Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698840 | XP_003608512.2 | 94.885 | 391 | 18 | 1 | 1 | 389 | 1 | 391 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698840 | sp|Q43087|PYRB2_PEA | 89.003 | 391 | 35 | 2 | 1 | 389 | 1 | 385 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698840 | B9V281 | 94.885 | 391 | 18 | 1 | 1 | 389 | 1 | 391 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0654980 | Msa0698840 | 0.877455 | 6.200701e-69 | -8.615850e-47 |
| Msa0698840 | Msa0729510 | 0.800946 | 1.135255e-48 | -8.615850e-47 |
| Msa0698840 | Msa1151910 | 0.800364 | 1.492204e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698840 | MtrunA17_Chr4g0052321 | 84.319 | 389 | 8 | 1 | 1 | 389 | 1 | 336 | 0.0 | 650 |
| Msa0698840 | MtrunA17_Chr5g0444701 | 73.924 | 395 | 86 | 4 | 1 | 389 | 1 | 384 | 0.0 | 569 |
| Msa0698840 | MtrunA17_Chr3g0141741 | 27.707 | 314 | 205 | 10 | 83 | 386 | 66 | 367 | 2.84e-19 | 88.6 |
| Msa0698840 | MtrunA17_Chr1g0155401 | 25.786 | 318 | 214 | 9 | 79 | 386 | 60 | 365 | 2.86e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698840 | AT3G20330.1 | 69.114 | 395 | 111 | 2 | 1 | 389 | 1 | 390 | 0.0 | 542 |
| Msa0698840 | AT3G20330.2 | 69.114 | 395 | 111 | 2 | 1 | 389 | 1 | 390 | 0.0 | 542 |
| Msa0698840 | AT1G75330.1 | 27.760 | 317 | 207 | 9 | 80 | 386 | 69 | 373 | 5.76e-17 | 82.0 |
Find 81 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCTAAAATCTGGCTTTC+AGG | 0.121468 | 4_4:-69260113 | None:intergenic |
| GTGCAAGCAATTTGTCAAAA+TGG | 0.150202 | 4_4:+69259928 | Msa0698840:CDS |
| CCCAACCACAATTTCTAAAA+AGG | 0.169213 | 4_4:-69259631 | None:intergenic |
| CCGAATATATAAACCATATT+TGG | 0.195568 | 4_4:-69261862 | None:intergenic |
| ATACTTTCTAATCTTATAAT+AGG | 0.217570 | 4_4:+69262029 | Msa0698840:three_prime_UTR |
| CTTAATTATTACTATCAAAA+AGG | 0.247468 | 4_4:-69258788 | None:intergenic |
| CCAAATATGGTTTATATATT+CGG | 0.263369 | 4_4:+69261862 | Msa0698840:CDS |
| GAACACTACTCAGGCACTTT+TGG | 0.269298 | 4_4:+69261063 | Msa0698840:intron |
| AGCAATTGCTGCAGCTCTTC+TGG | 0.272850 | 4_4:-69260437 | None:intergenic |
| TACTTTAGGCAAGCCAAATA+TGG | 0.291184 | 4_4:+69261849 | Msa0698840:CDS |
| TCATAGCAAAATCTCCTATA+TGG | 0.296582 | 4_4:+69259863 | Msa0698840:CDS |
| AGAAGAGCTGCAGCAATTGC+TGG | 0.326750 | 4_4:+69260439 | Msa0698840:CDS |
| AATGGATTCTATCTCTTTGC+CGG | 0.348065 | 4_4:-69259968 | None:intergenic |
| AGTAGAGGGCTCATAAAATA+AGG | 0.365049 | 4_4:-69260150 | None:intergenic |
| ATGCAAGGGCTGCTTACTTT+AGG | 0.367672 | 4_4:+69261835 | Msa0698840:CDS |
| TCAGGTTTGAACTGCAAAAC+TGG | 0.382327 | 4_4:-69258867 | None:intergenic |
| GGAAGAAAGTTCTGATTTAG+TGG | 0.385877 | 4_4:+69261516 | Msa0698840:CDS |
| AAGCTTGATGGTATTAAAGT+TGG | 0.388302 | 4_4:+69261115 | Msa0698840:CDS |
| AGGGTTGGTTTCTTCTTCAA+TGG | 0.398343 | 4_4:+69259752 | Msa0698840:intron |
| TATACAATTGAAAGAGAGAT+TGG | 0.400447 | 4_4:+69261091 | Msa0698840:CDS |
| GGTATTAAAGTTGGGCTTGT+TGG | 0.405372 | 4_4:+69261124 | Msa0698840:CDS |
| TGCAAGCAATTTGTCAAAAT+GGG | 0.420727 | 4_4:+69259929 | Msa0698840:CDS |
| TAAGATAACCCTCTAAAATC+TGG | 0.421989 | 4_4:-69260121 | None:intergenic |
| GACATCAGAAGGAGTGGATT+GGG | 0.425793 | 4_4:+69261495 | Msa0698840:CDS |
| AGCTTGATGGTATTAAAGTT+GGG | 0.431447 | 4_4:+69261116 | Msa0698840:CDS |
| ACCTGTGTCGGATGTTGTCC+AGG | 0.453491 | 4_4:-69260490 | None:intergenic |
| GTTTCAGTGGCAGTGCAGTC+AGG | 0.456748 | 4_4:-69258885 | None:intergenic |
| ATGCTTACTTCGTCAAGTCT+TGG | 0.461945 | 4_4:-69261697 | None:intergenic |
| CGGACGGACGGTTCGATCAC+TGG | 0.466089 | 4_4:+69261159 | Msa0698840:CDS |
| AGAGAGATTGGAAAGCTTGA+TGG | 0.470401 | 4_4:+69261103 | Msa0698840:CDS |
| ATAACACAACCCCACAAAAC+CGG | 0.476101 | 4_4:+69259655 | Msa0698840:five_prime_UTR |
