Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654980 | XP_004504677.1 | 90.281 | 391 | 36 | 1 | 1 | 389 | 1 | 391 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654980 | sp|Q43087|PYRB2_PEA | 88.747 | 391 | 36 | 2 | 1 | 389 | 1 | 385 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0654980 | Msa0698840 | 0.877455 | 6.200701e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654980 | MtrunA17_Chr4g0052321 | 84.319 | 389 | 8 | 1 | 1 | 389 | 1 | 336 | 0.0 | 650 |
| Msa0654980 | MtrunA17_Chr5g0444701 | 73.924 | 395 | 86 | 4 | 1 | 389 | 1 | 384 | 0.0 | 569 |
| Msa0654980 | MtrunA17_Chr3g0141741 | 27.707 | 314 | 205 | 10 | 83 | 386 | 66 | 367 | 2.73e-19 | 88.6 |
| Msa0654980 | MtrunA17_Chr1g0155401 | 25.786 | 318 | 214 | 9 | 79 | 386 | 60 | 365 | 2.94e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654980 | AT3G20330.1 | 69.114 | 395 | 111 | 2 | 1 | 389 | 1 | 390 | 0.0 | 542 |
| Msa0654980 | AT3G20330.2 | 69.114 | 395 | 111 | 2 | 1 | 389 | 1 | 390 | 0.0 | 542 |
| Msa0654980 | AT1G75330.1 | 27.760 | 317 | 207 | 9 | 80 | 386 | 69 | 373 | 5.50e-17 | 82.0 |
Find 82 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCTAAAATCTGGCTTTC+AGG | 0.121468 | 4_3:-63418456 | None:intergenic |
| GTGCAAGCAATTTGTCAAAA+TGG | 0.150202 | 4_3:+63418271 | Msa0654980:CDS |
| CCGAATATATAAACCATATT+TGG | 0.195568 | 4_3:-63420202 | None:intergenic |
| ATACTTTCTAATCTTATAAT+AGG | 0.217570 | 4_3:+63420369 | Msa0654980:three_prime_UTR |
| CTTAATTATTACTATCAAAA+AGG | 0.247468 | 4_3:-63416718 | None:intergenic |
| CCAAATATGGTTTATATATT+CGG | 0.263369 | 4_3:+63420202 | Msa0654980:CDS |
| GAACACTACTCAGGCACTTT+TGG | 0.269298 | 4_3:+63419403 | Msa0654980:intron |
| AGCAATTGCTGCAGCTCTTC+TGG | 0.272850 | 4_3:-63418780 | None:intergenic |
| TACTTTAGGCAAGCCAAATA+TGG | 0.291184 | 4_3:+63420189 | Msa0654980:CDS |
| TCATAGCAAAATCTCCTATA+TGG | 0.296582 | 4_3:+63418206 | Msa0654980:CDS |
| AGAAGAGCTGCAGCAATTGC+TGG | 0.326750 | 4_3:+63418782 | Msa0654980:CDS |
| AGTAGAGGGCTCATAAAATA+AGG | 0.365049 | 4_3:-63418493 | None:intergenic |
| ATGCAAGGGCTGCTTACTTT+AGG | 0.367672 | 4_3:+63420175 | Msa0654980:CDS |
| TCAGGTTTGAACTGCAAAAC+TGG | 0.382327 | 4_3:-63416800 | None:intergenic |
| GGAAGAAAGTTCTGATTTAG+TGG | 0.385877 | 4_3:+63419856 | Msa0654980:CDS |
| AAGCTTGATGGTATTAAAGT+TGG | 0.388302 | 4_3:+63419455 | Msa0654980:CDS |
| AGGGTTGGTTTCTTCTTCAA+TGG | 0.398343 | 4_3:+63418095 | Msa0654980:intron |
| TATACAATTGAAAGAGAGAT+TGG | 0.400447 | 4_3:+63419431 | Msa0654980:CDS |
| GGTATTAAAGTTGGGCTTGT+TGG | 0.405372 | 4_3:+63419464 | Msa0654980:CDS |
| TGCAAGCAATTTGTCAAAAT+GGG | 0.420727 | 4_3:+63418272 | Msa0654980:CDS |
| TAAGATAACCCTCTAAAATC+TGG | 0.421989 | 4_3:-63418464 | None:intergenic |
| GACATCAGAAGGAGTGGATT+GGG | 0.425793 | 4_3:+63419835 | Msa0654980:CDS |
| AGCTTGATGGTATTAAAGTT+GGG | 0.431447 | 4_3:+63419456 | Msa0654980:CDS |
| TTAGGGTTTCTTAGAAATTG+TGG | 0.444516 | 4_3:+63417714 | Msa0654980:intron |
| ACCTGTGTCGGATGTTGTCC+AGG | 0.453491 | 4_3:-63418833 | None:intergenic |
| GTTTCAGTGGCAGTGCAGTC+AGG | 0.456748 | 4_3:-63416818 | None:intergenic |
| GTTTCTTAGAAATTGTGGTT+GGG | 0.456873 | 4_3:+63417719 | Msa0654980:five_prime_UTR |
| ATGCTTACTTCGTCAAGTCT+TGG | 0.461945 | 4_3:-63420037 | None:intergenic |
| CGGACGGACGGTTCGATCAC+TGG | 0.466089 | 4_3:+63419499 | Msa0654980:CDS |
| AGAGAGATTGGAAAGCTTGA+TGG | 0.470401 | 4_3:+63419443 | Msa0654980:CDS |
| GGTTTCTTAGAAATTGTGGT+TGG | 0.475108 | 4_3:+63417718 | Msa0654980:five_prime_UTR |
| CTAACACAACCCCACAAAAC+CGG | 0.475920 | 4_3:+63417743 | Msa0654980:five_prime_UTR |
| AAGTTCTGATTTAGTGGAAG+TGG | 0.483767 | 4_3:+63419862 | Msa0654980:CDS |
| CGAAAGTCTAGTTCTAGTAG+AGG | 0.483999 | 4_3:-63418508 | None:intergenic |
| CAACTCCATGTGCATTGAGC+AGG | 0.484567 | 4_3:-63418139 | None:intergenic |
| TGATTTAGTGGAAGTGGCCT+CGG | 0.485909 | 4_3:+63419868 | Msa0654980:CDS |
| TGACATCAGAAGGAGTGGAT+TGG | 0.493820 | 4_3:+63419834 | Msa0654980:CDS |
| GGCGTTCCAATAGTCAATGC+GGG | 0.494144 | 4_3:+63418803 | Msa0654980:CDS |
| TGAGTCTGCTATGAGAAGAC+TGG | 0.499266 | 4_3:+63418533 | Msa0654980:CDS |
| GAACCGTCCGTCCGTTGGCT+AGG | 0.499830 | 4_3:-63419490 | None:intergenic |
| CTTGTACTTTGCAAGCAAGT+AGG | 0.506586 | 4_3:-63419522 | None:intergenic |
| GCTAAAGGAGAGACGCTTGA+AGG | 0.514422 | 4_3:+63418603 | Msa0654980:CDS |
| CTGCACTGCCACTGAAACAC+AGG | 0.525690 | 4_3:+63416823 | Msa0654980:five_prime_UTR |
| ATGTGACAACCAAAAGCAAA+AGG | 0.527464 | 4_3:-63420315 | None:intergenic |
