCAATTAATACCTCATCAA+AGG - chr4_3:62618147-62618166 None:intergenic 30.0%
GGCCCAATTAAATGAAAAAT+AGG - chr4_3:62618331-62618350 None:intergenic 30.0%
AAGGTTATATGAAATGTGTG+TGG + chr4_3:62618430-62618449 Msa0654450:intron 30.0%
GCGAAAAATTTCAATGCTTA+CGG - chr4_3:62618577-62618596 None:intergenic 30.0%
ACTGTTTAGCAATTTCATGT+AGG + chr4_3:62618665-62618684 Msa0654450:intron 30.0%
!! GTTAGTTTGTTAGTAGTTGT+TGG + chr4_3:62618750-62618769 Msa0654450:intron 30.0%
TGTACTTAACATCTCATATC+TGG + chr4_3:62618868-62618887 Msa0654450:intron 30.0%
ATTACTTTCGGCAACAAAAA+GGG - chr4_3:62619243-62619262 None:intergenic 30.0%
TGATGCTTGATCATTACTTT+CGG - chr4_3:62619255-62619274 None:intergenic 30.0%
TTACTGTTGTTCTTTCCATA+CGG + chr4_3:62619285-62619304 Msa0654450:intron 30.0%
! TAGGAAAAGAATAGAAGTGT+AGG - chr4_3:62619329-62619348 None:intergenic 30.0%
! TCTAGTCTTTAACAAGAGAA+AGG + chr4_3:62619420-62619439 Msa0654450:intron 30.0%
! TCTGCAATCAACATTTTTGT+AGG + chr4_3:62619452-62619471 Msa0654450:intron 30.0%
AGCGAGTAATACAAAAACAT+AGG - chr4_3:62619560-62619579 None:intergenic 30.0%
GGAACATATTCCAAACTAAT+TGG + chr4_3:62619721-62619740 Msa0654450:intron 30.0%
TTAGTCATTTCAATGGTTGA+CGG + chr4_3:62619831-62619850 Msa0654450:intron 30.0%
!! TCTTTCTTTTTCATTCAACC+TGG - chr4_3:62619965-62619984 None:intergenic 30.0%
!! ATTACTTTTGGCAGCAAAAA+GGG - chr4_3:62620048-62620067 None:intergenic 30.0%
CATTTCCCACCATTTAAATA+TGG + chr4_3:62620165-62620184 Msa0654450:intron 30.0%
AATAAATCTTGAGTACCTTC+AGG - chr4_3:62620337-62620356 None:intergenic 30.0%
! ATAATTTTGTAACTGCGTTG+AGG + chr4_3:62620369-62620388 Msa0654450:intron 30.0%
GTCAATTAACTGTGAATTAC+AGG - chr4_3:62620848-62620867 None:intergenic 30.0%
GTAATTCACAGTTAATTGAC+CGG + chr4_3:62620848-62620867 Msa0654450:intron 30.0%
TAATTCACAGTTAATTGACC+GGG + chr4_3:62620849-62620868 Msa0654450:intron 30.0%
!!! AAATTCTTTTGGGTTTATCC+CGG - chr4_3:62620870-62620889 None:intergenic 30.0%
ACTATGAATAATCAGTAGGA+TGG + chr4_3:62621020-62621039 Msa0654450:intron 30.0%
!! CAGTATCGAACAAATTTTAC+AGG + chr4_3:62621063-62621082 Msa0654450:intron 30.0%
AAAAATCAACAGCAGGAAAA+AGG - chr4_3:62621393-62621412 None:intergenic 30.0%
TCATTTCTTTCGCTGTATTA+AGG + chr4_3:62621489-62621508 Msa0654450:three_prime_UTR 30.0%
TAAAGGCAACAGTTAAATGT+TGG - chr4_3:62621519-62621538 None:intergenic 30.0%
ACTTTGTTAATACTCAGGAA+TGG + chr4_3:62621693-62621712 Msa0654450:intron 30.0%
AAGTGTATACTATCACTCTT+TGG + chr4_3:62621972-62621991 Msa0654450:intron 30.0%
CATGTGAGAAACACTAAAAT+TGG + chr4_3:62622056-62622075 Msa0654450:intron 30.0%
!!! TACATATTGGCTGTTGATTT+TGG - chr4_3:62622230-62622249 None:intergenic 30.0%
TTGGAAAGAGTCATACATAT+TGG - chr4_3:62622243-62622262 None:intergenic 30.0%
TTGCTATATCTAGTAAGCTT+GGG - chr4_3:62622322-62622341 None:intergenic 30.0%
TACTCTATTGTGACCAATAA+TGG + chr4_3:62622372-62622391 Msa0654450:intron 30.0%
CAAGCCATCGTTTAATTATT+GGG + chr4_3:62622439-62622458 Msa0654450:intron 30.0%
AAGCCATCGTTTAATTATTG+GGG + chr4_3:62622440-62622459 Msa0654450:intron 30.0%
