AlfalfaGEDB | Msa0690880

M. sativa cultivar zhongmu-4 / Msa0690880

KEGG: K03939
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
PFAM: PF10276.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690880	XP_013456631.1	98.095	105	2	0	1	105	1	105	6.05e-72	219

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690880	sp\|Q9M9M6\|NDUS6_ARATH	67.257	113	26	2	1	105	1	110	2.49e-51	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690880	A0A072ULT2	98.095	105	2	0	1	105	1	105	2.89e-72	219

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0655510	Msa0690880	0.834098	3.647398e-56	-8.615850e-47
Msa0690880	Msa1106510	0.800396	1.469707e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690880	MtrunA17_Chr4g0039761	98.095	105	2	0	1	105	1	105	5.56e-76	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690880	AT3G03070.1	67.257	113	26	2	1	105	1	110	2.53e-52	160

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Find 49 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACCCCATCTGTATCAGA+TGG	0.623268	4_4:-58810807	None:intergenic
ACTTCATTGATCAGCTCCAT+TGG	0.501732	4_4:-58810321	None:intergenic
AGAATAGTTGCTTGTGAAGG+AGG	0.554370	4_4:+58810366	Msa0690880:CDS
AGTAATTTGTATGAAGCTGG+AGG	0.661114	4_4:+58810859	Msa0690880:three_prime_UTR
AGTTGTTACATCATATGCTT+TGG	0.420745	4_4:-58810730	None:intergenic
ATATTCAATTGGGTGTCCAA+GGG	0.625308	4_4:-58810545	None:intergenic
ATATTTGCAGACAGCTGGCT+TGG	0.471892	4_4:-58810584	None:intergenic
ATGCATTCTTAGTGTATGTT+TGG	0.393007	4_4:+58810980	Msa0690880:three_prime_UTR
ATGTTACCATCTGATACAGA+TGG	0.565602	4_4:+58810801	Msa0690880:three_prime_UTR
ATTCTGCCTTCGACCTTAAT+AGG	0.246449	4_4:-58810348	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTTAAATCAAACGCATG+AGG	-	chr4_4:58808765-58808784	None:intergenic	30.0%
GTAAATCATTGTTTCGCATT+TGG	+	chr4_4:58808956-58808975	Msa0690880:intron	30.0%
ACCCTTTCTCATATAATATC+AGG	-	chr4_4:58809002-58809021	None:intergenic	30.0%
GGCATAGTAGTTTAATGAAT+TGG	+	chr4_4:58809039-58809058	Msa0690880:intron	30.0%
ATTGTTTGAGCATAAGTGTA+TGG	+	chr4_4:58809324-58809343	Msa0690880:intron	30.0%
GGATATAACTATTCACTAAC+AGG	-	chr4_4:58809537-58809556	None:intergenic	30.0%
TTTCTCCCTCATTTAAACAA+GGG	+	chr4_4:58809637-58809656	Msa0690880:intron	30.0%
CAAGAGAAAACTTCTACTTA+TGG	-	chr4_4:58809702-58809721	None:intergenic	30.0%
ACAAAAGAGAAATCGAAACA+TGG	+	chr4_4:58809838-58809857	Msa0690880:intron	30.0%
TTAAACAACACAAAACACAC+AGG	-	chr4_4:58809890-58809909	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	58808555	58811001	58808555	ID=Msa0690880;Name=Msa0690880
chr4_4	mRNA	58808555	58811001	58808555	ID=Msa0690880-mRNA-1;Parent=Msa0690880;Name=Msa0690880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=67\|1\|1\|1\|1\|1\|3\|359\|105
chr4_4	exon	58808555	58808744	58808555	ID=Msa0690880-mRNA-1:exon:15872;Parent=Msa0690880-mRNA-1
chr4_4	exon	58810303	58810387	58810303	ID=Msa0690880-mRNA-1:exon:15873;Parent=Msa0690880-mRNA-1
chr4_4	exon	58810533	58811001	58810533	ID=Msa0690880-mRNA-1:exon:15874;Parent=Msa0690880-mRNA-1
chr4_4	five_prime_UTR	58808555	58808621	58808555	ID=Msa0690880-mRNA-1:five_prime_utr;Parent=Msa0690880-mRNA-1
chr4_4	CDS	58808622	58808744	58808622	ID=Msa0690880-mRNA-1:cds;Parent=Msa0690880-mRNA-1
chr4_4	CDS	58810303	58810387	58810303	ID=Msa0690880-mRNA-1:cds;Parent=Msa0690880-mRNA-1
chr4_4	CDS	58810533	58810642	58810533	ID=Msa0690880-mRNA-1:cds;Parent=Msa0690880-mRNA-1
chr4_4	three_prime_UTR	58810643	58811001	58810643	ID=Msa0690880-mRNA-1:three_prime_utr;Parent=Msa0690880-mRNA-1

Gene Sequence	>Msa0690880 ATGGCATCGAGCATTCTGAAAAACCTCGCAAAATTTTCTTCATCGACGGCGACGACCAATGCCACGAGAAGCTTCAGCCTCGTAACCTCTCAAATCAGCAACCATACCGCCAAATGGATGCAGGATACAAGCAAGAAATCTCCAATGGAGCTGATCAATGAAGTGCCACCTATTAAGGTCGAAGGCAGAATAGTTGCTTGTGAAGGAGATACTGATCCCGCCCTTGGACACCCAATTGAATATATATGCCTTGACTTGGCCAAGCCAGCTGTCTGCAAATATTGTGGCCTACGTTATGTTCAGGATCACCACCATTAG
Protein sequence	>Msa0690880 MASSILKNLAKFSSSTATTNATRSFSLVTSQISNHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDTDPALGHPIEYICLDLAKPAVCKYCGLRYVQDHHH*