Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0654550 | AES90525.2 | 94.753 | 324 | 17 | 0 | 28 | 351 | 10 | 333 | 0.0 | 637 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0654550 | sp|Q9T072|BH025_ARATH | 55.556 | 180 | 75 | 3 | 175 | 351 | 151 | 328 | 2.91e-53 | 181 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0654550 | G7JTZ1 | 94.753 | 324 | 17 | 0 | 28 | 351 | 10 | 333 | 0.0 | 637 |
Gene ID | Type | Classification |
---|---|---|
Msa0654550 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0654550 | Msa1412820 | 0.817988 | 2.478068e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0654550 | MtrunA17_Chr4g0049331 | 94.839 | 310 | 16 | 0 | 42 | 351 | 1 | 310 | 0.0 | 611 |
Msa0654550 | MtrunA17_Chr2g0280161 | 53.009 | 349 | 120 | 9 | 45 | 351 | 7 | 353 | 2.61e-109 | 323 |
Msa0654550 | MtrunA17_Chr5g0400661 | 54.011 | 187 | 71 | 3 | 175 | 347 | 148 | 333 | 1.63e-56 | 187 |
Msa0654550 | MtrunA17_Chr4g0054561 | 37.910 | 335 | 176 | 9 | 42 | 351 | 1 | 328 | 4.15e-54 | 181 |
Msa0654550 | MtrunA17_Chr4g0054551 | 37.313 | 335 | 178 | 9 | 42 | 351 | 1 | 328 | 6.26e-52 | 175 |
Msa0654550 | MtrunA17_Chr5g0400621 | 49.198 | 187 | 93 | 2 | 159 | 344 | 140 | 325 | 8.39e-51 | 172 |
Msa0654550 | MtrunA17_Chr4g0054571 | 54.749 | 179 | 68 | 4 | 176 | 344 | 150 | 325 | 1.42e-44 | 155 |
Msa0654550 | MtrunA17_Chr5g0400671 | 39.409 | 203 | 110 | 3 | 154 | 347 | 124 | 322 | 1.01e-43 | 153 |
Msa0654550 | MtrunA17_Chr8g0336681 | 40.179 | 224 | 112 | 4 | 141 | 344 | 110 | 331 | 6.05e-43 | 152 |
Msa0654550 | MtrunA17_Chr2g0333621 | 42.927 | 205 | 110 | 3 | 146 | 347 | 110 | 310 | 5.09e-42 | 149 |
Msa0654550 | MtrunA17_Chr6g0468491 | 45.000 | 180 | 97 | 2 | 166 | 344 | 127 | 305 | 8.41e-42 | 148 |
Msa0654550 | MtrunA17_Chr4g0054581 | 44.724 | 199 | 100 | 5 | 160 | 351 | 182 | 377 | 9.94e-42 | 149 |
Msa0654550 | MtrunA17_Chr2g0307131 | 41.848 | 184 | 107 | 0 | 168 | 351 | 171 | 354 | 1.17e-39 | 143 |
Msa0654550 | MtrunA17_Chr4g0033291 | 40.000 | 215 | 107 | 5 | 148 | 350 | 122 | 326 | 4.74e-39 | 141 |
Msa0654550 | MtrunA17_Chr4g0002801 | 43.820 | 178 | 94 | 2 | 176 | 347 | 152 | 329 | 9.17e-39 | 140 |
Msa0654550 | MtrunA17_Chr2g0307141 | 41.243 | 177 | 104 | 0 | 175 | 351 | 182 | 358 | 2.65e-38 | 140 |
Msa0654550 | MtrunA17_Chr4g0002781 | 43.429 | 175 | 96 | 1 | 176 | 347 | 174 | 348 | 4.87e-37 | 136 |
Msa0654550 | MtrunA17_Chr4g0033391 | 39.583 | 192 | 100 | 4 | 166 | 351 | 138 | 319 | 2.73e-36 | 134 |
Msa0654550 | MtrunA17_Chr5g0400641 | 44.516 | 155 | 84 | 2 | 179 | 332 | 1 | 154 | 2.92e-36 | 129 |
Msa0654550 | MtrunA17_Chr7g0225901 | 40.314 | 191 | 101 | 4 | 146 | 329 | 57 | 241 | 4.32e-36 | 131 |
Msa0654550 | MtrunA17_Chr4g0033281 | 37.915 | 211 | 118 | 4 | 148 | 351 | 120 | 324 | 4.84e-36 | 133 |
Msa0654550 | MtrunA17_Chr2g0333641 | 43.103 | 174 | 97 | 1 | 176 | 349 | 137 | 308 | 9.22e-36 | 132 |
Msa0654550 | MtrunA17_Chr7g0249811 | 43.158 | 190 | 96 | 5 | 156 | 344 | 146 | 324 | 1.21e-35 | 132 |
Msa0654550 | MtrunA17_Chr4g0054621 | 37.438 | 203 | 118 | 3 | 150 | 351 | 146 | 340 | 9.33e-35 | 130 |
Msa0654550 | MtrunA17_Chr2g0333611 | 39.326 | 178 | 90 | 5 | 175 | 344 | 44 | 211 | 6.90e-34 | 124 |
Msa0654550 | MtrunA17_Chr6g0468461 | 44.805 | 154 | 71 | 4 | 175 | 328 | 172 | 311 | 3.15e-29 | 115 |
Msa0654550 | MtrunA17_Chr2g0333541 | 38.119 | 202 | 115 | 5 | 151 | 348 | 73 | 268 | 3.20e-28 | 111 |
Msa0654550 | MtrunA17_Chr4g0002831 | 36.723 | 177 | 98 | 5 | 174 | 349 | 42 | 205 | 9.36e-24 | 97.4 |
Msa0654550 | MtrunA17_Chr7g0233441 | 35.948 | 153 | 88 | 2 | 197 | 349 | 55 | 197 | 8.73e-23 | 94.4 |
Msa0654550 | MtrunA17_Chr4g0002851 | 35.294 | 153 | 81 | 2 | 197 | 349 | 63 | 197 | 1.57e-21 | 90.9 |
Msa0654550 | MtrunA17_Chr7g0260841 | 53.125 | 64 | 30 | 0 | 174 | 237 | 353 | 416 | 6.22e-16 | 79.0 |
Msa0654550 | MtrunA17_Chr7g0275821 | 34.058 | 138 | 81 | 3 | 174 | 310 | 250 | 378 | 1.22e-15 | 77.8 |
Msa0654550 | MtrunA17_Chr1g0185621 | 29.310 | 174 | 113 | 3 | 144 | 307 | 441 | 614 | 1.40e-15 | 77.8 |
Msa0654550 | MtrunA17_Chr8g0366751 | 30.380 | 158 | 81 | 3 | 174 | 311 | 460 | 608 | 4.86e-15 | 76.3 |
Msa0654550 | MtrunA17_Chr8g0346161 | 29.091 | 165 | 98 | 4 | 161 | 314 | 274 | 430 | 2.74e-14 | 73.6 |
Msa0654550 | MtrunA17_Chr3g0131691 | 27.711 | 166 | 104 | 3 | 170 | 322 | 292 | 454 | 5.07e-14 | 72.8 |