TTTCACACTCTAACTACATT+TGG + chr4_3:62622732-62622751 Msa0654450:three_prime_UTR 30.0%
ATATTTCTTTCTTCACCAAG+GGG - chr4_3:62622770-62622789 None:intergenic 30.0%
GATATTTCTTTCTTCACCAA+GGG - chr4_3:62622771-62622790 None:intergenic 30.0%
TCAGCAGTTCAATGTTTAAA+TGG - chr4_3:62623316-62623335 None:intergenic 30.0%
CAAAGAAAAAGGATGTTTGA+CGG - chr4_3:62623529-62623548 None:intergenic 30.0%
GTAACGTAACGTGAGTTTAA+TGG + chr4_3:62617570-62617589 Msa0654450:intron 35.0%
TCTGATAAACACAGAGTCAA+CGG - chr4_3:62617876-62617895 None:intergenic 35.0%
GACTCTGTGTTTATCAGATT+CGG + chr4_3:62617878-62617897 Msa0654450:intron 35.0%
TTATCAGATTCGGAGCAATA+TGG + chr4_3:62617888-62617907 Msa0654450:intron 35.0%
! ATCGTTTTGCAACGATGTAA+CGG - chr4_3:62617940-62617959 None:intergenic 35.0%
CAAAGCAATGATGTCAAACA+AGG - chr4_3:62618550-62618569 None:intergenic 35.0%
!! AGTTTGTTAGTAGTTGTTGG+AGG + chr4_3:62618753-62618772 Msa0654450:intron 35.0%
AGTGGAGTGATAACTGATAA+GGG - chr4_3:62618800-62618819 None:intergenic 35.0%
TGTTAACATTGTGGGATGTA+GGG - chr4_3:62618848-62618867 None:intergenic 35.0%
ATGTTAACATTGTGGGATGT+AGG - chr4_3:62618849-62618868 None:intergenic 35.0%
CATTACTTTCGGCAACAAAA+AGG - chr4_3:62619244-62619263 None:intergenic 35.0%
GTTTATGTTACATTGTCGTG+TGG + chr4_3:62619518-62619537 Msa0654450:intron 35.0%
!! CATTACTTTTGGCAGCAAAA+AGG - chr4_3:62620049-62620068 None:intergenic 35.0%
TTACCGTTCTTCTATCCATA+CGG + chr4_3:62620090-62620109 Msa0654450:intron 35.0%
TAACCGTATGGATAGAAGAA+CGG - chr4_3:62620096-62620115 None:intergenic 35.0%
ATACGAATGCAATAACCGTA+TGG - chr4_3:62620108-62620127 None:intergenic 35.0%
GGGAAATGAAAGATGGTAAT+AGG - chr4_3:62620153-62620172 None:intergenic 35.0%
! AAATGGTGGGAAATGAAAGA+TGG - chr4_3:62620160-62620179 None:intergenic 35.0%
! GATTAAATTTGGGATCCTGA+AGG + chr4_3:62620319-62620338 Msa0654450:intron 35.0%
GGGATACACTGATGATAAAA+CGG + chr4_3:62620471-62620490 Msa0654450:CDS 35.0%
TATGACTTGAAATTGCACCA+CGG - chr4_3:62620537-62620556 None:intergenic 35.0%
ATTTGCGTACCAAATGTTCA+CGG - chr4_3:62620591-62620610 None:intergenic 35.0%
AACAAGTTCAATCCTCATCT+TGG + chr4_3:62620680-62620699 Msa0654450:intron 35.0%
ACAAGTTCAATCCTCATCTT+GGG + chr4_3:62620681-62620700 Msa0654450:intron 35.0%
CTGAAAAGTAAGATTGCAAC+TGG - chr4_3:62620774-62620793 None:intergenic 35.0%
!! CAGTTGCAATCTTACTTTTC+AGG + chr4_3:62620772-62620791 Msa0654450:intron 35.0%
!! TTGCAATCTTACTTTTCAGG+AGG + chr4_3:62620775-62620794 Msa0654450:intron 35.0%
!! TCTTACTTTTCAGGAGGATT+AGG + chr4_3:62620781-62620800 Msa0654450:intron 35.0%
!! CTTACTTTTCAGGAGGATTA+GGG + chr4_3:62620782-62620801 Msa0654450:intron 35.0%
!! TTACTTTTCAGGAGGATTAG+GGG + chr4_3:62620783-62620802 Msa0654450:intron 35.0%
!! TTAAAAGTACCGTGCATCAT+AGG + chr4_3:62620991-62621010 Msa0654450:intron 35.0%
!! TAAAAGTACCGTGCATCATA+GGG + chr4_3:62620992-62621011 Msa0654450:intron 35.0%
! ACACTTCTTCTTTTGTCACA+GGG - chr4_3:62621355-62621374 None:intergenic 35.0%
! AACACTTCTTCTTTTGTCAC+AGG - chr4_3:62621356-62621375 None:intergenic 35.0%
