Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562030 | XP_013457403.1 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 7.11e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562030 | A0A072UNP9 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 3.40e-53 | 172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032430 | Msa0562030 | 0.801436 | 9.012825e-49 | -8.615850e-47 |
| Msa0079380 | Msa0562030 | 0.800981 | 1.116769e-48 | -8.615850e-47 |
| Msa0116850 | Msa0562030 | 0.813760 | 2.174750e-51 | -8.615850e-47 |
| Msa0172070 | Msa0562030 | 0.801403 | 9.155819e-49 | -8.615850e-47 |
| Msa0271510 | Msa0562030 | 0.814283 | 1.667079e-51 | -8.615850e-47 |
| Msa0562030 | Msa0562950 | 0.804734 | 1.874259e-49 | -8.615850e-47 |
| Msa0562030 | Msa0563620 | 0.809997 | 1.434734e-50 | -8.615850e-47 |
| Msa0562030 | Msa0564390 | 0.820840 | 5.545985e-53 | -8.615850e-47 |
| Msa0562030 | Msa0655350 | 0.856861 | 2.416680e-62 | -8.615850e-47 |
| Msa0562030 | Msa1081980 | 0.833441 | 5.325036e-56 | -8.615850e-47 |
| Msa0562030 | Msa1162270 | 0.804139 | 2.492941e-49 | -8.615850e-47 |
| Msa0562030 | Msa1303450 | 0.822175 | 2.726680e-53 | -8.615850e-47 |
| Msa0562030 | Msa1382620 | 0.826708 | 2.339537e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562030 | MtrunA17_Chr4g0052901 | 95.652 | 115 | 5 | 0 | 1 | 115 | 1 | 115 | 6.54e-57 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATCTTCATTATGTATT+TGG | 0.145566 | 4_1:-61697740 | Msa0562030:three_prime_UTR |
| ACTTATCCGTGCTAACATTA+TGG | 0.295384 | 4_1:+61697678 | None:intergenic |
| TCTTGCTGCTCCTAAGCTTC+AGG | 0.303181 | 4_1:-61700106 | Msa0562030:CDS |
| GTGCTATCTTCATTGTGTAC+TGG | 0.320113 | 4_1:-61697819 | Msa0562030:three_prime_UTR |
| TTGAAGCCTGTTGGTAGAAT+AGG | 0.330969 | 4_1:-61699047 | Msa0562030:CDS |
| GGTTGTTAGATTACCTGGTT+AGG | 0.333605 | 4_1:+61700351 | None:intergenic |
| TTCTTCCCTATTCTACCAAC+AGG | 0.374239 | 4_1:+61699041 | None:intergenic |
| CATATGTGACGCTTTCTACT+TGG | 0.404049 | 4_1:+61698963 | None:intergenic |
| ATACCATTAGCACTCACTAT+TGG | 0.405698 | 4_1:+61698937 | None:intergenic |
| AGAGGCAGAGGCAGAGGCAG+AGG | 0.427989 | 4_1:+61700400 | None:intergenic |
| TGAAGCCTGTTGGTAGAATA+GGG | 0.429770 | 4_1:-61699046 | Msa0562030:CDS |
| TGCTATCTTCATTGTGTACT+GGG | 0.430891 | 4_1:-61697818 | Msa0562030:three_prime_UTR |
| TATTCTACCAACAGGCTTCA+AGG | 0.434559 | 4_1:+61699049 | None:intergenic |
| ATTCCAATAGTGAGTGCTAA+TGG | 0.435680 | 4_1:-61698940 | Msa0562030:intron |
| TTTCTATTGTAGGTGGGTCT+CGG | 0.435994 | 4_1:-61697858 | Msa0562030:intron |
| CATGGCGTTGTTGTTGATAG+TGG | 0.439825 | 4_1:+61700044 | None:intergenic |
| GCTTCTTTCTTGTCATAGAA+AGG | 0.440776 | 4_1:+61700156 | None:intergenic |
| CGAGAAAGAGGCAGAGGCAG+AGG | 0.465602 | 4_1:+61700394 | None:intergenic |
| ACTTCCATGGAAGTGGTTGA+TGG | 0.472045 | 4_1:+61700075 | None:intergenic |
| GTTGTTAGATTACCTGGTTA+GGG | 0.476702 | 4_1:+61700352 | None:intergenic |
