AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0696810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696810 MtrunA17_Chr4g0049431 95.455 110 5 0 42 151 54 163 1.71e-73 221
Msa0696810 MtrunA17_Chr3g0141101 68.182 110 34 1 42 151 105 213 1.34e-46 154
Msa0696810 MtrunA17_Chr5g0428091 61.818 110 41 1 42 151 92 200 1.59e-43 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696810 AT5G64460.11 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0696810 AT5G64460.7 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0696810 AT5G64460.9 76.923 117 22 2 35 151 12 123 9.37e-59 183
Msa0696810 AT5G64460.4 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.6 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.10 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.2 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.1 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.8 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.3 76.923 117 22 2 35 151 51 162 4.67e-58 182
Msa0696810 AT5G64460.5 82.927 82 13 1 70 151 1 81 6.99e-45 146
Msa0696810 AT2G17280.1 64.545 110 38 1 42 151 53 161 1.04e-44 148
Msa0696810 AT2G17280.2 64.545 110 38 1 42 151 53 161 1.04e-44 148
Msa0696810 AT1G58280.3 63.636 110 39 1 42 151 81 189 9.11e-43 144
Msa0696810 AT1G58280.1 63.636 110 39 1 42 151 96 204 1.21e-42 144
Msa0696810 AT1G58280.4 63.636 110 39 1 42 151 80 188 2.39e-42 143
Msa0696810 AT1G58280.2 51.852 135 39 2 42 151 96 229 6.16e-37 130
Msa0696810 AT1G09932.3 38.053 113 55 1 42 154 55 152 2.49e-24 94.7
Msa0696810 AT1G09932.2 38.053 113 55 1 42 154 48 145 3.97e-24 94.7
Msa0696810 AT1G09932.1 39.823 113 53 2 42 154 55 152 4.62e-24 94.7
Msa0696810 AT1G09935.1 46.296 108 37 1 43 150 52 138 7.21e-24 93.6
Msa0696810 AT1G09935.2 46.296 108 37 1 43 150 52 138 8.58e-24 93.2
Msa0696810 AT1G09932.4 40.000 85 36 2 42 126 55 124 5.37e-13 64.7

Find 93 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTTACATTCTTTAATT+TGG 0.067571 4_4:+66813549 Msa0696810:three_prime_UTR
CAAACAGCTGTTGGGGTATT+TGG 0.191261 4_4:+66811117 Msa0696810:CDS
GTATCTGCTAGAAATATTTA+TGG 0.196615 4_4:+66814074 Msa0696810:three_prime_UTR
AAGTAAATGATTGACTTATT+TGG 0.201148 4_4:+66813652 Msa0696810:three_prime_UTR
TCATTTCTTTCGCTGTATTA+AGG 0.223875 4_4:+66812164 Msa0696810:three_prime_UTR
TCAGCAGTTCAATGTTTAAA+TGG 0.252832 4_4:-66813956 None:intergenic
TGCTTTACATTCTTTAATTT+GGG 0.265831 4_4:+66813550 Msa0696810:three_prime_UTR
AGCAATATGGATTGCGTTGC+CGG 0.270338 4_4:+66808569 Msa0696810:CDS
TTTCACACTCTAACTACATT+TGG 0.307340 4_4:+66813375 Msa0696810:three_prime_UTR
CGAACTTTGCCGTGAACATT+TGG 0.328841 4_4:+66811254 Msa0696810:CDS
TTTCCCATCAGCAAAGAAAA+AGG 0.343182 4_4:-66814180 None:intergenic
AACGGATGTGCTGCCTCTTA+TGG 0.353393 4_4:+66811164 Msa0696810:CDS
CGTAAACATGTTCGTTCCTC+TGG 0.353503 4_4:+66808755 Msa0696810:CDS
GGATGAAAATGTCGAGAAAC+AGG 0.364230 4_4:+66813900 Msa0696810:three_prime_UTR
CCTGCATTTGCCACCATAAG+AGG 0.370940 4_4:-66811177 None:intergenic
ATCATAAACCACAAGCATTC+AGG 0.374223 4_4:-66812115 None:intergenic
TGTTTAACACCAACAGTTGC+AGG 0.387496 4_4:-66813581 None:intergenic
AAAAGGATGTTTGACGGCAC+TGG 0.405588 4_4:-66814163 None:intergenic
GGACTTTGCAAACAGCTGTT+GGG 0.407826 4_4:+66811109 Msa0696810:intron
TGACGACGAATCTGACTTAG+AGG 0.415759 4_4:+66813604 Msa0696810:three_prime_UTR
AGCATCAACAACTAACTATC+CGG 0.418415 4_4:+66813837 Msa0696810:three_prime_UTR
AAAGGAGGAACTGGCAGCTA+GGG 0.425635 4_4:+66812295 Msa0696810:three_prime_UTR
TATCCGGGCAAGATACCTTC+AGG 0.427271 4_4:+66813853 Msa0696810:three_prime_UTR
AATTGCCCACCAATTGTTGC+TGG 0.429050 4_4:+66811231 Msa0696810:CDS
CAAAGTTCGCCAGCAACAAT+TGG 0.431400 4_4:-66811240 None:intergenic
TGTTGGGGTATTTGGTGGGG+AGG 0.433278 4_4:+66811125 Msa0696810:CDS
CAAAGGAGGAACTGGCAGCT+AGG 0.439691 4_4:+66812294 Msa0696810:three_prime_UTR
AGGACTTTGCAAACAGCTGT+TGG 0.439773 4_4:+66811108 Msa0696810:intron
GATATTTCTTTCTTCACCAA+GGG 0.440479 4_4:-66813411 None:intergenic
GGAGGAACTGGCAGCTAGGG+GGG 0.440908 4_4:+66812298 Msa0696810:three_prime_UTR
TTATCAGATTCGGAGCAATA+TGG 0.446312 4_4:+66808556 Msa0696810:intron
CCTCTTATGGTGGCAAATGC+AGG 0.448697 4_4:+66811177 Msa0696810:CDS
AGAGACTAATATAAACATAA+AGG 0.455758 4_4:-66812208 None:intergenic
AAGAGAGACAAAGGAGGAAC+TGG 0.456446 4_4:+66812286 Msa0696810:three_prime_UTR
CAGCTGTTGGGGTATTTGGT+GGG 0.460056 4_4:+66811121 Msa0696810:CDS
CATGGAGCGAAGCTCACAAT+TGG 0.460292 4_4:-66813693 None:intergenic
AAGTAAAATATAACTATGTA+AGG 0.469668 4_4:+66814114 Msa0696810:three_prime_UTR
GTTGGGGTATTTGGTGGGGA+GGG 0.478766 4_4:+66811126 Msa0696810:CDS
TATGTAAGGCAAGGCAAGGC+AGG 0.480838 4_4:+66814128 Msa0696810:three_prime_UTR
CAATTGTGAGCTTCGCTCCA+TGG 0.485079 4_4:+66813694 Msa0696810:three_prime_UTR
ACAGCTGTTGGGGTATTTGG+TGG 0.489900 4_4:+66811120 Msa0696810:CDS
GGATATTTCTTTCTTCACCA+AGG 0.490934 4_4:-66813412 None:intergenic
GGATAATGTAAGAGAGACAA+AGG 0.493248 4_4:+66812277 Msa0696810:three_prime_UTR