Msa0654550 | MtrunA17_Chr5g0411341 | 28.188 | 149 | 96 | 2 | 174 | 311 | 491 | 639 | 9.26e-13 | 69.3 |
Msa0654550 | MtrunA17_Chr8g0386921 | 46.269 | 67 | 36 | 0 | 166 | 232 | 396 | 462 | 1.03e-12 | 69.3 |
Msa0654550 | MtrunA17_Chr7g0252041 | 29.012 | 162 | 103 | 4 | 173 | 322 | 283 | 444 | 1.21e-12 | 68.6 |
Msa0654550 | MtrunA17_Chr8g0365711 | 27.935 | 247 | 159 | 9 | 91 | 325 | 159 | 398 | 2.70e-12 | 67.4 |
Msa0654550 | MtrunA17_Chr8g0346151 | 26.601 | 203 | 123 | 5 | 161 | 351 | 262 | 450 | 9.61e-12 | 65.9 |
Msa0654550 | MtrunA17_Chr2g0320291 | 30.216 | 139 | 91 | 3 | 178 | 314 | 135 | 269 | 1.14e-11 | 65.1 |
Msa0654550 | MtrunA17_Chr2g0298751 | 26.829 | 164 | 103 | 4 | 177 | 325 | 53 | 214 | 1.88e-11 | 63.5 |
Msa0654550 | MtrunA17_Chr5g0411541 | 22.297 | 296 | 187 | 8 | 78 | 343 | 32 | 314 | 2.43e-11 | 63.9 |
Msa0654550 | MtrunA17_Chr1g0211081 | 49.091 | 55 | 28 | 0 | 177 | 231 | 318 | 372 | 3.16e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0654550 | AT4G37850.2 | 55.556 | 180 | 75 | 3 | 175 | 351 | 151 | 328 | 2.95e-54 | 181 |
Msa0654550 | AT4G37850.1 | 55.556 | 180 | 75 | 3 | 175 | 351 | 151 | 328 | 2.95e-54 | 181 |
Msa0654550 | AT2G22760.1 | 47.727 | 176 | 88 | 2 | 173 | 344 | 116 | 291 | 4.91e-48 | 164 |
Msa0654550 | AT2G22750.2 | 49.767 | 215 | 94 | 7 | 136 | 343 | 90 | 297 | 2.76e-44 | 154 |
Msa0654550 | AT2G22750.5 | 49.767 | 215 | 94 | 7 | 136 | 343 | 114 | 321 | 4.32e-44 | 155 |
Msa0654550 | AT2G22750.3 | 49.767 | 215 | 94 | 7 | 136 | 343 | 118 | 325 | 4.86e-44 | 155 |
Msa0654550 | AT2G22750.1 | 49.767 | 215 | 93 | 8 | 136 | 343 | 90 | 296 | 8.87e-43 | 150 |
Msa0654550 | AT2G22750.4 | 49.767 | 215 | 93 | 8 | 136 | 343 | 118 | 324 | 1.16e-42 | 151 |
Msa0654550 | AT2G22760.2 | 45.283 | 159 | 84 | 1 | 173 | 328 | 116 | 274 | 4.61e-40 | 143 |
Msa0654550 | AT2G22770.1 | 43.850 | 187 | 90 | 2 | 173 | 344 | 129 | 315 | 7.38e-40 | 143 |
Msa0654550 | AT2G46510.1 | 42.342 | 111 | 46 | 2 | 174 | 284 | 393 | 485 | 7.72e-18 | 85.1 |
Msa0654550 | AT1G32640.1 | 34.965 | 143 | 86 | 2 | 174 | 312 | 450 | 589 | 1.82e-15 | 78.2 |
Msa0654550 | AT1G01260.1 | 32.680 | 153 | 89 | 5 | 92 | 232 | 339 | 489 | 1.98e-14 | 74.7 |
Msa0654550 | AT1G01260.2 | 32.680 | 153 | 89 | 5 | 92 | 232 | 339 | 489 | 1.98e-14 | 74.7 |
Msa0654550 | AT1G01260.3 | 32.680 | 153 | 89 | 5 | 92 | 232 | 339 | 489 | 1.98e-14 | 74.7 |
Msa0654550 | AT5G46760.1 | 31.579 | 152 | 82 | 4 | 174 | 312 | 413 | 555 | 5.19e-14 | 73.6 |
Msa0654550 | AT4G29930.6 | 28.492 | 179 | 95 | 5 | 165 | 331 | 46 | 203 | 1.23e-13 | 70.1 |
Msa0654550 | AT4G17880.1 | 30.556 | 144 | 90 | 3 | 174 | 312 | 414 | 552 | 1.23e-13 | 72.4 |
Msa0654550 | AT2G16910.1 | 29.897 | 194 | 100 | 7 | 177 | 342 | 315 | 500 | 1.56e-13 | 72.0 |
Msa0654550 | AT4G29930.2 | 30.952 | 168 | 102 | 6 | 165 | 331 | 46 | 200 | 2.61e-13 | 68.9 |
Msa0654550 | AT4G16430.1 | 48.438 | 64 | 33 | 0 | 176 | 239 | 320 | 383 | 3.12e-13 | 70.9 |
Msa0654550 | AT1G12860.2 | 29.299 | 157 | 103 | 4 | 173 | 322 | 264 | 419 | 3.28e-13 | 70.9 |
Msa0654550 | AT5G57150.3 | 32.903 | 155 | 83 | 4 | 177 | 316 | 56 | 204 | 3.97e-13 | 68.2 |
Msa0654550 | AT5G57150.5 | 32.903 | 155 | 83 | 4 | 177 | 316 | 55 | 203 | 4.12e-13 | 68.2 |
Msa0654550 | AT5G57150.2 | 32.903 | 155 | 83 | 4 | 177 | 316 | 56 | 204 | 4.17e-13 | 68.6 |
Msa0654550 | AT1G12860.1 | 29.299 | 157 | 103 | 4 | 173 | 322 | 264 | 419 | 4.28e-13 | 70.5 |
Msa0654550 | AT3G26744.6 | 29.193 | 161 | 102 | 4 | 173 | 322 | 304 | 463 | 4.69e-13 | 70.5 |
Msa0654550 | AT3G26744.1 | 29.193 | 161 | 102 | 4 | 173 | 322 | 304 | 463 | 5.50e-13 | 70.1 |
Msa0654550 | AT3G26744.4 | 29.193 | 161 | 102 | 4 | 173 | 322 | 304 | 463 | 5.50e-13 | 70.1 |
Msa0654550 | AT3G26744.2 | 29.193 | 161 | 102 | 4 | 173 | 322 | 304 | 463 | 5.50e-13 | 70.1 |
Msa0654550 | AT5G57150.1 | 32.903 | 155 | 83 | 4 | 177 | 316 | 55 | 203 | 7.36e-13 | 68.2 |
Msa0654550 | AT5G57150.4 | 32.903 | 155 | 83 | 4 | 177 | 316 | 56 | 204 | 1.03e-12 | 67.8 |
Msa0654550 | AT4G09820.1 | 30.282 | 142 | 70 | 4 | 173 | 308 | 357 | 475 | 1.57e-12 | 68.9 |
Msa0654550 | AT4G29930.5 | 29.697 | 165 | 102 | 5 | 165 | 328 | 46 | 197 | 1.66e-12 | 67.0 |
Msa0654550 | AT1G63650.3 | 38.554 | 83 | 51 | 0 | 176 | 258 | 405 | 487 | 1.68e-12 | 68.9 |
Msa0654550 | AT1G63650.1 | 38.554 | 83 | 51 | 0 | 176 | 258 | 405 | 487 | 1.68e-12 | 68.9 |
Msa0654550 | AT1G63650.2 | 38.554 | 83 | 51 | 0 | 176 | 258 | 405 | 487 | 1.68e-12 | 68.9 |