| AAGTTCTGATTTAGTGGAAG+TGG | 0.483767 | 4_4:+69261522 | Msa0698840:CDS |
| CGAAAGTCTAGTTCTAGTAG+AGG | 0.483999 | 4_4:-69260165 | None:intergenic |
| CAACTCCATGTGCATTGAGC+AGG | 0.484567 | 4_4:-69259796 | None:intergenic |
| TGATTTAGTGGAAGTGGCCT+CGG | 0.485909 | 4_4:+69261528 | Msa0698840:CDS |
| TGACATCAGAAGGAGTGGAT+TGG | 0.493820 | 4_4:+69261494 | Msa0698840:CDS |
| GGCGTTCCAATAGTCAATGC+GGG | 0.494144 | 4_4:+69260460 | Msa0698840:CDS |
| TGAGTCTGCTATGAGAAGAC+TGG | 0.499266 | 4_4:+69260190 | Msa0698840:CDS |
| GAACCGTCCGTCCGTTGGCT+AGG | 0.499830 | 4_4:-69261150 | None:intergenic |
| CTTGTACTTTGCAAGCAAGT+AGG | 0.506586 | 4_4:-69261182 | None:intergenic |
| GCTAAAGGAGAGACGCTTGA+AGG | 0.514422 | 4_4:+69260260 | Msa0698840:CDS |
| CTGCACTGCCACTGAAACAC+AGG | 0.525690 | 4_4:+69258890 | Msa0698840:five_prime_UTR |
| ATGTGACAACCAAAAGCAAA+AGG | 0.527464 | 4_4:-69261975 | None:intergenic |
| AAAGACTATTTGACATCAGA+AGG | 0.528017 | 4_4:+69261484 | Msa0698840:CDS |
| CTTCTCCTGCTCAATGCACA+TGG | 0.528967 | 4_4:+69259791 | Msa0698840:CDS |
| CCCCACAAAACCGGCTTGTG+AGG | 0.530091 | 4_4:+69259664 | Msa0698840:five_prime_UTR |
| CTACTTGCTTGCAAAGTACA+AGG | 0.530311 | 4_4:+69261183 | Msa0698840:CDS |
| TGGATGTTGACGCTGATGCA+AGG | 0.535900 | 4_4:+69261820 | Msa0698840:CDS |
| ATCAAATTATAAGTATAAGA+AGG | 0.537090 | 4_4:-69258740 | None:intergenic |
| TGATCGAACCGTCCGTCCGT+TGG | 0.560820 | 4_4:-69261155 | None:intergenic |
| CTATTTGACATCAGAAGGAG+TGG | 0.562247 | 4_4:+69261489 | Msa0698840:CDS |
| ACTTCGTCAAGTCTTGGAAG+AGG | 0.562949 | 4_4:-69261691 | None:intergenic |
| GATACAATAAGAACAGTTGA+GGG | 0.568220 | 4_4:+69260370 | Msa0698840:intron |
| TCTGCCCCTCTGAAAAGCAA+TGG | 0.569434 | 4_4:-69259986 | None:intergenic |
| ATATGGTTTATATATTCGGA+TGG | 0.577869 | 4_4:+69261866 | Msa0698840:CDS |
| GCAATCCTCACCTCACAAGC+CGG | 0.578867 | 4_4:-69259674 | None:intergenic |
| CTTCGTCAAGTCTTGGAAGA+GGG | 0.584979 | 4_4:-69261690 | None:intergenic |
| AGATACAATAAGAACAGTTG+AGG | 0.586714 | 4_4:+69260369 | Msa0698840:intron |
| GTGCTTCGACACTTTGAAAG+CGG | 0.594961 | 4_4:+69260409 | Msa0698840:CDS |
| GGCGATGCAAAGACATGCCG+TGG | 0.595306 | 4_4:+69261660 | Msa0698840:CDS |
| GGATGTTGACGCTGATGCAA+GGG | 0.612635 | 4_4:+69261821 | Msa0698840:CDS |
| AAGCGTCTCTCCTTTAGCCG+CGG | 0.617353 | 4_4:-69260255 | None:intergenic |
| TGTGAATCAGAATATTCTCA+AGG | 0.617585 | 4_4:+69261639 | Msa0698840:CDS |
| TTGGTGTACCTGTGTTTCAG+TGG | 0.618005 | 4_4:-69258898 | None:intergenic |
| GAGTCTGCTATGAGAAGACT+GGG | 0.620320 | 4_4:+69260191 | Msa0698840:CDS |
| TGAAACTCTTGCTTGTTGGG+TGG | 0.621861 | 4_4:+69261895 | Msa0698840:CDS |
| GCGTTCCAATAGTCAATGCG+GGG | 0.634493 | 4_4:+69260461 | Msa0698840:CDS |
| GAATGCATGCCTACCTGTGT+CGG | 0.638231 | 4_4:-69260502 | None:intergenic |
| TATGAGAAGACTGGGTGGAG+AGG | 0.641183 | 4_4:+69260199 | Msa0698840:CDS |
| TGGCGTTCCAATAGTCAATG+CGG | 0.643059 | 4_4:+69260459 | Msa0698840:CDS |
| GAAAGTCTAGTTCTAGTAGA+GGG | 0.643557 | 4_4:-69260164 | None:intergenic |
| AGACCTAGCCAACGGACGGA+CGG | 0.644006 | 4_4:+69261147 | Msa0698840:CDS |
| TCCTGGACAACATCCGACAC+AGG | 0.657570 | 4_4:+69260489 | Msa0698840:CDS |
| TGGAAGAGGGTGCATAACCA+CGG | 0.659443 | 4_4:-69261677 | None:intergenic |
| TTGGAGACCTAGCCAACGGA+CGG | 0.663036 | 4_4:+69261143 | Msa0698840:CDS |
| CTTGTTGGAGACCTAGCCAA+CGG | 0.678794 | 4_4:+69261139 | Msa0698840:CDS |
| CGTTCCAATAGTCAATGCGG+GGG | 0.688550 | 4_4:+69260462 | Msa0698840:CDS |
| ATAAACCACGTCACACTCCG+AGG | 0.690679 | 4_4:-69261545 | None:intergenic |
| AGTGGCCTCGGAGTGTGACG+TGG | 0.692222 | 4_4:+69261540 | Msa0698840:CDS |
| TGACAACCAAAAGCAAAAGG+AGG | 0.701165 | 4_4:-69261972 | None:intergenic |
