Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655350 | XP_013457403.1 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 7.11e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562030 | Msa0655350 | 0.856861 | 2.416680e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655350 | MtrunA17_Chr4g0052901 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 6.54e-57 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATCTTCATTATGTATT+TGG | 0.145566 | 4_3:-63922893 | Msa0655350:three_prime_UTR |
| TAGAAAATCAAAACTAATTC+AGG | 0.230332 | 4_3:+63922732 | None:intergenic |
| ACTTATCCGTGCTAACATTA+TGG | 0.295384 | 4_3:+63922831 | None:intergenic |
| TCTTGCTGCTCCTAAGCTTC+AGG | 0.303181 | 4_3:-63925263 | Msa0655350:CDS |
| GTGCTATCTTCATTGTGTAC+TGG | 0.320113 | 4_3:-63922972 | Msa0655350:three_prime_UTR |
| TTGAAGCCTGTTGGTAGAAT+AGG | 0.330969 | 4_3:-63924200 | Msa0655350:CDS |
| GGTTGTTAGATTACCTGGTT+AGG | 0.333605 | 4_3:+63925508 | None:intergenic |
| TTCTTCCCTATTCTACCAAC+AGG | 0.374239 | 4_3:+63924194 | None:intergenic |
| CATATGTGACGCTTTCTACT+TGG | 0.404049 | 4_3:+63924116 | None:intergenic |
| ATACCATTAGCACTCACTAT+TGG | 0.405698 | 4_3:+63924090 | None:intergenic |
| TGAAGCCTGTTGGTAGAATA+GGG | 0.429770 | 4_3:-63924199 | Msa0655350:CDS |
| TGCTATCTTCATTGTGTACT+GGG | 0.430891 | 4_3:-63922971 | Msa0655350:three_prime_UTR |
| TATTCTACCAACAGGCTTCA+AGG | 0.434559 | 4_3:+63924202 | None:intergenic |
| ATTCCAATAGTGAGTGCTAA+TGG | 0.435680 | 4_3:-63924093 | Msa0655350:intron |
| TTTCTATTGTAGGTGGGTCT+CGG | 0.435994 | 4_3:-63923011 | Msa0655350:intron |
| CATGGCGTTGTTGTTGATAG+TGG | 0.439825 | 4_3:+63925201 | None:intergenic |
| GCTTCTTTCTTGTCATAGAA+AGG | 0.440776 | 4_3:+63925313 | None:intergenic |
| ACTTGCATAATTTGTTACCT+TGG | 0.452215 | 4_3:-63922709 | Msa0655350:three_prime_UTR |
| ACTTCCATGGAAGTGGTTGA+TGG | 0.472045 | 4_3:+63925232 | None:intergenic |
| GTTGTTAGATTACCTGGTTA+GGG | 0.476702 | 4_3:+63925509 | None:intergenic |
| CGTCCCATCAACCACTTCCA+TGG | 0.478820 | 4_3:-63925236 | Msa0655350:CDS |
| GGGACGGAAACCTGAAGCTT+AGG | 0.481913 | 4_3:+63925253 | None:intergenic |
| AACAGGCTTCAAGGAAGTCT+TGG | 0.496511 | 4_3:+63924211 | None:intergenic |
| GTCCAAATACATAATGAAGA+TGG | 0.508607 | 4_3:+63922891 | None:intergenic |
| CTTCCATGGAAGTGGTTGAT+GGG | 0.520177 | 4_3:+63925233 | None:intergenic |
| AAGAAGTTTAAAATGGCTAA+AGG | 0.520775 | 4_3:-63924164 | Msa0655350:CDS |
| AGGCAGAGGCGGATAGCAGA+AGG | 0.531811 | 4_3:+63925563 | None:intergenic |
| TGCGAGAAGGAAAGAGGCAG+AGG | 0.534083 | 4_3:+63925549 | None:intergenic |
| AGTGGAAGTGGAAACTTCCA+TGG | 0.536646 | 4_3:+63925219 | None:intergenic |
| TGAGATCGAAGAGGGAGAAG+AGG | 0.542016 | 4_3:-63925366 | Msa0655350:CDS |
| CAAGATGTGGAGATGGCTGA+TGG | 0.544852 | 4_3:-63924242 | Msa0655350:intron |
| AAGACTTCCTTGAAGCCTGT+TGG | 0.560642 | 4_3:-63924209 | Msa0655350:CDS |
