Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655510 | XP_039685386.1 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 3.24e-87 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655510 | sp|Q9ZQX4|VATF_ARATH | 86.508 | 126 | 17 | 0 | 1 | 126 | 1 | 126 | 2.89e-78 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0655510 | Msa0690880 | 0.834098 | 3.647398e-56 | -8.615850e-47 |
| Msa0655510 | Msa1191990 | 0.817370 | 3.416049e-52 | -8.615850e-47 |
| Msa0655510 | Msa1192000 | 0.826118 | 3.233046e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655510 | MtrunA17_Chr8g0375211 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 2.98e-91 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655510 | AT4G02620.1 | 86.508 | 126 | 17 | 0 | 1 | 126 | 1 | 126 | 2.94e-79 | 229 |
Find 52 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGATGGGCTAATTTA+TGG | 0.167977 | 4_3:+64192062 | Msa0655510:three_prime_UTR |
| ATCCTTTGATTGCAGCTTTC+AGG | 0.178093 | 4_3:+64191925 | Msa0655510:three_prime_UTR |
| TACCATAGTTGGGTTTCTTT+TGG | 0.252743 | 4_3:+64190356 | Msa0655510:CDS |
| TTGTCTTCAGCTATTCGATA+TGG | 0.341107 | 4_3:+64189054 | Msa0655510:intron |
| CTCATGATTCAGTTCTTTCA+CGG | 0.364488 | 4_3:+64191851 | Msa0655510:CDS |
| TCCTTTGATTGCAGCTTTCA+GGG | 0.364620 | 4_3:+64191926 | Msa0655510:three_prime_UTR |
| TTTCCACAGGATACCATAGT+TGG | 0.389583 | 4_3:+64190345 | Msa0655510:intron |
| GAAGGGATTTCAAGAATTGC+AGG | 0.394210 | 4_3:-64191805 | None:intergenic |
| ATTTCAAGAATTGCAGGAAC+TGG | 0.410123 | 4_3:-64191799 | None:intergenic |
| GAATCATGAGCAGGATCATA+AGG | 0.423283 | 4_3:-64191838 | None:intergenic |
| AGCCAAAAGAAACCCAACTA+TGG | 0.431491 | 4_3:-64190358 | None:intergenic |
| CTTGAATGATCTGTATTGTT+TGG | 0.433385 | 4_3:+64192013 | Msa0655510:three_prime_UTR |
| ACTTACTTGAATCCACAATA+AGG | 0.438291 | 4_3:-64190419 | None:intergenic |
| GGCAATAAGTGATGAGTTGT+TGG | 0.443842 | 4_3:-64189098 | None:intergenic |
| CGGCGGAGCGTGACGGAGAC+GGG | 0.452843 | 4_3:-64188621 | None:intergenic |
| TCCATCTCAACTGTCGCATC+CGG | 0.453257 | 4_3:+64188646 | Msa0655510:five_prime_UTR |
| TGCAGGTTGCAAATATGATA+AGG | 0.462958 | 4_3:+64191752 | Msa0655510:intron |
| TGACGGAGACGGGAGGAATC+CGG | 0.464286 | 4_3:-64188611 | None:intergenic |
| GGGCTAATTTATGGTTACCT+TGG | 0.465335 | 4_3:+64192071 | Msa0655510:three_prime_UTR |
| GATGAGTTGTTGGCAGGAAT+CGG | 0.469003 | 4_3:-64189088 | None:intergenic |
| GAAGACAAATTACCTTATTG+TGG | 0.485357 | 4_3:+64190407 | Msa0655510:CDS |
| TTCCACAGGATACCATAGTT+GGG | 0.495606 | 4_3:+64190346 | Msa0655510:intron |
| TTCAATGCTGAATCAGTGGC+AGG | 0.511114 | 4_3:+64191886 | Msa0655510:CDS |
| TCATGATTCAGTTCTTTCAC+GGG | 0.514197 | 4_3:+64191852 | Msa0655510:CDS |
| CCATCTTGAAGATCTATGAC+AGG | 0.531131 | 4_3:-64192050 | None:intergenic |
| AATTGATAATATTTCATCCA+AGG | 0.534028 | 4_3:-64192088 | None:intergenic |
| ACGGCGGAGCGTGACGGAGA+CGG | 0.535709 | 4_3:-64188622 | None:intergenic |
| CATGCAATCTTCAAATCAGA+TGG | 0.539964 | 4_3:-64192153 | None:intergenic |
| GGCAGGAATCGGAACTCTGT+TGG | 0.544048 | 4_3:-64189077 | None:intergenic |
| GCTTACCTCGTCAGCAATCA+CGG | 0.558344 | 4_3:-64189119 | None:intergenic |
| ATAAGTGATGAGTTGTTGGC+AGG | 0.559969 | 4_3:-64189094 | None:intergenic |
| AATCATGAGCAGGATCATAA+GGG | 0.560484 | 4_3:-64191837 | None:intergenic |
| ACCCTGAAAGCTGCAATCAA+AGG | 0.565789 | 4_3:-64191927 | None:intergenic |
| GAAAGAACTGAATCATGAGC+AGG | 0.572900 | 4_3:-64191847 | None:intergenic |
| ACTAGCTTTGAGAGTGCGTG+TGG | 0.574357 | 4_3:+64188565 | Msa0655510:five_prime_UTR |
| TATTGCCGTGATTGCTGACG+AGG | 0.574752 | 4_3:+64189114 | Msa0655510:CDS |