| TCTGCTATGAGAAGACTGGG+TGG | 0.712126 | 4_4:+69260194 | Msa0698840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTATAAGTATAAGA+AGG | - | chr4_4:69258743-69258762 | None:intergenic | 15.0% |
| !! | CTTAATTATTACTATCAAAA+AGG | - | chr4_4:69258791-69258810 | None:intergenic | 15.0% |
| !!! | TGAAATTTTCATCAAATTTT+GGG | - | chr4_4:69260769-69260788 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTCATCAAATTT+TGG | - | chr4_4:69260770-69260789 | None:intergenic | 15.0% |
| !! | TTATTAATAGCTTATTAAAG+TGG | - | chr4_4:69260902-69260921 | None:intergenic | 15.0% |
| !!! | AAAATTAATTTGAGATTAAG+TGG | + | chr4_4:69261337-69261356 | Msa0698840:intron | 15.0% |
| !! | CTAATGATATTTACATTTAT+AGG | + | chr4_4:69261453-69261472 | Msa0698840:intron | 15.0% |
| !! | ATACTTTCTAATCTTATAAT+AGG | + | chr4_4:69262029-69262048 | Msa0698840:three_prime_UTR | 15.0% |
| !! | TATTACTATCAAAAAGGAAA+GGG | - | chr4_4:69258785-69258804 | None:intergenic | 20.0% |
| !! | TTATTACTATCAAAAAGGAA+AGG | - | chr4_4:69258786-69258805 | None:intergenic | 20.0% |
| !!! | TTACTAATACTATTTTGTCA+TGG | + | chr4_4:69258945-69258964 | Msa0698840:intron | 20.0% |
| !!! | TACTAATACTATTTTGTCAT+GGG | + | chr4_4:69258946-69258965 | Msa0698840:intron | 20.0% |
| !!! | CCAAATATTTATTTCTATTG+TGG | - | chr4_4:69258975-69258994 | None:intergenic | 20.0% |
| !! | CCACAATAGAAATAAATATT+TGG | + | chr4_4:69258972-69258991 | Msa0698840:intron | 20.0% |
| !! | TCATGACAAAAATACTTATA+TGG | - | chr4_4:69259118-69259137 | None:intergenic | 20.0% |
| !! | AACATCAAACTTGAAATTAA+GGG | - | chr4_4:69260310-69260329 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAGAATTTCATTG+TGG | + | chr4_4:69260337-69260356 | Msa0698840:intron | 20.0% |
| !! | AGATATTATAATCCAAAACA+CGG | - | chr4_4:69260557-69260576 | None:intergenic | 20.0% |
| !!! | TGTTTTGGATTATAATATCT+TGG | + | chr4_4:69260557-69260576 | Msa0698840:intron | 20.0% |
| !! | CTATATTATGTCAAATAGAT+TGG | + | chr4_4:69260591-69260610 | Msa0698840:intron | 20.0% |
| !! | AAATAGATTGGATAAAATGT+AGG | + | chr4_4:69260603-69260622 | Msa0698840:intron | 20.0% |
| !!! | CTTTTAATATTTGCATTTCA+TGG | - | chr4_4:69260827-69260846 | None:intergenic | 20.0% |
| !! | ATGTTAGTCGTAAATAATTA+TGG | + | chr4_4:69260964-69260983 | Msa0698840:intron | 20.0% |
| !! | TGTTAGTCGTAAATAATTAT+GGG | + | chr4_4:69260965-69260984 | Msa0698840:intron | 20.0% |
| !! | GTAAATAATTATGGGATAAA+GGG | + | chr4_4:69260973-69260992 | Msa0698840:intron | 20.0% |
| !! | CCAAATATGGTTTATATATT+CGG | + | chr4_4:69261862-69261881 | Msa0698840:CDS | 20.0% |
| !! | ACAAAAAAGACAAGTATTAA+AGG | - | chr4_4:69262001-69262020 | None:intergenic | 20.0% |
| ! | ATTACTATCAAAAAGGAAAG+GGG | - | chr4_4:69258784-69258803 | None:intergenic | 25.0% |
| ! | TTGCATTGAAAAGATAGATT+TGG | - | chr4_4:69258920-69258939 | None:intergenic | 25.0% |
| ! | CTTATATGGTCAAAATCATT+TGG | - | chr4_4:69259104-69259123 | None:intergenic | 25.0% |
| !!! | AAATGGTAATGTGTGTTTTT+TGG | + | chr4_4:69259280-69259299 | Msa0698840:intron | 25.0% |
| !!! | ATAGAGCATTTTGATATCTT+CGG | - | chr4_4:69259828-69259847 | None:intergenic | 25.0% |
| !! | TGATTTTATAGGTTCCATAT+AGG | - | chr4_4:69259880-69259899 | None:intergenic | 25.0% |
| ! | GCACATAAAAATCTAGAAAT+AGG | - | chr4_4:69259912-69259931 | None:intergenic | 25.0% |
| ! | CAACATCAAACTTGAAATTA+AGG | - | chr4_4:69260311-69260330 | None:intergenic | 25.0% |
| ! | GATATTATAATCCAAAACAC+GGG | - | chr4_4:69260556-69260575 | None:intergenic | 25.0% |
| !!! | CAACTAGAAGTTTTGAAAAA+TGG | - | chr4_4:69260677-69260696 | None:intergenic | 25.0% |
| ! | TAACACAAGTATATACATTC+TGG | + | chr4_4:69260721-69260740 | Msa0698840:intron | 25.0% |
| !! | AATTTTCATCAAATTTTGGG+TGG | - | chr4_4:69260766-69260785 | None:intergenic | 25.0% |