| AGTGAATGCGAGAAGGAAAG+AGG | 0.561309 | 4_3:+63925543 | None:intergenic |
| CACTATCAACAACAACGCCA+TGG | 0.564112 | 4_3:-63925200 | Msa0655350:CDS |
| CATGGAAGTGGTTGATGGGA+CGG | 0.567913 | 4_3:+63925237 | None:intergenic |
| ATAATGTTAGCACGGATAAG+TGG | 0.569893 | 4_3:-63922829 | Msa0655350:three_prime_UTR |
| GTTGTTGTTGATAGTGGAAG+TGG | 0.580441 | 4_3:+63925207 | None:intergenic |
| GCTAAAGGCAACCGCCGCAA+TGG | 0.582224 | 4_3:-63924149 | Msa0655350:CDS |
| TCAGGTTGTGTGAGGAACTG+AGG | 0.592185 | 4_3:+63922750 | None:intergenic |
| AGTGGAAACTTCCATGGAAG+TGG | 0.602761 | 4_3:+63925225 | None:intergenic |
| GAAGTCAATGAGATCGAAGA+GGG | 0.602910 | 4_3:-63925374 | Msa0655350:CDS |
| GCTTCGAAGTGAATGCGAGA+AGG | 0.605672 | 4_3:+63925536 | None:intergenic |
| ACTATCAACAACAACGCCAT+GGG | 0.608842 | 4_3:-63925199 | Msa0655350:intron |
| GAGAAGGAAAGAGGCAGAGG+CGG | 0.619103 | 4_3:+63925552 | None:intergenic |
| AAACTAATTCAGGTTGTGTG+AGG | 0.631983 | 4_3:+63922742 | None:intergenic |
| GGTACTCCATAATGTTAGCA+CGG | 0.640940 | 4_3:-63922837 | Msa0655350:three_prime_UTR |
| CGAAGTCAATGAGATCGAAG+AGG | 0.658126 | 4_3:-63925375 | Msa0655350:CDS |
| TTGGCTTTGAATTACCATTG+CGG | 0.667230 | 4_3:+63924135 | None:intergenic |
| GCTTTGAATTACCATTGCGG+CGG | 0.670430 | 4_3:+63924138 | None:intergenic |
| AATCTCAATGAATATGACCA+AGG | 0.673246 | 4_3:+63922692 | None:intergenic |
| TTCGAAGCTAAACCCTAACC+AGG | 0.676394 | 4_3:-63925521 | Msa0655350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAAATATAAAATT+GGG | + | chr4_3:63923937-63923956 | None:intergenic | 0.0% |
| !! | AATTAAAATAAATATAAAAT+TGG | + | chr4_3:63923938-63923957 | None:intergenic | 0.0% |
| !!! | ACATTTACAATATTTTAAAT+AGG | - | chr4_3:63923219-63923238 | Msa0655350:intron | 10.0% |
| !!! | TATTTATTTTAATTACGAAT+TGG | - | chr4_3:63923944-63923963 | Msa0655350:intron | 10.0% |
| !!! | TTTTTTGAAATTATTTAAGT+GGG | - | chr4_3:63924816-63924835 | Msa0655350:intron | 10.0% |
| !! | AATGAAATAAATACAAGAAA+GGG | + | chr4_3:63922782-63922801 | None:intergenic | 15.0% |
| !! | AGTAATAATATATCTATCTA+TGG | + | chr4_3:63923413-63923432 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAATTTCATAGT+TGG | - | chr4_3:63923749-63923768 | Msa0655350:intron | 15.0% |
| !! | ATTGAAAAAGAAGTTTAAAA+TGG | - | chr4_3:63924095-63924114 | Msa0655350:three_prime_UTR | 15.0% |
| !!! | GTTTTTTGAAATTATTTAAG+TGG | - | chr4_3:63924815-63924834 | Msa0655350:intron | 15.0% |
| !!! | TTTTTGAAATTATTTAAGTG+GGG | - | chr4_3:63924817-63924836 | Msa0655350:intron | 15.0% |
| !! | TTTAATCAAAAATTTAACAG+TGG | + | chr4_3:63925337-63925356 | None:intergenic | 15.0% |
| !! | GAATGAAATAAATACAAGAA+AGG | + | chr4_3:63922783-63922802 | None:intergenic | 20.0% |
| !! | GAAAATTGTATAAGTTAAAG+AGG | + | chr4_3:63922805-63922824 | None:intergenic | 20.0% |
| !! | GAAATTGAAAGAGTAAAAAA+TGG | - | chr4_3:63922868-63922887 | Msa0655350:three_prime_UTR | 20.0% |