| CGTCCCATCAACCACTTCCA+TGG | 0.478820 | 4_1:-61700079 | Msa0562030:CDS |
| GGGACGGAAACCTGAAGCTT+AGG | 0.481913 | 4_1:+61700096 | None:intergenic |
| TCAAAGTGAATGCGAGAAAG+AGG | 0.500364 | 4_1:+61700382 | None:intergenic |
| GTCCAAATACATAATGAAGA+TGG | 0.508607 | 4_1:+61697738 | None:intergenic |
| CTTCCATGGAAGTGGTTGAT+GGG | 0.520177 | 4_1:+61700076 | None:intergenic |
| AAGAAGTTTAAAATGGCTAA+AGG | 0.520775 | 4_1:-61699011 | Msa0562030:CDS |
| AGTGGAAGTGGAAACTTCCA+TGG | 0.536646 | 4_1:+61700062 | None:intergenic |
| TGAGATCGAAGAGGGAGAAG+AGG | 0.542016 | 4_1:-61700209 | Msa0562030:CDS |
| CAAGATGTGGAGATGGCTGA+TGG | 0.544852 | 4_1:-61699089 | Msa0562030:intron |
| CTAATCCATGTTCTTGAATG+TGG | 0.554351 | 4_1:-61697602 | Msa0562030:three_prime_UTR |
| AAGACTTCCTTGAAGCCTGT+TGG | 0.560642 | 4_1:-61699056 | Msa0562030:CDS |
| CACTATCAACAACAACGCCA+TGG | 0.564112 | 4_1:-61700043 | Msa0562030:CDS |
| TGAATGCGAGAAAGAGGCAG+AGG | 0.565082 | 4_1:+61700388 | None:intergenic |
| AAATTCCACATTCAAGAACA+TGG | 0.565574 | 4_1:+61697597 | None:intergenic |
| CATGGAAGTGGTTGATGGGA+CGG | 0.567913 | 4_1:+61700080 | None:intergenic |
| ATAATGTTAGCACGGATAAG+TGG | 0.569893 | 4_1:-61697676 | Msa0562030:three_prime_UTR |
| GTTGTTGTTGATAGTGGAAG+TGG | 0.580441 | 4_1:+61700050 | None:intergenic |
| GCTAAAGGCAACCGCCGCAA+TGG | 0.582224 | 4_1:-61698996 | Msa0562030:CDS |
| AGTGGAAACTTCCATGGAAG+TGG | 0.602761 | 4_1:+61700068 | None:intergenic |
| GAAGTCAATGAGATCGAAGA+GGG | 0.602910 | 4_1:-61700217 | Msa0562030:CDS |
| ACTATCAACAACAACGCCAT+GGG | 0.608842 | 4_1:-61700042 | Msa0562030:intron |
| GGTACTCCATAATGTTAGCA+CGG | 0.640940 | 4_1:-61697684 | Msa0562030:three_prime_UTR |
| TATCACTAGAGTAGTTCGCA+TGG | 0.649841 | 4_1:-61697572 | Msa0562030:three_prime_UTR |
| CGAAGTCAATGAGATCGAAG+AGG | 0.658126 | 4_1:-61700218 | Msa0562030:CDS |
| TTGGCTTTGAATTACCATTG+CGG | 0.667230 | 4_1:+61698982 | None:intergenic |
| GCTTTGAATTACCATTGCGG+CGG | 0.670430 | 4_1:+61698985 | None:intergenic |
| TTTGACGCTAAACCCTAACC+AGG | 0.698703 | 4_1:-61700364 | Msa0562030:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAAATATAAAATT+GGG | + | chr4_1:61698790-61698809 | None:intergenic | 0.0% |
| !! | AATTAAAATAAATATAAAAT+TGG | + | chr4_1:61698791-61698810 | None:intergenic | 0.0% |
| !!! | ACATTTACAATATTTTAAAT+AGG | - | chr4_1:61698076-61698095 | Msa0562030:intron | 10.0% |
| !!! | TATTTATTTTAATTACGAAT+TGG | - | chr4_1:61698797-61698816 | Msa0562030:intron | 10.0% |
| !!! | TTTTTTGAAATTATTTAAGT+GGG | - | chr4_1:61699669-61699688 | Msa0562030:intron | 10.0% |
| !! | AATGAAATAAATAGAAGAAA+GGG | + | chr4_1:61697639-61697658 | None:intergenic | 15.0% |
| !! | AGTAATAATATATCTATCTA+TGG | + | chr4_1:61698270-61698289 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAATTTCATAGT+TGG | - | chr4_1:61698602-61698621 | Msa0562030:intron | 15.0% |
| !! | ATTGAAAAAGAAGTTTAAAA+TGG | - | chr4_1:61698948-61698967 | Msa0562030:exon | 15.0% |
