Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656180 | XP_013446495.1 | 93.573 | 529 | 33 | 1 | 1 | 529 | 1 | 528 | 0.0 | 1021 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656180 | sp|Q7XII4|REM41_ORYSJ | 33.621 | 116 | 77 | 0 | 403 | 518 | 195 | 310 | 1.39e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656180 | A0A072TSX5 | 93.573 | 529 | 33 | 1 | 1 | 529 | 1 | 528 | 0.0 | 1021 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617170 | Msa0656180 | 0.825088 | 5.670373e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656180 | MtrunA17_Chr8g0376741 | 93.573 | 529 | 33 | 1 | 1 | 529 | 1 | 528 | 0.0 | 1021 |
| Msa0656180 | MtrunA17_Chr8g0375241 | 39.254 | 563 | 250 | 20 | 1 | 529 | 1 | 505 | 7.24e-79 | 256 |
| Msa0656180 | MtrunA17_Chr8g0377061 | 39.241 | 237 | 109 | 5 | 289 | 524 | 151 | 353 | 4.30e-36 | 137 |
| Msa0656180 | MtrunA17_Chr8g0345191 | 27.226 | 393 | 243 | 12 | 152 | 525 | 86 | 454 | 1.90e-18 | 88.2 |
| Msa0656180 | MtrunA17_Chr1g0153281 | 24.557 | 395 | 246 | 11 | 144 | 525 | 262 | 617 | 2.08e-16 | 82.4 |
| Msa0656180 | MtrunA17_Chr1g0173571 | 33.654 | 104 | 69 | 0 | 415 | 518 | 164 | 267 | 9.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656180 | AT1G30320.1 | 52.995 | 551 | 194 | 18 | 1 | 529 | 1 | 508 | 6.72e-168 | 485 |
| Msa0656180 | AT2G02170.1 | 37.091 | 550 | 256 | 20 | 1 | 525 | 1 | 485 | 3.43e-68 | 228 |
| Msa0656180 | AT2G02170.2 | 37.091 | 550 | 256 | 20 | 1 | 525 | 1 | 485 | 3.43e-68 | 228 |
| Msa0656180 | AT2G02170.5 | 37.091 | 550 | 256 | 20 | 1 | 525 | 1 | 485 | 3.43e-68 | 228 |
| Msa0656180 | AT2G02170.4 | 37.091 | 550 | 256 | 20 | 1 | 525 | 1 | 485 | 3.43e-68 | 228 |
| Msa0656180 | AT2G02170.3 | 41.361 | 382 | 189 | 11 | 154 | 525 | 4 | 360 | 8.53e-61 | 204 |
| Msa0656180 | AT2G02170.6 | 41.361 | 382 | 189 | 11 | 154 | 525 | 4 | 360 | 8.53e-61 | 204 |
| Msa0656180 | AT1G67590.1 | 31.043 | 393 | 184 | 10 | 136 | 520 | 20 | 333 | 1.74e-41 | 152 |
| Msa0656180 | AT1G67590.2 | 29.080 | 337 | 152 | 10 | 136 | 464 | 20 | 277 | 1.00e-26 | 110 |
| Msa0656180 | AT1G53860.1 | 27.072 | 362 | 188 | 11 | 158 | 508 | 119 | 415 | 8.46e-16 | 80.1 |
| Msa0656180 | AT1G53860.2 | 27.072 | 362 | 188 | 11 | 158 | 508 | 51 | 347 | 1.08e-15 | 79.3 |
Find 153 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGATGCTCATTCGGTTTC+TGG | 0.054272 | 4_3:+65409632 | Msa0656180:CDS |