TAGACAGTGATGAGGATGTT+TGG 0.508871 4_4:+66812249 Msa0696810:three_prime_UTR
CTAGGCTTGTCCAGCCCTGA+AGG 0.512267 4_4:-66813868 None:intergenic
GGGCAAGATACCTTCAGGGC+TGG 0.518060 4_4:+66813858 Msa0696810:three_prime_UTR
TCCAATTAATACCTCATCAA+AGG 0.521069 4_4:-66808812 None:intergenic
CACAATTGGCAAAGCTGCAA+AGG 0.521452 4_4:-66813679 None:intergenic
AAAGGATGTTTGACGGCACT+GGG 0.530771 4_4:-66814162 None:intergenic
GGGATACACTGATGATAAAA+CGG 0.532332 4_4:+66811146 Msa0696810:CDS
TAAAGGCAACAGTTAAATGT+TGG 0.535194 4_4:-66812191 None:intergenic
AGCCCTGAAGGTATCTTGCC+CGG 0.535829 4_4:-66813856 None:intergenic
ATTTGCGTACCAAATGTTCA+CGG 0.540428 4_4:-66811263 None:intergenic
AGTTCGCCAGCAACAATTGG+TGG 0.541305 4_4:-66811237 None:intergenic
TGGAAATGATTGCCACCCCT+TGG 0.547988 4_4:+66813395 Msa0696810:three_prime_UTR
ATCCGGGCAAGATACCTTCA+GGG 0.554632 4_4:+66813854 Msa0696810:three_prime_UTR
TTCAAGTGCCTGAATGCTTG+TGG 0.559192 4_4:+66812107 Msa0696810:exon
ATGAAAATGTCGAGAAACAG+GGG 0.561938 4_4:+66813902 Msa0696810:three_prime_UTR
TCCCTTGAGCGTGTCTCACA+AGG 0.562690 4_4:-66808631 None:intergenic
GATCAAGTTCCTGCAACTGT+TGG 0.564864 4_4:+66813572 Msa0696810:three_prime_UTR
AGCTGTTGGGGTATTTGGTG+GGG 0.570094 4_4:+66811122 Msa0696810:CDS
GCTTCGCTCCATGGTCCTTG+TGG 0.578334 4_4:+66813703 Msa0696810:three_prime_UTR
TAACGGAAACAAACACGTGC+CGG 0.579296 4_4:-66808588 None:intergenic
CAAGGGATCCACAATGTGGA+AGG 0.581062 4_4:+66808647 Msa0696810:CDS
CTTTCTATCCACAAGGACCA+TGG 0.586011 4_4:-66813711 None:intergenic
ACAGTGATGAGGATGTTTGG+TGG 0.587514 4_4:+66812252 Msa0696810:three_prime_UTR
GCATCAACAACTAACTATCC+GGG 0.587893 4_4:+66813838 Msa0696810:three_prime_UTR
GACTTTGCAAACAGCTGTTG+GGG 0.588956 4_4:+66811110 Msa0696810:CDS
AAATATAACTATGTAAGGCA+AGG 0.591426 4_4:+66814119 Msa0696810:three_prime_UTR
GGACAAGCCTAGTGATGCTG+TGG 0.593967 4_4:+66813879 Msa0696810:three_prime_UTR
TCATCGCTTCTCCTTTGATG+AGG 0.598983 4_4:+66808801 Msa0696810:CDS
TAACTATGTAAGGCAAGGCA+AGG 0.600112 4_4:+66814124 Msa0696810:three_prime_UTR
CACCTTGTGAGACACGCTCA+AGG 0.601658 4_4:+66808629 Msa0696810:CDS
AGGAGGAACTGGCAGCTAGG+GGG 0.601826 4_4:+66812297 Msa0696810:three_prime_UTR
GATGAAAATGTCGAGAAACA+GGG 0.608952 4_4:+66813901 Msa0696810:three_prime_UTR
GATACTAAATGTTAGCTGCA+AGG 0.613373 4_4:-66814056 None:intergenic
TTTCTTTCTTCACCAAGGGG+TGG 0.614051 4_4:-66813407 None:intergenic
AAGGAGGAACTGGCAGCTAG+GGG 0.614949 4_4:+66812296 Msa0696810:three_prime_UTR
TGATGAGGATGTTTGGTGGA+AGG 0.616744 4_4:+66812256 Msa0696810:three_prime_UTR
GATCTTGTTAATTAATCCAG+AGG 0.617260 4_4:-66808771 None:intergenic
AATGCAGGAAATAGCTTCCG+TGG 0.617766 4_4:+66811192 Msa0696810:CDS
ACCTTGTGAGACACGCTCAA+GGG 0.620665 4_4:+66808630 Msa0696810:CDS
ATATTTCTTTCTTCACCAAG+GGG 0.623337 4_4:-66813410 None:intergenic
GTTCGCCAGCAACAATTGGT+GGG 0.629718 4_4:-66811236 None:intergenic
ATACTCACTTTCTATCCACA+AGG 0.636262 4_4:-66813718 None:intergenic
CGCTCAAGGGATCCACAATG+TGG 0.645094 4_4:+66808643 Msa0696810:CDS
GGATGTGCTGCCTCTTATGG+TGG 0.662408 4_4:+66811167 Msa0696810:CDS
GTTTCAGATAGACAGTGATG+AGG 0.665843 4_4:+66812241 Msa0696810:three_prime_UTR
TAATGTAAGAGAGACAAAGG+AGG 0.671000 4_4:+66812280 Msa0696810:three_prime_UTR
GACGACGAATCTGACTTAGA+GGG 0.673741 4_4:+66813605 Msa0696810:three_prime_UTR
ATAGCGATTGTGACACACAG+TGG 0.725382 4_4:+66813345 Msa0696810:three_prime_UTR
TGAAAATGTCGAGAAACAGG+GGG 0.746521 4_4:+66813903 Msa0696810:three_prime_UTR
TATGACTTGAAATTGCACCA+CGG 0.752320 4_4:-66811209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr4_4:66809083-66809102 Msa0696810:intron 0.0%
!!! TATTATTTTCCATATTTAAA+TGG - chr4_4:66810852-66810871 None:intergenic 10.0%
!!! TAATTGTTTCATATATATTT+TGG + chr4_4:66811081-66811100 Msa0696810:intron 10.0%
!! TGTATATAAATTAGTAATAA+AGG + chr4_4:66811824-66811843 Msa0696810:intron 10.0%
!! AAATTATTAATGATATATGT+TGG - chr4_4:66812421-66812440 None:intergenic 10.0%
!!! TTTTTTTTTTTCAATCAACA+TGG - chr4_4:66809836-66809855 None:intergenic 15.0%
!! TGATTGAAAAAAAAAAAGAA+AGG + chr4_4:66809839-66809858 Msa0696810:intron 15.0%
!!! TATTTTTCATATTAAAATGG+TGG - chr4_4:66810046-66810065 None:intergenic 15.0%
!! ACATTAAATGAAAAATATGA+TGG - chr4_4:66810448-66810467 None:intergenic 15.0%
!!! GTTTGAATTTTATGAAAATA+TGG + chr4_4:66810468-66810487 Msa0696810:intron 15.0%
!! AAATTAGTAATAAAGGAAAA+AGG + chr4_4:66811831-66811850 Msa0696810:intron 15.0%
!!! TTGAAATTTTCATTTTCAAA+CGG + chr4_4:66812450-66812469 Msa0696810:intron 15.0%
!! AATAAAGTAATGTAAAATAG+GGG - chr4_4:66812661-66812680 None:intergenic 15.0%
!! GAATAAAGTAATGTAAAATA+GGG - chr4_4:66812662-66812681 None:intergenic 15.0%
!!! TTAGAGTTTATATTTTGAAA+GGG - chr4_4:66813763-66813782 None:intergenic 15.0%
!!! ATTAGAGTTTATATTTTGAA+AGG - chr4_4:66813764-66813783 None:intergenic 15.0%
!!! TTACATAGTTATATTTTACT+TGG - chr4_4:66814115-66814134 None:intergenic 15.0%