| AAAGACTATTTGACATCAGA+AGG | 0.528017 | 4_3:+63419824 | Msa0654980:CDS |
| CTTCTCCTGCTCAATGCACA+TGG | 0.528967 | 4_3:+63418134 | Msa0654980:CDS |
| CCCCACAAAACCGGCTTGTG+AGG | 0.530091 | 4_3:+63417752 | Msa0654980:five_prime_UTR |
| CTACTTGCTTGCAAAGTACA+AGG | 0.530311 | 4_3:+63419523 | Msa0654980:CDS |
| TGGATGTTGACGCTGATGCA+AGG | 0.535900 | 4_3:+63420160 | Msa0654980:CDS |
| TGATCGAACCGTCCGTCCGT+TGG | 0.560820 | 4_3:-63419495 | None:intergenic |
| CTATTTGACATCAGAAGGAG+TGG | 0.562247 | 4_3:+63419829 | Msa0654980:CDS |
| ACTTCGTCAAGTCTTGGAAG+AGG | 0.562949 | 4_3:-63420031 | None:intergenic |
| GATACAATAAGAACAGTTGA+GGG | 0.568220 | 4_3:+63418713 | Msa0654980:intron |
| TCTGCCCCTCTGAAAAGCAA+TGG | 0.569434 | 4_3:-63418329 | None:intergenic |
| ATATGGTTTATATATTCGGA+TGG | 0.577869 | 4_3:+63420206 | Msa0654980:CDS |
| CTTCGTCAAGTCTTGGAAGA+GGG | 0.584979 | 4_3:-63420030 | None:intergenic |
| AGATACAATAAGAACAGTTG+AGG | 0.586714 | 4_3:+63418712 | Msa0654980:intron |
| AAATTATTATAAGTATAAGA+AGG | 0.590048 | 4_3:-63416667 | None:intergenic |
| TAAAGACTCACCTCACAAGC+CGG | 0.590749 | 4_3:-63417762 | None:intergenic |
| GTGCTTCGACACTTTGAAAG+CGG | 0.594961 | 4_3:+63418752 | Msa0654980:CDS |
| GGCGATGCAAAGACATGCCG+TGG | 0.595306 | 4_3:+63420000 | Msa0654980:CDS |
| GGATGTTGACGCTGATGCAA+GGG | 0.612635 | 4_3:+63420161 | Msa0654980:CDS |
| AAGCGTCTCTCCTTTAGCCG+CGG | 0.617353 | 4_3:-63418598 | None:intergenic |
| TGTGAATCAGAATATTCTCA+AGG | 0.617585 | 4_3:+63419979 | Msa0654980:CDS |
| TTGGTGTACCTGTGTTTCAG+TGG | 0.618005 | 4_3:-63416831 | None:intergenic |
| GAGTCTGCTATGAGAAGACT+GGG | 0.620320 | 4_3:+63418534 | Msa0654980:CDS |
| TGAAACTCTTGCTTGTTGGG+TGG | 0.621861 | 4_3:+63420235 | Msa0654980:CDS |
| GCGTTCCAATAGTCAATGCG+GGG | 0.634493 | 4_3:+63418804 | Msa0654980:CDS |
| GAATGCATGCCTACCTGTGT+CGG | 0.638231 | 4_3:-63418845 | None:intergenic |
| TATGAGAAGACTGGGTGGAG+AGG | 0.641183 | 4_3:+63418542 | Msa0654980:CDS |
| TGGCGTTCCAATAGTCAATG+CGG | 0.643059 | 4_3:+63418802 | Msa0654980:CDS |
| GAAAGTCTAGTTCTAGTAGA+GGG | 0.643557 | 4_3:-63418507 | None:intergenic |
| AGACCTAGCCAACGGACGGA+CGG | 0.644006 | 4_3:+63419487 | Msa0654980:CDS |
| TCCTGGACAACATCCGACAC+AGG | 0.657570 | 4_3:+63418832 | Msa0654980:CDS |
| TGGAAGAGGGTGCATAACCA+CGG | 0.659443 | 4_3:-63420017 | None:intergenic |
| TTGGAGACCTAGCCAACGGA+CGG | 0.663036 | 4_3:+63419483 | Msa0654980:CDS |
| CTTGTTGGAGACCTAGCCAA+CGG | 0.678794 | 4_3:+63419479 | Msa0654980:CDS |
| CGTTCCAATAGTCAATGCGG+GGG | 0.688550 | 4_3:+63418805 | Msa0654980:CDS |
| ATAAACCACGTCACACTCCG+AGG | 0.690679 | 4_3:-63419885 | None:intergenic |
| AGTGGCCTCGGAGTGTGACG+TGG | 0.692222 | 4_3:+63419880 | Msa0654980:CDS |
| TGACAACCAAAAGCAAAAGG+AGG | 0.701165 | 4_3:-63420312 | None:intergenic |
| TCTGCTATGAGAAGACTGGG+TGG | 0.712126 | 4_3:+63418537 | Msa0654980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTATAAGTATAAGA+AGG | - | chr4_3:63416670-63416689 | None:intergenic | 10.0% |
| !! | AAATATTTATTTATATTGTG+CGG | - | chr4_3:63416911-63416930 | None:intergenic | 10.0% |
| !! | TTATTGAATATCTTTATTAA+AGG | + | chr4_3:63417500-63417519 | Msa0654980:intron | 10.0% |
| !! | AAAGAAAATATATTATTAGT+TGG | - | chr4_3:63417560-63417579 | None:intergenic | 10.0% |
| !! | AAAGAAAATATATTATTAGT+TGG | - | chr4_3:63417560-63417579 | None:intergenic | 10.0% |
| !! | CTTAATTATTACTATCAAAA+AGG | - | chr4_3:63416721-63416740 | None:intergenic | 15.0% |
| !!! | TGAAATTTTCATCAAATTTT+GGG | - | chr4_3:63419112-63419131 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTCATCAAATTT+TGG | - | chr4_3:63419113-63419132 | None:intergenic | 15.0% |
| !! | TTATTAATAGCTTATTAAAG+TGG | - | chr4_3:63419245-63419264 | None:intergenic | 15.0% |
| !!! | AAAATTAATTTGAGATTAAG+TGG | + | chr4_3:63419677-63419696 | Msa0654980:intron | 15.0% |
| !! | CTAATGATATTTACATTTAT+AGG | + | chr4_3:63419793-63419812 | Msa0654980:intron | 15.0% |
| !! | ATACTTTCTAATCTTATAAT+AGG | + | chr4_3:63420369-63420388 | Msa0654980:three_prime_UTR | 15.0% |
| !! | TATTACTATCAAAAAGGAAA+GGG | - | chr4_3:63416715-63416734 | None:intergenic | 20.0% |
| !! | TTATTACTATCAAAAAGGAA+AGG | - | chr4_3:63416716-63416735 | None:intergenic | 20.0% |
| !!! | TTACTAATACTATTTTGTCA+TGG | + | chr4_3:63416878-63416897 | Msa0654980:intron | 20.0% |
| !!! | TACTAATACTATTTTGTCAT+GGG | + | chr4_3:63416879-63416898 | Msa0654980:intron | 20.0% |
| !! | TCATGACAAAAATACTTATA+TGG | - | chr4_3:63416994-63417013 | None:intergenic | 20.0% |
| !! | AAAATAGATATGTAAAGCAT+TGG | - | chr4_3:63417371-63417390 | None:intergenic | 20.0% |