| TCTCATTTCGGCTTCTAATT+TGG | 0.168366 | 4_3:-65410560 | None:intergenic |
| GTTGAAGGCATTGATGAAAT+TGG | 0.206244 | 4_3:-65410100 | None:intergenic |
| TCCCCAAAGCAAAGATTTAA+AGG | 0.207930 | 4_3:+65409691 | Msa0656180:CDS |
| CTGTTTGTGTGTAATTAATT+TGG | 0.208188 | 4_3:-65408042 | None:intergenic |
| AAACTGAGGATGAAGTTATT+AGG | 0.255888 | 4_3:+65408669 | Msa0656180:CDS |
| AGCCTCTTACACCATACTTA+TGG | 0.262246 | 4_3:-65411535 | None:intergenic |
| CTTCCTTTAAATCTTTGCTT+TGG | 0.266613 | 4_3:-65409694 | None:intergenic |
| GCCACAACACGTAATGTAAT+TGG | 0.275408 | 4_3:-65411226 | None:intergenic |
| TGCACCAGCTCCTACGCCTT+TGG | 0.284602 | 4_3:+65410135 | Msa0656180:CDS |
| TTCCTTTAAATCTTTGCTTT+GGG | 0.293865 | 4_3:-65409693 | None:intergenic |
| TAACTTCATCCTCAGTTTAC+TGG | 0.294315 | 4_3:-65408664 | None:intergenic |
| AGTAAGCTATTGACAAATTC+AGG | 0.298061 | 4_3:-65408756 | None:intergenic |
| GTTTGAAAATTACAAGGTTT+TGG | 0.308450 | 4_3:-65411362 | None:intergenic |
| TCCAGTACCGCATCCCTAAA+TGG | 0.308863 | 4_3:-65409140 | None:intergenic |
| ACACGTAATGTAATTGGAAT+AGG | 0.310425 | 4_3:-65411220 | None:intergenic |
| GAAACAGTTCCCGTGGAAAA+TGG | 0.328810 | 4_3:+65409176 | Msa0656180:CDS |
| TCAGCATCGTTCCACTTAGA+AGG | 0.334515 | 4_3:-65409392 | None:intergenic |
| CCCTTTGTCAAACTCAAAAC+TGG | 0.341698 | 4_3:-65409321 | None:intergenic |
| ATCTGTTGCCATGAGAGATA+TGG | 0.344001 | 4_3:+65409997 | Msa0656180:CDS |
| CTTTATCTTCATTTCTTCTT+CGG | 0.345166 | 4_3:-65410215 | None:intergenic |
| TGAATTGTGCTCGAACTTCC+AGG | 0.345437 | 4_3:-65409242 | None:intergenic |
| AAGGTTCTTGACTTGGCAAC+GGG | 0.361658 | 4_3:-65410033 | None:intergenic |
| TACCTCGGTTCTTCTCATTT+CGG | 0.362154 | 4_3:-65410572 | None:intergenic |
| TGCTCTCATTTGCTCAACTT+TGG | 0.363358 | 4_3:-65411052 | None:intergenic |
| GCACCAGCTCCTACGCCTTT+GGG | 0.363364 | 4_3:+65410136 | Msa0656180:CDS |
| TTTCTGCAACCTTGCTTGTC+GGG | 0.363834 | 4_3:-65409538 | None:intergenic |
| CAGCCCTTGGTATGCAGCTT+GGG | 0.366210 | 4_3:+65410254 | Msa0656180:CDS |
| GCCATTTAGGGATGCGGTAC+TGG | 0.367524 | 4_3:+65409139 | Msa0656180:CDS |
| TTTGTCATCAAAGCCATTTA+GGG | 0.376925 | 4_3:+65409127 | Msa0656180:CDS |
| TTCGACGACCCTATCCTTCA+AGG | 0.377104 | 4_3:-65411318 | None:intergenic |
| TAGAAGGAATGGGTCTCAAC+AGG | 0.380772 | 4_3:-65409376 | None:intergenic |
| AAATCGCCTGCCAACAAGTA+TGG | 0.387255 | 4_3:+65409475 | Msa0656180:CDS |