!! AAGTAAAATATAACTATGTA+AGG + chr4_4:66814114-66814133 Msa0696810:three_prime_UTR 15.0%
!!! AGCCTATTTTTCATTTAATT+GGG + chr4_4:66808994-66809013 Msa0696810:intron 20.0%
!! TAGAAATAAAAAACACAACA+AGG - chr4_4:66810174-66810193 None:intergenic 20.0%
!!! TTTAATTTGAAAGTTGACTT+TGG + chr4_4:66810326-66810345 Msa0696810:intron 20.0%
!! TTGAATGAAAAAGAAAGAAA+AGG + chr4_4:66810642-66810661 Msa0696810:intron 20.0%
!!! ATTTTCCATATTTAAATGGT+GGG - chr4_4:66810848-66810867 None:intergenic 20.0%
!!! TATTTTCCATATTTAAATGG+TGG - chr4_4:66810849-66810868 None:intergenic 20.0%
!! AAAACTAGATTGAAAAAACA+AGG - chr4_4:66810889-66810908 None:intergenic 20.0%
!! AGGAAATAAAAAATACAACA+GGG - chr4_4:66810971-66810990 None:intergenic 20.0%
!!! TTTTGCTATCAAATTCTTTT+GGG - chr4_4:66811555-66811574 None:intergenic 20.0%
!!! ATTTTGCTATCAAATTCTTT+TGG - chr4_4:66811556-66811575 None:intergenic 20.0%
!!! TTGATATTAACATTGACTTA+TGG + chr4_4:66811954-66811973 Msa0696810:intron 20.0%
!! AGAGACTAATATAAACATAA+AGG - chr4_4:66812211-66812230 None:intergenic 20.0%
!! GGAATAAAGTAATGTAAAAT+AGG - chr4_4:66812663-66812682 None:intergenic 20.0%
!! GATTATTAGAACTGATATAT+TGG + chr4_4:66813178-66813197 Msa0696810:intron 20.0%
!!! TGCTTTACATTCTTTAATTT+GGG + chr4_4:66813550-66813569 Msa0696810:three_prime_UTR 20.0%
!!! AAGTAAATGATTGACTTATT+TGG + chr4_4:66813652-66813671 Msa0696810:three_prime_UTR 20.0%
!!! CAGCCTATTTTTCATTTAAT+TGG + chr4_4:66808993-66809012 Msa0696810:intron 25.0%
!!! TTTTTTTTTAACTCGGTATC+CGG - chr4_4:66809072-66809091 None:intergenic 25.0%
! TATTCCAATCTACTAATGAA+GGG - chr4_4:66809147-66809166 None:intergenic 25.0%
! ATATTCCAATCTACTAATGA+AGG - chr4_4:66809148-66809167 None:intergenic 25.0%
! CAATTTAGTAACAGAAATTG+TGG - chr4_4:66809316-66809335 None:intergenic 25.0%
! ACAAACTAACATACTAACAT+TGG - chr4_4:66809416-66809435 None:intergenic 25.0%
! TAAGTACATGTTAACATTGT+GGG - chr4_4:66809532-66809551 None:intergenic 25.0%
! TTAAGTACATGTTAACATTG+TGG - chr4_4:66809533-66809552 None:intergenic 25.0%
!!! GTAAACAACATTGTTACTTT+GGG - chr4_4:66809687-66809706 None:intergenic 25.0%
!! AGTAAACAACATTGTTACTT+TGG - chr4_4:66809688-66809707 None:intergenic 25.0%
! TAACGTGTATTATACAAGAT+TGG - chr4_4:66809732-66809751 None:intergenic 25.0%
! GGAAAATGAAAGATGTTAAT+AGG - chr4_4:66810025-66810044 None:intergenic 25.0%
! ATAAAAAACACAACAAGGAT+AGG - chr4_4:66810169-66810188 None:intergenic 25.0%
! CATCTAAATTCCAATTAGTT+TGG - chr4_4:66810409-66810428 None:intergenic 25.0%
! TCAAAAGTTAGTCATTTCAA+TGG + chr4_4:66810499-66810518 Msa0696810:intron 25.0%
! TTTAGCATTTCAAATTAACC+AGG + chr4_4:66809815-66809834 Msa0696810:intron 25.0%
!! TGATGCTTAATCATTACTTT+TGG - chr4_4:66810735-66810754 None:intergenic 25.0%
!! TAGGAAAAATATAGAAGTGT+AGG - chr4_4:66810809-66810828 None:intergenic 25.0%
!!! ATCTAGTTTTAACAAGAGAA+AGG + chr4_4:66810899-66810918 Msa0696810:intron 25.0%
! GAGGAAATAAAAAATACAAC+AGG - chr4_4:66810972-66810991 None:intergenic 25.0%
!!! GTTGTATTTTTTATTTCCTC+AGG + chr4_4:66810972-66810991 Msa0696810:intron 25.0%
! TATTTCCTCAGGATTAAATT+TGG + chr4_4:66810983-66811002 Msa0696810:intron 25.0%
! ATTTCCTCAGGATTAAATTT+GGG + chr4_4:66810984-66811003 Msa0696810:intron 25.0%
!!! TTCATATATATTTTGGCTTC+AGG + chr4_4:66811088-66811107 Msa0696810:intron 25.0%
!!! GAACATATTTTTACCTGTTT+CGG + chr4_4:66811295-66811314 Msa0696810:intron 25.0%
! TATCTTGACAGTTAAAAGAT+TGG - chr4_4:66811408-66811427 None:intergenic 25.0%
!!! CGGTACTTTTAAGTTTTAAA+TGG - chr4_4:66811658-66811677 None:intergenic 25.0%
! ATCTACTATGAATAATCAGT+AGG + chr4_4:66811691-66811710 Msa0696810:intron 25.0%
!! TGACAATAAATTTAAAGCTC+AGG + chr4_4:66811801-66811820 Msa0696810:intron 25.0%
!! ACTTCTGTTAATTTTGTAGT+TGG - chr4_4:66811901-66811920 None:intergenic 25.0%
! TTTATCTTCTATGAGCAAAT+AGG + chr4_4:66811920-66811939 Msa0696810:intron 25.0%
! TTATCTTCTATGAGCAAATA+GGG + chr4_4:66811921-66811940 Msa0696810:intron 25.0%
! CAATGTTAATATCAAGACTA+AGG - chr4_4:66811949-66811968 None:intergenic 25.0%
!!! TTAACATTGACTTATGGATA+TGG + chr4_4:66811960-66811979 Msa0696810:intron 25.0%
! AAAATGTGGAGAAAATTGTA+AGG - chr4_4:66811987-66812006 None:intergenic 25.0%
! AAAAATAACAACGAAAAAGC+TGG + chr4_4:66812505-66812524 Msa0696810:intron 25.0%
!! GTGAAATATCAATTTTGTGT+TGG - chr4_4:66812785-66812804 None:intergenic 25.0%
! AAATTATCTTCCACCATTAT+TGG - chr4_4:66813031-66813050 None:intergenic 25.0%
! TGAAGATTCATGTAGTTATA+TGG + chr4_4:66813234-66813253 Msa0696810:intron 25.0%
!!! AAGCAATAGAATCTTTTTTC+TGG - chr4_4:66813260-66813279 None:intergenic 25.0%
! GTGCTTTACATTCTTTAATT+TGG + chr4_4:66813549-66813568 Msa0696810:three_prime_UTR 25.0%
! GTATCTGCTAGAAATATTTA+TGG + chr4_4:66814074-66814093 Msa0696810:three_prime_UTR 25.0%
! AAATATAACTATGTAAGGCA+AGG + chr4_4:66814119-66814138 Msa0696810:three_prime_UTR 25.0%
AACGTGAGTTTAATGGAAAA+TGG + chr4_4:66808248-66808267 Msa0696810:intron 30.0%
! CAACTTGTTTCTTTGTTACT+CGG - chr4_4:66808282-66808301 None:intergenic 30.0%