Msa0654550 | AT3G61950.6 | 31.387 | 137 | 86 | 4 | 176 | 307 | 128 | 261 | 1.67e-11 | 64.7 |
Msa0654550 | AT4G29930.1 | 28.723 | 188 | 109 | 7 | 165 | 331 | 46 | 229 | 2.71e-11 | 63.5 |
Msa0654550 | AT3G61950.2 | 30.556 | 144 | 92 | 4 | 176 | 314 | 128 | 268 | 2.88e-11 | 63.9 |
Msa0654550 | AT3G61950.3 | 31.387 | 137 | 86 | 4 | 176 | 307 | 179 | 312 | 3.42e-11 | 64.3 |
Msa0654550 | AT4G29930.4 | 44.776 | 67 | 34 | 1 | 165 | 231 | 46 | 109 | 4.83e-11 | 61.6 |
Msa0654550 | AT3G61950.1 | 30.556 | 144 | 92 | 4 | 176 | 314 | 179 | 319 | 6.31e-11 | 63.5 |
Msa0654550 | AT5G41315.2 | 35.789 | 95 | 53 | 2 | 143 | 229 | 408 | 502 | 8.30e-11 | 63.9 |
Msa0654550 | AT5G41315.1 | 35.789 | 95 | 53 | 2 | 143 | 229 | 400 | 494 | 8.63e-11 | 63.5 |
Msa0654550 | AT5G41315.3 | 35.789 | 95 | 53 | 2 | 143 | 229 | 405 | 499 | 8.74e-11 | 63.5 |
Find 61 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATCTTGCTTCAATTTC+TGG | 0.046048 | 4_3:-62732967 | None:intergenic |
GCAGTTTCCATTGAAATTCT+AGG | 0.225163 | 4_3:-62732186 | None:intergenic |
GAAAATTCTTCTGCAGAATT+TGG | 0.250591 | 4_3:+62732922 | Msa0654550:CDS |
ATGGACAAAGTTACTGTTCT+TGG | 0.276006 | 4_3:+62732775 | Msa0654550:CDS |
TTTCAAGGTTAGCTTTCTTA+TGG | 0.291733 | 4_3:+62731785 | Msa0654550:CDS |
AATAGCAGTTTCATGACATT+TGG | 0.296146 | 4_3:+62733087 | Msa0654550:CDS |
GCTTTCTTTCAGATATTATA+TGG | 0.308934 | 4_3:-62732416 | None:intergenic |
CTGCCAATAGGTACTGCTTT+TGG | 0.314519 | 4_3:+62732120 | Msa0654550:CDS |
GCTCTATCTTCCCTTGTTCC+CGG | 0.327620 | 4_3:+62732468 | Msa0654550:CDS |
GTGCAATTTGCAGATGGATA+TGG | 0.328392 | 4_3:+62733318 | Msa0654550:intron |
GATTGAGTTTCTCAATTTCA+TGG | 0.328907 | 4_3:-62733053 | None:intergenic |
GAACCAATCATCTCATCCTT+AGG | 0.367456 | 4_3:-62732297 | None:intergenic |
GAAATTCTAGGGTTGAAGTT+TGG | 0.375240 | 4_3:-62732174 | None:intergenic |
AGGAACCTTTGAGGCCAAAA+AGG | 0.379217 | 4_3:+62732359 | Msa0654550:CDS |
TCGACAAATGAAAGAAGATT+CGG | 0.392423 | 4_3:-62732240 | None:intergenic |
CTTCAACCCTAGAATTTCAA+TGG | 0.403679 | 4_3:+62732179 | Msa0654550:CDS |
TATCAGAGGGTTTCCTGAGC+AGG | 0.415708 | 4_3:+62731821 | Msa0654550:CDS |
ATAGCAGTTTCATGACATTT+GGG | 0.420095 | 4_3:+62733088 | Msa0654550:CDS |
TTTGAATCAGTTAAATCAGT+TGG | 0.433019 | 4_3:+62732263 | Msa0654550:CDS |
CCTTGTTCCCGGACTACAAA+AGG | 0.436297 | 4_3:+62732479 | Msa0654550:CDS |
TCTCACAGTGAACTCTTATG+AGG | 0.440028 | 4_3:-62733002 | None:intergenic |
TCTTGAGGAAGAGAGAGTTT+AGG | 0.440922 | 4_3:-62732393 | None:intergenic |
TTGAATCAGTTAAATCAGTT+GGG | 0.451883 | 4_3:+62732264 | Msa0654550:CDS |
GAGTCTAACTCACTGCCAAT+AGG | 0.462111 | 4_3:+62732108 | Msa0654550:CDS |
CAGTTTCCATTGAAATTCTA+GGG | 0.464030 | 4_3:-62732185 | None:intergenic |
TCTCCAAAAGCAGTACCTAT+TGG | 0.467684 | 4_3:-62732123 | None:intergenic |
GAGAATATTTCATTTATCAG+AGG | 0.468225 | 4_3:+62731807 | Msa0654550:CDS |
CGACAAATGAAAGAAGATTC+GGG | 0.471965 | 4_3:-62732239 | None:intergenic |
ACTATATGTCTTACCTGCTC+AGG | 0.472883 | 4_3:-62731834 | None:intergenic |
TTCTGGCAGTTCCTCGTCAA+AGG | 0.474337 | 4_3:-62732950 | None:intergenic |
TTTGATCTTGCAGGAAATGA+TGG | 0.481839 | 4_3:+62732038 | Msa0654550:intron |
AACCAATCATCTCATCCTTA+GGG | 0.484158 | 4_3:-62732296 | None:intergenic |
GATTTCTCAAGGAACCTTTG+AGG | 0.485480 | 4_3:+62732350 | Msa0654550:CDS |
AAATGTCATGAAACTGCTAT+TGG | 0.489746 | 4_3:-62733085 | None:intergenic |
AATTCTTCTGCAGAATTTGG+TGG | 0.492167 | 4_3:+62732925 | Msa0654550:CDS |
TCTGGCAGTTCCTCGTCAAA+GGG | 0.506650 | 4_3:-62732949 | None:intergenic |
CTTCATTTCTTCATCATCAG+TGG | 0.507118 | 4_3:+62732067 | Msa0654550:CDS |
TCAGTTAAATCAGTTGGGAT+TGG | 0.511136 | 4_3:+62732269 | Msa0654550:CDS |
AACCCTAAGGATGAGATGAT+TGG | 0.511495 | 4_3:+62732294 | Msa0654550:CDS |
GCTAACCTTGAAATCAAAAG+TGG | 0.527937 | 4_3:-62731775 | None:intergenic |
TGATATAACAATTATTGCAC+AGG | 0.531379 | 4_3:+62733122 | Msa0654550:CDS |
AGAATATTTCATTTATCAGA+GGG | 0.537343 | 4_3:+62731808 | Msa0654550:CDS |
TGAGAAAATCAAAGGAGTTG+TGG | 0.539482 | 4_3:+62733020 | Msa0654550:CDS |
TGACTACGACTTTAGAGCAT+AGG | 0.542716 | 4_3:+62729742 | Msa0654550:CDS |
CTTGAAATCAAAAGTGGTCA+AGG | 0.550689 | 4_3:-62731769 | None:intergenic |
CACTGATGATGAAGAAATGA+AGG | 0.551145 | 4_3:-62732066 | None:intergenic |
TCTTCCGACATGATTTCTCA+AGG | 0.551521 | 4_3:+62732339 | Msa0654550:CDS |
TCAGATATTATATGGTCTTG+AGG | 0.555208 | 4_3:-62732408 | None:intergenic |