ATCATAAACCACAAGCATTC+AGG - chr4_3:62621443-62621462 None:intergenic 35.0%
GGATAATGTAAGAGAGACAA+AGG + chr4_3:62621602-62621621 Msa0654450:three_prime_UTR 35.0%
TAATGTAAGAGAGACAAAGG+AGG + chr4_3:62621605-62621624 Msa0654450:three_prime_UTR 35.0%
GAGTATTAACAAAGTCTTGG+AGG - chr4_3:62621688-62621707 None:intergenic 35.0%
CCTGAGTATTAACAAAGTCT+TGG - chr4_3:62621691-62621710 None:intergenic 35.0%
CCAAGACTTTGTTAATACTC+AGG + chr4_3:62621688-62621707 Msa0654450:intron 35.0%
TATCACTCTTTGGTTGTTTG+TGG + chr4_3:62621982-62622001 Msa0654450:intron 35.0%
ATCACTCTTTGGTTGTTTGT+GGG + chr4_3:62621983-62622002 Msa0654450:intron 35.0%
TCTCACATGCAGTATTAACA+GGG - chr4_3:62622045-62622064 None:intergenic 35.0%
TTCTCACATGCAGTATTAAC+AGG - chr4_3:62622046-62622065 None:intergenic 35.0%
GGATGAGATCTTATACAATC+AGG - chr4_3:62622121-62622140 None:intergenic 35.0%
!!! GTTGATTTTGGTTGGATTGT+GGG - chr4_3:62622218-62622237 None:intergenic 35.0%
!!! TGTTGATTTTGGTTGGATTG+TGG - chr4_3:62622219-62622238 None:intergenic 35.0%
!!! TATTGGCTGTTGATTTTGGT+TGG - chr4_3:62622226-62622245 None:intergenic 35.0%
TATGTATGACTCTTTCCAAC+AGG + chr4_3:62622244-62622263 Msa0654450:intron 35.0%
! CTTGCTATATCTAGTAAGCT+TGG - chr4_3:62622323-62622342 None:intergenic 35.0%
TCTATTGTGACCAATAATGG+TGG + chr4_3:62622375-62622394 Msa0654450:intron 35.0%
GCAAGCCATCGTTTAATTAT+TGG + chr4_3:62622438-62622457 Msa0654450:intron 35.0%
AGCCATCGTTTAATTATTGG+GGG + chr4_3:62622441-62622460 Msa0654450:intron 35.0%
!! TCTGTTTTTCACTTGAACTC+AGG + chr4_3:62622655-62622674 Msa0654450:intron 35.0%
GGATATTTCTTTCTTCACCA+AGG - chr4_3:62622772-62622791 None:intergenic 35.0%
CGAAACACAAATTACTAGGT+CGG - chr4_3:62622824-62622843 None:intergenic 35.0%
GAAGCGAAACACAAATTACT+AGG - chr4_3:62622828-62622847 None:intergenic 35.0%
ATACTCACTTTCTATCCACA+AGG - chr4_3:62623078-62623097 None:intergenic 35.0%
! TGCTTTTCGTTCAGTATGAT+AGG + chr4_3:62623165-62623184 Msa0654450:intron 35.0%
AGCATCAACAACTAACTATC+CGG + chr4_3:62623194-62623213 Msa0654450:three_prime_UTR 35.0%
GATGAAAATGTCGAGAAACA+GGG + chr4_3:62623258-62623277 Msa0654450:three_prime_UTR 35.0%
ATGAAAATGTCGAGAAACAG+GGG + chr4_3:62623259-62623278 Msa0654450:three_prime_UTR 35.0%
GATACTAAATGTTAGCTGCA+AGG - chr4_3:62623416-62623435 None:intergenic 35.0%
! ACATCCTTTTTCTTTGCTGA+TGG + chr4_3:62623533-62623552 Msa0654450:three_prime_UTR 35.0%
! CATCCTTTTTCTTTGCTGAT+GGG + chr4_3:62623534-62623553 Msa0654450:three_prime_UTR 35.0%
TTTCCCATCAGCAAAGAAAA+AGG - chr4_3:62623540-62623559 None:intergenic 35.0%
ACAGAGTCAACGGTTGAATT+AGG - chr4_3:62617866-62617885 None:intergenic 40.0%
! TTTTGTCTCCTTCCACATTG+TGG - chr4_3:62617990-62618009 None:intergenic 40.0%
GAGCAATACATAAACACAGG+AGG - chr4_3:62618235-62618254 None:intergenic 40.0%
GACGAGCAATACATAAACAC+AGG - chr4_3:62618238-62618257 None:intergenic 40.0%
TATGTATTGCTCGTCCTTTG+TGG + chr4_3:62618243-62618262 Msa0654450:intron 40.0%
AGTCTCACCGATCAATAGTA+GGG - chr4_3:62618354-62618373 None:intergenic 40.0%