| !! | AAAACCTTTCATTATCAAAA+TGG | - | chr4_3:63417482-63417501 | None:intergenic | 20.0% |
| !!! | TTTTAAATACATGAACTGTT+TGG | + | chr4_3:63417650-63417669 | Msa0654980:intron | 20.0% |
| !! | AACATCAAACTTGAAATTAA+GGG | - | chr4_3:63418653-63418672 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAGAATTTCATTG+TGG | + | chr4_3:63418680-63418699 | Msa0654980:intron | 20.0% |
| !! | AGATATTATAATCCAAAACA+CGG | - | chr4_3:63418900-63418919 | None:intergenic | 20.0% |
| !!! | TGTTTTGGATTATAATATCT+TGG | + | chr4_3:63418900-63418919 | Msa0654980:intron | 20.0% |
| !! | CTATATTATGTCAAATAGAT+TGG | + | chr4_3:63418934-63418953 | Msa0654980:intron | 20.0% |
| !! | AAATAGATTGGATAAAATGT+AGG | + | chr4_3:63418946-63418965 | Msa0654980:intron | 20.0% |
| !!! | CTTTTAATATTTGCATTTCA+TGG | - | chr4_3:63419170-63419189 | None:intergenic | 20.0% |
| !! | ATGTTAGTCGTAAATAATTA+TGG | + | chr4_3:63419307-63419326 | Msa0654980:intron | 20.0% |
| !! | TGTTAGTCGTAAATAATTAT+GGG | + | chr4_3:63419308-63419327 | Msa0654980:intron | 20.0% |
| !! | GTAAATAATTATGGGATAAA+GGG | + | chr4_3:63419316-63419335 | Msa0654980:intron | 20.0% |
| !! | CCAAATATGGTTTATATATT+CGG | + | chr4_3:63420202-63420221 | Msa0654980:CDS | 20.0% |
| !! | ACAAAAAAGACAAGTATTAA+AGG | - | chr4_3:63420341-63420360 | None:intergenic | 20.0% |
| ! | ATTACTATCAAAAAGGAAAG+GGG | - | chr4_3:63416714-63416733 | None:intergenic | 25.0% |
| ! | TTGCATGAAAAAGATAGATT+TGG | - | chr4_3:63416853-63416872 | None:intergenic | 25.0% |
| ! | CTTATATGGTCAAAATCATT+TGG | - | chr4_3:63416980-63416999 | None:intergenic | 25.0% |
| !!! | AAATGGTAATGTGTGTTTTT+TGG | + | chr4_3:63417156-63417175 | Msa0654980:intron | 25.0% |
| ! | AGTATAACCATGACAAAAAA+GGG | - | chr4_3:63417457-63417476 | None:intergenic | 25.0% |
| ! | TAGTATAACCATGACAAAAA+AGG | - | chr4_3:63417458-63417477 | None:intergenic | 25.0% |
| !!! | CTAACCATTTTGATAATGAA+AGG | + | chr4_3:63417475-63417494 | Msa0654980:intron | 25.0% |
| ! | AGTTCATGTATTTAAAAGTG+GGG | - | chr4_3:63417647-63417666 | None:intergenic | 25.0% |
| ! | CAGTTCATGTATTTAAAAGT+GGG | - | chr4_3:63417648-63417667 | None:intergenic | 25.0% |
| ! | ACAGTTCATGTATTTAAAAG+TGG | - | chr4_3:63417649-63417668 | None:intergenic | 25.0% |
| ! | ACCACAATGTATTTAAAAGT+GGG | - | chr4_3:63417860-63417879 | None:intergenic | 25.0% |
| ! | AACCACAATGTATTTAAAAG+TGG | - | chr4_3:63417861-63417880 | None:intergenic | 25.0% |
| !!! | ATAGAGCATTTTGATATCTT+CGG | - | chr4_3:63418171-63418190 | None:intergenic | 25.0% |
| !! | TGATTTTATAGGTTCCATAT+AGG | - | chr4_3:63418223-63418242 | None:intergenic | 25.0% |
| ! | GCACATAAAAATCTAGAAAT+AGG | - | chr4_3:63418255-63418274 | None:intergenic | 25.0% |
| ! | CAACATCAAACTTGAAATTA+AGG | - | chr4_3:63418654-63418673 | None:intergenic | 25.0% |
| ! | GATATTATAATCCAAAACAC+GGG | - | chr4_3:63418899-63418918 | None:intergenic | 25.0% |
| !!! | CAACTAGAAGTTTTGAAAAA+TGG | - | chr4_3:63419020-63419039 | None:intergenic | 25.0% |
| ! | TAACACAAGTATATACATTC+TGG | + | chr4_3:63419064-63419083 | Msa0654980:intron | 25.0% |
| !! | AATTTTCATCAAATTTTGGG+TGG | - | chr4_3:63419109-63419128 | None:intergenic | 25.0% |
| ! | TTCAAAAACATCAAACATGA+TGG | + | chr4_3:63419128-63419147 | Msa0654980:intron | 25.0% |
| ! | TAATAGCTTATTAAAGTGGA+TGG | - | chr4_3:63419241-63419260 | None:intergenic | 25.0% |
| ! | CGTAAATAATTATGGGATAA+AGG | + | chr4_3:63419315-63419334 | Msa0654980:intron | 25.0% |
| ! | TATACAATTGAAAGAGAGAT+TGG | + | chr4_3:63419431-63419450 | Msa0654980:CDS | 25.0% |
| !! | TATGTTTGAGATTTATGAGT+AGG | + | chr4_3:63419625-63419644 | Msa0654980:intron | 25.0% |
| ! | CCGAATATATAAACCATATT+TGG | - | chr4_3:63420205-63420224 | None:intergenic | 25.0% |
| ! | ATATGGTTTATATATTCGGA+TGG | + | chr4_3:63420206-63420225 | Msa0654980:CDS | 25.0% |
| !! | TAAATCTTTTTACAAACTGC+AGG | - | chr4_3:63420418-63420437 | None:intergenic | 25.0% |
| ! | TAATACTATTTTGTCATGGG+TGG | + | chr4_3:63416882-63416901 | Msa0654980:intron | 30.0% |
| ! | AATACTATTTTGTCATGGGT+GGG | + | chr4_3:63416883-63416902 | Msa0654980:intron | 30.0% |
| GTTTATGTATAGTTCGTATC+AGG | + | chr4_3:63417057-63417076 | Msa0654980:intron | 30.0% | |
| GCATGAAAAATCTTGAATCA+TGG | + | chr4_3:63417103-63417122 | Msa0654980:intron | 30.0% | |
| !!! | GTATTGTTGTGGTTTTAGAA+TGG | + | chr4_3:63417131-63417150 | Msa0654980:intron | 30.0% |
| AATTCTATCCTTGAAACTTC+TGG | - | chr4_3:63417185-63417204 | None:intergenic | 30.0% | |
| ! | TCTTTTGCTTCTTGCTTTAT+TGG | + | chr4_3:63417231-63417250 | Msa0654980:intron | 30.0% |