GTTGGGATTGGTGAACCCTA+AGG | 0.558665 | 4_3:+62732281 | Msa0654550:CDS |
AAGATAGAGCAATGAAGCGC+TGG | 0.560225 | 4_3:-62732455 | None:intergenic |
GTTCACTGTGAGAAAATCAA+AGG | 0.561408 | 4_3:+62733012 | Msa0654550:CDS |
AGTTTGGATAAACGTATGAA+TGG | 0.568981 | 4_3:-62732158 | None:intergenic |
AGAGAAGGTGAAGGTTCTTG+AGG | 0.571434 | 4_3:+62732828 | Msa0654550:CDS |
CTTGAAGAAATTGCAAGAGA+AGG | 0.585063 | 4_3:+62732813 | Msa0654550:CDS |
GAAGGTGAAGGTTCTTGAGG+AGG | 0.607165 | 4_3:+62732831 | Msa0654550:CDS |
ATATAATATCTGAAAGAAAG+CGG | 0.617975 | 4_3:+62732418 | Msa0654550:CDS |
ATTTGGTGGTCCCTTTGACG+AGG | 0.618695 | 4_3:+62732939 | Msa0654550:CDS |
AATGAAAGAAGATTCGGGTA+CGG | 0.630607 | 4_3:-62732234 | None:intergenic |
GATCTTGCAGGAAATGATGG+AGG | 0.636854 | 4_3:+62732041 | Msa0654550:intron |
GAAATTGCAAGAGAAGGTGA+AGG | 0.642638 | 4_3:+62732819 | Msa0654550:CDS |
GGTTCCTTGAGAAATCATGT+CGG | 0.702500 | 4_3:-62732343 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATGTTGATATTAAAA+AGG | - | chr4_3:62729977-62729996 | None:intergenic | 10.0% |
!! | AAAAACATAAGTAAATTTAA+TGG | + | chr4_3:62730136-62730155 | Msa0654550:intron | 10.0% |
!!! | TAACATTTTTTTATATTTAG+AGG | - | chr4_3:62731434-62731453 | None:intergenic | 10.0% |
!! | AAGAATTAATCAAGTAAATA+AGG | + | chr4_3:62731257-62731276 | Msa0654550:intron | 15.0% |
!! | AAATAATAGAAAATTATGCA+TGG | - | chr4_3:62733251-62733270 | None:intergenic | 15.0% |
!! | ATTGAAACCAGTAATAATTT+GGG | + | chr4_3:62730924-62730943 | Msa0654550:intron | 20.0% |
!!! | TTATTTTCCCAAATTATTAC+TGG | - | chr4_3:62730934-62730953 | None:intergenic | 20.0% |
!!! | ATTTTCCCAAATAAATATGT+CGG | + | chr4_3:62731068-62731087 | Msa0654550:intron | 20.0% |
!! | AAATACCGACATATTTATTT+GGG | - | chr4_3:62731076-62731095 | None:intergenic | 20.0% |
!! | AAAATACCGACATATTTATT+TGG | - | chr4_3:62731077-62731096 | None:intergenic | 20.0% |
!! | ACTAAGAAAATTAGATATGA+GGG | + | chr4_3:62731228-62731247 | Msa0654550:intron | 20.0% |
!!! | TTTATTGATTGAGAAATAGT+AGG | + | chr4_3:62731462-62731481 | Msa0654550:intron | 20.0% |
!!! | GTTTTGCTGAATAATATAAT+TGG | + | chr4_3:62731728-62731747 | Msa0654550:intron | 20.0% |
!!! | TAATATAATTGGTTTGATAC+AGG | + | chr4_3:62731739-62731758 | Msa0654550:intron | 20.0% |
!! | AGAATATTTCATTTATCAGA+GGG | + | chr4_3:62731808-62731827 | Msa0654550:CDS | 20.0% |
!! | AAAGAGAAGTAATCTAATAA+AGG | + | chr4_3:62731968-62731987 | Msa0654550:intron | 20.0% |
!! | ATATAATATCTGAAAGAAAG+CGG | + | chr4_3:62732418-62732437 | Msa0654550:CDS | 20.0% |
!! | ATTTAGTGTTTACTATTAGT+AGG | + | chr4_3:62732665-62732684 | Msa0654550:intron | 20.0% |
!! | AATATATAAGAATGTGTTTG+TGG | + | chr4_3:62732698-62732717 | Msa0654550:intron | 20.0% |
!! | TATGCATTTTCATTGTACAA+TGG | + | chr4_3:62730026-62730045 | Msa0654550:intron | 25.0% |
!! | ATGCATTTTCATTGTACAAT+GGG | + | chr4_3:62730027-62730046 | Msa0654550:intron | 25.0% |
!!! | ATCTCTAATTTTAGTAGCTT+TGG | + | chr4_3:62730231-62730250 | Msa0654550:intron | 25.0% |
! | AATATGAGTGCAATTTGTAA+TGG | + | chr4_3:62730383-62730402 | Msa0654550:intron | 25.0% |
! | ATATGAGTGCAATTTGTAAT+GGG | + | chr4_3:62730384-62730403 | Msa0654550:intron | 25.0% |
! | CATTGAAACCAGTAATAATT+TGG | + | chr4_3:62730923-62730942 | Msa0654550:intron | 25.0% |
! | TTGAAATTGCAATCAATAAC+CGG | + | chr4_3:62731095-62731114 | Msa0654550:intron | 25.0% |
! | TGACATATATCTACTGATAT+AGG | + | chr4_3:62731129-62731148 | Msa0654550:intron | 25.0% |
! | GACTAAGAAAATTAGATATG+AGG | + | chr4_3:62731227-62731246 | Msa0654550:intron | 25.0% |
! | ATATAACTTCTGTTGTATTG+TGG | - | chr4_3:62731396-62731415 | None:intergenic | 25.0% |
!! | TTCAGTATTTGTTAATGTGA+GGG | - | chr4_3:62731629-62731648 | None:intergenic | 25.0% |
!! | TTTCAGTATTTGTTAATGTG+AGG | - | chr4_3:62731630-62731649 | None:intergenic | 25.0% |
! | CAGTGTAAAATTCTTAATGA+TGG | - | chr4_3:62731707-62731726 | None:intergenic | 25.0% |
! | GAGAATATTTCATTTATCAG+AGG | + | chr4_3:62731807-62731826 | Msa0654550:CDS | 25.0% |
! | CTTACTATACATTCATACTT+TGG | + | chr4_3:62731881-62731900 | Msa0654550:intron | 25.0% |
!!! | CTTATTTTCTAACCAAATGT+TGG | - | chr4_3:62731929-62731948 | None:intergenic | 25.0% |
! | TTTGAATCAGTTAAATCAGT+TGG | + | chr4_3:62732263-62732282 | Msa0654550:CDS | 25.0% |
! | TTGAATCAGTTAAATCAGTT+GGG | + | chr4_3:62732264-62732283 | Msa0654550:CDS | 25.0% |