! GACTGATTCCCTGAATTTGT+CGG + chr4_3:62618370-62618389 Msa0654450:intron 40.0%
TGTCAACTAGATTGCTTGCT+TGG + chr4_3:62618521-62618540 Msa0654450:intron 40.0%
ACGTCAAGACACATTTGTTC+TGG - chr4_3:62618609-62618628 None:intergenic 40.0%
GAGTGGAGTGATAACTGATA+AGG - chr4_3:62618801-62618820 None:intergenic 40.0%
TACTAACACCGTGAGTCATT+CGG + chr4_3:62619028-62619047 Msa0654450:intron 40.0%
ATACGAATGCAAGAACCGTA+TGG - chr4_3:62619303-62619322 None:intergenic 40.0%
GACGAGTAATGCATATGCAT+AGG - chr4_3:62619615-62619634 None:intergenic 40.0%
TATGCATTACTCGTCTTGTC+TGG + chr4_3:62619620-62619639 Msa0654450:intron 40.0%
TTGATCACGCTAGTAGTCTT+TGG + chr4_3:62619699-62619718 Msa0654450:intron 40.0%
TGATCACGCTAGTAGTCTTT+GGG + chr4_3:62619700-62619719 Msa0654450:intron 40.0%
TCAGTAATCGACGTTGTTGT+AGG + chr4_3:62620256-62620275 Msa0654450:intron 40.0%
CAGTAATCGACGTTGTTGTA+GGG + chr4_3:62620257-62620276 Msa0654450:intron 40.0%
AGTAATCGACGTTGTTGTAG+GGG + chr4_3:62620258-62620277 Msa0654450:intron 40.0%
GGATCCCAAATTTAATCCTG+AGG - chr4_3:62620316-62620335 None:intergenic 40.0%
CATAACTACTCTTCCGAAAC+AGG - chr4_3:62620636-62620655 None:intergenic 40.0%
ATACTTTCCCAGTCTGAGTA+TGG + chr4_3:62620954-62620973 Msa0654450:intron 40.0%
ATGGTTTCCATACTCAGACT+GGG - chr4_3:62620964-62620983 None:intergenic 40.0%
AATGGTTTCCATACTCAGAC+TGG - chr4_3:62620965-62620984 None:intergenic 40.0%
!! AAAAGTACCGTGCATCATAG+GGG + chr4_3:62620993-62621012 Msa0654450:intron 40.0%
! TCCACATTTTTCCTCATGCA+GGG + chr4_3:62621322-62621341 Msa0654450:intron 40.0%
!!! TCCTGCTGTTGATTTTTCAC+TGG + chr4_3:62621396-62621415 Msa0654450:CDS 40.0%
GTTTCAGATAGACAGTGATG+AGG + chr4_3:62621566-62621585 Msa0654450:three_prime_UTR 40.0%
TAGACAGTGATGAGGATGTT+TGG + chr4_3:62621574-62621593 Msa0654450:three_prime_UTR 40.0%
AACAAAGTCTTGGAGGTTTC+TGG - chr4_3:62621681-62621700 None:intergenic 40.0%
ACATGCAGTATTAACAGGGA+CGG - chr4_3:62622041-62622060 None:intergenic 40.0%
ATGGACGAAAGGAAGTAAAG+GGG - chr4_3:62622192-62622211 None:intergenic 40.0%
CATGGACGAAAGGAAGTAAA+GGG - chr4_3:62622193-62622212 None:intergenic 40.0%
ACATGGACGAAAGGAAGTAA+AGG - chr4_3:62622194-62622213 None:intergenic 40.0%
TATGACTCTTTCCAACAGGA+AGG + chr4_3:62622248-62622267 Msa0654450:intron 40.0%
ATGACTCTTTCCAACAGGAA+GGG + chr4_3:62622249-62622268 Msa0654450:intron 40.0%
GTCACAATAGAGTACAGCAA+AGG - chr4_3:62622366-62622385 None:intergenic 40.0%
GACCCCCAATAATTAAACGA+TGG - chr4_3:62622446-62622465 None:intergenic 40.0%
! TTTCACTTGAACTCAGGTTG+TGG + chr4_3:62622661-62622680 Msa0654450:intron 40.0%
AAATTACTAGGTCGGAGGAA+CGG - chr4_3:62622816-62622835 None:intergenic 40.0%
AACACAAATTACTAGGTCGG+AGG - chr4_3:62622821-62622840 None:intergenic 40.0%
! TTCGCTTCTCTTGTTATGTG+AGG + chr4_3:62622840-62622859 Msa0654450:intron 40.0%
TGTTTAACACCAACAGTTGC+AGG - chr4_3:62622941-62622960 None:intergenic 40.0%
GCATCAACAACTAACTATCC+GGG + chr4_3:62623195-62623214 Msa0654450:three_prime_UTR 40.0%
! TTTTCATCCACAGCATCACT+AGG - chr4_3:62623246-62623265 None:intergenic 40.0%