| TGTCTAGGTCATAAATTGTT+TGG | + | chr4_3:63417254-63417273 | Msa0654980:intron | 30.0% | |
| TAGGTCATAAATTGTTTGGA+GGG | + | chr4_3:63417258-63417277 | Msa0654980:intron | 30.0% | |
| ! | AAATGGTGTCAAAGTAAAAC+TGG | - | chr4_3:63417420-63417439 | None:intergenic | 30.0% |
| TAAAGGATCAATGAACTGTT+TGG | + | chr4_3:63417517-63417536 | Msa0654980:intron | 30.0% | |
| TTAGGGTTTCTTAGAAATTG+TGG | + | chr4_3:63417581-63417600 | Msa0654980:intron | 30.0% | |
| GTTTCTTAGAAATTGTGGTT+GGG | + | chr4_3:63417586-63417605 | Msa0654980:intron | 30.0% | |
| GTTCATGTATTTAAAAGTGG+GGG | - | chr4_3:63417646-63417665 | None:intergenic | 30.0% | |
| TTAGGGTTTCTTAGAAATTG+TGG | + | chr4_3:63417581-63417600 | Msa0654980:intron | 30.0% | |
| GTTTCTTAGAAATTGTGGTT+GGG | + | chr4_3:63417586-63417605 | Msa0654980:intron | 30.0% | |
| TTAGGGTTTCTTAGAAATTG+TGG | + | chr4_3:63417581-63417600 | Msa0654980:intron | 30.0% | |
| GTTTCTTAGAAATTGTGGTT+GGG | + | chr4_3:63417586-63417605 | Msa0654980:intron | 30.0% | |
| CACAATGTATTTAAAAGTGG+GGG | - | chr4_3:63417858-63417877 | None:intergenic | 30.0% | |
| CCACAATGTATTTAAAAGTG+GGG | - | chr4_3:63417859-63417878 | None:intergenic | 30.0% | |
| CATTGTGGTTAAATACATTG+TGG | + | chr4_3:63417871-63417890 | Msa0654980:intron | 30.0% | |
| TGATACCATCTTAGAAATTG+TGG | + | chr4_3:63417969-63417988 | Msa0654980:intron | 30.0% | |
| TGACAATGTGTTTAAAAGTG+GGG | - | chr4_3:63418043-63418062 | None:intergenic | 30.0% | |
| CTGACAATGTGTTTAAAAGT+GGG | - | chr4_3:63418044-63418063 | None:intergenic | 30.0% | |
| TCATAGCAAAATCTCCTATA+TGG | + | chr4_3:63418206-63418225 | Msa0654980:CDS | 30.0% | |
| !!! | GGATAGCATGTTGATTTTAT+AGG | - | chr4_3:63418234-63418253 | None:intergenic | 30.0% |
| TGCAAGCAATTTGTCAAAAT+GGG | + | chr4_3:63418272-63418291 | Msa0654980:CDS | 30.0% | |
| !! | AATGGATTCTATCTTTTTGC+CGG | - | chr4_3:63418314-63418333 | None:intergenic | 30.0% |
| !! | TAAGATAACCCTCTAAAATC+TGG | - | chr4_3:63418467-63418486 | None:intergenic | 30.0% |
| AGATACAATAAGAACAGTTG+AGG | + | chr4_3:63418712-63418731 | Msa0654980:intron | 30.0% | |
| GATACAATAAGAACAGTTGA+GGG | + | chr4_3:63418713-63418732 | Msa0654980:intron | 30.0% | |
| ! | CAAAACTTCTAGTTGTATCA+CGG | + | chr4_3:63419025-63419044 | Msa0654980:intron | 30.0% |
| ! | ACAAGTTCAAGCTAACATTT+TGG | - | chr4_3:63419377-63419396 | None:intergenic | 30.0% |
| !! | TGTATTTTTGAACACTACTC+AGG | + | chr4_3:63419394-63419413 | Msa0654980:intron | 30.0% |
| ! | AAGCTTGATGGTATTAAAGT+TGG | + | chr4_3:63419455-63419474 | Msa0654980:CDS | 30.0% |
| ! | AGCTTGATGGTATTAAAGTT+GGG | + | chr4_3:63419456-63419475 | Msa0654980:CDS | 30.0% |
| TGTGGTAAAAATGAAGGTAA+TGG | + | chr4_3:63419574-63419593 | Msa0654980:intron | 30.0% | |
| AAAGACTATTTGACATCAGA+AGG | + | chr4_3:63419824-63419843 | Msa0654980:CDS | 30.0% | |
| CGTATTCAAAAAGAACGATT+TGG | + | chr4_3:63419914-63419933 | Msa0654980:CDS | 30.0% | |
| TGTGAATCAGAATATTCTCA+AGG | + | chr4_3:63419979-63419998 | Msa0654980:CDS | 30.0% | |
| AGTTGTAAATCACGTAAACT+CGG | - | chr4_3:63420113-63420132 | None:intergenic | 30.0% | |
| GTTTACGTGATTTACAACTT+TGG | + | chr4_3:63420114-63420133 | Msa0654980:intron | 30.0% | |
| !!! | ATTTTGAAACTCTTGCTTGT+TGG | + | chr4_3:63420231-63420250 | Msa0654980:CDS | 30.0% |
| !!! | TTTTGAAACTCTTGCTTGTT+GGG | + | chr4_3:63420232-63420251 | Msa0654980:CDS | 30.0% |
| ! | TAGGTTTTACAATGAGAAAG+AGG | + | chr4_3:63420388-63420407 | Msa0654980:three_prime_UTR | 30.0% |
| GTCATGATTGTGACCAAATA+TGG | + | chr4_3:63417007-63417026 | Msa0654980:intron | 35.0% | |
| TGTATAGTTCGTATCAGGAT+CGG | + | chr4_3:63417062-63417081 | Msa0654980:intron | 35.0% | |
| ! | TCATGGTTTGAGTATTGTTG+TGG | + | chr4_3:63417120-63417139 | Msa0654980:intron | 35.0% |
| ! | TTCTTGCTTTATTGGTGTCT+AGG | + | chr4_3:63417239-63417258 | Msa0654980:intron | 35.0% |
| CTAGGTCATAAATTGTTTGG+AGG | + | chr4_3:63417257-63417276 | Msa0654980:intron | 35.0% | |
| !! | ACTGGAAAGCATTCAAGTAA+AGG | - | chr4_3:63417402-63417421 | None:intergenic | 35.0% |
| GGGAAAGGAAAGTTTCAAAA+TGG | - | chr4_3:63417437-63417456 | None:intergenic | 35.0% | |
| !!! | TTCCTTTCCCTTTTTTGTCA+TGG | + | chr4_3:63417447-63417466 | Msa0654980:intron | 35.0% |
| AACCATGACAAAAAAGGGAA+AGG | - | chr4_3:63417452-63417471 | None:intergenic | 35.0% | |
| GGTTTCTTAGAAATTGTGGT+TGG | + | chr4_3:63417585-63417604 | Msa0654980:intron | 35.0% | |
| GGTTTCTTAGAAATTGTGGT+TGG | + | chr4_3:63417585-63417604 | Msa0654980:intron | 35.0% | |