| GTTTCTGCAACCTTGCTTGT+CGG | 0.387691 | 4_3:-65409539 | None:intergenic |
| GCCTCTTACACCATACTTAT+GGG | 0.389667 | 4_3:-65411534 | None:intergenic |
| AACTGAGGATGAAGTTATTA+GGG | 0.391166 | 4_3:+65408670 | Msa0656180:CDS |
| AAGTCAATGTCCCATAAGTA+TGG | 0.393607 | 4_3:+65411524 | Msa0656180:three_prime_UTR |
| CTTCTAGAACATCCCCTTCA+AGG | 0.398699 | 4_3:+65408724 | Msa0656180:CDS |
| GGTGAAAAGATAAGCAATCT+TGG | 0.400192 | 4_3:-65411297 | None:intergenic |
| GCAGAATACATACGCCAAAC+AGG | 0.401814 | 4_3:+65411189 | Msa0656180:CDS |
| TGTTCCATCCGATGCTCATT+CGG | 0.404795 | 4_3:+65409625 | Msa0656180:CDS |
| ATTAGAGCAAACAACTCAAT+TGG | 0.408849 | 4_3:-65411464 | None:intergenic |
| TCTAATGATGCAGCATTTCC+CGG | 0.413013 | 4_3:+65409968 | Msa0656180:intron |
| CTGAGAAATGGATAATGAAT+AGG | 0.424917 | 4_3:+65409411 | Msa0656180:CDS |
| TCTATTCTCTCATACTCCAT+TGG | 0.425498 | 4_3:-65408075 | None:intergenic |
| GATGAAATTGGGCTGCGAAT+TGG | 0.427717 | 4_3:-65410088 | None:intergenic |
| GAGCTTATGATCAAAATTAC+CGG | 0.430720 | 4_3:-65409516 | None:intergenic |
| CACGTAATGTAATTGGAATA+GGG | 0.435360 | 4_3:-65411219 | None:intergenic |
| TCAGGATCCTCAAGCCTTGA+AGG | 0.437428 | 4_3:-65408738 | None:intergenic |
| AGATCTTCAACATACCTGTT+TGG | 0.440565 | 4_3:-65409757 | None:intergenic |
| TTGGATCCATCCTTCTTCCT+AGG | 0.443938 | 4_3:-65408693 | None:intergenic |
| ATTGGAGTTGCCGAACCAAC+AGG | 0.447886 | 4_3:-65410070 | None:intergenic |
| GAACTGTTTCCTTTAGTCTC+TGG | 0.449190 | 4_3:-65409163 | None:intergenic |
| TCCAATTACATTACGTGTTG+TGG | 0.449449 | 4_3:+65411225 | Msa0656180:CDS |
| GTCTGCGAAGGTTCTTGACT+TGG | 0.450199 | 4_3:-65410040 | None:intergenic |
| GACAACCACTCCTGTTGGTT+CGG | 0.450723 | 4_3:+65410060 | Msa0656180:CDS |
| ACAACCCTTGCCATACTTGT+TGG | 0.452228 | 4_3:-65409485 | None:intergenic |
| ATCGTTCCACTTAGAAGGAA+TGG | 0.453008 | 4_3:-65409387 | None:intergenic |
| AGTGGAACGATGCTGAGAAA+TGG | 0.454482 | 4_3:+65409399 | Msa0656180:CDS |
| GATGACAAAACTTCTAAACT+TGG | 0.458007 | 4_3:-65409113 | None:intergenic |
| GTGAGAGAAAGAGAGAGAGT+TGG | 0.459371 | 4_3:-65407889 | None:intergenic |
| TCATCTTCTGTTGTCCTCAC+CGG | 0.465871 | 4_3:-65409266 | None:intergenic |
| GCAGCCCTTGGTATGCAGCT+TGG | 0.466742 | 4_3:+65410253 | Msa0656180:CDS |
| TTGAAGGCATTGATGAAATT+GGG | 0.468593 | 4_3:-65410099 | None:intergenic |