! | GCTTTCTTTCAGATATTATA+TGG | - | chr4_3:62732419-62732438 | None:intergenic | 25.0% |
!! | TTTTTATACCTTTTGTAGTC+CGG | - | chr4_3:62732490-62732509 | None:intergenic | 25.0% |
! | CTCTACAAAACAAATTTGTA+AGG | + | chr4_3:62732557-62732576 | Msa0654550:intron | 25.0% |
!! | AGAAGAATTTTCAACATCAT+TGG | - | chr4_3:62732914-62732933 | None:intergenic | 25.0% |
! | TGATATAACAATTATTGCAC+AGG | + | chr4_3:62733122-62733141 | Msa0654550:CDS | 25.0% |
! | ACTACAATTGTCTATCAATA+TGG | + | chr4_3:62733286-62733305 | Msa0654550:intron | 25.0% |
!! | CTAAAGTCGTAGTCATTTTA+TGG | - | chr4_3:62729737-62729756 | None:intergenic | 30.0% |
TTATATATGGTCGTTTGGTA+GGG | - | chr4_3:62729944-62729963 | None:intergenic | 30.0% | |
AGGTTAGTAGCACTTATATA+TGG | - | chr4_3:62729957-62729976 | None:intergenic | 30.0% | |
TTTAAGCATACAGTGAAATG+TGG | - | chr4_3:62730053-62730072 | None:intergenic | 30.0% | |
!! | TAGTAGCTTTGGTAAATTCA+CGG | + | chr4_3:62730242-62730261 | Msa0654550:intron | 30.0% |
AAGAAGAAAATGAGACACAA+TGG | + | chr4_3:62730269-62730288 | Msa0654550:intron | 30.0% | |
AGTAAAGTCCATTAAGGATT+TGG | + | chr4_3:62730820-62730839 | Msa0654550:intron | 30.0% | |
GTAAAGTCCATTAAGGATTT+GGG | + | chr4_3:62730821-62730840 | Msa0654550:intron | 30.0% | |
! | TATGACTTTTCTTGATTGTG+TGG | - | chr4_3:62731323-62731342 | None:intergenic | 30.0% |
AATATCACTGTATCCTAACT+TGG | - | chr4_3:62731542-62731561 | None:intergenic | 30.0% | |
AGTTAGGATACAGTGATATT+AGG | + | chr4_3:62731542-62731561 | Msa0654550:intron | 30.0% | |
ACCACAAAGACCATATATAT+AGG | + | chr4_3:62731577-62731596 | Msa0654550:intron | 30.0% | |
!! | TTTCAAGGTTAGCTTTCTTA+TGG | + | chr4_3:62731785-62731804 | Msa0654550:CDS | 30.0% |
! | TTTTCTAACCAAATGTTGGA+TGG | - | chr4_3:62731925-62731944 | None:intergenic | 30.0% |
! | AGTAATCTAATAAAGGCACA+AGG | + | chr4_3:62731975-62731994 | Msa0654550:intron | 30.0% |
! | ACATGTTTTCACAATGTTCA+TGG | - | chr4_3:62732017-62732036 | None:intergenic | 30.0% |
AGTTTGGATAAACGTATGAA+TGG | - | chr4_3:62732161-62732180 | None:intergenic | 30.0% | |
CAGTTTCCATTGAAATTCTA+GGG | - | chr4_3:62732188-62732207 | None:intergenic | 30.0% | |
TCGACAAATGAAAGAAGATT+CGG | - | chr4_3:62732243-62732262 | None:intergenic | 30.0% | |
! | TCAGATATTATATGGTCTTG+AGG | - | chr4_3:62732411-62732430 | None:intergenic | 30.0% |
! | TTTTATACCTTTTGTAGTCC+GGG | - | chr4_3:62732489-62732508 | None:intergenic | 30.0% |
TATCTATGTTGAACACATGT+TGG | + | chr4_3:62732639-62732658 | Msa0654550:intron | 30.0% | |
TTTACTATTAGTAGGACACA+CGG | + | chr4_3:62732673-62732692 | Msa0654550:intron | 30.0% | |
GAAAATTCTTCTGCAGAATT+TGG | + | chr4_3:62732922-62732941 | Msa0654550:CDS | 30.0% | |
CAAAATCTTGCTTCAATTTC+TGG | - | chr4_3:62732970-62732989 | None:intergenic | 30.0% | |
GATTGAGTTTCTCAATTTCA+TGG | - | chr4_3:62733056-62733075 | None:intergenic | 30.0% | |
AAATGTCATGAAACTGCTAT+TGG | - | chr4_3:62733088-62733107 | None:intergenic | 30.0% | |
AATAGCAGTTTCATGACATT+TGG | + | chr4_3:62733087-62733106 | Msa0654550:CDS | 30.0% | |
ATAGCAGTTTCATGACATTT+GGG | + | chr4_3:62733088-62733107 | Msa0654550:CDS | 30.0% | |
GACAATTGTAGTAATTTCGT+TGG | - | chr4_3:62733278-62733297 | None:intergenic | 30.0% | |
! | TACAGTATACACGTTTTGCT+AGG | + | chr4_3:62729775-62729794 | Msa0654550:CDS | 35.0% |
TTAATTGATCTTGTGCTACC+TGG | - | chr4_3:62729848-62729867 | None:intergenic | 35.0% | |
AAAACCAGCTTGAAAAAACC+TGG | + | chr4_3:62729872-62729891 | Msa0654550:intron | 35.0% | |
CTTATATATGGTCGTTTGGT+AGG | - | chr4_3:62729945-62729964 | None:intergenic | 35.0% | |
AGCACTTATATATGGTCGTT+TGG | - | chr4_3:62729949-62729968 | None:intergenic | 35.0% | |
!! | AGTTTCTAAAACGAGGAGTT+TGG | - | chr4_3:62730299-62730318 | None:intergenic | 35.0% |
!! | CCTACATAGTTTCTAAAACG+AGG | - | chr4_3:62730306-62730325 | None:intergenic | 35.0% |
!!! | CCTCGTTTTAGAAACTATGT+AGG | + | chr4_3:62730303-62730322 | Msa0654550:intron | 35.0% |
TTCGTACAAAATAGCATGAC+TGG | - | chr4_3:62730338-62730357 | None:intergenic | 35.0% | |
!!! | TTTTGATTTGAGCACTGAGA+TGG | + | chr4_3:62730456-62730475 | Msa0654550:intron | 35.0% |
GAGTGTGTGTACATTTCTAA+TGG | + | chr4_3:62730615-62730634 | Msa0654550:intron | 35.0% | |
! | TTTCTAATGGTTTCTAGACG+AGG | + | chr4_3:62730628-62730647 | Msa0654550:intron | 35.0% |
GAGATTTCCAGCATAATTTG+TGG | + | chr4_3:62730690-62730709 | Msa0654550:intron | 35.0% | |
ATCATCATCATCATCATCGT+GGG | - | chr4_3:62730735-62730754 | None:intergenic | 35.0% | |