| ! | TTCAAAAACATCAAACATGA+TGG | + | chr4_4:69260785-69260804 | Msa0698840:intron | 25.0% |
| ! | TAATAGCTTATTAAAGTGGA+TGG | - | chr4_4:69260898-69260917 | None:intergenic | 25.0% |
| ! | CGTAAATAATTATGGGATAA+AGG | + | chr4_4:69260972-69260991 | Msa0698840:intron | 25.0% |
| ! | TATACAATTGAAAGAGAGAT+TGG | + | chr4_4:69261091-69261110 | Msa0698840:CDS | 25.0% |
| !! | TATGTTTGAGATTTATGAGT+AGG | + | chr4_4:69261285-69261304 | Msa0698840:intron | 25.0% |
| ! | CCGAATATATAAACCATATT+TGG | - | chr4_4:69261865-69261884 | None:intergenic | 25.0% |
| ! | ATATGGTTTATATATTCGGA+TGG | + | chr4_4:69261866-69261885 | Msa0698840:CDS | 25.0% |
| !! | TAAATCTTTTTACAAACTGC+AGG | - | chr4_4:69262078-69262097 | None:intergenic | 25.0% |
| ! | TAATACTATTTTGTCATGGG+TGG | + | chr4_4:69258949-69258968 | Msa0698840:intron | 30.0% |
| GTTTATGTATAGTTCGTATC+AGG | + | chr4_4:69259181-69259200 | Msa0698840:intron | 30.0% | |
| GCATGAAAAATCTTGAATCA+TGG | + | chr4_4:69259227-69259246 | Msa0698840:intron | 30.0% | |
| !!! | GTATTGTTGTGGTTTTAGAA+TGG | + | chr4_4:69259255-69259274 | Msa0698840:intron | 30.0% |
| AATTCTATCCTTGAAACTTC+TGG | - | chr4_4:69259309-69259328 | None:intergenic | 30.0% | |
| ! | TTCTTGCTTTATTGATGTCT+AGG | + | chr4_4:69259363-69259382 | Msa0698840:intron | 30.0% |
| TGTCTAGGTCATAAATTGTT+TGG | + | chr4_4:69259378-69259397 | Msa0698840:intron | 30.0% | |
| TAGGTCATAAATTGTTTGGA+GGG | + | chr4_4:69259382-69259401 | Msa0698840:intron | 30.0% | |
| ! | AAATGGTGTCAAAGTAAAAC+TGG | - | chr4_4:69259596-69259615 | None:intergenic | 30.0% |
| ! | CACAATTTCTAAAAAGGGAA+AGG | - | chr4_4:69259628-69259647 | None:intergenic | 30.0% |
| !! | CTTTCCCTTTTTAGAAATTG+TGG | + | chr4_4:69259626-69259645 | Msa0698840:intron | 30.0% |
| ! | CCAACCACAATTTCTAAAAA+GGG | - | chr4_4:69259633-69259652 | None:intergenic | 30.0% |
| !! | CCTTTTTAGAAATTGTGGTT+GGG | + | chr4_4:69259631-69259650 | Msa0698840:intron | 30.0% |
| GACAATGTGTTTAAAAGTGA+GGG | - | chr4_4:69259699-69259718 | None:intergenic | 30.0% | |
| TGACAATGTGTTTAAAAGTG+AGG | - | chr4_4:69259700-69259719 | None:intergenic | 30.0% | |
| !! | TCACTTTTAAACACATTGTC+AGG | + | chr4_4:69259699-69259718 | Msa0698840:intron | 30.0% |
| TCATAGCAAAATCTCCTATA+TGG | + | chr4_4:69259863-69259882 | Msa0698840:CDS | 30.0% | |
| !!! | GGATAGCATGTTGATTTTAT+AGG | - | chr4_4:69259891-69259910 | None:intergenic | 30.0% |
| TGCAAGCAATTTGTCAAAAT+GGG | + | chr4_4:69259929-69259948 | Msa0698840:CDS | 30.0% | |
| !! | TAAGATAACCCTCTAAAATC+TGG | - | chr4_4:69260124-69260143 | None:intergenic | 30.0% |
| AGATACAATAAGAACAGTTG+AGG | + | chr4_4:69260369-69260388 | Msa0698840:intron | 30.0% | |
| GATACAATAAGAACAGTTGA+GGG | + | chr4_4:69260370-69260389 | Msa0698840:intron | 30.0% | |
| ! | CAAAACTTCTAGTTGTATCA+CGG | + | chr4_4:69260682-69260701 | Msa0698840:intron | 30.0% |
| ! | ACAAGTTCAAGCTAACATTT+TGG | - | chr4_4:69261037-69261056 | None:intergenic | 30.0% |
| !! | TGTATTTTTGAACACTACTC+AGG | + | chr4_4:69261054-69261073 | Msa0698840:intron | 30.0% |
| ! | AAGCTTGATGGTATTAAAGT+TGG | + | chr4_4:69261115-69261134 | Msa0698840:CDS | 30.0% |
| ! | AGCTTGATGGTATTAAAGTT+GGG | + | chr4_4:69261116-69261135 | Msa0698840:CDS | 30.0% |
| TGTGGTAAAAATGAAGGTAA+TGG | + | chr4_4:69261234-69261253 | Msa0698840:intron | 30.0% | |
| AAAGACTATTTGACATCAGA+AGG | + | chr4_4:69261484-69261503 | Msa0698840:CDS | 30.0% | |
| CGTATTCAAAAAGAACGATT+TGG | + | chr4_4:69261574-69261593 | Msa0698840:CDS | 30.0% | |
| TGTGAATCAGAATATTCTCA+AGG | + | chr4_4:69261639-69261658 | Msa0698840:CDS | 30.0% | |
| AGTTGTAAATCACGTAAACT+CGG | - | chr4_4:69261773-69261792 | None:intergenic | 30.0% | |
| GTTTACGTGATTTACAACTT+TGG | + | chr4_4:69261774-69261793 | Msa0698840:intron | 30.0% | |