| TCCCATAAGTATGGTGTAAG+AGG | 0.471375 | 4_3:+65411533 | Msa0656180:three_prime_UTR |
| GCACCTCTCCTAGGAGTTGA+AGG | 0.472388 | 4_3:-65410115 | None:intergenic |
| CATCAATGCCTTCAACTCCT+AGG | 0.472519 | 4_3:+65410107 | Msa0656180:CDS |
| TGTTTGTGTTTGTGTTGTGT+TGG | 0.473121 | 4_3:-65407848 | None:intergenic |
| GGATGAAGTTATTAGGGCCT+AGG | 0.474251 | 4_3:+65408676 | Msa0656180:CDS |
| GCAAGGGTTGTTCCAGAGTC+CGG | 0.475806 | 4_3:+65409497 | Msa0656180:CDS |
| AACTTCATCCTCAGTTTACT+GGG | 0.484791 | 4_3:-65408663 | None:intergenic |
| TGATCAAAATTACCGGACTC+TGG | 0.489006 | 4_3:-65409509 | None:intergenic |
| CATGTAAGCAACTTGCGCTC+AGG | 0.493031 | 4_3:-65411386 | None:intergenic |
| TGGGGAAAAGATTCCACTAC+AGG | 0.495981 | 4_3:-65409674 | None:intergenic |
| ATCAAGGTTGTCGTCGTTGG+AGG | 0.498146 | 4_3:-65408781 | None:intergenic |
| TCTGTTGCCATGAGAGATAT+GGG | 0.500342 | 4_3:+65409998 | Msa0656180:CDS |
| ATAATCAAGGTTGTCGTCGT+TGG | 0.504529 | 4_3:-65408784 | None:intergenic |
| CCCTTGCCATACTTGTTGGC+AGG | 0.505907 | 4_3:-65409481 | None:intergenic |
| CATGGCAACAGATCTTATAC+CGG | 0.506420 | 4_3:-65409987 | None:intergenic |
| TCGTTCCACTTAGAAGGAAT+GGG | 0.516101 | 4_3:-65409386 | None:intergenic |
| TAGCCCAAAGGCGTAGGAGC+TGG | 0.518675 | 4_3:-65410139 | None:intergenic |
| GTTTGACAAAGGGGAGAGAC+CGG | 0.519048 | 4_3:+65409331 | Msa0656180:CDS |
| TCGGTTTCTGGTCAAGCACA+TGG | 0.522303 | 4_3:+65409644 | Msa0656180:CDS |
| GTTATTAGGGCCTAGGAAGA+AGG | 0.524411 | 4_3:+65408683 | Msa0656180:CDS |
| GAAGGTTCTTGACTTGGCAA+CGG | 0.526189 | 4_3:-65410034 | None:intergenic |
| AGGAGAGAGATTGCAGCCCT+TGG | 0.526966 | 4_3:+65410241 | Msa0656180:CDS |
| ACAAGTATAGATGACCAAAC+AGG | 0.527668 | 4_3:+65409743 | Msa0656180:CDS |
| TGAGACCCATTCCTTCTAAG+TGG | 0.527682 | 4_3:+65409381 | Msa0656180:CDS |
| TCCTTTAAATCTTTGCTTTG+GGG | 0.528138 | 4_3:-65409692 | None:intergenic |
| ATAGCCTACCTTCATAATCA+AGG | 0.534055 | 4_3:-65408797 | None:intergenic |
| CTCAGTTCCCATATCTCTCA+TGG | 0.536233 | 4_3:-65410005 | None:intergenic |
| AAGTTCGAGCACAATTCATC+CGG | 0.540711 | 4_3:+65409247 | Msa0656180:CDS |
| GGAGCTGGTGCACCTCTCCT+AGG | 0.542004 | 4_3:-65410124 | None:intergenic |
| CAGGATCCTCAAGCCTTGAA+GGG | 0.542529 | 4_3:-65408737 | None:intergenic |
| TTTAAAGGAAGTAAATGAAG+TGG | 0.542565 | 4_3:+65409706 | Msa0656180:CDS |
| AAGAAATGAAGATAAAGACT+AGG | 0.548657 | 4_3:+65410221 | Msa0656180:CDS |