GGATGAAAATGTCGAGAAAC+AGG + chr4_3:62623257-62623276 Msa0654450:three_prime_UTR 40.0%
TAACTATGTAAGGCAAGGCA+AGG + chr4_3:62623481-62623500 Msa0654450:three_prime_UTR 40.0%
! TCTTGATACTTCTGAGAGCG+CGG - chr4_3:62617650-62617669 None:intergenic 45.0%
GGGAACAGGAAGAATCTTTG+TGG - chr4_3:62617763-62617782 None:intergenic 45.0%
TAGCAGATCGAGAGAGAAAG+CGG - chr4_3:62617784-62617803 None:intergenic 45.0%
! AGCAATATGGATTGCGTTGC+CGG + chr4_3:62617901-62617920 Msa0654450:CDS 45.0%
TAACGGAAACAAACACGTGC+CGG - chr4_3:62617923-62617942 None:intergenic 45.0%
TCATCTCACTCCTCTTGGAT+GGG + chr4_3:62618047-62618066 Msa0654450:intron 45.0%
CGTAAACATGTTCGTTCCTC+TGG + chr4_3:62618087-62618106 Msa0654450:CDS 45.0%
TCATCGCTTCTCCTTTGATG+AGG + chr4_3:62618133-62618152 Msa0654450:CDS 45.0%
TATTGCTCGTCCTTTGTGGT+TGG + chr4_3:62618247-62618266 Msa0654450:intron 45.0%
TCAACTTGGACCAACCACAA+AGG - chr4_3:62618260-62618279 None:intergenic 45.0%
! TCCAAGTTGACTTTGCTGCA+TGG + chr4_3:62618270-62618289 Msa0654450:intron 45.0%
TCCATGCAGCAAAGTCAACT+TGG - chr4_3:62618274-62618293 None:intergenic 45.0%
TCTCACCGATCAATAGTAGG+GGG - chr4_3:62618352-62618371 None:intergenic 45.0%
GTCTCACCGATCAATAGTAG+GGG - chr4_3:62618353-62618372 None:intergenic 45.0%
CAGTCTCACCGATCAATAGT+AGG - chr4_3:62618355-62618374 None:intergenic 45.0%
CCTAAGAGCCGACAAATTCA+GGG - chr4_3:62618381-62618400 None:intergenic 45.0%
TAACTGATAAGGGTGGTCTC+AGG - chr4_3:62618790-62618809 None:intergenic 45.0%
GGAGTGATAACTGATAAGGG+TGG - chr4_3:62618797-62618816 None:intergenic 45.0%
! GATTGGTACCGAATGACTCA+CGG - chr4_3:62619039-62619058 None:intergenic 45.0%
AGGACTTTGCAAACAGCTGT+TGG + chr4_3:62620433-62620452 Msa0654450:intron 45.0%
GGACTTTGCAAACAGCTGTT+GGG + chr4_3:62620434-62620453 Msa0654450:intron 45.0%
GACTTTGCAAACAGCTGTTG+GGG + chr4_3:62620435-62620454 Msa0654450:CDS 45.0%
! CAAACAGCTGTTGGGGTATT+TGG + chr4_3:62620442-62620461 Msa0654450:CDS 45.0%
AATGCAGGAAATAGCTTCCG+TGG + chr4_3:62620517-62620536 Msa0654450:CDS 45.0%
AATTGCCCACCAATTGTTGC+TGG + chr4_3:62620556-62620575 Msa0654450:CDS 45.0%
CAAAGTTCGCCAGCAACAAT+TGG - chr4_3:62620568-62620587 None:intergenic 45.0%
CGAACTTTGCCGTGAACATT+TGG + chr4_3:62620579-62620598 Msa0654450:CDS 45.0%
AATCCTCATCTTGGGATGAC+AGG + chr4_3:62620689-62620708 Msa0654450:intron 45.0%
TAAGATTGCAACTGGTGTGC+AGG - chr4_3:62620766-62620785 None:intergenic 45.0%
! ACTGGGAAAGTATGAGGTAC+AGG - chr4_3:62620947-62620966 None:intergenic 45.0%
! ACTCAGACTGGGAAAGTATG+AGG - chr4_3:62620953-62620972 None:intergenic 45.0%
AGTAGATCCCCTATGATGCA+CGG - chr4_3:62621003-62621022 None:intergenic 45.0%
! CTCCACATTTTTCCTCATGC+AGG + chr4_3:62621321-62621340 Msa0654450:intron 45.0%
TCCCTGCATGAGGAAAAATG+TGG - chr4_3:62621326-62621345 None:intergenic 45.0%
GCCAGTGAAAAATCAACAGC+AGG - chr4_3:62621400-62621419 None:intergenic 45.0%
TTCAAGTGCCTGAATGCTTG+TGG + chr4_3:62621432-62621451 Msa0654450:exon 45.0%
ACAGTGATGAGGATGTTTGG+TGG + chr4_3:62621577-62621596 Msa0654450:three_prime_UTR 45.0%