| !!! | ATTTTGAAACTCTTGCTTGT+TGG | + | chr4_4:69261891-69261910 | Msa0698840:CDS | 30.0% |
| !!! | TTTTGAAACTCTTGCTTGTT+GGG | + | chr4_4:69261892-69261911 | Msa0698840:CDS | 30.0% |
| ! | TAGGTTTTACAATGAGAAAG+AGG | + | chr4_4:69262048-69262067 | Msa0698840:three_prime_UTR | 30.0% |
| GTCATGATTGTGACCAAATA+TGG | + | chr4_4:69259131-69259150 | Msa0698840:intron | 35.0% | |
| TGTATAGTTCGTATCAGGAT+CGG | + | chr4_4:69259186-69259205 | Msa0698840:intron | 35.0% | |
| ! | TCATGGTTTGAGTATTGTTG+TGG | + | chr4_4:69259244-69259263 | Msa0698840:intron | 35.0% |
| CTAGGTCATAAATTGTTTGG+AGG | + | chr4_4:69259381-69259400 | Msa0698840:intron | 35.0% | |
| ! | GCATTAGAGCATTCAAGTAA+AGG | - | chr4_4:69259531-69259550 | None:intergenic | 35.0% |
| !! | ACTGGAAAGCATTCAAGTAA+AGG | - | chr4_4:69259578-69259597 | None:intergenic | 35.0% |
| GGGAAAGGAAAGTTTCAAAA+TGG | - | chr4_4:69259613-69259632 | None:intergenic | 35.0% | |
| !! | CCCTTTTTAGAAATTGTGGT+TGG | + | chr4_4:69259630-69259649 | Msa0698840:intron | 35.0% |
| ! | CCCAACCACAATTTCTAAAA+AGG | - | chr4_4:69259634-69259653 | None:intergenic | 35.0% |
| GTGCAAGCAATTTGTCAAAA+TGG | + | chr4_4:69259928-69259947 | Msa0698840:CDS | 35.0% | |
| GGGACAAAGTGAAAAAATTC+CGG | + | chr4_4:69259949-69259968 | Msa0698840:CDS | 35.0% | |
| ! | AATGGATTCTATCTCTTTGC+CGG | - | chr4_4:69259971-69259990 | None:intergenic | 35.0% |
| !! | TAGAATCCATTGCTTTTCAG+AGG | + | chr4_4:69259980-69259999 | Msa0698840:CDS | 35.0% |
| !! | AGAATCCATTGCTTTTCAGA+GGG | + | chr4_4:69259981-69260000 | Msa0698840:CDS | 35.0% |
| ! | ATCTCGCGCAACTTTAAAAA+TGG | - | chr4_4:69260069-69260088 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTTGCGCGAGATA+TGG | + | chr4_4:69260070-69260089 | Msa0698840:CDS | 35.0% |
| AGTAGAGGGCTCATAAAATA+AGG | - | chr4_4:69260153-69260172 | None:intergenic | 35.0% | |
| !! | GAAAGTCTAGTTCTAGTAGA+GGG | - | chr4_4:69260167-69260186 | None:intergenic | 35.0% |
| ! | CTGCAAGATGAAACTGATTT+AGG | + | chr4_4:69260631-69260650 | Msa0698840:intron | 35.0% |
| ! | CATGATGGAGATCAAAATAG+AGG | + | chr4_4:69260800-69260819 | Msa0698840:intron | 35.0% |
| !! | TTATTTTGTCTCTCCAGATG+TGG | + | chr4_4:69261216-69261235 | Msa0698840:CDS | 35.0% |
| TCCAGATGTGGTAAAAATGA+AGG | + | chr4_4:69261228-69261247 | Msa0698840:CDS | 35.0% | |
| !! | ACCTTCATTTTTACCACATC+TGG | - | chr4_4:69261232-69261251 | None:intergenic | 35.0% |
| TTGAGATTTATGAGTAGGCT+TGG | + | chr4_4:69261290-69261309 | Msa0698840:intron | 35.0% | |
| ! | GGAAGAAAGTTCTGATTTAG+TGG | + | chr4_4:69261516-69261535 | Msa0698840:CDS | 35.0% |
| ! | AAGTTCTGATTTAGTGGAAG+TGG | + | chr4_4:69261522-69261541 | Msa0698840:CDS | 35.0% |
| GACCTTTATGAAAAAGCTAG+AGG | + | chr4_4:69261607-69261626 | Msa0698840:CDS | 35.0% | |
| !!! | TGCCTCTAGCTTTTTCATAA+AGG | - | chr4_4:69261612-69261631 | None:intergenic | 35.0% |
| !!! | TATTTTGATGCAGATCACTG+TGG | + | chr4_4:69261800-69261819 | Msa0698840:intron | 35.0% |
| TACTTTAGGCAAGCCAAATA+TGG | + | chr4_4:69261849-69261868 | Msa0698840:CDS | 35.0% | |
| !! | GCATTTTGAAGATGAATTGC+AGG | - | chr4_4:69261925-69261944 | None:intergenic | 35.0% |
| ! | ATTGTACCTCCTTTTGCTTT+TGG | + | chr4_4:69261966-69261985 | Msa0698840:three_prime_UTR | 35.0% |
| ATGTGACAACCAAAAGCAAA+AGG | - | chr4_4:69261978-69261997 | None:intergenic | 35.0% | |
| TCAGGTTTGAACTGCAAAAC+TGG | - | chr4_4:69258870-69258889 | None:intergenic | 40.0% | |
| TCACGCAGTTACTCCATATT+TGG | - | chr4_4:69259147-69259166 | None:intergenic | 40.0% | |
| GTATCAGGATCGGACAAAAT+TGG | + | chr4_4:69259196-69259215 | Msa0698840:intron | 40.0% | |
| !!! | GTGGTTTTAGAATGGCGAAA+TGG | + | chr4_4:69259263-69259282 | Msa0698840:intron | 40.0% |