| TGTTCTAGAAGAGTTACTGT+TGG | 0.549712 | 4_3:-65408712 | None:intergenic |
| ATCAAAGCCATTTAGGGATG+CGG | 0.550723 | 4_3:+65409133 | Msa0656180:CDS |
| AGGAAATCAAAATTCAAGCA+TGG | 0.550902 | 4_3:+65410521 | Msa0656180:CDS |
| GGAAATCAAAATTCAAGCAT+GGG | 0.551510 | 4_3:+65410522 | Msa0656180:CDS |
| GAAAATGAATATTGCGGCGT+GGG | 0.554349 | 4_3:+65410276 | Msa0656180:CDS |
| TGAGAGAATAGAGAAACCTC+AGG | 0.556045 | 4_3:+65408086 | Msa0656180:CDS |
| ATTACATTACGTGTTGTGGC+TGG | 0.559591 | 4_3:+65411229 | Msa0656180:CDS |
| TCGAAACTGTGGATCCTCGT+CGG | 0.560113 | 4_3:-65410167 | None:intergenic |
| GAGAGAGTTGGAGAAAGAAG+AGG | 0.561329 | 4_3:-65407877 | None:intergenic |
| TTGTTGGCAGGCGATTTGCT+TGG | 0.565501 | 4_3:-65409469 | None:intergenic |
| AAACAGAAAGAAAGATCCAA+TGG | 0.572222 | 4_3:+65408059 | Msa0656180:exon |
| AACATCCCCTTCAAGGCTTG+AGG | 0.575361 | 4_3:+65408731 | Msa0656180:CDS |
| ACCAACATCACATTCACATA+CGG | 0.575560 | 4_3:+65409583 | Msa0656180:CDS |
| GCCTGCCAACAAGTATGGCA+AGG | 0.577085 | 4_3:+65409480 | Msa0656180:CDS |
| ACCAGAAACCGAATGAGCAT+CGG | 0.577314 | 4_3:-65409633 | None:intergenic |
| GTATGGTGTAAGAGGCTGTA+GGG | 0.579549 | 4_3:+65411541 | Msa0656180:three_prime_UTR |
| TCGCAGACAACCACTCCTGT+TGG | 0.579751 | 4_3:+65410055 | Msa0656180:CDS |
| TCAGGTGTTTGAAAATTACA+AGG | 0.580529 | 4_3:-65411368 | None:intergenic |
| ACATGGAAAACCACCTGTAG+TGG | 0.584283 | 4_3:+65409661 | Msa0656180:CDS |
| ACAGGAGTGGTTGTCTGCGA+AGG | 0.590207 | 4_3:-65410052 | None:intergenic |
| GCCGTATGTGAATGTGATGT+TGG | 0.590663 | 4_3:-65409584 | None:intergenic |
| TCGTCGGTTGTGTAGCCCAA+AGG | 0.592006 | 4_3:-65410151 | None:intergenic |
| TTTCCCAAGCTGCATACCAA+GGG | 0.594079 | 4_3:-65410257 | None:intergenic |
| GGAAAAGATTCCACTACAGG+TGG | 0.603799 | 4_3:-65409671 | None:intergenic |
| GTTGTGTAGCCCAAAGGCGT+AGG | 0.603993 | 4_3:-65410145 | None:intergenic |
| GTTCTTTAGTATCTGTGTCG+CGG | 0.605999 | 4_3:-65410336 | None:intergenic |
| GCTGTTAATATAAATGTACA+AGG | 0.616736 | 4_3:+65411495 | Msa0656180:three_prime_UTR |
| AGCATGGGAAAGTCAGCAGA+AGG | 0.617084 | 4_3:+65410537 | Msa0656180:CDS |
| CAGAATACATACGCCAAACA+GGG | 0.617750 | 4_3:+65411190 | Msa0656180:CDS |
| GAATTGTGCTCGAACTTCCA+GGG | 0.618945 | 4_3:-65409241 | None:intergenic |
| GACGACAACCTTGATTATGA+AGG | 0.620247 | 4_3:+65408789 | Msa0656180:CDS |
| TTAGGGCCTAGGAAGAAGGA+TGG | 0.620809 | 4_3:+65408687 | Msa0656180:CDS |