| CTGTCATAGATCTTCAAGAT+GGG | 0.578380 | 4_3:+64192051 | Msa0655510:three_prime_UTR |
| TAGCAGCTCTCGAAACAGAC+CGG | 0.582567 | 4_3:+64188592 | Msa0655510:five_prime_UTR |
| ATGGAGACGGCGGAGCGTGA+CGG | 0.587931 | 4_3:-64188628 | None:intergenic |
| CCTGTCATAGATCTTCAAGA+TGG | 0.596437 | 4_3:+64192050 | Msa0655510:three_prime_UTR |
| ACCGGATGCGACAGTTGAGA+TGG | 0.610946 | 4_3:-64188647 | None:intergenic |
| TCTCTTCAATGCTGAATCAG+TGG | 0.629677 | 4_3:+64191882 | Msa0655510:CDS |
| AACGACTGTCAAACAAATCG+AGG | 0.646091 | 4_3:+64191050 | Msa0655510:CDS |
| CAAAGAATTCTCAACACGGG+AGG | 0.652854 | 4_3:+64191080 | Msa0655510:CDS |
| CGGAGCGTGACGGAGACGGG+AGG | 0.660477 | 4_3:-64188618 | None:intergenic |
| CTAGCTTTGAGAGTGCGTGT+GGG | 0.662661 | 4_3:+64188566 | Msa0655510:five_prime_UTR |
| TGCGACAGTTGAGATGGAGA+CGG | 0.663371 | 4_3:-64188641 | None:intergenic |
| ATTCAAAGAATTCTCAACAC+GGG | 0.675761 | 4_3:+64191077 | Msa0655510:CDS |
| CATTCAAAGAATTCTCAACA+CGG | 0.678390 | 4_3:+64191076 | Msa0655510:CDS |
| CATGAGCAGGATCATAAGGG+TGG | 0.700765 | 4_3:-64191834 | None:intergenic |
| GACAGTTGAGATGGAGACGG+CGG | 0.701655 | 4_3:-64188638 | None:intergenic |
| TGGGAAACGTTGACATACGT+CGG | 0.705364 | 4_3:+64190385 | Msa0655510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTAAAAAATTTACAAGT+TGG | - | chr4_3:64188701-64188720 | None:intergenic | 15.0% |
| !! | TTAATAAAAAAAGAAATCAG+TGG | - | chr4_3:64189562-64189581 | None:intergenic | 15.0% |
| !! | ACTAGTTATTCAAATTAATA+GGG | - | chr4_3:64190175-64190194 | None:intergenic | 15.0% |
| !! | TTTACTTACTATTATTTATG+AGG | + | chr4_3:64190455-64190474 | Msa0655510:intron | 15.0% |
| !! | TTACTTACTATTATTTATGA+GGG | + | chr4_3:64190456-64190475 | Msa0655510:intron | 15.0% |
| !! | TTAAAAGGAAAAAATTGTAT+GGG | - | chr4_3:64190497-64190516 | None:intergenic | 15.0% |
| !! | ATTAAAAGGAAAAAATTGTA+TGG | - | chr4_3:64190498-64190517 | None:intergenic | 15.0% |
| !! | TATGAAATGTATTAAAGATA+AGG | - | chr4_3:64190718-64190737 | None:intergenic | 15.0% |
| !!! | AATTGATTCATAGTAATCAA+GGG | + | chr4_3:64188993-64189012 | Msa0655510:intron | 20.0% |
| !!! | TAAGAAAGTATATACAACAT+GGG | - | chr4_3:64189150-64189169 | None:intergenic | 20.0% |
| !!! | ATAAGAAAGTATATACAACA+TGG | - | chr4_3:64189151-64189170 | None:intergenic | 20.0% |
| !!! | TTAAAGATCTATTTTGCTAT+TGG | + | chr4_3:64189299-64189318 | Msa0655510:intron | 20.0% |
| !!! | TTTTTGCTAGAATCTATTTA+AGG | - | chr4_3:64189594-64189613 | None:intergenic | 20.0% |
| !! | TAACAGGATTTAAATGAAAT+AGG | + | chr4_3:64189615-64189634 | Msa0655510:intron | 20.0% |
| !!! | AAATTTAATTTCTTTGGATG+AGG | - | chr4_3:64189656-64189675 | None:intergenic | 20.0% |
| !!! | AGAGACAAATTTAATTTCTT+TGG | - | chr4_3:64189662-64189681 | None:intergenic | 20.0% |
| !! | AAATACCAGCTTATATAATA+TGG | - | chr4_3:64189790-64189809 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTCCTTATTTCA+GGG | - | chr4_3:64189942-64189961 | None:intergenic | 20.0% |
| !! | CTAGTTATTCAAATTAATAG+GGG | - | chr4_3:64190174-64190193 | None:intergenic | 20.0% |
| !! | CACTAGTTATTCAAATTAAT+AGG | - | chr4_3:64190176-64190195 | None:intergenic | 20.0% |
| !! | CAAAAAAGAAAAATCCAAAA+TGG | - | chr4_3:64190263-64190282 | None:intergenic | 20.0% |
| !!! | GGATTTTTCTTTTTTGTAAT+TGG | + | chr4_3:64190267-64190286 | Msa0655510:intron | 20.0% |
| !!! | AATTCAATTTTATTTTCCAC+AGG | + | chr4_3:64190332-64190351 | Msa0655510:intron | 20.0% |
| !! | TAAAAGGAAAAAATTGTATG+GGG | - | chr4_3:64190496-64190515 | None:intergenic | 20.0% |
| !!! | AACACATGTACTATTTTTAT+TGG | - | chr4_3:64190586-64190605 | None:intergenic | 20.0% |
| !!! | TTCAAAACAAATTGATTTGA+CGG | + | chr4_3:64190990-64191009 | Msa0655510:intron | 20.0% |