| TTTGGTTGCCAGAAGTTTCA+AGG | + | chr4_4:69259298-69259317 | Msa0698840:intron | 40.0% | |
| TCTGATGCAGAGACAATTTG+TGG | + | chr4_4:69259330-69259349 | Msa0698840:intron | 40.0% | |
| CTGATGCAGAGACAATTTGT+GGG | + | chr4_4:69259331-69259350 | Msa0698840:intron | 40.0% | |
| GGCTTTCTCAAACTCATTTG+TGG | + | chr4_4:69259403-69259422 | Msa0698840:intron | 40.0% | |
| ATAACACAACCCCACAAAAC+CGG | + | chr4_4:69259655-69259674 | Msa0698840:five_prime_UTR | 40.0% | |
| !! | AGGGTTGGTTTCTTCTTCAA+TGG | + | chr4_4:69259752-69259771 | Msa0698840:intron | 40.0% |
| !! | GAATCCATTGCTTTTCAGAG+GGG | + | chr4_4:69259982-69260001 | Msa0698840:CDS | 40.0% |
| ! | TCCTGAAAGCCAGATTTTAG+AGG | + | chr4_4:69260112-69260131 | Msa0698840:CDS | 40.0% |
| ! | CCTGAAAGCCAGATTTTAGA+GGG | + | chr4_4:69260113-69260132 | Msa0698840:CDS | 40.0% |
| !! | CGAAAGTCTAGTTCTAGTAG+AGG | - | chr4_4:69260168-69260187 | None:intergenic | 40.0% |
| AATCCAAAACACGGGAACTT+TGG | - | chr4_4:69260548-69260567 | None:intergenic | 40.0% | |
| !! | TTGTTTCTGCTATGCTTGCT+TGG | + | chr4_4:69260862-69260881 | Msa0698840:intron | 40.0% |
| ! | CAAAGGATGAATGAGGGTAT+TGG | - | chr4_4:69260927-69260946 | None:intergenic | 40.0% |
| AAACATTTGACCAAGCGCAA+AGG | - | chr4_4:69260944-69260963 | None:intergenic | 40.0% | |
| AGAGAGATTGGAAAGCTTGA+TGG | + | chr4_4:69261103-69261122 | Msa0698840:CDS | 40.0% | |
| GGTATTAAAGTTGGGCTTGT+TGG | + | chr4_4:69261124-69261143 | Msa0698840:CDS | 40.0% | |
| CTTGTACTTTGCAAGCAAGT+AGG | - | chr4_4:69261185-69261204 | None:intergenic | 40.0% | |
| CTACTTGCTTGCAAAGTACA+AGG | + | chr4_4:69261183-69261202 | Msa0698840:CDS | 40.0% | |
| !! | GCTTGGTGTGAGAAAAGAAT+TGG | + | chr4_4:69261307-69261326 | Msa0698840:intron | 40.0% |
| TGTGCGTTAGCGATACAAAT+GGG | - | chr4_4:69261419-69261438 | None:intergenic | 40.0% | |
| TTGTGCGTTAGCGATACAAA+TGG | - | chr4_4:69261420-69261439 | None:intergenic | 40.0% | |
| CTATTTGACATCAGAAGGAG+TGG | + | chr4_4:69261489-69261508 | Msa0698840:CDS | 40.0% | |
| ATGCTTACTTCGTCAAGTCT+TGG | - | chr4_4:69261700-69261719 | None:intergenic | 40.0% | |
| ! | TCAAATGTTGTGACTTGTGC+AGG | + | chr4_4:69261726-69261745 | Msa0698840:intron | 40.0% |
| TGACAACCAAAAGCAAAAGG+AGG | - | chr4_4:69261975-69261994 | None:intergenic | 40.0% | |
| TTGGTGTACCTGTGTTTCAG+TGG | - | chr4_4:69258901-69258920 | None:intergenic | 45.0% | |
| ! | TTAAGAGTCCCACATCGGTT+AGG | - | chr4_4:69259731-69259750 | None:intergenic | 45.0% |
| !! | CCCTCTAAAATCTGGCTTTC+AGG | - | chr4_4:69260116-69260135 | None:intergenic | 45.0% |
| TGAGTCTGCTATGAGAAGAC+TGG | + | chr4_4:69260190-69260209 | Msa0698840:CDS | 45.0% | |
| GAGTCTGCTATGAGAAGACT+GGG | + | chr4_4:69260191-69260210 | Msa0698840:CDS | 45.0% | |
| !! | GGGTGGAGAGGTTTTAACAA+CGG | + | chr4_4:69260211-69260230 | Msa0698840:CDS | 45.0% |
| ! | TGCTAGAGAATTTTCGTCCG+CGG | + | chr4_4:69260238-69260257 | Msa0698840:CDS | 45.0% |
| ! | GTGCTTCGACACTTTGAAAG+CGG | + | chr4_4:69260409-69260428 | Msa0698840:CDS | 45.0% |
| TGGCGTTCCAATAGTCAATG+CGG | + | chr4_4:69260459-69260478 | Msa0698840:CDS | 45.0% | |
| GGTTGCAGTAGAATCCAACA+TGG | - | chr4_4:69260527-69260546 | None:intergenic | 45.0% | |
| ! | CAACCAAAGTTCCCGTGTTT+TGG | + | chr4_4:69260542-69260561 | Msa0698840:intron | 45.0% |
| CAAGCGCAAAGGATGAATGA+GGG | - | chr4_4:69260933-69260952 | None:intergenic | 45.0% | |
| ! | GAACACTACTCAGGCACTTT+TGG | + | chr4_4:69261063-69261082 | Msa0698840:intron | 45.0% |
| CGTTAGCGATACAAATGGGA+AGG | - | chr4_4:69261415-69261434 | None:intergenic | 45.0% | |
| GTATCGCTAACGCACAACAT+TGG | + | chr4_4:69261423-69261442 | Msa0698840:intron | 45.0% | |
| TGACATCAGAAGGAGTGGAT+TGG | + | chr4_4:69261494-69261513 | Msa0698840:CDS | 45.0% | |