| !!! | CTTTTTTGAAATTATTTAAG+TGG | - | chr4_1:61699668-61699687 | Msa0562030:intron | 15.0% |
| !!! | TTTTTGAAATTATTTAAGTG+GGG | - | chr4_1:61699670-61699689 | Msa0562030:intron | 15.0% |
| !! | TTTAATCAAAAATTTAACAG+TGG | + | chr4_1:61700190-61700209 | None:intergenic | 15.0% |
| !! | GAATGAAATAAATAGAAGAA+AGG | + | chr4_1:61697640-61697659 | None:intergenic | 20.0% |
| !! | GAAAATTGTATAAGTTAAAG+AGG | + | chr4_1:61697662-61697681 | None:intergenic | 20.0% |
| !! | GAAATTGAAAGAGTAAAAAA+TGG | - | chr4_1:61697725-61697744 | Msa0562030:three_prime_UTR | 20.0% |
| !! | TGAAATAAAAAAGGAAAAAG+TGG | + | chr4_1:61697952-61697971 | None:intergenic | 20.0% |
| !!! | TCCTTTTTTATTTCATTTTG+TGG | - | chr4_1:61697957-61697976 | Msa0562030:intron | 20.0% |
| !! | ACCACAAAATGAAATAAAAA+AGG | + | chr4_1:61697961-61697980 | None:intergenic | 20.0% |
| !! | ATATATCTATCTATGGAATT+GGG | + | chr4_1:61698263-61698282 | None:intergenic | 20.0% |
| !! | AATATATCTATCTATGGAAT+TGG | + | chr4_1:61698264-61698283 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTAAATCACA+TGG | + | chr4_1:61699197-61699216 | None:intergenic | 20.0% |
| !!! | CTTAAATGGATATATTTTTC+TGG | - | chr4_1:61699561-61699580 | Msa0562030:intron | 20.0% |
| !!! | AATAAATTGTAACTGATTTG+TGG | + | chr4_1:61699771-61699790 | None:intergenic | 20.0% |
| !! | GTTACAATTTATTTGTTTGT+AGG | - | chr4_1:61699778-61699797 | Msa0562030:intron | 20.0% |
| !! | TTTATTTGTTTGTAGGTATA+TGG | - | chr4_1:61699785-61699804 | Msa0562030:intron | 20.0% |
| !! | TTATTTGTTTGTAGGTATAT+GGG | - | chr4_1:61699786-61699805 | Msa0562030:intron | 20.0% |
| !!! | TACTGTTTTTAGATATATTG+AGG | - | chr4_1:61700261-61700280 | Msa0562030:intron | 20.0% |
| ! | TATTTACTTGGTACAAATGT+AGG | - | chr4_1:61698040-61698059 | Msa0562030:intron | 25.0% |
| ! | ATTTACTTGGTACAAATGTA+GGG | - | chr4_1:61698041-61698060 | Msa0562030:intron | 25.0% |
| ! | ACAATAAAAGTGAAGAACAA+AGG | + | chr4_1:61698172-61698191 | None:intergenic | 25.0% |
| ! | AAAACCCAATTCAATTTGAA+GGG | + | chr4_1:61698445-61698464 | None:intergenic | 25.0% |
| ! | AAAAACCCAATTCAATTTGA+AGG | + | chr4_1:61698446-61698465 | None:intergenic | 25.0% |
| !!! | AAAACAGAAATGGGTTTTTA+GGG | + | chr4_1:61698517-61698536 | None:intergenic | 25.0% |
| ! | ATCATAACAATAGCTTCAAA+AGG | + | chr4_1:61698548-61698567 | None:intergenic | 25.0% |
| ! | TTCAAAAGGAAAAACAACAA+AGG | + | chr4_1:61698668-61698687 | None:intergenic | 25.0% |
| ! | TTTAATTACGAATTGGCATT+TGG | - | chr4_1:61698804-61698823 | Msa0562030:intron | 25.0% |
| !!! | GTTTTTGAATTTTCAAGATG+TGG | - | chr4_1:61698864-61698883 | Msa0562030:intron | 25.0% |
| !! | AAGAAGTTTAAAATGGCTAA+AGG | - | chr4_1:61698955-61698974 | Msa0562030:exon | 25.0% |
| ! | CAAGATAAAAAGTAAAAACG+TGG | + | chr4_1:61699077-61699096 | None:intergenic | 25.0% |
| ! | TACATGAGTAAAGAAAACTA+AGG | + | chr4_1:61699117-61699136 | None:intergenic | 25.0% |