AAGTATAACAGACTTGAAGA+AGG - chr4_4:66808502-66808521 None:intergenic 30.0%
AGATGAGCATCAAAATAATC+AGG - chr4_4:66808701-66808720 None:intergenic 30.0%
GATCTTGTTAATTAATCCAG+AGG - chr4_4:66808774-66808793 None:intergenic 30.0%
! TCCTTTGATGAGGTATTAAT+TGG + chr4_4:66808811-66808830 Msa0696810:intron 30.0%
TCCAATTAATACCTCATCAA+AGG - chr4_4:66808815-66808834 None:intergenic 30.0%
GGCCCAATTAAATGAAAAAT+AGG - chr4_4:66808999-66809018 None:intergenic 30.0%
AAGGTTATATGAAATGTGTG+TGG + chr4_4:66809106-66809125 Msa0696810:intron 30.0%
TATTCCCTTCATTAGTAGAT+TGG + chr4_4:66809140-66809159 Msa0696810:intron 30.0%
GCGAAAAATTTCAATGCTTA+CGG - chr4_4:66809253-66809272 None:intergenic 30.0%
!! AATTTTTCGCAGTCATTTTC+CGG + chr4_4:66809263-66809282 Msa0696810:intron 30.0%
ACTGTTTAGCAATTTCATGT+AGG + chr4_4:66809341-66809360 Msa0696810:intron 30.0%
!! GTTAGTTTGTTAGTAGTTGT+TGG + chr4_4:66809426-66809445 Msa0696810:intron 30.0%
TGTACTTAACATCTCATATC+TGG + chr4_4:66809544-66809563 Msa0696810:intron 30.0%
ATTACTTTCGGCAACAAAAA+GGG - chr4_4:66809920-66809939 None:intergenic 30.0%
TGATGCTTGATCATTACTTT+CGG - chr4_4:66809932-66809951 None:intergenic 30.0%
TTACTGTTGTTCTTTCCATA+CGG + chr4_4:66809962-66809981 Msa0696810:intron 30.0%
! TAGGAAAAGAATAGAAGTGT+AGG - chr4_4:66810006-66810025 None:intergenic 30.0%
! TCTAGTCTTTAACAAGAGAA+AGG + chr4_4:66810097-66810116 Msa0696810:intron 30.0%
! TCTGCAATCAACATTTTTGT+AGG + chr4_4:66810129-66810148 Msa0696810:intron 30.0%
AGCGAGTAATACAAAAACAT+AGG - chr4_4:66810237-66810256 None:intergenic 30.0%
GGAACATATTCCAAACTAAT+TGG + chr4_4:66810396-66810415 Msa0696810:intron 30.0%
TTAGTCATTTCAATGGTTGA+CGG + chr4_4:66810506-66810525 Msa0696810:intron 30.0%
!! TCTTTCTTTTTCATTCAACC+TGG - chr4_4:66810640-66810659 None:intergenic 30.0%
!! ATTACTTTTGGCAGCAAAAA+GGG - chr4_4:66810723-66810742 None:intergenic 30.0%
CATTTCCCACCATTTAAATA+TGG + chr4_4:66810840-66810859 Msa0696810:intron 30.0%
AATAAATCTTGAGTACCTTC+AGG - chr4_4:66811012-66811031 None:intergenic 30.0%
! ATAATTTTGTAACTGCGTTG+AGG + chr4_4:66811044-66811063 Msa0696810:intron 30.0%
GTCAATTAACTGTGAATTAC+AGG - chr4_4:66811523-66811542 None:intergenic 30.0%
GTAATTCACAGTTAATTGAC+CGG + chr4_4:66811523-66811542 Msa0696810:intron 30.0%
TAATTCACAGTTAATTGACC+GGG + chr4_4:66811524-66811543 Msa0696810:intron 30.0%
!!! AAATTCTTTTGGGTTTATCC+CGG - chr4_4:66811545-66811564 None:intergenic 30.0%
ACTATGAATAATCAGTAGGA+TGG + chr4_4:66811695-66811714 Msa0696810:intron 30.0%
!! CAGTATCGAACAAATTTTAC+AGG + chr4_4:66811738-66811757 Msa0696810:intron 30.0%
AAAAATCAACAGCAGGAAAA+AGG - chr4_4:66812068-66812087 None:intergenic 30.0%
TCATTTCTTTCGCTGTATTA+AGG + chr4_4:66812164-66812183 Msa0696810:three_prime_UTR 30.0%
TAAAGGCAACAGTTAAATGT+TGG - chr4_4:66812194-66812213 None:intergenic 30.0%
AAGTGTATACTATCACTCTT+TGG + chr4_4:66812615-66812634 Msa0696810:intron 30.0%
CATGTGAGAAACACTAAAAT+TGG + chr4_4:66812699-66812718 Msa0696810:intron 30.0%
!!! TACATATTGGCTGTTGATTT+TGG - chr4_4:66812873-66812892 None:intergenic 30.0%
TTGGAAAGAGTCATACATAT+TGG - chr4_4:66812886-66812905 None:intergenic 30.0%
TTGCTATATCTAGTAAGCTT+GGG - chr4_4:66812965-66812984 None:intergenic 30.0%
TACTCTATTGTGACCAATAA+TGG + chr4_4:66813015-66813034 Msa0696810:intron 30.0%
CAAGCCATCGTTTAATTATT+GGG + chr4_4:66813082-66813101 Msa0696810:intron 30.0%
AAGCCATCGTTTAATTATTG+GGG + chr4_4:66813083-66813102 Msa0696810:intron 30.0%
TTTCACACTCTAACTACATT+TGG + chr4_4:66813375-66813394 Msa0696810:three_prime_UTR 30.0%
ATATTTCTTTCTTCACCAAG+GGG - chr4_4:66813413-66813432 None:intergenic 30.0%
GATATTTCTTTCTTCACCAA+GGG - chr4_4:66813414-66813433 None:intergenic 30.0%
TCAGCAGTTCAATGTTTAAA+TGG - chr4_4:66813959-66813978 None:intergenic 30.0%
CAAAGAAAAAGGATGTTTGA+CGG - chr4_4:66814172-66814191 None:intergenic 30.0%
GTAACGTAACGTGAGTTTAA+TGG + chr4_4:66808241-66808260 Msa0696810:intron 35.0%
TCTGATAAACACAGAGTCAA+CGG - chr4_4:66808544-66808563 None:intergenic 35.0%
GACTCTGTGTTTATCAGATT+CGG + chr4_4:66808546-66808565 Msa0696810:intron 35.0%
TTATCAGATTCGGAGCAATA+TGG + chr4_4:66808556-66808575 Msa0696810:intron 35.0%
! ATCGTTTTGCAACGATGTAA+CGG - chr4_4:66808608-66808627 None:intergenic 35.0%
CAAAGCAATGATGTCAAACA+AGG - chr4_4:66809226-66809245 None:intergenic 35.0%
!! AGTTTGTTAGTAGTTGTTGG+AGG + chr4_4:66809429-66809448 Msa0696810:intron 35.0%
AGTGGAGTGATAACTGATAA+GGG - chr4_4:66809476-66809495 None:intergenic 35.0%
TGTTAACATTGTGGGATGTA+GGG - chr4_4:66809524-66809543 None:intergenic 35.0%
ATGTTAACATTGTGGGATGT+AGG - chr4_4:66809525-66809544 None:intergenic 35.0%
CATTACTTTCGGCAACAAAA+AGG - chr4_4:66809921-66809940 None:intergenic 35.0%
GTTTATGTTACATTGTCGTG+TGG + chr4_4:66810195-66810214 Msa0696810:intron 35.0%
!! CATTACTTTTGGCAGCAAAA+AGG - chr4_4:66810724-66810743 None:intergenic 35.0%
TTACCGTTCTTCTATCCATA+CGG + chr4_4:66810765-66810784 Msa0696810:intron 35.0%
TAACCGTATGGATAGAAGAA+CGG - chr4_4:66810771-66810790 None:intergenic 35.0%