| ATGGCAACAGATCTTATACC+GGG | 0.621195 | 4_3:-65409986 | None:intergenic |
| CTACTTACATGATTGCTCAC+CGG | 0.624396 | 4_3:-65409350 | None:intergenic |
| AGAAGGAATGGGTCTCAACA+GGG | 0.625031 | 4_3:-65409375 | None:intergenic |
| CCTGCCAACAAGTATGGCAA+GGG | 0.630195 | 4_3:+65409481 | Msa0656180:CDS |
| AGTATGGTGTAAGAGGCTGT+AGG | 0.632019 | 4_3:+65411540 | Msa0656180:three_prime_UTR |
| AGGATCCTCAAGCCTTGAAG+GGG | 0.632192 | 4_3:-65408736 | None:intergenic |
| CCCGTGGAAAATGGTGACAC+AGG | 0.636739 | 4_3:+65409185 | Msa0656180:CDS |
| GGAAAATGAATATTGCGGCG+TGG | 0.638919 | 4_3:+65410275 | Msa0656180:CDS |
| AACTTGCAGATTAAAGCGTG+AGG | 0.643053 | 4_3:+65410501 | Msa0656180:intron |
| GGTACTGGACCAGAGACTAA+AGG | 0.644572 | 4_3:+65409154 | Msa0656180:CDS |
| ACTAAAGGAAACAGTTCCCG+TGG | 0.646554 | 4_3:+65409169 | Msa0656180:CDS |
| TCATAAGCTCCCGACAAGCA+AGG | 0.648251 | 4_3:+65409529 | Msa0656180:CDS |
| TTGTGTGTAATTAATTTGGA+AGG | 0.651756 | 4_3:-65408038 | None:intergenic |
| ATGCCTTCAACTCCTAGGAG+AGG | 0.654548 | 4_3:+65410112 | Msa0656180:CDS |
| GAAACCGAATGAGCATCGGA+TGG | 0.659064 | 4_3:-65409629 | None:intergenic |
| AGTTGCCGAACCAACAGGAG+TGG | 0.660068 | 4_3:-65410065 | None:intergenic |
| GCTTGGGAAAATGAATATTG+CGG | 0.668278 | 4_3:+65410270 | Msa0656180:CDS |
| AGCCGAAATGAGAAGAACCG+AGG | 0.675110 | 4_3:+65410570 | Msa0656180:CDS |
| TAATGTAGCAGAGAAGATGA+CGG | 0.684425 | 4_3:-65408009 | None:intergenic |
| TAATATCTCCCAGTAAACTG+AGG | 0.691890 | 4_3:+65408655 | Msa0656180:CDS |
| CTGTGAGATATATAACATTG+TGG | 0.693122 | 4_3:+65411252 | Msa0656180:exon |
| CGAGCACAATTCATCCGGTG+AGG | 0.693910 | 4_3:+65409252 | Msa0656180:CDS |
| AAAACGTGCTGCTTTGTGGG+AGG | 0.698856 | 4_3:+65410378 | Msa0656180:CDS |
| AGGTTCTTGACTTGGCAACG+GGG | 0.722190 | 4_3:-65410032 | None:intergenic |
| TTTGGGCTACACAACCGACG+AGG | 0.749134 | 4_3:+65410153 | Msa0656180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAACAAATTTATGAG+AGG | - | chr4_3:65408248-65408267 | None:intergenic | 15.0% |
| !! | TATTATTATTTCGAAGTAAA+TGG | + | chr4_3:65408261-65408280 | Msa0656180:intron | 15.0% |
| !!! | TTTCAAAAATTATACTTTTG+TGG | + | chr4_3:65408350-65408369 | Msa0656180:intron | 15.0% |
| !! | ATTTGTCATAATTAATTGTT+TGG | + | chr4_3:65408389-65408408 | Msa0656180:intron | 15.0% |
| !! | ATAATTACATTTCAAAAATC+AGG | - | chr4_3:65410471-65410490 | None:intergenic | 15.0% |