| !! | TGAAATAAAAAAGGAAAAAG+TGG | + | chr4_3:63923095-63923114 | None:intergenic | 20.0% |
| !!! | TCCTTTTTTATTTCATTTTG+TGG | - | chr4_3:63923100-63923119 | Msa0655350:intron | 20.0% |
| !! | ACCACAAAATGAAATAAAAA+AGG | + | chr4_3:63923104-63923123 | None:intergenic | 20.0% |
| !! | TATTTACTTAGTACAAATGT+AGG | - | chr4_3:63923183-63923202 | Msa0655350:intron | 20.0% |
| !! | ATTTACTTAGTACAAATGTA+GGG | - | chr4_3:63923184-63923203 | Msa0655350:intron | 20.0% |
| !! | AACTACTTAAACAATAAAAG+TGG | + | chr4_3:63923325-63923344 | None:intergenic | 20.0% |
| !! | ATATATCTATCTATGGAATT+GGG | + | chr4_3:63923406-63923425 | None:intergenic | 20.0% |
| !! | AATATATCTATCTATGGAAT+TGG | + | chr4_3:63923407-63923426 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAAATCACA+TGG | + | chr4_3:63924344-63924363 | None:intergenic | 20.0% |
| !!! | CTTAAATGGATATATTTTTC+TGG | - | chr4_3:63924708-63924727 | Msa0655350:intron | 20.0% |
| !!! | AATAAATTGTAACTGATTTG+TGG | + | chr4_3:63924918-63924937 | None:intergenic | 20.0% |
| !! | GTTACAATTTATTTGTTTGT+AGG | - | chr4_3:63924925-63924944 | Msa0655350:intron | 20.0% |
| !! | TTTATTTGTTTGTAGGTATA+TGG | - | chr4_3:63924932-63924951 | Msa0655350:intron | 20.0% |
| !! | TTATTTGTTTGTAGGTATAT+GGG | - | chr4_3:63924933-63924952 | Msa0655350:intron | 20.0% |
| !!! | TACTGTTTTTAGATATATTG+AGG | - | chr4_3:63925408-63925427 | Msa0655350:intron | 20.0% |
| !! | TAGAAAATCAAAACTAATTC+AGG | + | chr4_3:63925537-63925556 | None:intergenic | 20.0% |
| ! | AAAACCCAATTCAATTTGAA+GGG | + | chr4_3:63923594-63923613 | None:intergenic | 25.0% |
| ! | AAAAACCCAATTCAATTTGA+AGG | + | chr4_3:63923595-63923614 | None:intergenic | 25.0% |
| !!! | AAAACAGAAATGGGTTTTTA+GGG | + | chr4_3:63923664-63923683 | None:intergenic | 25.0% |
| ! | ATCATAACAATAGCTTCAAA+AGG | + | chr4_3:63923695-63923714 | None:intergenic | 25.0% |
| ! | TTCAAAAGGAAAAACAACAA+AGG | + | chr4_3:63923815-63923834 | None:intergenic | 25.0% |
| ! | TTTAATTACGAATTGGCATT+TGG | - | chr4_3:63923951-63923970 | Msa0655350:intron | 25.0% |
| !!! | GTTTTTGAATTTTCAAGATG+TGG | - | chr4_3:63924011-63924030 | Msa0655350:intron | 25.0% |
| !! | AAGAAGTTTAAAATGGCTAA+AGG | - | chr4_3:63924102-63924121 | Msa0655350:exon | 25.0% |
| ! | CAAGATAAAAAGTAAAAACG+TGG | + | chr4_3:63924224-63924243 | None:intergenic | 25.0% |
| ! | TACATGAGTAAAGAAAACTA+AGG | + | chr4_3:63924264-63924283 | None:intergenic | 25.0% |
| ! | ATTTAACTAGTTCAAGTACA+AGG | + | chr4_3:63924546-63924565 | None:intergenic | 25.0% |
| ! | CAATTGCATCAATTTATTGT+CGG | - | chr4_3:63924568-63924587 | Msa0655350:intron | 25.0% |
| !! | ATTTATTGTCGGTTAAACTT+CGG | - | chr4_3:63924579-63924598 | Msa0655350:intron | 25.0% |
| ! | ATGTAATTCTGTAGCTTAAA+TGG | - | chr4_3:63924694-63924713 | Msa0655350:intron | 25.0% |
| ! | AAAACTTACTTTCATTGTTG+AGG | + | chr4_3:63924800-63924819 | None:intergenic | 25.0% |