ATACGAATGCAATAACCGTA+TGG - chr4_4:66810783-66810802 None:intergenic 35.0%
GGGAAATGAAAGATGGTAAT+AGG - chr4_4:66810828-66810847 None:intergenic 35.0%
! AAATGGTGGGAAATGAAAGA+TGG - chr4_4:66810835-66810854 None:intergenic 35.0%
! GATTAAATTTGGGATCCTGA+AGG + chr4_4:66810994-66811013 Msa0696810:intron 35.0%
GGGATACACTGATGATAAAA+CGG + chr4_4:66811146-66811165 Msa0696810:CDS 35.0%
TATGACTTGAAATTGCACCA+CGG - chr4_4:66811212-66811231 None:intergenic 35.0%
ATTTGCGTACCAAATGTTCA+CGG - chr4_4:66811266-66811285 None:intergenic 35.0%
AACAAGTTCAATCCTCATCT+TGG + chr4_4:66811355-66811374 Msa0696810:intron 35.0%
ACAAGTTCAATCCTCATCTT+GGG + chr4_4:66811356-66811375 Msa0696810:intron 35.0%
CTGAAAAGTAAGATTGCAAC+TGG - chr4_4:66811449-66811468 None:intergenic 35.0%
!! CAGTTGCAATCTTACTTTTC+AGG + chr4_4:66811447-66811466 Msa0696810:intron 35.0%
!! TTGCAATCTTACTTTTCAGG+AGG + chr4_4:66811450-66811469 Msa0696810:intron 35.0%
!! TCTTACTTTTCAGGAGGATT+AGG + chr4_4:66811456-66811475 Msa0696810:intron 35.0%
!! CTTACTTTTCAGGAGGATTA+GGG + chr4_4:66811457-66811476 Msa0696810:intron 35.0%
!! TTACTTTTCAGGAGGATTAG+GGG + chr4_4:66811458-66811477 Msa0696810:intron 35.0%
!! TTAAAAGTACCGTGCATCAT+AGG + chr4_4:66811666-66811685 Msa0696810:intron 35.0%
!! TAAAAGTACCGTGCATCATA+GGG + chr4_4:66811667-66811686 Msa0696810:intron 35.0%
! ACACTTCTTCTTTTGTCACA+GGG - chr4_4:66812030-66812049 None:intergenic 35.0%
! AACACTTCTTCTTTTGTCAC+AGG - chr4_4:66812031-66812050 None:intergenic 35.0%
ATCATAAACCACAAGCATTC+AGG - chr4_4:66812118-66812137 None:intergenic 35.0%
GGATAATGTAAGAGAGACAA+AGG + chr4_4:66812277-66812296 Msa0696810:three_prime_UTR 35.0%
TAATGTAAGAGAGACAAAGG+AGG + chr4_4:66812280-66812299 Msa0696810:three_prime_UTR 35.0%
CTTTAACATTTGGAGGTTTC+TGG - chr4_4:66812356-66812375 None:intergenic 35.0%
CAGAAACCTCCAAATGTTAA+AGG + chr4_4:66812354-66812373 Msa0696810:intron 35.0%
AAACCTCCAAATGTTAAAGG+TGG + chr4_4:66812357-66812376 Msa0696810:intron 35.0%
TATCACTCTTTGGTTGTTTG+TGG + chr4_4:66812625-66812644 Msa0696810:intron 35.0%
ATCACTCTTTGGTTGTTTGT+GGG + chr4_4:66812626-66812645 Msa0696810:intron 35.0%
TCTCACATGCAGTATTAACA+GGG - chr4_4:66812688-66812707 None:intergenic 35.0%
TTCTCACATGCAGTATTAAC+AGG - chr4_4:66812689-66812708 None:intergenic 35.0%
GGATGAGATCTTATACAATC+AGG - chr4_4:66812764-66812783 None:intergenic 35.0%
!!! GTTGATTTTGGTTGGATTGT+GGG - chr4_4:66812861-66812880 None:intergenic 35.0%
!!! TGTTGATTTTGGTTGGATTG+TGG - chr4_4:66812862-66812881 None:intergenic 35.0%
!!! TATTGGCTGTTGATTTTGGT+TGG - chr4_4:66812869-66812888 None:intergenic 35.0%
TATGTATGACTCTTTCCAAC+AGG + chr4_4:66812887-66812906 Msa0696810:intron 35.0%
! CTTGCTATATCTAGTAAGCT+TGG - chr4_4:66812966-66812985 None:intergenic 35.0%
TCTATTGTGACCAATAATGG+TGG + chr4_4:66813018-66813037 Msa0696810:intron 35.0%
GCAAGCCATCGTTTAATTAT+TGG + chr4_4:66813081-66813100 Msa0696810:intron 35.0%
AGCCATCGTTTAATTATTGG+GGG + chr4_4:66813084-66813103 Msa0696810:intron 35.0%
!! TCTGTTTTTCACTTGAACTC+AGG + chr4_4:66813298-66813317 Msa0696810:intron 35.0%
GGATATTTCTTTCTTCACCA+AGG - chr4_4:66813415-66813434 None:intergenic 35.0%
CGAAACACAAATTACTAGGT+CGG - chr4_4:66813467-66813486 None:intergenic 35.0%
GAAGCGAAACACAAATTACT+AGG - chr4_4:66813471-66813490 None:intergenic 35.0%
ATACTCACTTTCTATCCACA+AGG - chr4_4:66813721-66813740 None:intergenic 35.0%
! TGCTTTTCGTTCAGTATGAT+AGG + chr4_4:66813808-66813827 Msa0696810:intron 35.0%
AGCATCAACAACTAACTATC+CGG + chr4_4:66813837-66813856 Msa0696810:three_prime_UTR 35.0%
GATGAAAATGTCGAGAAACA+GGG + chr4_4:66813901-66813920 Msa0696810:three_prime_UTR 35.0%
ATGAAAATGTCGAGAAACAG+GGG + chr4_4:66813902-66813921 Msa0696810:three_prime_UTR 35.0%
GATACTAAATGTTAGCTGCA+AGG - chr4_4:66814059-66814078 None:intergenic 35.0%
! ACATCCTTTTTCTTTGCTGA+TGG + chr4_4:66814176-66814195 Msa0696810:three_prime_UTR 35.0%
! CATCCTTTTTCTTTGCTGAT+GGG + chr4_4:66814177-66814196 Msa0696810:three_prime_UTR 35.0%
TTTCCCATCAGCAAAGAAAA+AGG - chr4_4:66814183-66814202 None:intergenic 35.0%
! TTGATACTTCTGAGAGAGAG+CGG - chr4_4:66808321-66808340 None:intergenic 40.0%
ACAGAGTCAACGGTTGAATT+AGG - chr4_4:66808534-66808553 None:intergenic 40.0%
! TTTTGTCTCCTTCCACATTG+TGG - chr4_4:66808658-66808677 None:intergenic 40.0%
GAGCAATACATAAACACAGG+AGG - chr4_4:66808903-66808922 None:intergenic 40.0%
GACGAGCAATACATAAACAC+AGG - chr4_4:66808906-66808925 None:intergenic 40.0%
TATGTATTGCTCGTCCTTTG+TGG + chr4_4:66808911-66808930 Msa0696810:intron 40.0%
AGTCTCACCGATCAATAGTA+GGG - chr4_4:66809022-66809041 None:intergenic 40.0%
! GACTGATTCCCTGAATTAGT+CGG + chr4_4:66809038-66809057 Msa0696810:intron 40.0%
TGTCAACTAGATTGCTTGCT+TGG + chr4_4:66809197-66809216 Msa0696810:intron 40.0%
ACGTCAAGACACATTTGTTC+CGG - chr4_4:66809285-66809304 None:intergenic 40.0%
GAGTGGAGTGATAACTGATA+AGG - chr4_4:66809477-66809496 None:intergenic 40.0%