! TGATGAGGATGTTTGGTGGA+AGG + chr4_3:62621581-62621600 Msa0654450:three_prime_UTR 45.0%
AAGAGAGACAAAGGAGGAAC+TGG + chr4_3:62621611-62621630 Msa0654450:three_prime_UTR 45.0%
TGGACGAAAGGAAGTAAAGG+GGG - chr4_3:62622191-62622210 None:intergenic 45.0%
ATTGTGGGAACATGGACGAA+AGG - chr4_3:62622203-62622222 None:intergenic 45.0%
TTGGTTGGATTGTGGGAACA+TGG - chr4_3:62622211-62622230 None:intergenic 45.0%
ATAGCGATTGTGACACACAG+TGG + chr4_3:62622702-62622721 Msa0654450:three_prime_UTR 45.0%
TTTCTTTCTTCACCAAGGGG+TGG - chr4_3:62622767-62622786 None:intergenic 45.0%
! GGTATTGAGAGCTTACTGCT+TGG - chr4_3:62622793-62622812 None:intergenic 45.0%
AATTACTAGGTCGGAGGAAC+GGG - chr4_3:62622815-62622834 None:intergenic 45.0%
GATCAAGTTCCTGCAACTGT+TGG + chr4_3:62622929-62622948 Msa0654450:three_prime_UTR 45.0%
TGACGACGAATCTGACTTAG+AGG + chr4_3:62622961-62622980 Msa0654450:three_prime_UTR 45.0%
GACGACGAATCTGACTTAGA+GGG + chr4_3:62622962-62622981 Msa0654450:three_prime_UTR 45.0%
CACAATTGGCAAAGCTGCAA+AGG - chr4_3:62623039-62623058 None:intergenic 45.0%
CTTTCTATCCACAAGGACCA+TGG - chr4_3:62623071-62623090 None:intergenic 45.0%
AAAGGATGTTTGACGGCACT+GGG - chr4_3:62623522-62623541 None:intergenic 45.0%
AAAAGGATGTTTGACGGCAC+TGG - chr4_3:62623523-62623542 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTAACT+CGG - chr4_3:62618411-62618430 None:intergenic 5.0%
!! AGTTAAAAAAAAAAAAAAAA+AGG + chr4_3:62618411-62618430 Msa0654450:intron 5.0%
!!! TAATATTTTTCATATTAAAA+TGG - chr4_3:62619372-62619391 None:intergenic 5.0%
! CTTGATACTTCTGAGAGCGC+GGG - chr4_3:62617649-62617668 None:intergenic 50.0%
! GAAGTATCAAGAGCGAGCGA+AGG + chr4_3:62617658-62617677 Msa0654450:intron 50.0%
TTGTGGTGTGTGAGTGACGA+GGG - chr4_3:62617746-62617765 None:intergenic 50.0%
TTTGTGGTGTGTGAGTGACG+AGG - chr4_3:62617747-62617766 None:intergenic 50.0%
AGCAGATCGAGAGAGAAAGC+GGG - chr4_3:62617783-62617802 None:intergenic 50.0%
CTCTCGATCTGCTACTGCTA+CGG + chr4_3:62617790-62617809 Msa0654450:intron 50.0%
ACCTTGTGAGACACGCTCAA+GGG + chr4_3:62617962-62617981 Msa0654450:CDS 50.0%
CAAGGGATCCACAATGTGGA+AGG + chr4_3:62617979-62617998 Msa0654450:CDS 50.0%
GATGCTCATCTCACTCCTCT+TGG + chr4_3:62618042-62618061 Msa0654450:intron 50.0%
CTCATCTCACTCCTCTTGGA+TGG + chr4_3:62618046-62618065 Msa0654450:intron 50.0%
TCAACCTGTTCCCATCCAAG+AGG - chr4_3:62618060-62618079 None:intergenic 50.0%
TTGGGCCCCCTACTATTGAT+CGG + chr4_3:62618344-62618363 Msa0654450:intron 50.0%
!! CCCTGAATTTGTCGGCTCTT+AGG + chr4_3:62618378-62618397 Msa0654450:intron 50.0%
GCCTAAGAGCCGACAAATTC+AGG - chr4_3:62618382-62618401 None:intergenic 50.0%
!! GAATTTGTCGGCTCTTAGGC+CGG + chr4_3:62618382-62618401 Msa0654450:intron 50.0%
! GACTTGGTAGCTGGCAGTTA+AGG - chr4_3:62618823-62618842 None:intergenic 50.0%
! ACAGCTGTTGGGGTATTTGG+TGG + chr4_3:62620445-62620464 Msa0654450:CDS 50.0%
! CAGCTGTTGGGGTATTTGGT+GGG + chr4_3:62620446-62620465 Msa0654450:CDS 50.0%
! AGCTGTTGGGGTATTTGGTG+GGG + chr4_3:62620447-62620466 Msa0654450:CDS 50.0%
AACGGATGTGCTGCCTCTTA+TGG + chr4_3:62620489-62620508 Msa0654450:CDS 50.0%