| ! | ATTTAACTAGTTCAAGTACA+AGG | + | chr4_1:61699399-61699418 | None:intergenic | 25.0% |
| ! | CAATTGCATCAATTTATTGT+CGG | - | chr4_1:61699421-61699440 | Msa0562030:intron | 25.0% |
| !! | ATTTATTGTCGGTTAAACTT+CGG | - | chr4_1:61699432-61699451 | Msa0562030:intron | 25.0% |
| ! | ATGTAATTCTGTAGCTTAAA+TGG | - | chr4_1:61699547-61699566 | Msa0562030:intron | 25.0% |
| !! | AAAAGTTACTTTCATTGTTG+AGG | + | chr4_1:61699653-61699672 | None:intergenic | 25.0% |
| ! | GATTGTTTATCTGATTCATT+AGG | - | chr4_1:61699811-61699830 | Msa0562030:intron | 25.0% |
| ! | GGATAAGTTAAAAAGAGTAA+AGG | + | chr4_1:61699950-61699969 | None:intergenic | 25.0% |
| !! | CAAACAAAAGTATGGTAAAA+AGG | + | chr4_1:61699977-61699996 | None:intergenic | 25.0% |
| ! | GTAATTGTCAAACAAAAGTA+TGG | + | chr4_1:61699985-61700004 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGACAATTACTGA+TGG | - | chr4_1:61699988-61700007 | Msa0562030:intron | 25.0% |
| ! | TTTGTTTGACAATTACTGAT+GGG | - | chr4_1:61699989-61700008 | Msa0562030:intron | 25.0% |
| ! | AACCATCTTCATTATGTATT+TGG | - | chr4_1:61700226-61700245 | Msa0562030:exon | 25.0% |
| ! | TTGTTTGTTGAAATTGAAGC+AGG | - | chr4_1:61697697-61697716 | Msa0562030:three_prime_UTR | 30.0% |
| ! | GTGTTATGTCTTTAGTTTAG+CGG | - | chr4_1:61697979-61697998 | Msa0562030:intron | 30.0% |
| GCATTCTGCAATTATTTACT+TGG | - | chr4_1:61698028-61698047 | Msa0562030:intron | 30.0% | |
| ! | TGCATCACTCATTTTCTATT+GGG | + | chr4_1:61698126-61698145 | None:intergenic | 30.0% |
| ! | TTGCATCACTCATTTTCTAT+TGG | + | chr4_1:61698127-61698146 | None:intergenic | 30.0% |
| !!! | TTGTGTTGTTTGTTTTGGAA+GGG | + | chr4_1:61698300-61698319 | None:intergenic | 30.0% |
| !!! | TTTGTGTTGTTTGTTTTGGA+AGG | + | chr4_1:61698301-61698320 | None:intergenic | 30.0% |
| !!! | CTTGTTTGTGTTGTTTGTTT+TGG | + | chr4_1:61698305-61698324 | None:intergenic | 30.0% |
| GAAAGAGAAAGAGAAAAAGA+AGG | + | chr4_1:61698409-61698428 | None:intergenic | 30.0% | |
| !! | GAAAACAGAAATGGGTTTTT+AGG | + | chr4_1:61698518-61698537 | None:intergenic | 30.0% |
| ! | TTTCATAGTTGGAGTTTTCT+TGG | - | chr4_1:61698613-61698632 | Msa0562030:intron | 30.0% |
| GATAAAAAGTAAAAACGTGG+CGG | + | chr4_1:61699074-61699093 | None:intergenic | 30.0% | |
| ATTCTCATACATAAAGGTGA+TGG | + | chr4_1:61699140-61699159 | None:intergenic | 30.0% | |
| GTAGAGATTCTCATACATAA+AGG | + | chr4_1:61699146-61699165 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATAAGTAAGTTA+TGG | - | chr4_1:61699244-61699263 | Msa0562030:intron | 30.0% |
| AGTACTAATGCTAAGTGAAA+GGG | + | chr4_1:61699510-61699529 | None:intergenic | 30.0% | |
| TTCTATTTGCCAAAAACTAG+AGG | - | chr4_1:61699705-61699724 | Msa0562030:intron | 30.0% | |
| !!! | CCTTTAATACCTCTAGTTTT+TGG | + | chr4_1:61699717-61699736 | None:intergenic | 30.0% |
| !! | CCAAAAACTAGAGGTATTAA+AGG | - | chr4_1:61699714-61699733 | Msa0562030:intron | 30.0% |
| TATCTGATTCATTAGGTTTG+AGG | - | chr4_1:61699818-61699837 | Msa0562030:intron | 30.0% | |