| TTGTGAGGTGAGTCTTTATT+AGG | + | chr4_3:63417767-63417786 | Msa0654980:intron | 35.0% | |
| TGTGAGGTGAGTCTTTATTA+GGG | + | chr4_3:63417768-63417787 | Msa0654980:intron | 35.0% | |
| GGTTTCTTAGAAATTGTGGT+TGG | + | chr4_3:63417585-63417604 | Msa0654980:intron | 35.0% | |
| !! | CCCCACTTTTAAATACATTG+TGG | + | chr4_3:63417856-63417875 | Msa0654980:intron | 35.0% |
| ACCATCTTAGAAATTGTGGT+TGG | + | chr4_3:63417973-63417992 | Msa0654980:intron | 35.0% | |
| CCATCTTAGAAATTGTGGTT+GGG | + | chr4_3:63417974-63417993 | Msa0654980:intron | 35.0% | |
| GACAATGTGTTTAAAAGTGG+GGG | - | chr4_3:63418042-63418061 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTAAAAG+TGG | - | chr4_3:63418045-63418064 | None:intergenic | 35.0% | |
| !! | CCACTTTTAAACACATTGTC+AGG | + | chr4_3:63418042-63418061 | Msa0654980:intron | 35.0% |
| GTGCAAGCAATTTGTCAAAA+TGG | + | chr4_3:63418271-63418290 | Msa0654980:CDS | 35.0% | |
| GGGACAAAGTGAAAAAATTC+CGG | + | chr4_3:63418292-63418311 | Msa0654980:CDS | 35.0% | |
| !! | TAGAATCCATTGCTTTTCAG+AGG | + | chr4_3:63418323-63418342 | Msa0654980:CDS | 35.0% |
| !! | AGAATCCATTGCTTTTCAGA+GGG | + | chr4_3:63418324-63418343 | Msa0654980:CDS | 35.0% |
| ! | ATCTCGCGCAACTTTAAAAA+TGG | - | chr4_3:63418412-63418431 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTTGCGCGAGATA+TGG | + | chr4_3:63418413-63418432 | Msa0654980:CDS | 35.0% |
| AGTAGAGGGCTCATAAAATA+AGG | - | chr4_3:63418496-63418515 | None:intergenic | 35.0% | |
| !! | GAAAGTCTAGTTCTAGTAGA+GGG | - | chr4_3:63418510-63418529 | None:intergenic | 35.0% |
| ! | CTGCAAGATGAAACTGATTT+AGG | + | chr4_3:63418974-63418993 | Msa0654980:intron | 35.0% |
| ! | CATGATGGAGATCAAAATAG+AGG | + | chr4_3:63419143-63419162 | Msa0654980:intron | 35.0% |
| !! | TTATTTTGTCTCTCCAGATG+TGG | + | chr4_3:63419556-63419575 | Msa0654980:CDS | 35.0% |
| TCCAGATGTGGTAAAAATGA+AGG | + | chr4_3:63419568-63419587 | Msa0654980:CDS | 35.0% | |
| !! | ACCTTCATTTTTACCACATC+TGG | - | chr4_3:63419572-63419591 | None:intergenic | 35.0% |
| TTGAGATTTATGAGTAGGCT+TGG | + | chr4_3:63419630-63419649 | Msa0654980:intron | 35.0% | |
| ! | GGAAGAAAGTTCTGATTTAG+TGG | + | chr4_3:63419856-63419875 | Msa0654980:CDS | 35.0% |
| ! | AAGTTCTGATTTAGTGGAAG+TGG | + | chr4_3:63419862-63419881 | Msa0654980:CDS | 35.0% |
| GACCTTTATGAAAAAGCTAG+AGG | + | chr4_3:63419947-63419966 | Msa0654980:CDS | 35.0% | |
| !!! | TGCCTCTAGCTTTTTCATAA+AGG | - | chr4_3:63419952-63419971 | None:intergenic | 35.0% |
| !!! | TATTTTGATGCAGATCACTG+TGG | + | chr4_3:63420140-63420159 | Msa0654980:intron | 35.0% |
| TACTTTAGGCAAGCCAAATA+TGG | + | chr4_3:63420189-63420208 | Msa0654980:CDS | 35.0% | |
| !! | GCATTTTGAAGATGAATTGC+AGG | - | chr4_3:63420265-63420284 | None:intergenic | 35.0% |
| ! | ATTGTACCTCCTTTTGCTTT+TGG | + | chr4_3:63420306-63420325 | Msa0654980:three_prime_UTR | 35.0% |
| ATGTGACAACCAAAAGCAAA+AGG | - | chr4_3:63420318-63420337 | None:intergenic | 35.0% | |
| TCAGGTTTGAACTGCAAAAC+TGG | - | chr4_3:63416803-63416822 | None:intergenic | 40.0% | |
| TCACGCAGTTACTCCATATT+TGG | - | chr4_3:63417023-63417042 | None:intergenic | 40.0% | |
| GTATCAGGATCGGACAAAAT+TGG | + | chr4_3:63417072-63417091 | Msa0654980:intron | 40.0% | |
| !!! | GTGGTTTTAGAATGGCGAAA+TGG | + | chr4_3:63417139-63417158 | Msa0654980:intron | 40.0% |
| TTTGGTTGCCAGAAGTTTCA+AGG | + | chr4_3:63417174-63417193 | Msa0654980:intron | 40.0% | |
| TCTGATGCAGAGACAATTTG+TGG | + | chr4_3:63417206-63417225 | Msa0654980:intron | 40.0% | |
| CTGATGCAGAGACAATTTGT+GGG | + | chr4_3:63417207-63417226 | Msa0654980:intron | 40.0% | |
| GGCTTTCTCAAACTCATTTG+TGG | + | chr4_3:63417279-63417298 | Msa0654980:intron | 40.0% | |
| CATTGTGGAAACCTGATAAC+AGG | + | chr4_3:63417886-63417905 | Msa0654980:intron | 40.0% | |
| GATTGTGGAAACCTGATAAC+AGG | + | chr4_3:63417919-63417938 | Msa0654980:intron | 40.0% | |
| ! | CCCAACCACAATTTCTAAGA+TGG | - | chr4_3:63417589-63417608 | None:intergenic | 40.0% |
| !! | AGGGTTGGTTTCTTCTTCAA+TGG | + | chr4_3:63418095-63418114 | Msa0654980:intron | 40.0% |
| !! | GAATCCATTGCTTTTCAGAG+GGG | + | chr4_3:63418325-63418344 | Msa0654980:CDS | 40.0% |
| ! | TCCTGAAAGCCAGATTTTAG+AGG | + | chr4_3:63418455-63418474 | Msa0654980:CDS | 40.0% |
| ! | CCTGAAAGCCAGATTTTAGA+GGG | + | chr4_3:63418456-63418475 | Msa0654980:CDS | 40.0% |
| !! | CGAAAGTCTAGTTCTAGTAG+AGG | - | chr4_3:63418511-63418530 | None:intergenic | 40.0% |
| AATCCAAAACACGGGAACTT+TGG | - | chr4_3:63418891-63418910 | None:intergenic | 40.0% | |
| !! | TTGTTTCTGCTATGCTTGCT+TGG | + | chr4_3:63419205-63419224 | Msa0654980:intron | 40.0% |