TACTAACACCGTGAGTCATT+CGG + chr4_4:66809704-66809723 Msa0696810:intron 40.0%
ATACGAATGCAAGAACCGTA+TGG - chr4_4:66809980-66809999 None:intergenic 40.0%
CACGAGTAATGCATATGCAT+AGG - chr4_4:66810292-66810311 None:intergenic 40.0%
TATGCATTACTCGTGTTGTC+TGG + chr4_4:66810297-66810316 Msa0696810:intron 40.0%
TTGATCACGCTAGTAGTCTT+TGG + chr4_4:66810374-66810393 Msa0696810:intron 40.0%
TGATCACGCTAGTAGTCTTT+GGG + chr4_4:66810375-66810394 Msa0696810:intron 40.0%
TCAGTAATCGACGTTGTTGT+AGG + chr4_4:66810931-66810950 Msa0696810:intron 40.0%
CAGTAATCGACGTTGTTGTA+GGG + chr4_4:66810932-66810951 Msa0696810:intron 40.0%
AGTAATCGACGTTGTTGTAG+GGG + chr4_4:66810933-66810952 Msa0696810:intron 40.0%
GGATCCCAAATTTAATCCTG+AGG - chr4_4:66810991-66811010 None:intergenic 40.0%
CATAACTACTCTTCCGAAAC+AGG - chr4_4:66811311-66811330 None:intergenic 40.0%
ATACTTTCCCAGTCTGAGTA+TGG + chr4_4:66811629-66811648 Msa0696810:intron 40.0%
ATGGTTTCCATACTCAGACT+GGG - chr4_4:66811639-66811658 None:intergenic 40.0%
AATGGTTTCCATACTCAGAC+TGG - chr4_4:66811640-66811659 None:intergenic 40.0%
!! AAAAGTACCGTGCATCATAG+GGG + chr4_4:66811668-66811687 Msa0696810:intron 40.0%
! TCCACATTTTTCCTCATGCA+GGG + chr4_4:66811997-66812016 Msa0696810:intron 40.0%
!!! TCCTGCTGTTGATTTTTCAC+TGG + chr4_4:66812071-66812090 Msa0696810:CDS 40.0%
GTTTCAGATAGACAGTGATG+AGG + chr4_4:66812241-66812260 Msa0696810:three_prime_UTR 40.0%
TAGACAGTGATGAGGATGTT+TGG + chr4_4:66812249-66812268 Msa0696810:three_prime_UTR 40.0%
TTCTCGCCACCTTTAACATT+TGG - chr4_4:66812366-66812385 None:intergenic 40.0%
ACATGCAGTATTAACAGGGA+CGG - chr4_4:66812684-66812703 None:intergenic 40.0%
ATGGACGAAAGGAAGTAAAG+GGG - chr4_4:66812835-66812854 None:intergenic 40.0%
CATGGACGAAAGGAAGTAAA+GGG - chr4_4:66812836-66812855 None:intergenic 40.0%
ACATGGACGAAAGGAAGTAA+AGG - chr4_4:66812837-66812856 None:intergenic 40.0%
TATGACTCTTTCCAACAGGA+AGG + chr4_4:66812891-66812910 Msa0696810:intron 40.0%
ATGACTCTTTCCAACAGGAA+GGG + chr4_4:66812892-66812911 Msa0696810:intron 40.0%
GTCACAATAGAGTACAGCAA+AGG - chr4_4:66813009-66813028 None:intergenic 40.0%
GACCCCCAATAATTAAACGA+TGG - chr4_4:66813089-66813108 None:intergenic 40.0%
! TTTCACTTGAACTCAGGTTG+TGG + chr4_4:66813304-66813323 Msa0696810:intron 40.0%
AAATTACTAGGTCGGAGGAA+CGG - chr4_4:66813459-66813478 None:intergenic 40.0%
AACACAAATTACTAGGTCGG+AGG - chr4_4:66813464-66813483 None:intergenic 40.0%
! TTCGCTTCTCTTGTTATGTG+AGG + chr4_4:66813483-66813502 Msa0696810:intron 40.0%
TGTTTAACACCAACAGTTGC+AGG - chr4_4:66813584-66813603 None:intergenic 40.0%
GCATCAACAACTAACTATCC+GGG + chr4_4:66813838-66813857 Msa0696810:three_prime_UTR 40.0%
! TTTTCATCCACAGCATCACT+AGG - chr4_4:66813889-66813908 None:intergenic 40.0%
GGATGAAAATGTCGAGAAAC+AGG + chr4_4:66813900-66813919 Msa0696810:three_prime_UTR 40.0%
TGAAAATGTCGAGAAACAGG+GGG + chr4_4:66813903-66813922 Msa0696810:three_prime_UTR 40.0%
TAACTATGTAAGGCAAGGCA+AGG + chr4_4:66814124-66814143 Msa0696810:three_prime_UTR 40.0%
! TGATACTTCTGAGAGAGAGC+GGG - chr4_4:66808320-66808339 None:intergenic 45.0%
!! CTCAGAAGTATCAAGAGCGA+AGG + chr4_4:66808327-66808346 Msa0696810:intron 45.0%
GGGAACAGGAAGAATCTTTG+TGG - chr4_4:66808431-66808450 None:intergenic 45.0%
TAGCAGATCGAGAGAGAAAG+CGG - chr4_4:66808452-66808471 None:intergenic 45.0%
! AGCAATATGGATTGCGTTGC+CGG + chr4_4:66808569-66808588 Msa0696810:CDS 45.0%
TAACGGAAACAAACACGTGC+CGG - chr4_4:66808591-66808610 None:intergenic 45.0%
TCATCTCACTCCTCTTGGAT+GGG + chr4_4:66808715-66808734 Msa0696810:intron 45.0%
CGTAAACATGTTCGTTCCTC+TGG + chr4_4:66808755-66808774 Msa0696810:CDS 45.0%
TCATCGCTTCTCCTTTGATG+AGG + chr4_4:66808801-66808820 Msa0696810:CDS 45.0%
TATTGCTCGTCCTTTGTGGT+TGG + chr4_4:66808915-66808934 Msa0696810:intron 45.0%
TCAACTTGGACCAACCACAA+AGG - chr4_4:66808928-66808947 None:intergenic 45.0%
! TCCAAGTTGACTTTGCTGCA+TGG + chr4_4:66808938-66808957 Msa0696810:intron 45.0%
TCCATGCAGCAAAGTCAACT+TGG - chr4_4:66808942-66808961 None:intergenic 45.0%
TCTCACCGATCAATAGTAGG+GGG - chr4_4:66809020-66809039 None:intergenic 45.0%
GTCTCACCGATCAATAGTAG+GGG - chr4_4:66809021-66809040 None:intergenic 45.0%
CAGTCTCACCGATCAATAGT+AGG - chr4_4:66809023-66809042 None:intergenic 45.0%
CCTAAGAGCCGACTAATTCA+GGG - chr4_4:66809049-66809068 None:intergenic 45.0%
TAACTGATAAGGGTGGTCTC+AGG - chr4_4:66809466-66809485 None:intergenic 45.0%
GGAGTGATAACTGATAAGGG+TGG - chr4_4:66809473-66809492 None:intergenic 45.0%
! GATTGGTACCGAATGACTCA+CGG - chr4_4:66809715-66809734 None:intergenic 45.0%
AGGACTTTGCAAACAGCTGT+TGG + chr4_4:66811108-66811127 Msa0696810:intron 45.0%
GGACTTTGCAAACAGCTGTT+GGG + chr4_4:66811109-66811128 Msa0696810:intron 45.0%
GACTTTGCAAACAGCTGTTG+GGG + chr4_4:66811110-66811129 Msa0696810:CDS 45.0%
! CAAACAGCTGTTGGGGTATT+TGG + chr4_4:66811117-66811136 Msa0696810:CDS 45.0%
AATGCAGGAAATAGCTTCCG+TGG + chr4_4:66811192-66811211 Msa0696810:CDS 45.0%
AATTGCCCACCAATTGTTGC+TGG + chr4_4:66811231-66811250 Msa0696810:CDS 45.0%