| !! | ATGAAATATGACTTACAAAT+TGG | - | chr4_3:64191128-64191147 | None:intergenic | 20.0% |
| !! | AATTTGTAAGTCATATTTCA+TGG | + | chr4_3:64191127-64191146 | Msa0655510:intron | 20.0% |
| !!! | AAAATGTTGACTAGTTTATA+TGG | + | chr4_3:64191536-64191555 | Msa0655510:intron | 20.0% |
| !!! | TTGTTTTTCTTTGTACATTA+TGG | + | chr4_3:64191955-64191974 | Msa0655510:three_prime_UTR | 20.0% |
| !!! | AATTGATAATATTTCATCCA+AGG | - | chr4_3:64192091-64192110 | None:intergenic | 20.0% |
| ! | AATGAATTACGTGTTGAAAA+TGG | - | chr4_3:64188772-64188791 | None:intergenic | 25.0% |
| ! | CCAAATCGAGAAAAAAAAAA+AGG | - | chr4_3:64188875-64188894 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTTTCTCGATT+TGG | + | chr4_3:64188872-64188891 | Msa0655510:intron | 25.0% |
| !! | GAATTGATTCATAGTAATCA+AGG | + | chr4_3:64188992-64189011 | Msa0655510:intron | 25.0% |
| ! | AATCAGATGATATGATAACT+AGG | + | chr4_3:64189199-64189218 | Msa0655510:intron | 25.0% |
| !! | ACTATTATTGTACATTTTCC+TGG | + | chr4_3:64189366-64189385 | Msa0655510:intron | 25.0% |
| ! | AGATTCTAGCAAAAATTAAC+AGG | + | chr4_3:64189599-64189618 | Msa0655510:intron | 25.0% |
| ! | AAATGAAATAGGAAATTGTG+AGG | + | chr4_3:64189626-64189645 | Msa0655510:intron | 25.0% |
| ! | TCTCTGATAAAATTGAAGAA+AGG | + | chr4_3:64189679-64189698 | Msa0655510:intron | 25.0% |
| ! | CTCTGATAAAATTGAAGAAA+GGG | + | chr4_3:64189680-64189699 | Msa0655510:intron | 25.0% |
| ! | TACTTCCATATTATATAAGC+TGG | + | chr4_3:64189782-64189801 | Msa0655510:intron | 25.0% |
| ! | ATACTCCTATTTCATTAACA+AGG | - | chr4_3:64189831-64189850 | None:intergenic | 25.0% |
| !! | TAGATTTGACTTAGAGTAAT+TGG | - | chr4_3:64189896-64189915 | None:intergenic | 25.0% |
| ! | TAGCCAATTACTAGTATAAA+CGG | + | chr4_3:64189914-64189933 | Msa0655510:intron | 25.0% |
| !!! | GTGTTTTATTTCCTTATTTC+AGG | - | chr4_3:64189943-64189962 | None:intergenic | 25.0% |
| ! | AAAATCAGATATAGTTCAGT+CGG | + | chr4_3:64190128-64190147 | Msa0655510:intron | 25.0% |
| ! | GAAAAATCCAAAATGGAATT+GGG | - | chr4_3:64190256-64190275 | None:intergenic | 25.0% |
| ! | AGAAAAATCCAAAATGGAAT+TGG | - | chr4_3:64190257-64190276 | None:intergenic | 25.0% |
| ! | AAAAGGAAAAAATTGTATGG+GGG | - | chr4_3:64190495-64190514 | None:intergenic | 25.0% |
| ! | AATCAGAAAATTAGGTGAAA+AGG | - | chr4_3:64190552-64190571 | None:intergenic | 25.0% |
| ! | TGTATTAAAGATAAGGTTTG+TGG | - | chr4_3:64190711-64190730 | None:intergenic | 25.0% |
| !! | AAACCGTAGAATACTTATTT+TGG | + | chr4_3:64190757-64190776 | Msa0655510:intron | 25.0% |
| !!! | AACCGTAGAATACTTATTTT+GGG | + | chr4_3:64190758-64190777 | Msa0655510:intron | 25.0% |
| ! | TTTATGCAAAGGTTATTAGT+AGG | + | chr4_3:64190794-64190813 | Msa0655510:intron | 25.0% |
| ! | AGGATAAGTAAAAAGTCTTT+CGG | - | chr4_3:64191263-64191282 | None:intergenic | 25.0% |
| ! | AACATGTGTTAAACTATGAT+AGG | - | chr4_3:64191288-64191307 | None:intergenic | 25.0% |
| !!! | TTTTAATTATCTACTGCATC+AGG | + | chr4_3:64191354-64191373 | Msa0655510:intron | 25.0% |
| ! | AATGAATAATGCTAGATAAC+TGG | + | chr4_3:64191398-64191417 | Msa0655510:intron | 25.0% |
| !! | ATTTTATGATTGAATCTCAC+TGG | - | chr4_3:64191455-64191474 | None:intergenic | 25.0% |
| ! | GTGAGATTCAATCATAAAAT+TGG | + | chr4_3:64191455-64191474 | Msa0655510:intron | 25.0% |
| ! | TCAGTTATTAGTTGGATATT+TGG | + | chr4_3:64191581-64191600 | Msa0655510:intron | 25.0% |
| !! | TGAAATAGTTTTTAAATCCC+AGG | - | chr4_3:64191646-64191665 | None:intergenic | 25.0% |
| ! | TAAATAACCCAAGATTGTAA+AGG | - | chr4_3:64191710-64191729 | None:intergenic | 25.0% |
| !! | TGCAAATATGATAAGGTTTT+TGG | + | chr4_3:64191759-64191778 | Msa0655510:CDS | 25.0% |
| ATTGAAAACAGAATGCGAAT+TGG | - | chr4_3:64188828-64188847 | None:intergenic | 30.0% | |