! | GATGATGATGATGATGATGA+TGG | + | chr4_3:62730737-62730756 | Msa0654550:intron | 35.0% |
!! | CTTAATGGACTTTACTACAG+AGG | - | chr4_3:62730816-62730835 | None:intergenic | 35.0% |
CTCTGTAGTAAAGTCCATTA+AGG | + | chr4_3:62730814-62730833 | Msa0654550:intron | 35.0% | |
GCTTAAACCCAAATCCTTAA+TGG | - | chr4_3:62730831-62730850 | None:intergenic | 35.0% | |
TGTATGTGTCAATGCTTCAT+AGG | - | chr4_3:62730889-62730908 | None:intergenic | 35.0% | |
GTTTCAATGTGTGTCGTATT+CGG | - | chr4_3:62730912-62730931 | None:intergenic | 35.0% | |
TTGAATGCAATCACATGTGT+CGG | + | chr4_3:62730959-62730978 | Msa0654550:intron | 35.0% | |
AAATTGCAATCAATAACCGG+TGG | + | chr4_3:62731098-62731117 | Msa0654550:intron | 35.0% | |
ATATGTCATGAATTAGCCAC+CGG | - | chr4_3:62731117-62731136 | None:intergenic | 35.0% | |
GAGCTAATTAGCTAACGTAT+TGG | - | chr4_3:62731180-62731199 | None:intergenic | 35.0% | |
! | AGCTCTTTTAGTGATGATTG+TGG | + | chr4_3:62731195-62731214 | Msa0654550:intron | 35.0% |
AAAATTAGATATGAGGGTCG+AGG | + | chr4_3:62731234-62731253 | Msa0654550:intron | 35.0% | |
! | TGTTGTATTGTGGACTTTTG+GGG | - | chr4_3:62731386-62731405 | None:intergenic | 35.0% |
! | CTGTTGTATTGTGGACTTTT+GGG | - | chr4_3:62731387-62731406 | None:intergenic | 35.0% |
! | TCTGTTGTATTGTGGACTTT+TGG | - | chr4_3:62731388-62731407 | None:intergenic | 35.0% |
TTGAGAAATAGTAGGCATCT+TGG | + | chr4_3:62731470-62731489 | Msa0654550:intron | 35.0% | |
TGAGAAATAGTAGGCATCTT+GGG | + | chr4_3:62731471-62731490 | Msa0654550:intron | 35.0% | |
TTGGAACAGTAACGTTCTTA+CGG | - | chr4_3:62731523-62731542 | None:intergenic | 35.0% | |
GCCTATATATATGGTCTTTG+TGG | - | chr4_3:62731581-62731600 | None:intergenic | 35.0% | |
TCAGCATCAGCCTATATATA+TGG | - | chr4_3:62731590-62731609 | None:intergenic | 35.0% | |
CTTGAAATCAAAAGTGGTCA+AGG | - | chr4_3:62731772-62731791 | None:intergenic | 35.0% | |
!!! | CTTGACCACTTTTGATTTCA+AGG | + | chr4_3:62731770-62731789 | Msa0654550:CDS | 35.0% |
GCTAACCTTGAAATCAAAAG+TGG | - | chr4_3:62731778-62731797 | None:intergenic | 35.0% | |
! | ACTTTGGCAGTGACTAATTT+TGG | + | chr4_3:62731897-62731916 | Msa0654550:intron | 35.0% |
!!! | TTTTGGAACCATCCAACATT+TGG | + | chr4_3:62731914-62731933 | Msa0654550:intron | 35.0% |
AAACATGTGTTTGATCTTGC+AGG | + | chr4_3:62732029-62732048 | Msa0654550:intron | 35.0% | |
TTTGATCTTGCAGGAAATGA+TGG | + | chr4_3:62732038-62732057 | Msa0654550:intron | 35.0% | |
! | CACTGATGATGAAGAAATGA+AGG | - | chr4_3:62732069-62732088 | None:intergenic | 35.0% |
CTTCATTTCTTCATCATCAG+TGG | + | chr4_3:62732067-62732086 | Msa0654550:CDS | 35.0% | |
!! | GAAATTCTAGGGTTGAAGTT+TGG | - | chr4_3:62732177-62732196 | None:intergenic | 35.0% |
CTTCAACCCTAGAATTTCAA+TGG | + | chr4_3:62732179-62732198 | Msa0654550:CDS | 35.0% | |
GCAGTTTCCATTGAAATTCT+AGG | - | chr4_3:62732189-62732208 | None:intergenic | 35.0% | |
AATGAAAGAAGATTCGGGTA+CGG | - | chr4_3:62732237-62732256 | None:intergenic | 35.0% | |
CGACAAATGAAAGAAGATTC+GGG | - | chr4_3:62732242-62732261 | None:intergenic | 35.0% | |
TCAGTTAAATCAGTTGGGAT+TGG | + | chr4_3:62732269-62732288 | Msa0654550:CDS | 35.0% | |
AACCAATCATCTCATCCTTA+GGG | - | chr4_3:62732299-62732318 | None:intergenic | 35.0% | |
!! | TTGTTTTGTAGAGTTGAGTC+AGG | - | chr4_3:62732550-62732569 | None:intergenic | 35.0% |
TGTAAGGTGAAGATTGCATT+AGG | + | chr4_3:62732573-62732592 | Msa0654550:intron | 35.0% | |
! | ATTGTGCTACTACTAACAGA+TGG | + | chr4_3:62732756-62732775 | Msa0654550:intron | 35.0% |
ATGGACAAAGTTACTGTTCT+TGG | + | chr4_3:62732775-62732794 | Msa0654550:CDS | 35.0% | |
CTTGAAGAAATTGCAAGAGA+AGG | + | chr4_3:62732813-62732832 | Msa0654550:CDS | 35.0% | |
ACAGAACATGAAGAAAAACG+TGG | + | chr4_3:62732855-62732874 | Msa0654550:CDS | 35.0% | |
GAAGAAAAACGTGGAATTTG+TGG | + | chr4_3:62732864-62732883 | Msa0654550:CDS | 35.0% | |
AATTCTTCTGCAGAATTTGG+TGG | + | chr4_3:62732925-62732944 | Msa0654550:CDS | 35.0% | |
GTTCACTGTGAGAAAATCAA+AGG | + | chr4_3:62733012-62733031 | Msa0654550:CDS | 35.0% | |
TGAGAAAATCAAAGGAGTTG+TGG | + | chr4_3:62733020-62733039 | Msa0654550:CDS | 35.0% | |
CTATTTGTGCAATTTGCAGA+TGG | + | chr4_3:62733312-62733331 | Msa0654550:intron | 35.0% | |
! | GGATATGGAATTTTGCATGA+CGG | + | chr4_3:62733333-62733352 | Msa0654550:CDS | 35.0% |
!! | TGACTACGACTTTAGAGCAT+AGG | + | chr4_3:62729742-62729761 | Msa0654550:CDS | 40.0% |