| ! | GATTGTTTATCTGATTCATT+AGG | - | chr4_3:63924958-63924977 | Msa0655350:intron | 25.0% |
| ! | GGATAAGTTAAAAAGAGTAA+AGG | + | chr4_3:63925097-63925116 | None:intergenic | 25.0% |
| !! | CAAACAAAAGTATGGTAAAA+AGG | + | chr4_3:63925124-63925143 | None:intergenic | 25.0% |
| ! | GTAATTGTCAAACAAAAGTA+TGG | + | chr4_3:63925132-63925151 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGACAATTACTGA+TGG | - | chr4_3:63925135-63925154 | Msa0655350:intron | 25.0% |
| ! | TTTGTTTGACAATTACTGAT+GGG | - | chr4_3:63925136-63925155 | Msa0655350:intron | 25.0% |
| ! | AACCATCTTCATTATGTATT+TGG | - | chr4_3:63925373-63925392 | Msa0655350:CDS | 25.0% |
| ! | TTGTTTGTTGAAATTGAAGC+AGG | - | chr4_3:63922840-63922859 | Msa0655350:three_prime_UTR | 30.0% |
| ! | GTGTTATGTCTTTAGTTTAG+CGG | - | chr4_3:63923122-63923141 | Msa0655350:intron | 30.0% |
| ! | TGCATCACTCATTTTCTATT+GGG | + | chr4_3:63923269-63923288 | None:intergenic | 30.0% |
| ! | TTGCATCACTCATTTTCTAT+TGG | + | chr4_3:63923270-63923289 | None:intergenic | 30.0% |
| ACAATAAAAGTGGAGAACAA+AGG | + | chr4_3:63923315-63923334 | None:intergenic | 30.0% | |
| !!! | TTGTGTTGTTTGTTTTGGAA+GGG | + | chr4_3:63923443-63923462 | None:intergenic | 30.0% |
| !!! | TTTGTGTTGTTTGTTTTGGA+AGG | + | chr4_3:63923444-63923463 | None:intergenic | 30.0% |
| !!! | CTTGTTTGTGTTGTTTGTTT+TGG | + | chr4_3:63923448-63923467 | None:intergenic | 30.0% |
| GAAAGAGAAAGAGAAAAAGA+AGG | + | chr4_3:63923552-63923571 | None:intergenic | 30.0% | |
| !! | GAAAACAGAAATGGGTTTTT+AGG | + | chr4_3:63923665-63923684 | None:intergenic | 30.0% |
| ! | TTTCATAGTTGGAGTTTTCT+TGG | - | chr4_3:63923760-63923779 | Msa0655350:intron | 30.0% |
| GATAAAAAGTAAAAACGTGG+CGG | + | chr4_3:63924221-63924240 | None:intergenic | 30.0% | |
| ATTCTCATACATAAAGGTGA+TGG | + | chr4_3:63924287-63924306 | None:intergenic | 30.0% | |
| GTAGAGATTCTCATACATAA+AGG | + | chr4_3:63924293-63924312 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATAAGTAAGTTA+TGG | - | chr4_3:63924391-63924410 | Msa0655350:intron | 30.0% |
| AGTACTAATGCTAAGTGAAA+GGG | + | chr4_3:63924657-63924676 | None:intergenic | 30.0% | |
| TTCTATTTGCCAAAAACTAG+AGG | - | chr4_3:63924852-63924871 | Msa0655350:intron | 30.0% | |
| !!! | CCTTTAATACCTCTAGTTTT+TGG | + | chr4_3:63924864-63924883 | None:intergenic | 30.0% |
| !! | CCAAAAACTAGAGGTATTAA+AGG | - | chr4_3:63924861-63924880 | Msa0655350:intron | 30.0% |
| TATCTGATTCATTAGGTTTG+AGG | - | chr4_3:63924965-63924984 | Msa0655350:intron | 30.0% | |
| TAATAGCTGTGTATCAAATC+TGG | - | chr4_3:63925014-63925033 | Msa0655350:intron | 30.0% | |
| CTTTGTTACCTTTCTATTGT+AGG | - | chr4_3:63925245-63925264 | Msa0655350:CDS | 30.0% | |
| GTCCAAATACATAATGAAGA+TGG | + | chr4_3:63925378-63925397 | None:intergenic | 30.0% | |
| !! | ACTTGCATAATTTGTTACCT+TGG | - | chr4_3:63925557-63925576 | Msa0655350:five_prime_UTR | 30.0% |