| CAACTTGAAAGCTTAACAAT+AGG | - | chr4_3:64188967-64188986 | None:intergenic | 30.0% | |
| ! | TATTAGCTACGATGATTTTG+CGG | - | chr4_3:64189248-64189267 | None:intergenic | 30.0% |
| TCTTGAAAGGATCAAATTCA+GGG | + | chr4_3:64189436-64189455 | Msa0655510:intron | 30.0% | |
| TTCAGGGTTTAGAAAATAAG+TGG | + | chr4_3:64189452-64189471 | Msa0655510:intron | 30.0% | |
| TGACTTCTTAAGTCATCTTA+TGG | - | chr4_3:64189509-64189528 | None:intergenic | 30.0% | |
| AAAAAGAAATCAGTGGCTTT+AGG | - | chr4_3:64189555-64189574 | None:intergenic | 30.0% | |
| ! | GATTGCCTTGTTAATGAAAT+AGG | + | chr4_3:64189823-64189842 | Msa0655510:intron | 30.0% |
| GTTCCGTTTATACTAGTAAT+TGG | - | chr4_3:64189920-64189939 | None:intergenic | 30.0% | |
| !!! | ATTGTATGGATTTTGGCTTT+GGG | - | chr4_3:64189973-64189992 | None:intergenic | 30.0% |
| ! | AACTGTCATTGTATGGATTT+TGG | - | chr4_3:64189980-64189999 | None:intergenic | 30.0% |
| AAAATCCATACAATGACAGT+TGG | + | chr4_3:64189979-64189998 | Msa0655510:intron | 30.0% | |
| ATGGAATTGGGAAATGATAT+GGG | - | chr4_3:64190244-64190263 | None:intergenic | 30.0% | |
| AATGGAATTGGGAAATGATA+TGG | - | chr4_3:64190245-64190264 | None:intergenic | 30.0% | |
| ! | ATCATTTCCCAATTCCATTT+TGG | + | chr4_3:64190246-64190265 | Msa0655510:intron | 30.0% |
| GAAGACAAATTACCTTATTG+TGG | + | chr4_3:64190407-64190426 | Msa0655510:CDS | 30.0% | |
| ACTTACTTGAATCCACAATA+AGG | - | chr4_3:64190422-64190441 | None:intergenic | 30.0% | |
| AACATGATGCACAGATTAAA+AGG | - | chr4_3:64190512-64190531 | None:intergenic | 30.0% | |
| ! | TTCACCTAATTTTCTGATTG+TGG | + | chr4_3:64190553-64190572 | Msa0655510:intron | 30.0% |
| TCTACCACAATCAGAAAATT+AGG | - | chr4_3:64190560-64190579 | None:intergenic | 30.0% | |
| AGACTTATTGTTGTATATCG+TGG | + | chr4_3:64190622-64190641 | Msa0655510:intron | 30.0% | |
| CATTTCTACACATCCTATAT+AGG | - | chr4_3:64190679-64190698 | None:intergenic | 30.0% | |
| ! | AAGTATTCTACGGTTTTTCT+GGG | - | chr4_3:64190753-64190772 | None:intergenic | 30.0% |
| ! | TAAGTATTCTACGGTTTTTC+TGG | - | chr4_3:64190754-64190773 | None:intergenic | 30.0% |
| TGCCCAAAATAAGTATTCTA+CGG | - | chr4_3:64190763-64190782 | None:intergenic | 30.0% | |
| !!! | TAGAATACTTATTTTGGGCA+TGG | + | chr4_3:64190763-64190782 | Msa0655510:intron | 30.0% |
| !!! | AGAATACTTATTTTGGGCAT+GGG | + | chr4_3:64190764-64190783 | Msa0655510:intron | 30.0% |
| !!! | TGGGCTATTTTTTTATGCAA+AGG | + | chr4_3:64190783-64190802 | Msa0655510:intron | 30.0% |
| TTAATTGGTACTTGAACCTT+GGG | + | chr4_3:64190833-64190852 | Msa0655510:intron | 30.0% | |
| !! | TCAAGTTCTGAAAATATTCC+TGG | + | chr4_3:64190951-64190970 | Msa0655510:intron | 30.0% |
| CATTCAAAGAATTCTCAACA+CGG | + | chr4_3:64191076-64191095 | Msa0655510:CDS | 30.0% | |
| ATTCAAAGAATTCTCAACAC+GGG | + | chr4_3:64191077-64191096 | Msa0655510:CDS | 30.0% | |
| !! | AACAGCCTGAATCATTTTTA+TGG | - | chr4_3:64191153-64191172 | None:intergenic | 30.0% |
| GTGTTAAACTATGATAGGTA+AGG | - | chr4_3:64191283-64191302 | None:intergenic | 30.0% | |
| AGTTTAACACATGTTCTGTT+TGG | + | chr4_3:64191293-64191312 | Msa0655510:intron | 30.0% | |
| TGGTAATCAACACTATTGTT+AGG | + | chr4_3:64191313-64191332 | Msa0655510:intron | 30.0% | |
| GGTAATCAACACTATTGTTA+GGG | + | chr4_3:64191314-64191333 | Msa0655510:intron | 30.0% | |
| ! | CATTAACCTCATGTAAGTTT+TGG | - | chr4_3:64191382-64191401 | None:intergenic | 30.0% |
| !! | TGACTAGTTTATATGGTCAT+TGG | + | chr4_3:64191543-64191562 | Msa0655510:intron | 30.0% |
| ! | ATAGTTTTTAAATCCCAGGT+AGG | - | chr4_3:64191642-64191661 | None:intergenic | 30.0% |
| TAAAAACTATTTCATGCACC+CGG | + | chr4_3:64191652-64191671 | Msa0655510:intron | 30.0% | |