| TAATAGCTGTGTATCAAATC+TGG | - | chr4_1:61699867-61699886 | Msa0562030:intron | 30.0% | |
| CTTTGTTACCTTTCTATTGT+AGG | - | chr4_1:61700098-61700117 | Msa0562030:CDS | 30.0% | |
| GTCCAAATACATAATGAAGA+TGG | + | chr4_1:61700231-61700250 | None:intergenic | 30.0% | |
| AAATTCCACATTCAAGAACA+TGG | + | chr4_1:61700372-61700391 | None:intergenic | 30.0% | |
| GTTGTTAGATTACCTGGTTA+GGG | + | chr4_1:61697617-61697636 | None:intergenic | 35.0% | |
| GCTTCTTTCTTGTCATAGAA+AGG | + | chr4_1:61697813-61697832 | None:intergenic | 35.0% | |
| AACAACACAAACAAGAAGCT+TGG | - | chr4_1:61698310-61698329 | Msa0562030:intron | 35.0% | |
| !! | TTTTGAAAGATCTGTCACAG+TGG | + | chr4_1:61698477-61698496 | None:intergenic | 35.0% |
| GCTTGGAAGAAAACAGAAAT+GGG | + | chr4_1:61698526-61698545 | None:intergenic | 35.0% | |
| AACAATAGCTTCAAAAGGCT+TGG | + | chr4_1:61698543-61698562 | None:intergenic | 35.0% | |
| !!! | GCACTGATTTTGTTTTTGCT+GGG | - | chr4_1:61698635-61698654 | Msa0562030:intron | 35.0% |
| !!! | CACTGATTTTGTTTTTGCTG+GGG | - | chr4_1:61698636-61698655 | Msa0562030:intron | 35.0% |
| !! | GAATTTTCAAGATGTGGAGA+TGG | - | chr4_1:61698870-61698889 | Msa0562030:intron | 35.0% |
| !! | TTGGCTTTGAATTACCATTG+CGG | + | chr4_1:61698987-61699006 | None:intergenic | 35.0% |
| ATTCCAATAGTGAGTGCTAA+TGG | - | chr4_1:61699026-61699045 | Msa0562030:CDS | 35.0% | |
| ATACCATTAGCACTCACTAT+TGG | + | chr4_1:61699032-61699051 | None:intergenic | 35.0% | |
| CTAAGGCATGAAATATGCAA+TGG | + | chr4_1:61699100-61699119 | None:intergenic | 35.0% | |
| TTACTTATTCCACTACTGAC+AGG | + | chr4_1:61699240-61699259 | None:intergenic | 35.0% | |
| GTGGAATAAGTAAGTTATGG+TGG | - | chr4_1:61699247-61699266 | Msa0562030:intron | 35.0% | |
| GTTAAGTTACAGGCATTTAG+GGG | + | chr4_1:61699356-61699375 | None:intergenic | 35.0% | |
| GGTTAAGTTACAGGCATTTA+GGG | + | chr4_1:61699357-61699376 | None:intergenic | 35.0% | |
| AGGTTAAGTTACAGGCATTT+AGG | + | chr4_1:61699358-61699377 | None:intergenic | 35.0% | |
| GAGTACTAATGCTAAGTGAA+AGG | + | chr4_1:61699511-61699530 | None:intergenic | 35.0% | |
| CTGGCAATATTTAGGAACTA+AGG | + | chr4_1:61699601-61699620 | None:intergenic | 35.0% | |
| ! | CAAATGTGCTGGCAATATTT+AGG | + | chr4_1:61699609-61699628 | None:intergenic | 35.0% |
| TTTGTTTGTAGGTATATGGG+AGG | - | chr4_1:61699789-61699808 | Msa0562030:intron | 35.0% | |
| AAAGTATGGTAAAAAGGACG+AGG | + | chr4_1:61699971-61699990 | None:intergenic | 35.0% | |
| TGTTACCTTTCTATTGTAGG+TGG | - | chr4_1:61700101-61700120 | Msa0562030:CDS | 35.0% | |
| GTTACCTTTCTATTGTAGGT+GGG | - | chr4_1:61700102-61700121 | Msa0562030:CDS | 35.0% | |
| TGCTATCTTCATTGTGTACT+GGG | - | chr4_1:61700148-61700167 | Msa0562030:CDS | 35.0% | |
| ACTTATCCGTGCTAACATTA+TGG | + | chr4_1:61700291-61700310 | None:intergenic | 35.0% | |
| ATAATGTTAGCACGGATAAG+TGG | - | chr4_1:61700290-61700309 | Msa0562030:intron | 35.0% | |
| CTAATCCATGTTCTTGAATG+TGG | - | chr4_1:61700364-61700383 | Msa0562030:intron | 35.0% | |