CCTGCATTTGCCACCATAAG+AGG - chr4_3:62620505-62620524 None:intergenic 50.0%
CCTCTTATGGTGGCAAATGC+AGG + chr4_3:62620502-62620521 Msa0654450:CDS 50.0%
GTTCGCCAGCAACAATTGGT+GGG - chr4_3:62620564-62620583 None:intergenic 50.0%
AGTTCGCCAGCAACAATTGG+TGG - chr4_3:62620565-62620584 None:intergenic 50.0%
CAACCTGTCATCCCAAGATG+AGG - chr4_3:62620695-62620714 None:intergenic 50.0%
AAAGGAGGAACTGGCAGCTA+GGG + chr4_3:62621620-62621639 Msa0654450:three_prime_UTR 50.0%
GGACGAAAGGAAGTAAAGGG+GGG - chr4_3:62622190-62622209 None:intergenic 50.0%
GATCTCATCACCCTTCCTGT+TGG - chr4_3:62622262-62622281 None:intergenic 50.0%
TGGAAATGATTGCCACCCCT+TGG + chr4_3:62622752-62622771 Msa0654450:three_prime_UTR 50.0%
ATTACTAGGTCGGAGGAACG+GGG - chr4_3:62622814-62622833 None:intergenic 50.0%
CATGGAGCGAAGCTCACAAT+TGG - chr4_3:62623053-62623072 None:intergenic 50.0%
CAATTGTGAGCTTCGCTCCA+TGG + chr4_3:62623051-62623070 Msa0654450:three_prime_UTR 50.0%
TATCCGGGCAAGATACCTTC+AGG + chr4_3:62623210-62623229 Msa0654450:three_prime_UTR 50.0%
ATCCGGGCAAGATACCTTCA+GGG + chr4_3:62623211-62623230 Msa0654450:three_prime_UTR 50.0%
TATGTAAGGCAAGGCAAGGC+AGG + chr4_3:62623485-62623504 Msa0654450:three_prime_UTR 50.0%
TCGAGAGAGAAAGCGGGAAC+AGG - chr4_3:62617777-62617796 None:intergenic 55.0%
CACCTTGTGAGACACGCTCA+AGG + chr4_3:62617961-62617980 Msa0654450:CDS 55.0%
TCCCTTGAGCGTGTCTCACA+AGG - chr4_3:62617966-62617985 None:intergenic 55.0%
CGCTCAAGGGATCCACAATG+TGG + chr4_3:62617975-62617994 Msa0654450:CDS 55.0%
CACTCCTCTTGGATGGGAAC+AGG + chr4_3:62618053-62618072 Msa0654450:intron 55.0%
GGTAGCTGGCAGTTAAGGAG+TGG - chr4_3:62618818-62618837 None:intergenic 55.0%
!! TGTAGGGTCGACTTGGTAGC+TGG - chr4_3:62618832-62618851 None:intergenic 55.0%
TGTGGGATGTAGGGTCGACT+TGG - chr4_3:62618839-62618858 None:intergenic 55.0%
! TGTTGGGGTATTTGGTGGGG+AGG + chr4_3:62620450-62620469 Msa0654450:CDS 55.0%
! GTTGGGGTATTTGGTGGGGA+GGG + chr4_3:62620451-62620470 Msa0654450:CDS 55.0%
GGATGTGCTGCCTCTTATGG+TGG + chr4_3:62620492-62620511 Msa0654450:CDS 55.0%
AGGGATGAACTCCCTGCATG+AGG - chr4_3:62621336-62621355 None:intergenic 55.0%
CAAAGGAGGAACTGGCAGCT+AGG + chr4_3:62621619-62621638 Msa0654450:three_prime_UTR 55.0%
AAGGAGGAACTGGCAGCTAG+GGG + chr4_3:62621621-62621640 Msa0654450:three_prime_UTR 55.0%
GGGGGGTGGAGTTCTTAAAC+TGG + chr4_3:62621640-62621659 Msa0654450:three_prime_UTR 55.0%
AGGAAGTAAAGGGGGGCTTC+TGG - chr4_3:62622183-62622202 None:intergenic 55.0%
!! AGCCCTGAAGGTATCTTGCC+CGG - chr4_3:62623216-62623235 None:intergenic 55.0%
GGACAAGCCTAGTGATGCTG+TGG + chr4_3:62623236-62623255 Msa0654450:three_prime_UTR 55.0%
GCGTCACTGATGCGCTGTGT+TGG + chr4_3:62619195-62619214 Msa0654450:intron 60.0%
GCGTCACTGATGCGCTGTGT+TGG + chr4_3:62619195-62619214 Msa0654450:intron 60.0%
AGGAGGAACTGGCAGCTAGG+GGG + chr4_3:62621622-62621641 Msa0654450:three_prime_UTR 60.0%
GCTTCGCTCCATGGTCCTTG+TGG + chr4_3:62623060-62623079 Msa0654450:three_prime_UTR 60.0%
GGGCAAGATACCTTCAGGGC+TGG + chr4_3:62623215-62623234 Msa0654450:three_prime_UTR 60.0%