| ! | AAGGTTTTCTAAATAGGAAC+CGG | - | chr4_3:64191674-64191693 | None:intergenic | 30.0% |
| ! | AGCAAGAAGGTTTTCTAAAT+AGG | - | chr4_3:64191680-64191699 | None:intergenic | 30.0% |
| AGAAAACCTTCTTGCTTATT+TGG | + | chr4_3:64191684-64191703 | Msa0655510:intron | 30.0% | |
| ! | TTATTTGGCCTTTACAATCT+TGG | + | chr4_3:64191699-64191718 | Msa0655510:intron | 30.0% |
| ! | TATTTGGCCTTTACAATCTT+GGG | + | chr4_3:64191700-64191719 | Msa0655510:intron | 30.0% |
| TATAATTTCTTTGACTGTGC+AGG | + | chr4_3:64191735-64191754 | Msa0655510:intron | 30.0% | |
| CTTGAATGATCTGTATTGTT+TGG | + | chr4_3:64192013-64192032 | Msa0655510:three_prime_UTR | 30.0% | |
| ! | ATTTACAAGTTGGAGAGCAA+AGG | - | chr4_3:64188691-64188710 | None:intergenic | 35.0% |
| GCGAATTGGAACAATTTGAT+CGG | - | chr4_3:64188814-64188833 | None:intergenic | 35.0% | |
| TTGTCTTCAGCTATTCGATA+TGG | + | chr4_3:64189054-64189073 | Msa0655510:intron | 35.0% | |
| ACTAGGATGCATGTTTGAAT+AGG | + | chr4_3:64189216-64189235 | Msa0655510:intron | 35.0% | |
| CTAGGATGCATGTTTGAATA+GGG | + | chr4_3:64189217-64189236 | Msa0655510:intron | 35.0% | |
| !! | TTTTCTTAAGAAGTGTGCAG+TGG | - | chr4_3:64189343-64189362 | None:intergenic | 35.0% |
| ! | TATTGTACATTTTCCTGGTG+TGG | + | chr4_3:64189371-64189390 | Msa0655510:intron | 35.0% |
| GGGTTTAATAGGTTAGGTTT+AGG | + | chr4_3:64189410-64189429 | Msa0655510:intron | 35.0% | |
| ! | TAGGTTTAGGTTCTCTTGAA+AGG | + | chr4_3:64189423-64189442 | Msa0655510:intron | 35.0% |
| CTCTTGAAAGGATCAAATTC+AGG | + | chr4_3:64189435-64189454 | Msa0655510:intron | 35.0% | |
| GGGTTTAGAAAATAAGTGGA+TGG | + | chr4_3:64189456-64189475 | Msa0655510:intron | 35.0% | |
| GAAAGGGATTTAGAGATCAT+AGG | + | chr4_3:64189696-64189715 | Msa0655510:intron | 35.0% | |
| ATAAACGGAACCCTGAAATA+AGG | + | chr4_3:64189929-64189948 | Msa0655510:intron | 35.0% | |
| !!! | TTGTATGGATTTTGGCTTTG+GGG | - | chr4_3:64189972-64189991 | None:intergenic | 35.0% |
| !!! | CATTGTATGGATTTTGGCTT+TGG | - | chr4_3:64189974-64189993 | None:intergenic | 35.0% |
| ! | ACTTTCAGTTTTCAGCCATA+GGG | - | chr4_3:64190072-64190091 | None:intergenic | 35.0% |
| ! | TACTTTCAGTTTTCAGCCAT+AGG | - | chr4_3:64190073-64190092 | None:intergenic | 35.0% |
| ! | TACCATAGTTGGGTTTCTTT+TGG | + | chr4_3:64190356-64190375 | Msa0655510:CDS | 35.0% |
| GAAAATTAGGTGAAAAGGCA+GGG | - | chr4_3:64190547-64190566 | None:intergenic | 35.0% | |
| AGAAAATTAGGTGAAAAGGC+AGG | - | chr4_3:64190548-64190567 | None:intergenic | 35.0% | |
| ! | AGTATTCTACGGTTTTTCTG+GGG | - | chr4_3:64190752-64190771 | None:intergenic | 35.0% |
| ACCAATTAACCTCAGTTTCA+GGG | - | chr4_3:64190822-64190841 | None:intergenic | 35.0% | |
| TACCAATTAACCTCAGTTTC+AGG | - | chr4_3:64190823-64190842 | None:intergenic | 35.0% | |
| GTTAATTGGTACTTGAACCT+TGG | + | chr4_3:64190832-64190851 | Msa0655510:intron | 35.0% | |
| AAACTGAGCAAGAAATTACC+AGG | - | chr4_3:64190972-64190991 | None:intergenic | 35.0% | |
| CATGGCCATAAAAATGATTC+AGG | + | chr4_3:64191145-64191164 | Msa0655510:intron | 35.0% | |
| ATGTAATAAGCTGATGTCTC+AGG | - | chr4_3:64191240-64191259 | None:intergenic | 35.0% | |
| CACTATTGTTAGGGAAAATC+TGG | + | chr4_3:64191323-64191342 | Msa0655510:intron | 35.0% | |
| TATTGTTAGGGAAAATCTGG+AGG | + | chr4_3:64191326-64191345 | Msa0655510:intron | 35.0% | |
| ATTGTTAGGGAAAATCTGGA+GGG | + | chr4_3:64191327-64191346 | Msa0655510:intron | 35.0% | |
| TTGTCGACATTTAAACCCAA+AGG | - | chr4_3:64191500-64191519 | None:intergenic | 35.0% | |
| CTGTTGGATCAGTTATTAGT+TGG | + | chr4_3:64191573-64191592 | Msa0655510:intron | 35.0% | |
| ! | AGGTTTTCTAAATAGGAACC+GGG | - | chr4_3:64191673-64191692 | None:intergenic | 35.0% |