| ! | CAAAGGATGAATGAGGGTAT+TGG | - | chr4_3:63419270-63419289 | None:intergenic | 40.0% |
| AAACATTTGACCAAGCGCAA+AGG | - | chr4_3:63419287-63419306 | None:intergenic | 40.0% | |
| AGAGAGATTGGAAAGCTTGA+TGG | + | chr4_3:63419443-63419462 | Msa0654980:CDS | 40.0% | |
| GGTATTAAAGTTGGGCTTGT+TGG | + | chr4_3:63419464-63419483 | Msa0654980:CDS | 40.0% | |
| CTTGTACTTTGCAAGCAAGT+AGG | - | chr4_3:63419525-63419544 | None:intergenic | 40.0% | |
| CTACTTGCTTGCAAAGTACA+AGG | + | chr4_3:63419523-63419542 | Msa0654980:CDS | 40.0% | |
| !! | GCTTGGTGTGAGAAAAGAAT+TGG | + | chr4_3:63419647-63419666 | Msa0654980:intron | 40.0% |
| TGTGCGTTAGCGATACAAAT+GGG | - | chr4_3:63419759-63419778 | None:intergenic | 40.0% | |
| TTGTGCGTTAGCGATACAAA+TGG | - | chr4_3:63419760-63419779 | None:intergenic | 40.0% | |
| CTATTTGACATCAGAAGGAG+TGG | + | chr4_3:63419829-63419848 | Msa0654980:CDS | 40.0% | |
| ATGCTTACTTCGTCAAGTCT+TGG | - | chr4_3:63420040-63420059 | None:intergenic | 40.0% | |
| ! | TCAAATGTTGTGACTTGTGC+AGG | + | chr4_3:63420066-63420085 | Msa0654980:intron | 40.0% |
| TGACAACCAAAAGCAAAAGG+AGG | - | chr4_3:63420315-63420334 | None:intergenic | 40.0% | |
| TTGGTGTACCTGTGTTTCAG+TGG | - | chr4_3:63416834-63416853 | None:intergenic | 45.0% | |
| !! | TCACAAGCCGGTTTTGTGTT+AGG | - | chr4_3:63417612-63417631 | None:intergenic | 45.0% |
| !! | TAACACAAAACCGGCTTGTG+AGG | + | chr4_3:63417611-63417630 | Msa0654980:intron | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | + | chr4_3:63417743-63417762 | Msa0654980:five_prime_UTR | 45.0% | |
| TAAAGACTCACCTCACAAGC+CGG | - | chr4_3:63417765-63417784 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr4_3:63417743-63417762 | Msa0654980:five_prime_UTR | 45.0% | |
| TGTGGAAACCTGATAACAGG+TGG | + | chr4_3:63417889-63417908 | Msa0654980:intron | 45.0% | |
| TCAGGTTTCCACAATCCGTT+GGG | - | chr4_3:63417915-63417934 | None:intergenic | 45.0% | |
| ATCAGGTTTCCACAATCCGT+TGG | - | chr4_3:63417916-63417935 | None:intergenic | 45.0% | |
| TGTGGAAACCTGATAACAGG+TGG | + | chr4_3:63417889-63417908 | Msa0654980:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr4_3:63417743-63417762 | Msa0654980:five_prime_UTR | 45.0% | |
| ! | TTAAGAGTCCCACATCGGTT+AGG | - | chr4_3:63418074-63418093 | None:intergenic | 45.0% |
| !! | CCCTCTAAAATCTGGCTTTC+AGG | - | chr4_3:63418459-63418478 | None:intergenic | 45.0% |
| TGAGTCTGCTATGAGAAGAC+TGG | + | chr4_3:63418533-63418552 | Msa0654980:CDS | 45.0% | |
| GAGTCTGCTATGAGAAGACT+GGG | + | chr4_3:63418534-63418553 | Msa0654980:CDS | 45.0% | |
| !! | GGGTGGAGAGGTTTTAACAA+CGG | + | chr4_3:63418554-63418573 | Msa0654980:CDS | 45.0% |
| ! | TGCTAGAGAATTTTCGTCCG+CGG | + | chr4_3:63418581-63418600 | Msa0654980:CDS | 45.0% |
| ! | GTGCTTCGACACTTTGAAAG+CGG | + | chr4_3:63418752-63418771 | Msa0654980:CDS | 45.0% |
| TGGCGTTCCAATAGTCAATG+CGG | + | chr4_3:63418802-63418821 | Msa0654980:CDS | 45.0% | |
| GGTTGCAGTAGAATCCAACA+TGG | - | chr4_3:63418870-63418889 | None:intergenic | 45.0% | |
| ! | CAACCAAAGTTCCCGTGTTT+TGG | + | chr4_3:63418885-63418904 | Msa0654980:intron | 45.0% |
| CAAGCGCAAAGGATGAATGA+GGG | - | chr4_3:63419276-63419295 | None:intergenic | 45.0% | |
| ! | GAACACTACTCAGGCACTTT+TGG | + | chr4_3:63419403-63419422 | Msa0654980:intron | 45.0% |
| CGTTAGCGATACAAATGGGA+AGG | - | chr4_3:63419755-63419774 | None:intergenic | 45.0% | |
| GTATCGCTAACGCACAACAT+TGG | + | chr4_3:63419763-63419782 | Msa0654980:intron | 45.0% | |
| TGACATCAGAAGGAGTGGAT+TGG | + | chr4_3:63419834-63419853 | Msa0654980:CDS | 45.0% | |
| ! | GACATCAGAAGGAGTGGATT+GGG | + | chr4_3:63419835-63419854 | Msa0654980:CDS | 45.0% |
| TGATTTAGTGGAAGTGGCCT+CGG | + | chr4_3:63419868-63419887 | Msa0654980:CDS | 45.0% | |
| CTTCGTCAAGTCTTGGAAGA+GGG | - | chr4_3:63420033-63420052 | None:intergenic | 45.0% | |
| ACTTCGTCAAGTCTTGGAAG+AGG | - | chr4_3:63420034-63420053 | None:intergenic | 45.0% | |
| ATGCAAGGGCTGCTTACTTT+AGG | + | chr4_3:63420175-63420194 | Msa0654980:CDS | 45.0% | |
| ! | TGAAACTCTTGCTTGTTGGG+TGG | + | chr4_3:63420235-63420254 | Msa0654980:CDS | 45.0% |
| !!! | TAAAATAATTAAATGTATTT+TGG | + | chr4_3:63416930-63416949 | Msa0654980:intron | 5.0% |
| !!! | AATAATATATTTTCTTTATT+AGG | + | chr4_3:63417563-63417582 | Msa0654980:intron | 5.0% |
| !!! | ATAATATATTTTCTTTATTA+GGG | + | chr4_3:63417564-63417583 | Msa0654980:intron | 5.0% |
| !!! | AATAATATATTTTCTTTATT+AGG | + | chr4_3:63417563-63417582 | Msa0654980:intron | 5.0% |
| !!! | ATAATATATTTTCTTTATTA+GGG | + | chr4_3:63417564-63417583 | Msa0654980:intron | 5.0% |