| GTTGTTAGATTACCTGGTTA+GGG | + | chr4_3:63922760-63922779 | None:intergenic | 35.0% | |
| GCTTCTTTCTTGTCATAGAA+AGG | + | chr4_3:63922956-63922975 | None:intergenic | 35.0% | |
| AACAACACAAACAAGAAGCT+TGG | - | chr4_3:63923453-63923472 | Msa0655350:intron | 35.0% | |
| !! | TTTTGAAAGATCTGTCACAG+TGG | + | chr4_3:63923624-63923643 | None:intergenic | 35.0% |
| GCTTGGAAGAAAACAGAAAT+GGG | + | chr4_3:63923673-63923692 | None:intergenic | 35.0% | |
| AACAATAGCTTCAAAAGGCT+TGG | + | chr4_3:63923690-63923709 | None:intergenic | 35.0% | |
| !!! | GCACTGATTTTGTTTTTGCT+GGG | - | chr4_3:63923782-63923801 | Msa0655350:intron | 35.0% |
| !!! | CACTGATTTTGTTTTTGCTG+GGG | - | chr4_3:63923783-63923802 | Msa0655350:intron | 35.0% |
| !! | GAATTTTCAAGATGTGGAGA+TGG | - | chr4_3:63924017-63924036 | Msa0655350:intron | 35.0% |
| !! | TTGGCTTTGAATTACCATTG+CGG | + | chr4_3:63924134-63924153 | None:intergenic | 35.0% |
| ATTCCAATAGTGAGTGCTAA+TGG | - | chr4_3:63924173-63924192 | Msa0655350:CDS | 35.0% | |
| ATACCATTAGCACTCACTAT+TGG | + | chr4_3:63924179-63924198 | None:intergenic | 35.0% | |
| CTAAGGCATGAAATATGCAA+TGG | + | chr4_3:63924247-63924266 | None:intergenic | 35.0% | |
| TTACTTATTCCACTACTGAC+AGG | + | chr4_3:63924387-63924406 | None:intergenic | 35.0% | |
| GTGGAATAAGTAAGTTATGG+TGG | - | chr4_3:63924394-63924413 | Msa0655350:intron | 35.0% | |
| GTTAAGTTACAGGCATTTAG+GGG | + | chr4_3:63924503-63924522 | None:intergenic | 35.0% | |
| GGTTAAGTTACAGGCATTTA+GGG | + | chr4_3:63924504-63924523 | None:intergenic | 35.0% | |
| AGGTTAAGTTACAGGCATTT+AGG | + | chr4_3:63924505-63924524 | None:intergenic | 35.0% | |
| GAGTACTAATGCTAAGTGAA+AGG | + | chr4_3:63924658-63924677 | None:intergenic | 35.0% | |
| CTGGCAATATTTAGGAACTA+AGG | + | chr4_3:63924748-63924767 | None:intergenic | 35.0% | |
| ! | CAAATGTGCTGGCAATATTT+AGG | + | chr4_3:63924756-63924775 | None:intergenic | 35.0% |
| TTTGTTTGTAGGTATATGGG+AGG | - | chr4_3:63924936-63924955 | Msa0655350:intron | 35.0% | |
| AAAGTATGGTAAAAAGGACG+AGG | + | chr4_3:63925118-63925137 | None:intergenic | 35.0% | |
| TGTTACCTTTCTATTGTAGG+TGG | - | chr4_3:63925248-63925267 | Msa0655350:CDS | 35.0% | |
| GTTACCTTTCTATTGTAGGT+GGG | - | chr4_3:63925249-63925268 | Msa0655350:CDS | 35.0% | |
| TGCTATCTTCATTGTGTACT+GGG | - | chr4_3:63925295-63925314 | Msa0655350:CDS | 35.0% | |
| ACTTATCCGTGCTAACATTA+TGG | + | chr4_3:63925438-63925457 | None:intergenic | 35.0% | |
| ATAATGTTAGCACGGATAAG+TGG | - | chr4_3:63925437-63925456 | Msa0655350:intron | 35.0% | |
| !! | AAACTAATTCAGGTTGTGTG+AGG | + | chr4_3:63925527-63925546 | None:intergenic | 35.0% |
| GGTTGTTAGATTACCTGGTT+AGG | + | chr4_3:63922761-63922780 | None:intergenic | 40.0% | |
| GAAAGGGTTGTTAGATTACC+TGG | + | chr4_3:63922766-63922785 | None:intergenic | 40.0% | |
| GTTGAAATTGAAGCAGGAAG+TGG | - | chr4_3:63922846-63922865 | Msa0655350:three_prime_UTR | 40.0% | |