TGCTAGGTTTGTAGATAGCT+AGG | + | chr4_3:62729791-62729810 | Msa0654550:intron | 40.0% | |
!!! | GTATCCAGGTTTTTTCAAGC+TGG | - | chr4_3:62729879-62729898 | None:intergenic | 40.0% |
TTCATCACGTGTACTACAGT+CGG | + | chr4_3:62730075-62730094 | Msa0654550:intron | 40.0% | |
! | CTCAAGTCAAATTTTGAGCG+AGG | + | chr4_3:62730569-62730588 | Msa0654550:intron | 40.0% |
! | AAGTCAAATTTTGAGCGAGG+TGG | + | chr4_3:62730572-62730591 | Msa0654550:intron | 40.0% |
! | AGTCAAATTTTGAGCGAGGT+GGG | + | chr4_3:62730573-62730592 | Msa0654550:intron | 40.0% |
CACTGATCCACAAATTATGC+TGG | - | chr4_3:62730700-62730719 | None:intergenic | 40.0% | |
CATCATCATCATCATCATCG+TGG | - | chr4_3:62730736-62730755 | None:intergenic | 40.0% | |
! | CTTTTGCTCAGATGCGTTTT+CGG | - | chr4_3:62731011-62731030 | None:intergenic | 40.0% |
GGCAAATAAAACGTACCTTG+AGG | + | chr4_3:62731278-62731297 | Msa0654550:intron | 40.0% | |
TAAAACGTACCTTGAGGCTT+TGG | + | chr4_3:62731284-62731303 | Msa0654550:intron | 40.0% | |
! | TTGTATTGTGGACTTTTGGG+GGG | - | chr4_3:62731384-62731403 | None:intergenic | 40.0% |
! | GTTGTATTGTGGACTTTTGG+GGG | - | chr4_3:62731385-62731404 | None:intergenic | 40.0% |
TGGAACAGTAACGTTCTTAC+GGG | - | chr4_3:62731522-62731541 | None:intergenic | 40.0% | |
GAACGTTACTGTTCCAAGTT+AGG | + | chr4_3:62731526-62731545 | Msa0654550:intron | 40.0% | |
ACTATATGTCTTACCTGCTC+AGG | - | chr4_3:62731837-62731856 | None:intergenic | 40.0% | |
TCTCCAAAAGCAGTACCTAT+TGG | - | chr4_3:62732126-62732145 | None:intergenic | 40.0% | |
AACCCTAAGGATGAGATGAT+TGG | + | chr4_3:62732294-62732313 | Msa0654550:CDS | 40.0% | |
GAACCAATCATCTCATCCTT+AGG | - | chr4_3:62732300-62732319 | None:intergenic | 40.0% | |
TCTTCCGACATGATTTCTCA+AGG | + | chr4_3:62732339-62732358 | Msa0654550:CDS | 40.0% | |
GGTTCCTTGAGAAATCATGT+CGG | - | chr4_3:62732346-62732365 | None:intergenic | 40.0% | |
GATTTCTCAAGGAACCTTTG+AGG | + | chr4_3:62732350-62732369 | Msa0654550:CDS | 40.0% | |
TCTTGAGGAAGAGAGAGTTT+AGG | - | chr4_3:62732396-62732415 | None:intergenic | 40.0% | |
TTTATGATCTCTGCCTAACG+CGG | + | chr4_3:62732597-62732616 | Msa0654550:intron | 40.0% | |
AAAAACTTAAGTCCCGCGTT+AGG | - | chr4_3:62732613-62732632 | None:intergenic | 40.0% | |
GAAATTGCAAGAGAAGGTGA+AGG | + | chr4_3:62732819-62732838 | Msa0654550:CDS | 40.0% | |
GAAAAACGTGGAATTTGTGG+TGG | + | chr4_3:62732867-62732886 | Msa0654550:CDS | 40.0% | |
TCTCACAGTGAACTCTTATG+AGG | - | chr4_3:62733005-62733024 | None:intergenic | 40.0% | |
GTGCAATTTGCAGATGGATA+TGG | + | chr4_3:62733318-62733337 | Msa0654550:intron | 40.0% | |
AAGACGTAAAAACTGAGCGT+AGG | - | chr4_3:62733378-62733397 | None:intergenic | 40.0% | |
!! | GTCGTAGTCATTTTATGGCG+TGG | - | chr4_3:62729732-62729751 | None:intergenic | 45.0% |
TGGTGTAACTATGAGCTGCA+TGG | - | chr4_3:62729904-62729923 | None:intergenic | 45.0% | |
! | GGGAGTAAGAAGAGAAGTGT+TGG | - | chr4_3:62729924-62729943 | None:intergenic | 45.0% |
! | ATGGTTTCTAGACGAGGTCT+CGG | + | chr4_3:62730634-62730653 | Msa0654550:intron | 45.0% |
ATGGACTTGACAGACTCACT+GGG | + | chr4_3:62730759-62730778 | Msa0654550:intron | 45.0% | |
TTTCACGAAGTGATGCGACT+AGG | - | chr4_3:62730853-62730872 | None:intergenic | 45.0% | |
!! | GAGCAAAAGTGTCGATGCTA+TGG | + | chr4_3:62731022-62731041 | Msa0654550:intron | 45.0% |
TATCCTTGTCCAAAGCCTCA+AGG | - | chr4_3:62731296-62731315 | None:intergenic | 45.0% | |
!! | TTGAGGCTTTGGACAAGGAT+AGG | + | chr4_3:62731295-62731314 | Msa0654550:intron | 45.0% |
!! | TGAGGCTTTGGACAAGGATA+GGG | + | chr4_3:62731296-62731315 | Msa0654550:intron | 45.0% |
GATCTTGCAGGAAATGATGG+AGG | + | chr4_3:62732041-62732060 | Msa0654550:intron | 45.0% | |
GAGTCTAACTCACTGCCAAT+AGG | + | chr4_3:62732108-62732127 | Msa0654550:CDS | 45.0% | |
!! | CTGCCAATAGGTACTGCTTT+TGG | + | chr4_3:62732120-62732139 | Msa0654550:CDS | 45.0% |
!! | AGGAACCTTTGAGGCCAAAA+AGG | + | chr4_3:62732359-62732378 | Msa0654550:CDS | 45.0% |
!! | TGCTACCTTTTTGGCCTCAA+AGG | - | chr4_3:62732367-62732386 | None:intergenic | 45.0% |
!! | AGGACGTGTTGCTACCTTTT+TGG | - | chr4_3:62732376-62732395 | None:intergenic | 45.0% |
AAGATAGAGCAATGAAGCGC+TGG | - | chr4_3:62732458-62732477 | None:intergenic | 45.0% | |
! | CTTTTGTAGTCCGGGAACAA+GGG | - | chr4_3:62732481-62732500 | None:intergenic | 45.0% |
TTATGATCTCTGCCTAACGC+GGG | + | chr4_3:62732598-62732617 | Msa0654550:intron | 45.0% | |
AGAGAAGGTGAAGGTTCTTG+AGG | + | chr4_3:62732828-62732847 | Msa0654550:CDS | 45.0% | |