| ! | GACATCAGAAGGAGTGGATT+GGG | + | chr4_4:69261495-69261514 | Msa0698840:CDS | 45.0% |
| TGATTTAGTGGAAGTGGCCT+CGG | + | chr4_4:69261528-69261547 | Msa0698840:CDS | 45.0% | |
| CTTCGTCAAGTCTTGGAAGA+GGG | - | chr4_4:69261693-69261712 | None:intergenic | 45.0% | |
| ACTTCGTCAAGTCTTGGAAG+AGG | - | chr4_4:69261694-69261713 | None:intergenic | 45.0% | |
| ATGCAAGGGCTGCTTACTTT+AGG | + | chr4_4:69261835-69261854 | Msa0698840:CDS | 45.0% | |
| ! | TGAAACTCTTGCTTGTTGGG+TGG | + | chr4_4:69261895-69261914 | Msa0698840:CDS | 45.0% |
| !!! | TAAAATAATTAAATGTATTT+TGG | + | chr4_4:69259054-69259073 | Msa0698840:intron | 5.0% |
| GGATCGGACAAAATTGGCGA+CGG | + | chr4_4:69259202-69259221 | Msa0698840:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_4:69259668-69259687 | None:intergenic | 50.0% |
| ACCGATGTGGGACTCTTAAC+AGG | + | chr4_4:69259732-69259751 | Msa0698840:intron | 50.0% | |
| CCCTGTTAAGAGTCCCACAT+CGG | - | chr4_4:69259736-69259755 | None:intergenic | 50.0% | |
| CCGATGTGGGACTCTTAACA+GGG | + | chr4_4:69259733-69259752 | Msa0698840:intron | 50.0% | |
| TGTGGGACTCTTAACAGGGT+TGG | + | chr4_4:69259737-69259756 | Msa0698840:intron | 50.0% | |
| CTTCTCCTGCTCAATGCACA+TGG | + | chr4_4:69259791-69259810 | Msa0698840:CDS | 50.0% | |
| CAACTCCATGTGCATTGAGC+AGG | - | chr4_4:69259799-69259818 | None:intergenic | 50.0% | |
| ! | TCTGCCCCTCTGAAAAGCAA+TGG | - | chr4_4:69259989-69260008 | None:intergenic | 50.0% |
| TCTGCTATGAGAAGACTGGG+TGG | + | chr4_4:69260194-69260213 | Msa0698840:CDS | 50.0% | |
| TATGAGAAGACTGGGTGGAG+AGG | + | chr4_4:69260199-69260218 | Msa0698840:CDS | 50.0% | |
| ! | GAATTTTCGTCCGCGGCTAA+AGG | + | chr4_4:69260245-69260264 | Msa0698840:CDS | 50.0% |
| GCTAAAGGAGAGACGCTTGA+AGG | + | chr4_4:69260260-69260279 | Msa0698840:CDS | 50.0% | |
| AGCAATTGCTGCAGCTCTTC+TGG | - | chr4_4:69260440-69260459 | None:intergenic | 50.0% | |
| AGAAGAGCTGCAGCAATTGC+TGG | + | chr4_4:69260439-69260458 | Msa0698840:CDS | 50.0% | |
| GGCGTTCCAATAGTCAATGC+GGG | + | chr4_4:69260460-69260479 | Msa0698840:CDS | 50.0% | |
| GCGTTCCAATAGTCAATGCG+GGG | + | chr4_4:69260461-69260480 | Msa0698840:CDS | 50.0% | |
| CGTTCCAATAGTCAATGCGG+GGG | + | chr4_4:69260462-69260481 | Msa0698840:CDS | 50.0% | |
| GAATGCATGCCTACCTGTGT+CGG | - | chr4_4:69260505-69260524 | None:intergenic | 50.0% | |
| GGTAGGCATGCATTCCATGT+TGG | + | chr4_4:69260510-69260529 | Msa0698840:intron | 50.0% | |
| CCAAGCGCAAAGGATGAATG+AGG | - | chr4_4:69260934-69260953 | None:intergenic | 50.0% | |
| CCTCATTCATCCTTTGCGCT+TGG | + | chr4_4:69260931-69260950 | Msa0698840:intron | 50.0% | |
| CTTGTTGGAGACCTAGCCAA+CGG | + | chr4_4:69261139-69261158 | Msa0698840:CDS | 50.0% | |
| ATAAACCACGTCACACTCCG+AGG | - | chr4_4:69261548-69261567 | None:intergenic | 50.0% | |
| ! | TGGAAGAGGGTGCATAACCA+CGG | - | chr4_4:69261680-69261699 | None:intergenic | 50.0% |
| TGGATGTTGACGCTGATGCA+AGG | + | chr4_4:69261820-69261839 | Msa0698840:CDS | 50.0% | |
| GGATGTTGACGCTGATGCAA+GGG | + | chr4_4:69261821-69261840 | Msa0698840:CDS | 50.0% | |
| GTTTCAGTGGCAGTGCAGTC+AGG | - | chr4_4:69258888-69258907 | None:intergenic | 55.0% | |
| CTGCACTGCCACTGAAACAC+AGG | + | chr4_4:69258890-69258909 | Msa0698840:five_prime_UTR | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_4:69259667-69259686 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_4:69259669-69259688 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_4:69259669-69259688 | Msa0698840:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr4_4:69259677-69259696 | None:intergenic | 55.0% | |
| AGGCCATCTCCTAACCGATG+TGG | + | chr4_4:69259719-69259738 | Msa0698840:intron | 55.0% | |
| GGCCATCTCCTAACCGATGT+GGG | + | chr4_4:69259720-69259739 | Msa0698840:intron | 55.0% | |