| GGATCGGACAAAATTGGCGA+CGG | + | chr4_3:63417078-63417097 | Msa0654980:intron | 50.0% | |
| GGTTGGGCCTAACACAAAAC+CGG | + | chr4_3:63417602-63417621 | Msa0654980:intron | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr4_3:63417745-63417764 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_3:63417615-63417634 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr4_3:63417745-63417764 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_3:63417615-63417634 | None:intergenic | 50.0% |
| AGCCTACTCCAAGATCCGTT+GGG | - | chr4_3:63417948-63417967 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr4_3:63417745-63417764 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_3:63417615-63417634 | None:intergenic | 50.0% |
| ACCGATGTGGGACTCTTAAC+AGG | + | chr4_3:63418075-63418094 | Msa0654980:intron | 50.0% | |
| CCCTGTTAAGAGTCCCACAT+CGG | - | chr4_3:63418079-63418098 | None:intergenic | 50.0% | |
| CCGATGTGGGACTCTTAACA+GGG | + | chr4_3:63418076-63418095 | Msa0654980:intron | 50.0% | |
| TGTGGGACTCTTAACAGGGT+TGG | + | chr4_3:63418080-63418099 | Msa0654980:intron | 50.0% | |
| CTTCTCCTGCTCAATGCACA+TGG | + | chr4_3:63418134-63418153 | Msa0654980:CDS | 50.0% | |
| CAACTCCATGTGCATTGAGC+AGG | - | chr4_3:63418142-63418161 | None:intergenic | 50.0% | |
| ! | TCTGCCCCTCTGAAAAGCAA+TGG | - | chr4_3:63418332-63418351 | None:intergenic | 50.0% |
| TCTGCTATGAGAAGACTGGG+TGG | + | chr4_3:63418537-63418556 | Msa0654980:CDS | 50.0% | |
| TATGAGAAGACTGGGTGGAG+AGG | + | chr4_3:63418542-63418561 | Msa0654980:CDS | 50.0% | |
| ! | GAATTTTCGTCCGCGGCTAA+AGG | + | chr4_3:63418588-63418607 | Msa0654980:CDS | 50.0% |
| GCTAAAGGAGAGACGCTTGA+AGG | + | chr4_3:63418603-63418622 | Msa0654980:CDS | 50.0% | |
| AGCAATTGCTGCAGCTCTTC+TGG | - | chr4_3:63418783-63418802 | None:intergenic | 50.0% | |
| AGAAGAGCTGCAGCAATTGC+TGG | + | chr4_3:63418782-63418801 | Msa0654980:CDS | 50.0% | |
| GGCGTTCCAATAGTCAATGC+GGG | + | chr4_3:63418803-63418822 | Msa0654980:CDS | 50.0% | |
| GCGTTCCAATAGTCAATGCG+GGG | + | chr4_3:63418804-63418823 | Msa0654980:CDS | 50.0% | |
| CGTTCCAATAGTCAATGCGG+GGG | + | chr4_3:63418805-63418824 | Msa0654980:CDS | 50.0% | |
| GAATGCATGCCTACCTGTGT+CGG | - | chr4_3:63418848-63418867 | None:intergenic | 50.0% | |
| GGTAGGCATGCATTCCATGT+TGG | + | chr4_3:63418853-63418872 | Msa0654980:intron | 50.0% | |
| CCAAGCGCAAAGGATGAATG+AGG | - | chr4_3:63419277-63419296 | None:intergenic | 50.0% | |
| CCTCATTCATCCTTTGCGCT+TGG | + | chr4_3:63419274-63419293 | Msa0654980:intron | 50.0% | |
| CTTGTTGGAGACCTAGCCAA+CGG | + | chr4_3:63419479-63419498 | Msa0654980:CDS | 50.0% | |
| ATAAACCACGTCACACTCCG+AGG | - | chr4_3:63419888-63419907 | None:intergenic | 50.0% | |
| ! | TGGAAGAGGGTGCATAACCA+CGG | - | chr4_3:63420020-63420039 | None:intergenic | 50.0% |
| TGGATGTTGACGCTGATGCA+AGG | + | chr4_3:63420160-63420179 | Msa0654980:CDS | 50.0% | |
| GGATGTTGACGCTGATGCAA+GGG | + | chr4_3:63420161-63420180 | Msa0654980:CDS | 50.0% | |
| GTTTCAGTGGCAGTGCAGTC+AGG | - | chr4_3:63416821-63416840 | None:intergenic | 55.0% | |
| CTGCACTGCCACTGAAACAC+AGG | + | chr4_3:63416823-63416842 | Msa0654980:five_prime_UTR | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_3:63417616-63417635 | Msa0654980:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr4_3:63417624-63417643 | None:intergenic | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_3:63417614-63417633 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_3:63417616-63417635 | None:intergenic | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_3:63417614-63417633 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_3:63417616-63417635 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_3:63417616-63417635 | Msa0654980:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr4_3:63417624-63417643 | None:intergenic | 55.0% | |
| CCTGATAACAGGTGGCCCAA+CGG | + | chr4_3:63417897-63417916 | Msa0654980:intron | 55.0% | |
| CCTGATAACAGGTGGCCCAA+CGG | + | chr4_3:63417897-63417916 | Msa0654980:intron | 55.0% | |
| GAGCCTACTCCAAGATCCGT+TGG | - | chr4_3:63417949-63417968 | None:intergenic | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_3:63417614-63417633 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_3:63417616-63417635 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_3:63417616-63417635 | Msa0654980:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr4_3:63417624-63417643 | None:intergenic | 55.0% | |