| GAAGTCAATGAGATCGAAGA+GGG | - | chr4_3:63922892-63922911 | Msa0655350:three_prime_UTR | 40.0% | |
| !! | GTTGTTGTTGATAGTGGAAG+TGG | + | chr4_3:63923062-63923081 | None:intergenic | 40.0% |
| ACTATCAACAACAACGCCAT+GGG | - | chr4_3:63923067-63923086 | Msa0655350:intron | 40.0% | |
| AAAGGAAAAAGTGGTACCCA+TGG | + | chr4_3:63923086-63923105 | None:intergenic | 40.0% | |
| TAATCACTGCCCTACTCTTT+CGG | + | chr4_3:63923356-63923375 | None:intergenic | 40.0% | |
| ACAAGAAGCTTGGAACTTGA+AGG | - | chr4_3:63923463-63923482 | Msa0655350:intron | 40.0% | |
| CTTTGATGAAAAGGAGTTGG+CGG | + | chr4_3:63923491-63923510 | None:intergenic | 40.0% | |
| ! | GCCAACTCCTTTTCATCAAA+GGG | - | chr4_3:63923490-63923509 | Msa0655350:intron | 40.0% |
| ! | CCAACTCCTTTTCATCAAAG+GGG | - | chr4_3:63923491-63923510 | Msa0655350:intron | 40.0% |
| ! | TCCTTTTCATCAAAGGGGTT+TGG | - | chr4_3:63923496-63923515 | Msa0655350:intron | 40.0% |
| TCCCTCCCTTCAAATTGAAT+TGG | - | chr4_3:63923586-63923605 | Msa0655350:intron | 40.0% | |
| CCCAATTCAATTTGAAGGGA+GGG | + | chr4_3:63923590-63923609 | None:intergenic | 40.0% | |
| CCCTCCCTTCAAATTGAATT+GGG | - | chr4_3:63923587-63923606 | Msa0655350:intron | 40.0% | |
| ACCCAATTCAATTTGAAGGG+AGG | + | chr4_3:63923591-63923610 | None:intergenic | 40.0% | |
| GGCTTGGAAGAAAACAGAAA+TGG | + | chr4_3:63923674-63923693 | None:intergenic | 40.0% | |
| !!! | GGCACTGATTTTGTTTTTGC+TGG | - | chr4_3:63923781-63923800 | Msa0655350:intron | 40.0% |
| !! | TTCCTTTTGAAGATTCAGCG+CGG | - | chr4_3:63923824-63923843 | Msa0655350:intron | 40.0% |
| TTCCTTGGAGTAGTCAATCA+CGG | + | chr4_3:63923872-63923891 | None:intergenic | 40.0% | |
| ATAAAACACGCTGTCTTCCT+TGG | + | chr4_3:63923887-63923906 | None:intergenic | 40.0% | |
| TATTCTACCAACAGGCTTCA+AGG | + | chr4_3:63924067-63924086 | None:intergenic | 40.0% | |
| ! | TTGAAGCCTGTTGGTAGAAT+AGG | - | chr4_3:63924066-63924085 | Msa0655350:intron | 40.0% |
| ! | TGAAGCCTGTTGGTAGAATA+GGG | - | chr4_3:63924067-63924086 | Msa0655350:intron | 40.0% |
| TTCTTCCCTATTCTACCAAC+AGG | + | chr4_3:63924075-63924094 | None:intergenic | 40.0% | |
| CATATGTGACGCTTTCTACT+TGG | + | chr4_3:63924153-63924172 | None:intergenic | 40.0% | |
| ! | GTAAAAACGTGGCGGAAAAT+AGG | + | chr4_3:63924213-63924232 | None:intergenic | 40.0% |
| CATCTTTATCCTGTCAGTAG+TGG | - | chr4_3:63924375-63924394 | Msa0655350:intron | 40.0% | |
| TTTGAGAGCAGCATATGTCT+TGG | + | chr4_3:63924429-63924448 | None:intergenic | 40.0% | |
| TATTGCCAGCACATTTGACT+CGG | - | chr4_3:63924759-63924778 | Msa0655350:intron | 40.0% | |
| AGGTATTAAAGGAAAAGCCG+AGG | - | chr4_3:63924872-63924891 | Msa0655350:intron | 40.0% | |
| GGTATTAAAGGAAAAGCCGA+GGG | - | chr4_3:63924873-63924892 | Msa0655350:intron | 40.0% | |
| !!! | GATGCTGTGCTGTTTTAATG+AGG | + | chr4_3:63925177-63925196 | None:intergenic | 40.0% |
| TTTCTATTGTAGGTGGGTCT+CGG | - | chr4_3:63925255-63925274 | Msa0655350:CDS | 40.0% | |