| TAAAGGCCAAATAAGCAAGA+AGG | - | chr4_3:64191693-64191712 | None:intergenic | 35.0% | |
| TGCAGGTTGCAAATATGATA+AGG | + | chr4_3:64191752-64191771 | Msa0655510:intron | 35.0% | |
| ATTTCAAGAATTGCAGGAAC+TGG | - | chr4_3:64191802-64191821 | None:intergenic | 35.0% | |
| AATCATGAGCAGGATCATAA+GGG | - | chr4_3:64191840-64191859 | None:intergenic | 35.0% | |
| CTCATGATTCAGTTCTTTCA+CGG | + | chr4_3:64191851-64191870 | Msa0655510:CDS | 35.0% | |
| TCATGATTCAGTTCTTTCAC+GGG | + | chr4_3:64191852-64191871 | Msa0655510:CDS | 35.0% | |
| CTGTCATAGATCTTCAAGAT+GGG | + | chr4_3:64192051-64192070 | Msa0655510:three_prime_UTR | 35.0% | |
| !! | CTTCAAGATGGGCTAATTTA+TGG | + | chr4_3:64192062-64192081 | Msa0655510:three_prime_UTR | 35.0% |
| AAAGGATGAATAGAACGCAC+CGG | - | chr4_3:64188668-64188687 | None:intergenic | 40.0% | |
| ! | AGTTCTTTTGATGCTCACAC+TGG | + | chr4_3:64188721-64188740 | Msa0655510:intron | 40.0% |
| ATAAGTGATGAGTTGTTGGC+AGG | - | chr4_3:64189097-64189116 | None:intergenic | 40.0% | |
| GGCAATAAGTGATGAGTTGT+TGG | - | chr4_3:64189101-64189120 | None:intergenic | 40.0% | |
| TAGAAGGCTTGGGGTTTAAT+AGG | + | chr4_3:64189399-64189418 | Msa0655510:intron | 40.0% | |
| ATGGATAGATTCTCGAGGAA+GGG | + | chr4_3:64189475-64189494 | Msa0655510:intron | 40.0% | |
| GATTGCATCACACATAGTCA+AGG | + | chr4_3:64189749-64189768 | Msa0655510:intron | 40.0% | |
| ACTGCTTGGTACAAATCACA+GGG | - | chr4_3:64189859-64189878 | None:intergenic | 40.0% | |
| AGTAATTGGACCTGCAGTTT+CGG | - | chr4_3:64189882-64189901 | None:intergenic | 40.0% | |
| !!! | TGTATGGATTTTGGCTTTGG+GGG | - | chr4_3:64189971-64189990 | None:intergenic | 40.0% |
| ACACTCCAACTGTCATTGTA+TGG | - | chr4_3:64189987-64190006 | None:intergenic | 40.0% | |
| TACAATGACAGTTGGAGTGT+TGG | + | chr4_3:64189987-64190006 | Msa0655510:intron | 40.0% | |
| ACCGCACTAAAATATCCCTA+TGG | + | chr4_3:64190054-64190073 | Msa0655510:intron | 40.0% | |
| !!! | GCCATAGGGATATTTTAGTG+CGG | - | chr4_3:64190058-64190077 | None:intergenic | 40.0% |
| CGGCAATTGAACATTACAAC+TGG | + | chr4_3:64190148-64190167 | Msa0655510:intron | 40.0% | |
| TTTCCACAGGATACCATAGT+TGG | + | chr4_3:64190345-64190364 | Msa0655510:intron | 40.0% | |
| TTCCACAGGATACCATAGTT+GGG | + | chr4_3:64190346-64190365 | Msa0655510:intron | 40.0% | |
| AGCCAAAAGAAACCCAACTA+TGG | - | chr4_3:64190361-64190380 | None:intergenic | 40.0% | |
| ! | ATAGTTGGGTTTCTTTTGGC+TGG | + | chr4_3:64190360-64190379 | Msa0655510:CDS | 40.0% |
| ATCTGTGCATCATGTTCATG+TGG | + | chr4_3:64190516-64190535 | Msa0655510:intron | 40.0% | |
| TGGACCTCGTAAATAAGCAT+GGG | + | chr4_3:64190642-64190661 | Msa0655510:intron | 40.0% | |
| TATCCCCATGCTTATTTACG+AGG | - | chr4_3:64190649-64190668 | None:intergenic | 40.0% | |
| GGGATATGTCTCTCCTATAT+AGG | + | chr4_3:64190663-64190682 | Msa0655510:intron | 40.0% | |
| ACCCTGAAACTGAGGTTAAT+TGG | + | chr4_3:64190818-64190837 | Msa0655510:intron | 40.0% | |
| AGTAATCCAAGTACTACCCA+AGG | - | chr4_3:64190852-64190871 | None:intergenic | 40.0% | |
| AACGACTGTCAAACAAATCG+AGG | + | chr4_3:64191050-64191069 | Msa0655510:CDS | 40.0% | |
| TAGGAAGTAGGAACTAACAG+TGG | - | chr4_3:64191214-64191233 | None:intergenic | 40.0% | |
| CTGTTAGTTCCTACTTCCTA+CGG | + | chr4_3:64191214-64191233 | Msa0655510:intron | 40.0% | |
| CAGGTTCCAAAACTTACATG+AGG | + | chr4_3:64191373-64191392 | Msa0655510:intron | 40.0% | |
| TTCTTTCGATAGCCATCCTT+TGG | + | chr4_3:64191481-64191500 | Msa0655510:intron | 40.0% | |
| TCTTTCGATAGCCATCCTTT+GGG | + | chr4_3:64191482-64191501 | Msa0655510:intron | 40.0% | |
| CGACATTTAAACCCAAAGGA+TGG | - | chr4_3:64191496-64191515 | None:intergenic | 40.0% | |
| CAATGGCTGATTGAGCTAAA+AGG | - | chr4_3:64191613-64191632 | None:intergenic | 40.0% | |