| AGGCCATCTCCTAACCGATG+TGG | + | chr4_3:63418062-63418081 | Msa0654980:intron | 55.0% | |
| GGCCATCTCCTAACCGATGT+GGG | + | chr4_3:63418063-63418082 | Msa0654980:intron | 55.0% | |
| ! | GTCCCACATCGGTTAGGAGA+TGG | - | chr4_3:63418068-63418087 | None:intergenic | 55.0% |
| AAGCGTCTCTCCTTTAGCCG+CGG | - | chr4_3:63418601-63418620 | None:intergenic | 55.0% | |
| !! | CCATCCCCCGCATTGACTAT+TGG | - | chr4_3:63418812-63418831 | None:intergenic | 55.0% |
| CCAATAGTCAATGCGGGGGA+TGG | + | chr4_3:63418809-63418828 | Msa0654980:CDS | 55.0% | |
| TCCTGGACAACATCCGACAC+AGG | + | chr4_3:63418832-63418851 | Msa0654980:CDS | 55.0% | |
| ACCTGTGTCGGATGTTGTCC+AGG | - | chr4_3:63418836-63418855 | None:intergenic | 55.0% | |
| GGACAACATCCGACACAGGT+AGG | + | chr4_3:63418836-63418855 | Msa0654980:intron | 55.0% | |
| TTGGAGACCTAGCCAACGGA+CGG | + | chr4_3:63419483-63419502 | Msa0654980:CDS | 55.0% | |
| ! | TGACTTGTGCAGGTCTCGCT+AGG | + | chr4_3:63420076-63420095 | Msa0654980:intron | 55.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_3:63417752-63417771 | Msa0654980:five_prime_UTR | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_3:63417752-63417771 | Msa0654980:five_prime_UTR | 60.0% |
| CCGTTGGGCCACCTGTTATC+AGG | - | chr4_3:63417900-63417919 | None:intergenic | 60.0% | |
| !! | ACAGGTGGCCCAACGGATTG+TGG | + | chr4_3:63417904-63417923 | Msa0654980:intron | 60.0% |
| CCGTTGGGCCACCTGTTATC+AGG | - | chr4_3:63417900-63417919 | None:intergenic | 60.0% | |
| ACAGGTGGCCCAACGGATCT+TGG | + | chr4_3:63417937-63417956 | Msa0654980:intron | 60.0% | |
| GGCCCAACGGATCTTGGAGT+AGG | + | chr4_3:63417943-63417962 | Msa0654980:intron | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_3:63417752-63417771 | Msa0654980:five_prime_UTR | 60.0% |
| AGACCTAGCCAACGGACGGA+CGG | + | chr4_3:63419487-63419506 | Msa0654980:CDS | 60.0% | |
| TGATCGAACCGTCCGTCCGT+TGG | - | chr4_3:63419498-63419517 | None:intergenic | 60.0% | |
| GGCGATGCAAAGACATGCCG+TGG | + | chr4_3:63420000-63420019 | Msa0654980:CDS | 60.0% | |
| GTCAATGCGGGGGATGGTCC+TGG | + | chr4_3:63418815-63418834 | Msa0654980:CDS | 65.0% | |
| ! | GAACCGTCCGTCCGTTGGCT+AGG | - | chr4_3:63419493-63419512 | None:intergenic | 65.0% |
| CGGACGGACGGTTCGATCAC+TGG | + | chr4_3:63419499-63419518 | Msa0654980:CDS | 65.0% | |
| AGTGGCCTCGGAGTGTGACG+TGG | + | chr4_3:63419880-63419899 | Msa0654980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 63416660 | 63420453 | 63416660 | ID=Msa0654980;Name=Msa0654980 |
| chr4_3 | mRNA | 63416660 | 63420453 | 63416660 | ID=Msa0654980-mRNA-1;Parent=Msa0654980;Name=Msa0654980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|0.66|0.57|7|193|389 |
| chr4_3 | exon | 63416660 | 63416844 | 63416660 | ID=Msa0654980-mRNA-1:exon:17814;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63417718 | 63417773 | 63417718 | ID=Msa0654980-mRNA-1:exon:17815;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63418097 | 63418624 | 63418097 | ID=Msa0654980-mRNA-1:exon:17816;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63418714 | 63418853 | 63418714 | ID=Msa0654980-mRNA-1:exon:17817;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63419416 | 63419589 | 63419416 | ID=Msa0654980-mRNA-1:exon:17818;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63419815 | 63420051 | 63419815 | ID=Msa0654980-mRNA-1:exon:17819;Parent=Msa0654980-mRNA-1 |
| chr4_3 | exon | 63420153 | 63420453 | 63420153 | ID=Msa0654980-mRNA-1:exon:17820;Parent=Msa0654980-mRNA-1 |
| chr4_3 | five_prime_UTR | 63416660 | 63416844 | 63416660 | ID=Msa0654980-mRNA-1:five_prime_utr;Parent=Msa0654980-mRNA-1 |
| chr4_3 | five_prime_UTR | 63417718 | 63417773 | 63417718 | ID=Msa0654980-mRNA-1:five_prime_utr;Parent=Msa0654980-mRNA-1 |
| chr4_3 | five_prime_UTR | 63418097 | 63418113 | 63418097 | ID=Msa0654980-mRNA-1:five_prime_utr;Parent=Msa0654980-mRNA-1 |
| chr4_3 | CDS | 63418114 | 63418624 | 63418114 | ID=Msa0654980-mRNA-1:cds;Parent=Msa0654980-mRNA-1 |
| chr4_3 | CDS | 63418714 | 63418853 | 63418714 | ID=Msa0654980-mRNA-1:cds;Parent=Msa0654980-mRNA-1 |
| chr4_3 | CDS | 63419416 | 63419589 | 63419416 | ID=Msa0654980-mRNA-1:cds;Parent=Msa0654980-mRNA-1 |
| chr4_3 | CDS | 63419815 | 63420051 | 63419815 | ID=Msa0654980-mRNA-1:cds;Parent=Msa0654980-mRNA-1 |
| chr4_3 | CDS | 63420153 | 63420260 | 63420153 | ID=Msa0654980-mRNA-1:cds;Parent=Msa0654980-mRNA-1 |
| chr4_3 | three_prime_UTR | 63420261 | 63420453 | 63420261 | ID=Msa0654980-mRNA-1:three_prime_utr;Parent=Msa0654980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