CAAAGTTCGCCAGCAACAAT+TGG - chr4_4:66811243-66811262 None:intergenic 45.0%
CGAACTTTGCCGTGAACATT+TGG + chr4_4:66811254-66811273 Msa0696810:CDS 45.0%
AATCCTCATCTTGGGATGAC+AGG + chr4_4:66811364-66811383 Msa0696810:intron 45.0%
TAAGATTGCAACTGGTGTGC+AGG - chr4_4:66811441-66811460 None:intergenic 45.0%
! ACTGGGAAAGTATGAGGTAC+AGG - chr4_4:66811622-66811641 None:intergenic 45.0%
! ACTCAGACTGGGAAAGTATG+AGG - chr4_4:66811628-66811647 None:intergenic 45.0%
AGTAGATCCCCTATGATGCA+CGG - chr4_4:66811678-66811697 None:intergenic 45.0%
! CTCCACATTTTTCCTCATGC+AGG + chr4_4:66811996-66812015 Msa0696810:intron 45.0%
TCCCTGCATGAGGAAAAATG+TGG - chr4_4:66812001-66812020 None:intergenic 45.0%
GCCAGTGAAAAATCAACAGC+AGG - chr4_4:66812075-66812094 None:intergenic 45.0%
TTCAAGTGCCTGAATGCTTG+TGG + chr4_4:66812107-66812126 Msa0696810:exon 45.0%
ACAGTGATGAGGATGTTTGG+TGG + chr4_4:66812252-66812271 Msa0696810:three_prime_UTR 45.0%
! TGATGAGGATGTTTGGTGGA+AGG + chr4_4:66812256-66812275 Msa0696810:three_prime_UTR 45.0%
AAGAGAGACAAAGGAGGAAC+TGG + chr4_4:66812286-66812305 Msa0696810:three_prime_UTR 45.0%
TCGCCACCTTTAACATTTGG+AGG - chr4_4:66812363-66812382 None:intergenic 45.0%
TGGACGAAAGGAAGTAAAGG+GGG - chr4_4:66812834-66812853 None:intergenic 45.0%
ATTGTGGGAACATGGACGAA+AGG - chr4_4:66812846-66812865 None:intergenic 45.0%
TTGGTTGGATTGTGGGAACA+TGG - chr4_4:66812854-66812873 None:intergenic 45.0%
ATAGCGATTGTGACACACAG+TGG + chr4_4:66813345-66813364 Msa0696810:three_prime_UTR 45.0%
TTTCTTTCTTCACCAAGGGG+TGG - chr4_4:66813410-66813429 None:intergenic 45.0%
! GGTATTGAGAGCTTACTGCT+TGG - chr4_4:66813436-66813455 None:intergenic 45.0%
AATTACTAGGTCGGAGGAAC+GGG - chr4_4:66813458-66813477 None:intergenic 45.0%
GATCAAGTTCCTGCAACTGT+TGG + chr4_4:66813572-66813591 Msa0696810:three_prime_UTR 45.0%
TGACGACGAATCTGACTTAG+AGG + chr4_4:66813604-66813623 Msa0696810:three_prime_UTR 45.0%
GACGACGAATCTGACTTAGA+GGG + chr4_4:66813605-66813624 Msa0696810:three_prime_UTR 45.0%
CACAATTGGCAAAGCTGCAA+AGG - chr4_4:66813682-66813701 None:intergenic 45.0%
CTTTCTATCCACAAGGACCA+TGG - chr4_4:66813714-66813733 None:intergenic 45.0%
AAAGGATGTTTGACGGCACT+GGG - chr4_4:66814165-66814184 None:intergenic 45.0%
AAAAGGATGTTTGACGGCAC+TGG - chr4_4:66814166-66814185 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTAACT+CGG - chr4_4:66809079-66809098 None:intergenic 5.0%
!!! TAATATTTTTCATATTAAAA+TGG - chr4_4:66810049-66810068 None:intergenic 5.0%
TTGTGGTGTGTGAGTGACGA+GGG - chr4_4:66808414-66808433 None:intergenic 50.0%
TTTGTGGTGTGTGAGTGACG+AGG - chr4_4:66808415-66808434 None:intergenic 50.0%
AGCAGATCGAGAGAGAAAGC+GGG - chr4_4:66808451-66808470 None:intergenic 50.0%
CTCTCGATCTGCTACTGCTA+CGG + chr4_4:66808458-66808477 Msa0696810:intron 50.0%
ACCTTGTGAGACACGCTCAA+GGG + chr4_4:66808630-66808649 Msa0696810:CDS 50.0%
CAAGGGATCCACAATGTGGA+AGG + chr4_4:66808647-66808666 Msa0696810:CDS 50.0%
GATGCTCATCTCACTCCTCT+TGG + chr4_4:66808710-66808729 Msa0696810:intron 50.0%
CTCATCTCACTCCTCTTGGA+TGG + chr4_4:66808714-66808733 Msa0696810:intron 50.0%
TCAACCTGTTCCCATCCAAG+AGG - chr4_4:66808728-66808747 None:intergenic 50.0%
TTGGGCCCCCTACTATTGAT+CGG + chr4_4:66809012-66809031 Msa0696810:intron 50.0%
! CCCTGAATTAGTCGGCTCTT+AGG + chr4_4:66809046-66809065 Msa0696810:intron 50.0%
GCCTAAGAGCCGACTAATTC+AGG - chr4_4:66809050-66809069 None:intergenic 50.0%
! GAATTAGTCGGCTCTTAGGC+CGG + chr4_4:66809050-66809069 Msa0696810:intron 50.0%
! GACTTGGTAGCTGGCAGTTA+AGG - chr4_4:66809499-66809518 None:intergenic 50.0%
!! TGTAGGGTTGACTTGGTAGC+TGG - chr4_4:66809508-66809527 None:intergenic 50.0%
TGTGGGATGTAGGGTTGACT+TGG - chr4_4:66809515-66809534 None:intergenic 50.0%
! ACAGCTGTTGGGGTATTTGG+TGG + chr4_4:66811120-66811139 Msa0696810:CDS 50.0%
! CAGCTGTTGGGGTATTTGGT+GGG + chr4_4:66811121-66811140 Msa0696810:CDS 50.0%
! AGCTGTTGGGGTATTTGGTG+GGG + chr4_4:66811122-66811141 Msa0696810:CDS 50.0%
AACGGATGTGCTGCCTCTTA+TGG + chr4_4:66811164-66811183 Msa0696810:CDS 50.0%
CCTGCATTTGCCACCATAAG+AGG - chr4_4:66811180-66811199 None:intergenic 50.0%
CCTCTTATGGTGGCAAATGC+AGG + chr4_4:66811177-66811196 Msa0696810:CDS 50.0%
GTTCGCCAGCAACAATTGGT+GGG - chr4_4:66811239-66811258 None:intergenic 50.0%
AGTTCGCCAGCAACAATTGG+TGG - chr4_4:66811240-66811259 None:intergenic 50.0%
CAACCTGTCATCCCAAGATG+AGG - chr4_4:66811370-66811389 None:intergenic 50.0%
AAAGGAGGAACTGGCAGCTA+GGG + chr4_4:66812295-66812314 Msa0696810:three_prime_UTR 50.0%
GGACGAAAGGAAGTAAAGGG+GGG - chr4_4:66812833-66812852 None:intergenic 50.0%
GATCTCATCACCCTTCCTGT+TGG - chr4_4:66812905-66812924 None:intergenic 50.0%
TGGAAATGATTGCCACCCCT+TGG + chr4_4:66813395-66813414 Msa0696810:three_prime_UTR 50.0%
ATTACTAGGTCGGAGGAACG+GGG - chr4_4:66813457-66813476 None:intergenic 50.0%
CATGGAGCGAAGCTCACAAT+TGG - chr4_4:66813696-66813715 None:intergenic 50.0%
CAATTGTGAGCTTCGCTCCA+TGG + chr4_4:66813694-66813713 Msa0696810:three_prime_UTR 50.0%