| GTGCTATCTTCATTGTGTAC+TGG | - | chr4_3:63925294-63925313 | Msa0655350:CDS | 40.0% | |
| GGTACTCCATAATGTTAGCA+CGG | - | chr4_3:63925429-63925448 | Msa0655350:intron | 40.0% | |
| AGTGAATGCGAGAAGGAAAG+AGG | + | chr4_3:63922726-63922745 | None:intergenic | 45.0% | |
| TTCGAAGCTAAACCCTAACC+AGG | - | chr4_3:63922745-63922764 | Msa0655350:three_prime_UTR | 45.0% | |
| CGAAGTCAATGAGATCGAAG+AGG | - | chr4_3:63922891-63922910 | Msa0655350:three_prime_UTR | 45.0% | |
| CTTCCATGGAAGTGGTTGAT+GGG | + | chr4_3:63923036-63923055 | None:intergenic | 45.0% | |
| ACTTCCATGGAAGTGGTTGA+TGG | + | chr4_3:63923037-63923056 | None:intergenic | 45.0% | |
| AGTGGAAACTTCCATGGAAG+TGG | + | chr4_3:63923044-63923063 | None:intergenic | 45.0% | |
| AGTGGAAGTGGAAACTTCCA+TGG | + | chr4_3:63923050-63923069 | None:intergenic | 45.0% | |
| ! | CATGGCGTTGTTGTTGATAG+TGG | + | chr4_3:63923068-63923087 | None:intergenic | 45.0% |
| CACTATCAACAACAACGCCA+TGG | - | chr4_3:63923066-63923085 | Msa0655350:intron | 45.0% | |
| GAAAGAGTAGGGCAGTGATT+AGG | - | chr4_3:63923355-63923374 | Msa0655350:intron | 45.0% | |
| ! | CGCCAACTCCTTTTCATCAA+AGG | - | chr4_3:63923489-63923508 | Msa0655350:intron | 45.0% |
| CCCCTTTGATGAAAAGGAGT+TGG | + | chr4_3:63923494-63923513 | None:intergenic | 45.0% | |
| GCCAAACCCCTTTGATGAAA+AGG | + | chr4_3:63923500-63923519 | None:intergenic | 45.0% | |
| ! | TCATCAAAGGGGTTTGGCTT+TGG | - | chr4_3:63923502-63923521 | Msa0655350:intron | 45.0% |
| CGAATTGGCATTTGGTTGCT+TGG | - | chr4_3:63923959-63923978 | Msa0655350:intron | 45.0% | |
| AACAGGCTTCAAGGAAGTCT+TGG | + | chr4_3:63924058-63924077 | None:intergenic | 45.0% | |
| AAGACTTCCTTGAAGCCTGT+TGG | - | chr4_3:63924057-63924076 | Msa0655350:intron | 45.0% | |
| ! | GCTTTGAATTACCATTGCGG+CGG | + | chr4_3:63924131-63924150 | None:intergenic | 45.0% |
| TGGTGTGGAGGTTAAGTTAC+AGG | + | chr4_3:63924513-63924532 | None:intergenic | 45.0% | |
| AAGTACAAGGCTTAGCACAG+TGG | + | chr4_3:63924533-63924552 | None:intergenic | 45.0% | |
| GAGACCCACCTACAATAGAA+AGG | + | chr4_3:63925256-63925275 | None:intergenic | 45.0% | |
| GCTTCGAAGTGAATGCGAGA+AGG | + | chr4_3:63922733-63922752 | None:intergenic | 50.0% | |
| TGAGATCGAAGAGGGAGAAG+AGG | - | chr4_3:63922900-63922919 | Msa0655350:three_prime_UTR | 50.0% | |
| TCTTGCTGCTCCTAAGCTTC+AGG | - | chr4_3:63923003-63923022 | Msa0655350:intron | 50.0% | |
| !! | CATGGAAGTGGTTGATGGGA+CGG | + | chr4_3:63923032-63923051 | None:intergenic | 50.0% |
| ! | TTTTGCCGAGCCGAAAGAGT+AGG | - | chr4_3:63923343-63923362 | Msa0655350:intron | 50.0% |
| TTTGCCGAGCCGAAAGAGTA+GGG | - | chr4_3:63923344-63923363 | Msa0655350:intron | 50.0% | |
| GGCAGTGATTAGGAAGAGAG+AGG | - | chr4_3:63923365-63923384 | Msa0655350:intron | 50.0% | |
| GTCCGCGCTGAATCTTCAAA+AGG | + | chr4_3:63923829-63923848 | None:intergenic | 50.0% | |
| GTCCGTGATTGACTACTCCA+AGG | - | chr4_3:63923867-63923886 | Msa0655350:intron | 50.0% | |