| GAAGGGATTTCAAGAATTGC+AGG | - | chr4_3:64191808-64191827 | None:intergenic | 40.0% | |
| ! | CATAAGGGTGGTCTTTTGAA+GGG | - | chr4_3:64191825-64191844 | None:intergenic | 40.0% |
| ! | TCATAAGGGTGGTCTTTTGA+AGG | - | chr4_3:64191826-64191845 | None:intergenic | 40.0% |
| GAATCATGAGCAGGATCATA+AGG | - | chr4_3:64191841-64191860 | None:intergenic | 40.0% | |
| GAAAGAACTGAATCATGAGC+AGG | - | chr4_3:64191850-64191869 | None:intergenic | 40.0% | |
| TCTCTTCAATGCTGAATCAG+TGG | + | chr4_3:64191882-64191901 | Msa0655510:CDS | 40.0% | |
| ATCCTTTGATTGCAGCTTTC+AGG | + | chr4_3:64191925-64191944 | Msa0655510:three_prime_UTR | 40.0% | |
| TCCTTTGATTGCAGCTTTCA+GGG | + | chr4_3:64191926-64191945 | Msa0655510:three_prime_UTR | 40.0% | |
| CCATCTTGAAGATCTATGAC+AGG | - | chr4_3:64192053-64192072 | None:intergenic | 40.0% | |
| CCTGTCATAGATCTTCAAGA+TGG | + | chr4_3:64192050-64192069 | Msa0655510:three_prime_UTR | 40.0% | |
| GGGCTAATTTATGGTTACCT+TGG | + | chr4_3:64192071-64192090 | Msa0655510:three_prime_UTR | 40.0% | |
| ! | CAAGTTGGAGAGCAAAGGAA+AGG | - | chr4_3:64188686-64188705 | None:intergenic | 45.0% |
| GATGAGTTGTTGGCAGGAAT+CGG | - | chr4_3:64189091-64189110 | None:intergenic | 45.0% | |
| ! | TGTGGAGTACTAGAAGGCTT+GGG | + | chr4_3:64189389-64189408 | Msa0655510:intron | 45.0% |
| GGCTTGGGGTTTAATAGGTT+AGG | + | chr4_3:64189404-64189423 | Msa0655510:intron | 45.0% | |
| AGTGGATGGATAGATTCTCG+AGG | + | chr4_3:64189470-64189489 | Msa0655510:intron | 45.0% | |
| GATGGATAGATTCTCGAGGA+AGG | + | chr4_3:64189474-64189493 | Msa0655510:intron | 45.0% | |
| TGCATCACACATAGTCAAGG+AGG | + | chr4_3:64189752-64189771 | Msa0655510:intron | 45.0% | |
| GACTGCTTGGTACAAATCAC+AGG | - | chr4_3:64189860-64189879 | None:intergenic | 45.0% | |
| !!! | TATTTTAGTGCGGTGCTGCT+AGG | - | chr4_3:64190048-64190067 | None:intergenic | 45.0% |
| AACCCAACTATGGTATCCTG+TGG | - | chr4_3:64190351-64190370 | None:intergenic | 45.0% | |
| TGGGAAACGTTGACATACGT+CGG | + | chr4_3:64190385-64190404 | Msa0655510:CDS | 45.0% | |
| GTGGACCTCGTAAATAAGCA+TGG | + | chr4_3:64190641-64190660 | Msa0655510:intron | 45.0% | |
| GGACCTCGTAAATAAGCATG+GGG | + | chr4_3:64190643-64190662 | Msa0655510:intron | 45.0% | |
| TAGTAGGTACCCTGAAACTG+AGG | + | chr4_3:64190810-64190829 | Msa0655510:intron | 45.0% | |
| CTTGAACCTTGGGTAGTACT+TGG | + | chr4_3:64190843-64190862 | Msa0655510:intron | 45.0% | |
| CAAAGAATTCTCAACACGGG+AGG | + | chr4_3:64191080-64191099 | Msa0655510:CDS | 45.0% | |
| AAGTAGGAACTAACAGTGGC+AGG | - | chr4_3:64191210-64191229 | None:intergenic | 45.0% | |
| TCTCACTGGTACTGTCACAT+TGG | - | chr4_3:64191441-64191460 | None:intergenic | 45.0% | |
| !! | GGTCATTGGTTTCTCACTGT+TGG | + | chr4_3:64191557-64191576 | Msa0655510:intron | 45.0% |
| GGCTGATTGAGCTAAAAGGA+CGG | - | chr4_3:64191609-64191628 | None:intergenic | 45.0% | |
| AGCCATTGTGATATCCTACC+TGG | + | chr4_3:64191625-64191644 | Msa0655510:intron | 45.0% | |
| GCCATTGTGATATCCTACCT+GGG | + | chr4_3:64191626-64191645 | Msa0655510:intron | 45.0% | |
| TCCCAGGTAGGATATCACAA+TGG | - | chr4_3:64191630-64191649 | None:intergenic | 45.0% | |
| TTCAATGCTGAATCAGTGGC+AGG | + | chr4_3:64191886-64191905 | Msa0655510:CDS | 45.0% | |
| ACCCTGAAAGCTGCAATCAA+AGG | - | chr4_3:64191930-64191949 | None:intergenic | 45.0% | |
| !! | ACTAGCTTTGAGAGTGCGTG+TGG | + | chr4_3:64188565-64188584 | Msa0655510:five_prime_UTR | 50.0% |
| !! | CTAGCTTTGAGAGTGCGTGT+GGG | + | chr4_3:64188566-64188585 | Msa0655510:five_prime_UTR | 50.0% |
| TAGCAGCTCTCGAAACAGAC+CGG | + | chr4_3:64188592-64188611 | Msa0655510:five_prime_UTR | 50.0% | |
| TGCGACAGTTGAGATGGAGA+CGG | - | chr4_3:64188644-64188663 | None:intergenic | 50.0% | |