CTAGGCTTGTCCAGCCCTGA+AGG - chr4_3:62623228-62623247 None:intergenic 60.0%
! TGAGAGCGCGGGTACAGTGC+AGG - chr4_3:62617638-62617657 None:intergenic 65.0%
GGAGGAACTGGCAGCTAGGG+GGG + chr4_3:62621623-62621642 Msa0654450:three_prime_UTR 65.0%
GGAACTGGCAGCTAGGGGGG+TGG + chr4_3:62621626-62621645 Msa0654450:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 62617563 62623622 62617563 ID=Msa0654450;Name=Msa0654450
chr4_3 mRNA 62617563 62623622 62617563 ID=Msa0654450-mRNA-1;Parent=Msa0654450;Name=Msa0654450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.71|0.62|0.87|0.42|0.37|8|981|159
chr4_3 exon 62617563 62617569 62617563 ID=Msa0654450-mRNA-1:exon:17426;Parent=Msa0654450-mRNA-1
chr4_3 exon 62617895 62618019 62617895 ID=Msa0654450-mRNA-1:exon:17427;Parent=Msa0654450-mRNA-1
chr4_3 exon 62618075 62618154 62618075 ID=Msa0654450-mRNA-1:exon:17428;Parent=Msa0654450-mRNA-1
chr4_3 exon 62620435 62620600 62620435 ID=Msa0654450-mRNA-1:exon:17429;Parent=Msa0654450-mRNA-1
chr4_3 exon 62621343 62621661 62621343 ID=Msa0654450-mRNA-1:exon:17430;Parent=Msa0654450-mRNA-1
chr4_3 exon 62622677 62622796 62622677 ID=Msa0654450-mRNA-1:exon:17431;Parent=Msa0654450-mRNA-1
chr4_3 exon 62622890 62623089 62622890 ID=Msa0654450-mRNA-1:exon:17432;Parent=Msa0654450-mRNA-1
chr4_3 exon 62623179 62623622 62623179 ID=Msa0654450-mRNA-1:exon:17433;Parent=Msa0654450-mRNA-1
chr4_3 CDS 62617563 62617569 62617563 ID=Msa0654450-mRNA-1:cds;Parent=Msa0654450-mRNA-1
chr4_3 CDS 62617895 62618019 62617895 ID=Msa0654450-mRNA-1:cds;Parent=Msa0654450-mRNA-1
chr4_3 CDS 62618075 62618154 62618075 ID=Msa0654450-mRNA-1:cds;Parent=Msa0654450-mRNA-1
chr4_3 CDS 62620435 62620600 62620435 ID=Msa0654450-mRNA-1:cds;Parent=Msa0654450-mRNA-1
chr4_3 CDS 62621343 62621444 62621343 ID=Msa0654450-mRNA-1:cds;Parent=Msa0654450-mRNA-1
chr4_3 three_prime_UTR 62621445 62621661 62621445 ID=Msa0654450-mRNA-1:three_prime_utr;Parent=Msa0654450-mRNA-1
chr4_3 three_prime_UTR 62622677 62622796 62622677 ID=Msa0654450-mRNA-1:three_prime_utr;Parent=Msa0654450-mRNA-1
chr4_3 three_prime_UTR 62622890 62623089 62622890 ID=Msa0654450-mRNA-1:three_prime_utr;Parent=Msa0654450-mRNA-1
chr4_3 three_prime_UTR 62623179 62623622 62623179 ID=Msa0654450-mRNA-1:three_prime_utr;Parent=Msa0654450-mRNA-1
Gene Sequence

>Msa0654450

ATGAAACATTCGGAGCAATATGGATTGCGTTGCCGGCACGTGTTTGTTTCCGTTACATCGTTGCAAAACGATTCACCTTGTGAGACACGCTCAAGGGATCCACAATGTGGAAGGAGACAAAAACTACAAAGCGTTGATAATCTGCGTAAACATGTTCGTTCCTCTGGATTAATTAACAAGATCGATCTCGTCATCGCTTCTCCTTTGATGAGGACTTTGCAAACAGCTGTTGGGGTATTTGGTGGGGAGGGATACACTGATGATAAAACGGATGTGCTGCCTCTTATGGTGGCAAATGCAGGAAATAGCTTCCGTGGTGCAATTTCAAGTCATAATTGCCCACCAATTGTTGCTGGCGAACTTTGCCGTGAACATTTGGGAGTTCATCCCTGTGACAAAAGAAGAAGTGTTAGTGAGTATCAGTTCCTTTTTCCTGCTGTTGATTTTTCACTGGCAAGTGCTTATACTTCAAGTGCCTGA
Protein sequence

>Msa0654450

MKHSEQYGLRCRHVFVSVTSLQNDSPCETRSRDPQCGRRQKLQSVDNLRKHVRSSGLINKIDLVIASPLMRTLQTAVGVFGGEGYTDDKTDVLPLMVANAGNSFRGAISSHNCPPIVAGELCREHLGVHPCDKRRSVSEYQFLFPAVDFSLASAYTSSA*