| TCAAAGTGAATGCGAGAAAG+AGG | + | chr4_1:61697587-61697606 | None:intergenic | 40.0% | |
| GGTTGTTAGATTACCTGGTT+AGG | + | chr4_1:61697618-61697637 | None:intergenic | 40.0% | |
| GAAAGGGTTGTTAGATTACC+TGG | + | chr4_1:61697623-61697642 | None:intergenic | 40.0% | |
| GTTGAAATTGAAGCAGGAAG+TGG | - | chr4_1:61697703-61697722 | Msa0562030:three_prime_UTR | 40.0% | |
| GAAGTCAATGAGATCGAAGA+GGG | - | chr4_1:61697749-61697768 | Msa0562030:three_prime_UTR | 40.0% | |
| !! | GTTGTTGTTGATAGTGGAAG+TGG | + | chr4_1:61697919-61697938 | None:intergenic | 40.0% |
| ACTATCAACAACAACGCCAT+GGG | - | chr4_1:61697924-61697943 | Msa0562030:intron | 40.0% | |
| AAAGGAAAAAGTGGTACCCA+TGG | + | chr4_1:61697943-61697962 | None:intergenic | 40.0% | |
| TAATCACTGCCCTACTCTTT+CGG | + | chr4_1:61698213-61698232 | None:intergenic | 40.0% | |
| ACAAGAAGCTTGGAACTTGA+AGG | - | chr4_1:61698320-61698339 | Msa0562030:intron | 40.0% | |
| CTTTGATGAAAAGGAGTTGG+CGG | + | chr4_1:61698348-61698367 | None:intergenic | 40.0% | |
| ! | GCCAACTCCTTTTCATCAAA+GGG | - | chr4_1:61698347-61698366 | Msa0562030:intron | 40.0% |
| ! | CCAACTCCTTTTCATCAAAG+GGG | - | chr4_1:61698348-61698367 | Msa0562030:intron | 40.0% |
| ! | TCCTTTTCATCAAAGGGGTT+TGG | - | chr4_1:61698353-61698372 | Msa0562030:intron | 40.0% |
| TCCCTCCCTTCAAATTGAAT+TGG | - | chr4_1:61698437-61698456 | Msa0562030:intron | 40.0% | |
| CCCAATTCAATTTGAAGGGA+GGG | + | chr4_1:61698441-61698460 | None:intergenic | 40.0% | |
| CCCTCCCTTCAAATTGAATT+GGG | - | chr4_1:61698438-61698457 | Msa0562030:intron | 40.0% | |
| ACCCAATTCAATTTGAAGGG+AGG | + | chr4_1:61698442-61698461 | None:intergenic | 40.0% | |
| GGCTTGGAAGAAAACAGAAA+TGG | + | chr4_1:61698527-61698546 | None:intergenic | 40.0% | |
| !!! | GGCACTGATTTTGTTTTTGC+TGG | - | chr4_1:61698634-61698653 | Msa0562030:intron | 40.0% |
| !! | TTCCTTTTGAAGATTCAGCG+CGG | - | chr4_1:61698677-61698696 | Msa0562030:intron | 40.0% |
| TTCCTTGGAGTAGTCAATCA+CGG | + | chr4_1:61698725-61698744 | None:intergenic | 40.0% | |
| ATAAAACACGCTGTCTTCCT+TGG | + | chr4_1:61698740-61698759 | None:intergenic | 40.0% | |
| TATTCTACCAACAGGCTTCA+AGG | + | chr4_1:61698920-61698939 | None:intergenic | 40.0% | |
| ! | TTGAAGCCTGTTGGTAGAAT+AGG | - | chr4_1:61698919-61698938 | Msa0562030:intron | 40.0% |
| ! | TGAAGCCTGTTGGTAGAATA+GGG | - | chr4_1:61698920-61698939 | Msa0562030:intron | 40.0% |
| TTCTTCCCTATTCTACCAAC+AGG | + | chr4_1:61698928-61698947 | None:intergenic | 40.0% | |
| CATATGTGACGCTTTCTACT+TGG | + | chr4_1:61699006-61699025 | None:intergenic | 40.0% | |
| ! | GTAAAAACGTGGCGGAAAAT+AGG | + | chr4_1:61699066-61699085 | None:intergenic | 40.0% |
| CATCTTTATCCTGTCAGTAG+TGG | - | chr4_1:61699228-61699247 | Msa0562030:intron | 40.0% | |
| TTTGAGAGCAGCATATGTCT+TGG | + | chr4_1:61699282-61699301 | None:intergenic | 40.0% | |
| TGGTGTGAAGGTTAAGTTAC+AGG | + | chr4_1:61699366-61699385 | None:intergenic | 40.0% | |