| TCCATCTCAACTGTCGCATC+CGG | + | chr4_3:64188646-64188665 | Msa0655510:five_prime_UTR | 50.0% | |
| TATTGCCGTGATTGCTGACG+AGG | + | chr4_3:64189114-64189133 | Msa0655510:CDS | 50.0% | |
| GCTTACCTCGTCAGCAATCA+CGG | - | chr4_3:64189122-64189141 | None:intergenic | 50.0% | |
| ! | TCCTGGTGTGGAGTACTAGA+AGG | + | chr4_3:64189383-64189402 | Msa0655510:intron | 50.0% |
| ! | GTGTGGAGTACTAGAAGGCT+TGG | + | chr4_3:64189388-64189407 | Msa0655510:intron | 50.0% |
| ! | GTGGAGTACTAGAAGGCTTG+GGG | + | chr4_3:64189390-64189409 | Msa0655510:intron | 50.0% |
| !! | TGGGTTTCTTTTGGCTGGAG+TGG | + | chr4_3:64190365-64190384 | Msa0655510:CDS | 50.0% |
| !! | GGGTTTCTTTTGGCTGGAGT+GGG | + | chr4_3:64190366-64190385 | Msa0655510:CDS | 50.0% |
| CATGAGCAGGATCATAAGGG+TGG | - | chr4_3:64191837-64191856 | None:intergenic | 50.0% | |
| GACAGTTGAGATGGAGACGG+CGG | - | chr4_3:64188641-64188660 | None:intergenic | 55.0% | |
| ACCGGATGCGACAGTTGAGA+TGG | - | chr4_3:64188650-64188669 | None:intergenic | 55.0% | |
| GGCAGGAATCGGAACTCTGT+TGG | - | chr4_3:64189080-64189099 | None:intergenic | 55.0% | |
| GCCTTCTAGTACTCCACACC+AGG | - | chr4_3:64189387-64189406 | None:intergenic | 55.0% | |
| ACCAAGCAGTCCGAAACTGC+AGG | + | chr4_3:64189869-64189888 | Msa0655510:intron | 55.0% | |
| ACCTGCAGTTTCGGACTGCT+TGG | - | chr4_3:64189873-64189892 | None:intergenic | 55.0% | |
| TGTCTCAGGCCGTAGGAAGT+AGG | - | chr4_3:64191226-64191245 | None:intergenic | 55.0% | |
| AAGCTGATGTCTCAGGCCGT+AGG | - | chr4_3:64191233-64191252 | None:intergenic | 55.0% | |
| TGACGGAGACGGGAGGAATC+CGG | - | chr4_3:64188614-64188633 | None:intergenic | 60.0% | |
| ATGGAGACGGCGGAGCGTGA+CGG | - | chr4_3:64188631-64188650 | None:intergenic | 65.0% | |
| ! | ACGGCGGAGCGTGACGGAGA+CGG | - | chr4_3:64188625-64188644 | None:intergenic | 70.0% |
| ! | CGGAGCGTGACGGAGACGGG+AGG | - | chr4_3:64188621-64188640 | None:intergenic | 75.0% |
| ! | CGGCGGAGCGTGACGGAGAC+GGG | - | chr4_3:64188624-64188643 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 64188529 | 64192168 | 64188529 | ID=Msa0655510;Name=Msa0655510 |
| chr4_3 | mRNA | 64188529 | 64192168 | 64188529 | ID=Msa0655510-mRNA-1;Parent=Msa0655510;Name=Msa0655510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|1|1|5|247|130 |
| chr4_3 | exon | 64188529 | 64188667 | 64188529 | ID=Msa0655510-mRNA-1:exon:18113;Parent=Msa0655510-mRNA-1 |
| chr4_3 | exon | 64189064 | 64189135 | 64189064 | ID=Msa0655510-mRNA-1:exon:18114;Parent=Msa0655510-mRNA-1 |
| chr4_3 | exon | 64190354 | 64190435 | 64190354 | ID=Msa0655510-mRNA-1:exon:18115;Parent=Msa0655510-mRNA-1 |
| chr4_3 | exon | 64191049 | 64191131 | 64191049 | ID=Msa0655510-mRNA-1:exon:18116;Parent=Msa0655510-mRNA-1 |
| chr4_3 | exon | 64191757 | 64192168 | 64191757 | ID=Msa0655510-mRNA-1:exon:18117;Parent=Msa0655510-mRNA-1 |
| chr4_3 | five_prime_UTR | 64188529 | 64188667 | 64188529 | ID=Msa0655510-mRNA-1:five_prime_utr;Parent=Msa0655510-mRNA-1 |
| chr4_3 | five_prime_UTR | 64189064 | 64189072 | 64189064 | ID=Msa0655510-mRNA-1:five_prime_utr;Parent=Msa0655510-mRNA-1 |
| chr4_3 | CDS | 64189073 | 64189135 | 64189073 | ID=Msa0655510-mRNA-1:cds;Parent=Msa0655510-mRNA-1 |
| chr4_3 | CDS | 64190354 | 64190435 | 64190354 | ID=Msa0655510-mRNA-1:cds;Parent=Msa0655510-mRNA-1 |
| chr4_3 | CDS | 64191049 | 64191131 | 64191049 | ID=Msa0655510-mRNA-1:cds;Parent=Msa0655510-mRNA-1 |
| chr4_3 | CDS | 64191757 | 64191921 | 64191757 | ID=Msa0655510-mRNA-1:cds;Parent=Msa0655510-mRNA-1 |
| chr4_3 | three_prime_UTR | 64191922 | 64192168 | 64191922 | ID=Msa0655510-mRNA-1:three_prime_utr;Parent=Msa0655510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