| ! | GTCCCACATCGGTTAGGAGA+TGG | - | chr4_4:69259725-69259744 | None:intergenic | 55.0% |
| AAGCGTCTCTCCTTTAGCCG+CGG | - | chr4_4:69260258-69260277 | None:intergenic | 55.0% | |
| !! | CCATCCCCCGCATTGACTAT+TGG | - | chr4_4:69260469-69260488 | None:intergenic | 55.0% |
| CCAATAGTCAATGCGGGGGA+TGG | + | chr4_4:69260466-69260485 | Msa0698840:CDS | 55.0% | |
| TCCTGGACAACATCCGACAC+AGG | + | chr4_4:69260489-69260508 | Msa0698840:CDS | 55.0% | |
| ACCTGTGTCGGATGTTGTCC+AGG | - | chr4_4:69260493-69260512 | None:intergenic | 55.0% | |
| GGACAACATCCGACACAGGT+AGG | + | chr4_4:69260493-69260512 | Msa0698840:intron | 55.0% | |
| TTGGAGACCTAGCCAACGGA+CGG | + | chr4_4:69261143-69261162 | Msa0698840:CDS | 55.0% | |
| ! | TGACTTGTGCAGGTCTCGCT+AGG | + | chr4_4:69261736-69261755 | Msa0698840:intron | 55.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_4:69259664-69259683 | Msa0698840:five_prime_UTR | 60.0% |
| AGACCTAGCCAACGGACGGA+CGG | + | chr4_4:69261147-69261166 | Msa0698840:CDS | 60.0% | |
| TGATCGAACCGTCCGTCCGT+TGG | - | chr4_4:69261158-69261177 | None:intergenic | 60.0% | |
| GGCGATGCAAAGACATGCCG+TGG | + | chr4_4:69261660-69261679 | Msa0698840:CDS | 60.0% | |
| GTCAATGCGGGGGATGGTCC+TGG | + | chr4_4:69260472-69260491 | Msa0698840:CDS | 65.0% | |
| ! | GAACCGTCCGTCCGTTGGCT+AGG | - | chr4_4:69261153-69261172 | None:intergenic | 65.0% |
| CGGACGGACGGTTCGATCAC+TGG | + | chr4_4:69261159-69261178 | Msa0698840:CDS | 65.0% | |
| AGTGGCCTCGGAGTGTGACG+TGG | + | chr4_4:69261540-69261559 | Msa0698840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69258733 | 69262113 | 69258733 | ID=Msa0698840;Name=Msa0698840 |
| chr4_4 | mRNA | 69258733 | 69262113 | 69258733 | ID=Msa0698840-mRNA-1;Parent=Msa0698840;Name=Msa0698840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=249|1|1|1|0.66|0.57|7|193|389 |
| chr4_4 | exon | 69258733 | 69258911 | 69258733 | ID=Msa0698840-mRNA-1:exon:20731;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69259633 | 69259685 | 69259633 | ID=Msa0698840-mRNA-1:exon:20732;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69259754 | 69260281 | 69259754 | ID=Msa0698840-mRNA-1:exon:20733;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69260371 | 69260510 | 69260371 | ID=Msa0698840-mRNA-1:exon:20734;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69261076 | 69261249 | 69261076 | ID=Msa0698840-mRNA-1:exon:20735;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69261475 | 69261711 | 69261475 | ID=Msa0698840-mRNA-1:exon:20736;Parent=Msa0698840-mRNA-1 |
| chr4_4 | exon | 69261813 | 69262113 | 69261813 | ID=Msa0698840-mRNA-1:exon:20737;Parent=Msa0698840-mRNA-1 |
| chr4_4 | five_prime_UTR | 69258733 | 69258911 | 69258733 | ID=Msa0698840-mRNA-1:five_prime_utr;Parent=Msa0698840-mRNA-1 |
| chr4_4 | five_prime_UTR | 69259633 | 69259685 | 69259633 | ID=Msa0698840-mRNA-1:five_prime_utr;Parent=Msa0698840-mRNA-1 |
| chr4_4 | five_prime_UTR | 69259754 | 69259770 | 69259754 | ID=Msa0698840-mRNA-1:five_prime_utr;Parent=Msa0698840-mRNA-1 |
| chr4_4 | CDS | 69259771 | 69260281 | 69259771 | ID=Msa0698840-mRNA-1:cds;Parent=Msa0698840-mRNA-1 |
| chr4_4 | CDS | 69260371 | 69260510 | 69260371 | ID=Msa0698840-mRNA-1:cds;Parent=Msa0698840-mRNA-1 |
| chr4_4 | CDS | 69261076 | 69261249 | 69261076 | ID=Msa0698840-mRNA-1:cds;Parent=Msa0698840-mRNA-1 |
| chr4_4 | CDS | 69261475 | 69261711 | 69261475 | ID=Msa0698840-mRNA-1:cds;Parent=Msa0698840-mRNA-1 |
| chr4_4 | CDS | 69261813 | 69261920 | 69261813 | ID=Msa0698840-mRNA-1:cds;Parent=Msa0698840-mRNA-1 |
| chr4_4 | three_prime_UTR | 69261921 | 69262113 | 69261921 | ID=Msa0698840-mRNA-1:three_prime_utr;Parent=Msa0698840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