| TATTGCCAGCACATTTGACT+CGG | - | chr4_1:61699612-61699631 | Msa0562030:intron | 40.0% | |
| AGGTATTAAAGGAAAAGCCG+AGG | - | chr4_1:61699725-61699744 | Msa0562030:intron | 40.0% | |
| GGTATTAAAGGAAAAGCCGA+GGG | - | chr4_1:61699726-61699745 | Msa0562030:intron | 40.0% | |
| !!! | GATGCTGTGCTGTTTTAATG+AGG | + | chr4_1:61700030-61700049 | None:intergenic | 40.0% |
| TTTCTATTGTAGGTGGGTCT+CGG | - | chr4_1:61700108-61700127 | Msa0562030:CDS | 40.0% | |
| GTGCTATCTTCATTGTGTAC+TGG | - | chr4_1:61700147-61700166 | Msa0562030:CDS | 40.0% | |
| GGTACTCCATAATGTTAGCA+CGG | - | chr4_1:61700282-61700301 | Msa0562030:intron | 40.0% | |
| TATCACTAGAGTAGTTCGCA+TGG | - | chr4_1:61700394-61700413 | Msa0562030:five_prime_UTR | 40.0% | |
| TTTGACGCTAAACCCTAACC+AGG | - | chr4_1:61697602-61697621 | Msa0562030:three_prime_UTR | 45.0% | |
| CGAAGTCAATGAGATCGAAG+AGG | - | chr4_1:61697748-61697767 | Msa0562030:three_prime_UTR | 45.0% | |
| CTTCCATGGAAGTGGTTGAT+GGG | + | chr4_1:61697893-61697912 | None:intergenic | 45.0% | |
| ACTTCCATGGAAGTGGTTGA+TGG | + | chr4_1:61697894-61697913 | None:intergenic | 45.0% | |
| AGTGGAAACTTCCATGGAAG+TGG | + | chr4_1:61697901-61697920 | None:intergenic | 45.0% | |
| AGTGGAAGTGGAAACTTCCA+TGG | + | chr4_1:61697907-61697926 | None:intergenic | 45.0% | |
| ! | CATGGCGTTGTTGTTGATAG+TGG | + | chr4_1:61697925-61697944 | None:intergenic | 45.0% |
| CACTATCAACAACAACGCCA+TGG | - | chr4_1:61697923-61697942 | Msa0562030:intron | 45.0% | |
| GAAAGAGTAGGGCAGTGATT+AGG | - | chr4_1:61698212-61698231 | Msa0562030:intron | 45.0% | |
| ! | CGCCAACTCCTTTTCATCAA+AGG | - | chr4_1:61698346-61698365 | Msa0562030:intron | 45.0% |
| CCCCTTTGATGAAAAGGAGT+TGG | + | chr4_1:61698351-61698370 | None:intergenic | 45.0% | |
| GCCAAACCCCTTTGATGAAA+AGG | + | chr4_1:61698357-61698376 | None:intergenic | 45.0% | |
| ! | TCATCAAAGGGGTTTGGCTT+TGG | - | chr4_1:61698359-61698378 | Msa0562030:intron | 45.0% |
| CGAATTGGCATTTGGTTGCT+TGG | - | chr4_1:61698812-61698831 | Msa0562030:intron | 45.0% | |
| AAGACTTCCTTGAAGCCTGT+TGG | - | chr4_1:61698910-61698929 | Msa0562030:intron | 45.0% | |
| ! | GCTTTGAATTACCATTGCGG+CGG | + | chr4_1:61698984-61699003 | None:intergenic | 45.0% |
| AAGTACAAGGCTTAGCACAG+TGG | + | chr4_1:61699386-61699405 | None:intergenic | 45.0% | |
| GAGACCCACCTACAATAGAA+AGG | + | chr4_1:61700109-61700128 | None:intergenic | 45.0% | |
| TGAATGCGAGAAAGAGGCAG+AGG | + | chr4_1:61697581-61697600 | None:intergenic | 50.0% | |
| TGAGATCGAAGAGGGAGAAG+AGG | - | chr4_1:61697757-61697776 | Msa0562030:three_prime_UTR | 50.0% | |
| TCTTGCTGCTCCTAAGCTTC+AGG | - | chr4_1:61697860-61697879 | Msa0562030:intron | 50.0% | |
| !! | CATGGAAGTGGTTGATGGGA+CGG | + | chr4_1:61697889-61697908 | None:intergenic | 50.0% |
| ! | TTTTGCCGAGCCGAAAGAGT+AGG | - | chr4_1:61698200-61698219 | Msa0562030:intron | 50.0% |
| TTTGCCGAGCCGAAAGAGTA+GGG | - | chr4_1:61698201-61698220 | Msa0562030:intron | 50.0% | |