TATCCGGGCAAGATACCTTC+AGG + chr4_4:66813853-66813872 Msa0696810:three_prime_UTR 50.0%
ATCCGGGCAAGATACCTTCA+GGG + chr4_4:66813854-66813873 Msa0696810:three_prime_UTR 50.0%
TATGTAAGGCAAGGCAAGGC+AGG + chr4_4:66814128-66814147 Msa0696810:three_prime_UTR 50.0%
TCGAGAGAGAAAGCGGGAAC+AGG - chr4_4:66808445-66808464 None:intergenic 55.0%
CACCTTGTGAGACACGCTCA+AGG + chr4_4:66808629-66808648 Msa0696810:CDS 55.0%
TCCCTTGAGCGTGTCTCACA+AGG - chr4_4:66808634-66808653 None:intergenic 55.0%
CGCTCAAGGGATCCACAATG+TGG + chr4_4:66808643-66808662 Msa0696810:CDS 55.0%
CACTCCTCTTGGATGGGAAC+AGG + chr4_4:66808721-66808740 Msa0696810:intron 55.0%
GGTAGCTGGCAGTTAAGGAG+TGG - chr4_4:66809494-66809513 None:intergenic 55.0%
! TGTTGGGGTATTTGGTGGGG+AGG + chr4_4:66811125-66811144 Msa0696810:CDS 55.0%
! GTTGGGGTATTTGGTGGGGA+GGG + chr4_4:66811126-66811145 Msa0696810:CDS 55.0%
GGATGTGCTGCCTCTTATGG+TGG + chr4_4:66811167-66811186 Msa0696810:CDS 55.0%
AGGGATGAACTCCCTGCATG+AGG - chr4_4:66812011-66812030 None:intergenic 55.0%
CAAAGGAGGAACTGGCAGCT+AGG + chr4_4:66812294-66812313 Msa0696810:three_prime_UTR 55.0%
AAGGAGGAACTGGCAGCTAG+GGG + chr4_4:66812296-66812315 Msa0696810:three_prime_UTR 55.0%
GGGGGGTGGAGTTCTTAAAC+TGG + chr4_4:66812315-66812334 Msa0696810:three_prime_UTR 55.0%
AGGAAGTAAAGGGGGGCTTC+TGG - chr4_4:66812826-66812845 None:intergenic 55.0%
!! AGCCCTGAAGGTATCTTGCC+CGG - chr4_4:66813859-66813878 None:intergenic 55.0%
GGACAAGCCTAGTGATGCTG+TGG + chr4_4:66813879-66813898 Msa0696810:three_prime_UTR 55.0%
AGAGAGAGCGGGTACAGTGC+AGG - chr4_4:66808309-66808328 None:intergenic 60.0%
GCGTCACTGATGCGCTGTGT+TGG + chr4_4:66809872-66809891 Msa0696810:intron 60.0%
GCGTCACTGATGCGCTGTGT+TGG + chr4_4:66809872-66809891 Msa0696810:intron 60.0%
AGGAGGAACTGGCAGCTAGG+GGG + chr4_4:66812297-66812316 Msa0696810:three_prime_UTR 60.0%
GCTTCGCTCCATGGTCCTTG+TGG + chr4_4:66813703-66813722 Msa0696810:three_prime_UTR 60.0%
GGGCAAGATACCTTCAGGGC+TGG + chr4_4:66813858-66813877 Msa0696810:three_prime_UTR 60.0%
CTAGGCTTGTCCAGCCCTGA+AGG - chr4_4:66813871-66813890 None:intergenic 60.0%
GGAGGAACTGGCAGCTAGGG+GGG + chr4_4:66812298-66812317 Msa0696810:three_prime_UTR 65.0%
GGAACTGGCAGCTAGGGGGG+TGG + chr4_4:66812301-66812320 Msa0696810:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 66808234 66814265 66808234 ID=Msa0696810;Name=Msa0696810
chr4_4 mRNA 66808234 66814265 66808234 ID=Msa0696810-mRNA-1;Parent=Msa0696810;Name=Msa0696810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.71|0.62|0.87|0.42|0.37|8|981|159
chr4_4 exon 66808234 66808240 66808234 ID=Msa0696810-mRNA-1:exon:19455;Parent=Msa0696810-mRNA-1
chr4_4 exon 66808563 66808687 66808563 ID=Msa0696810-mRNA-1:exon:19456;Parent=Msa0696810-mRNA-1
chr4_4 exon 66808743 66808822 66808743 ID=Msa0696810-mRNA-1:exon:19457;Parent=Msa0696810-mRNA-1
chr4_4 exon 66811110 66811275 66811110 ID=Msa0696810-mRNA-1:exon:19458;Parent=Msa0696810-mRNA-1
chr4_4 exon 66812018 66812336 66812018 ID=Msa0696810-mRNA-1:exon:19459;Parent=Msa0696810-mRNA-1
chr4_4 exon 66813320 66813439 66813320 ID=Msa0696810-mRNA-1:exon:19460;Parent=Msa0696810-mRNA-1
chr4_4 exon 66813533 66813732 66813533 ID=Msa0696810-mRNA-1:exon:19461;Parent=Msa0696810-mRNA-1
chr4_4 exon 66813822 66814265 66813822 ID=Msa0696810-mRNA-1:exon:19462;Parent=Msa0696810-mRNA-1
chr4_4 CDS 66808234 66808240 66808234 ID=Msa0696810-mRNA-1:cds;Parent=Msa0696810-mRNA-1
chr4_4 CDS 66808563 66808687 66808563 ID=Msa0696810-mRNA-1:cds;Parent=Msa0696810-mRNA-1
chr4_4 CDS 66808743 66808822 66808743 ID=Msa0696810-mRNA-1:cds;Parent=Msa0696810-mRNA-1
chr4_4 CDS 66811110 66811275 66811110 ID=Msa0696810-mRNA-1:cds;Parent=Msa0696810-mRNA-1
chr4_4 CDS 66812018 66812119 66812018 ID=Msa0696810-mRNA-1:cds;Parent=Msa0696810-mRNA-1
chr4_4 three_prime_UTR 66812120 66812336 66812120 ID=Msa0696810-mRNA-1:three_prime_utr;Parent=Msa0696810-mRNA-1
chr4_4 three_prime_UTR 66813320 66813439 66813320 ID=Msa0696810-mRNA-1:three_prime_utr;Parent=Msa0696810-mRNA-1
chr4_4 three_prime_UTR 66813533 66813732 66813533 ID=Msa0696810-mRNA-1:three_prime_utr;Parent=Msa0696810-mRNA-1
chr4_4 three_prime_UTR 66813822 66814265 66813822 ID=Msa0696810-mRNA-1:three_prime_utr;Parent=Msa0696810-mRNA-1
Gene Sequence

>Msa0696810

ATGAAACATTCGGAGCAATATGGATTGCGTTGCCGGCACGTGTTTGTTTCCGTTACATCGTTGCAAAACGATTCACCTTGTGAGACACGCTCAAGGGATCCACAATGTGGAAGGAGACAAAAACTACAAAGCGTTGATAATCTGCGTAAACATGTTCGTTCCTCTGGATTAATTAACAAGATCGATCTCGTCATCGCTTCTCCTTTGATGAGGACTTTGCAAACAGCTGTTGGGGTATTTGGTGGGGAGGGATACACTGATGATAAAACGGATGTGCTGCCTCTTATGGTGGCAAATGCAGGAAATAGCTTCCGTGGTGCAATTTCAAGTCATAATTGCCCACCAATTGTTGCTGGCGAACTTTGCCGTGAACATTTGGGAGTTCATCCCTGTGACAAAAGAAGAAGTGTTAGTGAGTATCAGTTCCTTTTTCCTGCTGTTGATTTTTCACTGGCAAGTGCTTATACTTCAAGTGCCTGA
Protein sequence

>Msa0696810

MKHSEQYGLRCRHVFVSVTSLQNDSPCETRSRDPQCGRRQKLQSVDNLRKHVRSSGLINKIDLVIASPLMRTLQTAVGVFGGEGYTDDKTDVLPLMVANAGNSFRGAISSHNCPPIVAGELCREHLGVHPCDKRRSVSEYQFLFPAVDFSLASAYTSSA*