| CAAGATGTGGAGATGGCTGA+TGG | - | chr4_3:63924024-63924043 | Msa0655350:intron | 50.0% | |
| GACAACCGAGTCAAATGTGC+TGG | + | chr4_3:63924767-63924786 | None:intergenic | 50.0% | |
| ! | TCAGGTTGTGTGAGGAACTG+AGG | + | chr4_3:63925519-63925538 | None:intergenic | 50.0% |
| GAGAAGGAAAGAGGCAGAGG+CGG | + | chr4_3:63922717-63922736 | None:intergenic | 55.0% | |
| TGCGAGAAGGAAAGAGGCAG+AGG | + | chr4_3:63922720-63922739 | None:intergenic | 55.0% | |
| GGGACGGAAACCTGAAGCTT+AGG | + | chr4_3:63923016-63923035 | None:intergenic | 55.0% | |
| CGTCCCATCAACCACTTCCA+TGG | - | chr4_3:63923030-63923049 | Msa0655350:intron | 55.0% | |
| ACTGCCCTACTCTTTCGGCT+CGG | + | chr4_3:63923351-63923370 | None:intergenic | 55.0% | |
| AGGAAGAGAGAGGACTCGAG+TGG | - | chr4_3:63923375-63923394 | Msa0655350:intron | 55.0% | |
| GGAAGAGAGAGGACTCGAGT+GGG | - | chr4_3:63923376-63923395 | Msa0655350:intron | 55.0% | |
| CAAGGCTTAGCACAGTGGTG+TGG | + | chr4_3:63924528-63924547 | None:intergenic | 55.0% | |
| GCTAAAGGCAACCGCCGCAA+TGG | - | chr4_3:63924117-63924136 | Msa0655350:CDS | 60.0% | |
| GGCTTAGCACAGTGGTGTGG+AGG | + | chr4_3:63924525-63924544 | None:intergenic | 60.0% | |
| GCCAACGTCTTCAGAGCCCT+CGG | + | chr4_3:63924892-63924911 | None:intergenic | 60.0% | |
| !! | GCCGAGGGCTCTGAAGACGT+TGG | - | chr4_3:63924888-63924907 | Msa0655350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 63922706 | 63925582 | 63922706 | ID=Msa0655350;Name=Msa0655350 |
| chr4_3 | mRNA | 63922706 | 63925582 | 63922706 | ID=Msa0655350-mRNA-1;Parent=Msa0655350;Name=Msa0655350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=86|1|1|1|0.33|0.25|4|337|115 |
| chr4_3 | exon | 63922706 | 63923021 | 63922706 | ID=Msa0655350-mRNA-1:exon:18005;Parent=Msa0655350-mRNA-1 |
| chr4_3 | exon | 63924094 | 63924260 | 63924094 | ID=Msa0655350-mRNA-1:exon:18004;Parent=Msa0655350-mRNA-1 |
| chr4_3 | exon | 63925200 | 63925426 | 63925200 | ID=Msa0655350-mRNA-1:exon:18003;Parent=Msa0655350-mRNA-1 |
| chr4_3 | exon | 63925522 | 63925582 | 63925522 | ID=Msa0655350-mRNA-1:exon:18002;Parent=Msa0655350-mRNA-1 |
| chr4_3 | five_prime_UTR | 63925522 | 63925582 | 63925522 | ID=Msa0655350-mRNA-1:five_prime_utr;Parent=Msa0655350-mRNA-1 |
| chr4_3 | five_prime_UTR | 63925402 | 63925426 | 63925402 | ID=Msa0655350-mRNA-1:five_prime_utr;Parent=Msa0655350-mRNA-1 |
| chr4_3 | CDS | 63925200 | 63925401 | 63925200 | ID=Msa0655350-mRNA-1:cds;Parent=Msa0655350-mRNA-1 |
| chr4_3 | CDS | 63924115 | 63924260 | 63924115 | ID=Msa0655350-mRNA-1:cds;Parent=Msa0655350-mRNA-1 |
| chr4_3 | three_prime_UTR | 63924094 | 63924114 | 63924094 | ID=Msa0655350-mRNA-1:three_prime_utr;Parent=Msa0655350-mRNA-1 |
| chr4_3 | three_prime_UTR | 63922706 | 63923021 | 63922706 | ID=Msa0655350-mRNA-1:three_prime_utr;Parent=Msa0655350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