| GGCAGTGATTAGGAAGAGAG+AGG | - | chr4_1:61698222-61698241 | Msa0562030:intron | 50.0% | |
| GTCCGCGCTGAATCTTCAAA+AGG | + | chr4_1:61698682-61698701 | None:intergenic | 50.0% | |
| GTCCGTGATTGACTACTCCA+AGG | - | chr4_1:61698720-61698739 | Msa0562030:intron | 50.0% | |
| CAAGATGTGGAGATGGCTGA+TGG | - | chr4_1:61698877-61698896 | Msa0562030:intron | 50.0% | |
| GACAACCGAGTCAAATGTGC+TGG | + | chr4_1:61699620-61699639 | None:intergenic | 50.0% | |
| GGGACGGAAACCTGAAGCTT+AGG | + | chr4_1:61697873-61697892 | None:intergenic | 55.0% | |
| CGTCCCATCAACCACTTCCA+TGG | - | chr4_1:61697887-61697906 | Msa0562030:intron | 55.0% | |
| ACTGCCCTACTCTTTCGGCT+CGG | + | chr4_1:61698208-61698227 | None:intergenic | 55.0% | |
| AGGAAGAGAGAGGACTCGAG+TGG | - | chr4_1:61698232-61698251 | Msa0562030:intron | 55.0% | |
| GGAAGAGAGAGGACTCGAGT+GGG | - | chr4_1:61698233-61698252 | Msa0562030:intron | 55.0% | |
| GGCTTAGCACAGTGGTGTGA+AGG | + | chr4_1:61699378-61699397 | None:intergenic | 55.0% | |
| CGAGAAAGAGGCAGAGGCAG+AGG | + | chr4_1:61697575-61697594 | None:intergenic | 60.0% | |
| GCTAAAGGCAACCGCCGCAA+TGG | - | chr4_1:61698970-61698989 | Msa0562030:CDS | 60.0% | |
| GCCAACGTCTTCAGAGCCCT+CGG | + | chr4_1:61699745-61699764 | None:intergenic | 60.0% | |
| AGAGGCAGAGGCAGAGGCAG+AGG | + | chr4_1:61697563-61697582 | None:intergenic | 65.0% | |
| !! | GCCGAGGGCTCTGAAGACGT+TGG | - | chr4_1:61699741-61699760 | Msa0562030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61697558 | 61700430 | 61697558 | ID=Msa0562030;Name=Msa0562030 |
| chr4_1 | mRNA | 61697558 | 61700430 | 61697558 | ID=Msa0562030-mRNA-1;Parent=Msa0562030;Name=Msa0562030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=91|1|1|1|0.33|0.25|4|332|115 |
| chr4_1 | exon | 61697558 | 61697868 | 61697558 | ID=Msa0562030-mRNA-1:exon:19483;Parent=Msa0562030-mRNA-1 |
| chr4_1 | exon | 61698941 | 61699107 | 61698941 | ID=Msa0562030-mRNA-1:exon:19482;Parent=Msa0562030-mRNA-1 |
| chr4_1 | exon | 61700043 | 61700269 | 61700043 | ID=Msa0562030-mRNA-1:exon:19481;Parent=Msa0562030-mRNA-1 |
| chr4_1 | exon | 61700365 | 61700430 | 61700365 | ID=Msa0562030-mRNA-1:exon:19480;Parent=Msa0562030-mRNA-1 |
| chr4_1 | five_prime_UTR | 61700365 | 61700430 | 61700365 | ID=Msa0562030-mRNA-1:five_prime_utr;Parent=Msa0562030-mRNA-1 |
| chr4_1 | five_prime_UTR | 61700245 | 61700269 | 61700245 | ID=Msa0562030-mRNA-1:five_prime_utr;Parent=Msa0562030-mRNA-1 |
| chr4_1 | CDS | 61700043 | 61700244 | 61700043 | ID=Msa0562030-mRNA-1:cds;Parent=Msa0562030-mRNA-1 |
| chr4_1 | CDS | 61698962 | 61699107 | 61698962 | ID=Msa0562030-mRNA-1:cds;Parent=Msa0562030-mRNA-1 |
| chr4_1 | three_prime_UTR | 61698941 | 61698961 | 61698941 | ID=Msa0562030-mRNA-1:three_prime_utr;Parent=Msa0562030-mRNA-1 |
| chr4_1 | three_prime_UTR | 61697558 | 61697868 | 61697558 | ID=Msa0562030-mRNA-1:three_prime_utr;Parent=Msa0562030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