! | GGAATTTTGCATGACGGTGA+AGG | + | chr4_3:62733339-62733358 | Msa0654550:CDS | 45.0% |
TGATCTTGTGCTACCTGGAC+TGG | - | chr4_3:62729843-62729862 | None:intergenic | 50.0% | |
TGAGCTGCATGGTTGTATCC+AGG | - | chr4_3:62729893-62729912 | None:intergenic | 50.0% | |
GATGGACCTAGATCGATTGC+CGG | + | chr4_3:62730474-62730493 | Msa0654550:intron | 50.0% | |
TCAACTCCGGCAATCGATCT+AGG | - | chr4_3:62730483-62730502 | None:intergenic | 50.0% | |
AGGACGATTCTTGAGCTCAC+CGG | + | chr4_3:62730516-62730535 | Msa0654550:intron | 50.0% | |
TTGCAAGTATGACAGCCCTC+CGG | - | chr4_3:62730538-62730557 | None:intergenic | 50.0% | |
! | TTTTGAGCGAGGTGGGTAAG+AGG | + | chr4_3:62730580-62730599 | Msa0654550:intron | 50.0% |
TTTCTAGACGAGGTCTCGGT+AGG | + | chr4_3:62730638-62730657 | Msa0654550:intron | 50.0% | |
! | GATGGACTTGACAGACTCAC+TGG | + | chr4_3:62730758-62730777 | Msa0654550:intron | 50.0% |
TGGACTTGACAGACTCACTG+GGG | + | chr4_3:62730760-62730779 | Msa0654550:intron | 50.0% | |
TGCTATGGAGTTCGTCTTCG+TGG | + | chr4_3:62731037-62731056 | Msa0654550:intron | 50.0% | |
!! | GTACCTTGAGGCTTTGGACA+AGG | + | chr4_3:62731290-62731309 | Msa0654550:intron | 50.0% |
TATCAGAGGGTTTCCTGAGC+AGG | + | chr4_3:62731821-62731840 | Msa0654550:CDS | 50.0% | |
! | GTTGGGATTGGTGAACCCTA+AGG | + | chr4_3:62732281-62732300 | Msa0654550:CDS | 50.0% |
GCTCTATCTTCCCTTGTTCC+CGG | + | chr4_3:62732468-62732487 | Msa0654550:CDS | 50.0% | |
! | CCTTTTGTAGTCCGGGAACA+AGG | - | chr4_3:62732482-62732501 | None:intergenic | 50.0% |
CCTTGTTCCCGGACTACAAA+AGG | + | chr4_3:62732479-62732498 | Msa0654550:CDS | 50.0% | |
GAAGGTGAAGGTTCTTGAGG+AGG | + | chr4_3:62732831-62732850 | Msa0654550:CDS | 50.0% | |
! | ATTTGGTGGTCCCTTTGACG+AGG | + | chr4_3:62732939-62732958 | Msa0654550:CDS | 50.0% |
TCTGGCAGTTCCTCGTCAAA+GGG | - | chr4_3:62732952-62732971 | None:intergenic | 50.0% | |
TTCTGGCAGTTCCTCGTCAA+AGG | - | chr4_3:62732953-62732972 | None:intergenic | 50.0% | |
! | TCTTGTGCTACCTGGACTGG+AGG | - | chr4_3:62729840-62729859 | None:intergenic | 55.0% |
ACGATTCTTGAGCTCACCGG+AGG | + | chr4_3:62730519-62730538 | Msa0654550:intron | 55.0% | |
CGATTCTTGAGCTCACCGGA+GGG | + | chr4_3:62730520-62730539 | Msa0654550:intron | 55.0% | |
! | ACTACAGAGGCGCACGCTAA+GGG | - | chr4_3:62730803-62730822 | None:intergenic | 55.0% |
! | TACTACAGAGGCGCACGCTA+AGG | - | chr4_3:62730804-62730823 | None:intergenic | 55.0% |
GTTGTTCCAGCCTCCAGTCC+AGG | + | chr4_3:62729827-62729846 | Msa0654550:intron | 60.0% | |
!! | TTGCCGGAGTTGATGCGCGA+CGG | + | chr4_3:62730490-62730509 | Msa0654550:intron | 60.0% |
CTTCCGTCGCGCATCAACTC+CGG | - | chr4_3:62730496-62730515 | None:intergenic | 60.0% | |
!! | GAGTTGATGCGCGACGGAAG+AGG | + | chr4_3:62730496-62730515 | Msa0654550:intron | 60.0% |
AGACGAGGTCTCGGTAGGAC+TGG | + | chr4_3:62730643-62730662 | Msa0654550:intron | 60.0% | |
ACAGACTCACTGGGGTGTGC+TGG | + | chr4_3:62730768-62730787 | Msa0654550:intron | 60.0% | |
! | GTGCTACCTGGACTGGAGGC+TGG | - | chr4_3:62729836-62729855 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 62729717 | 62733405 | 62729717 | ID=Msa0654550;Name=Msa0654550 |
chr4_3 | mRNA | 62729717 | 62733405 | 62729717 | ID=Msa0654550-mRNA-1;Parent=Msa0654550;Name=Msa0654550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.8|1|1|5|0|351 |
chr4_3 | exon | 62729717 | 62729796 | 62729717 | ID=Msa0654550-mRNA-1:exon:17498;Parent=Msa0654550-mRNA-1 |
chr4_3 | exon | 62731761 | 62731842 | 62731761 | ID=Msa0654550-mRNA-1:exon:17499;Parent=Msa0654550-mRNA-1 |
chr4_3 | exon | 62732051 | 62732500 | 62732051 | ID=Msa0654550-mRNA-1:exon:17500;Parent=Msa0654550-mRNA-1 |
chr4_3 | exon | 62732775 | 62733143 | 62732775 | ID=Msa0654550-mRNA-1:exon:17501;Parent=Msa0654550-mRNA-1 |
chr4_3 | exon | 62733331 | 62733405 | 62733331 | ID=Msa0654550-mRNA-1:exon:17502;Parent=Msa0654550-mRNA-1 |
chr4_3 | CDS | 62729717 | 62729796 | 62729717 | ID=Msa0654550-mRNA-1:cds;Parent=Msa0654550-mRNA-1 |
chr4_3 | CDS | 62731761 | 62731842 | 62731761 | ID=Msa0654550-mRNA-1:cds;Parent=Msa0654550-mRNA-1 |
chr4_3 | CDS | 62732051 | 62732500 | 62732051 | ID=Msa0654550-mRNA-1:cds;Parent=Msa0654550-mRNA-1 |
chr4_3 | CDS | 62732775 | 62733143 | 62732775 | ID=Msa0654550-mRNA-1:cds;Parent=Msa0654550-mRNA-1 |
chr4_3 | CDS | 62733331 | 62733405 | 62733331 | ID=Msa0654550-mRNA-1:cds;Parent=Msa0654550-mRNA-1 |
Gene Sequence |
Protein sequence |