| !!! | GTGATACATGTTAAAATTTT+GGG | + | chr4_3:65408504-65408523 | Msa0656180:intron | 20.0% |
| !!! | TGATACATGTTAAAATTTTG+GGG | + | chr4_3:65408505-65408524 | Msa0656180:intron | 20.0% |
| !!! | TGTAGAATTTTGTATTCTTT+TGG | + | chr4_3:65409056-65409075 | Msa0656180:intron | 20.0% |
| !! | CAAATCGTGTTAATATTATA+TGG | - | chr4_3:65409790-65409809 | None:intergenic | 20.0% |
| !!! | TTATAAAGCATTATGAACTA+AGG | + | chr4_3:65410671-65410690 | Msa0656180:intron | 20.0% |
| !!! | TTATACGTACTTTTTCATAA+GGG | - | chr4_3:65410758-65410777 | None:intergenic | 20.0% |
| !!! | TTTATACGTACTTTTTCATA+AGG | - | chr4_3:65410759-65410778 | None:intergenic | 20.0% |
| !! | TATAAATTTCGCATTGTTTA+TGG | + | chr4_3:65410773-65410792 | Msa0656180:intron | 20.0% |
| !!! | ATAATGGAAAGAAAATCATA+TGG | - | chr4_3:65410930-65410949 | None:intergenic | 20.0% |
| !! | TTCACATTGCAATTAAATAA+TGG | - | chr4_3:65410946-65410965 | None:intergenic | 20.0% |
| !! | TTGAAACTATATGCAAATAT+AGG | + | chr4_3:65411029-65411048 | Msa0656180:intron | 20.0% |
| !! | TTGTGTGTAATTAATTTGGA+AGG | - | chr4_3:65408041-65408060 | None:intergenic | 25.0% |
| ! | CTGTTTGTGTGTAATTAATT+TGG | - | chr4_3:65408045-65408064 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCTTTCACAAACT+GGG | + | chr4_3:65408199-65408218 | Msa0656180:intron | 25.0% |
| ! | ACAAATTTATGAGAGGAAAA+AGG | - | chr4_3:65408241-65408260 | None:intergenic | 25.0% |
| !! | AATTATACTTTTGTGGTCAA+TGG | + | chr4_3:65408357-65408376 | Msa0656180:intron | 25.0% |
| !! | GGTGATACATGTTAAAATTT+TGG | + | chr4_3:65408503-65408522 | Msa0656180:intron | 25.0% |
| !! | GATACATGTTAAAATTTTGG+GGG | + | chr4_3:65408506-65408525 | Msa0656180:intron | 25.0% |
| ! | ATTAGTTATGAGGCTAAATA+TGG | + | chr4_3:65408601-65408620 | Msa0656180:intron | 25.0% |
| ! | ACATTAAACAACATTTATCC+CGG | + | chr4_3:65409025-65409044 | Msa0656180:intron | 25.0% |
| ! | TTCCTTTAAATCTTTGCTTT+GGG | - | chr4_3:65409696-65409715 | None:intergenic | 25.0% |
| ! | TTTAAAGGAAGTAAATGAAG+TGG | + | chr4_3:65409706-65409725 | Msa0656180:CDS | 25.0% |
| ! | CTTTATCTTCATTTCTTCTT+CGG | - | chr4_3:65410218-65410237 | None:intergenic | 25.0% |
| ! | AAGAAATGAAGATAAAGACT+AGG | + | chr4_3:65410221-65410240 | Msa0656180:CDS | 25.0% |
| ! | AAAAATCTAAACATACTGCA+AGG | + | chr4_3:65410407-65410426 | Msa0656180:CDS | 25.0% |
| !! | GTTTGAAAATTACAAGGTTT+TGG | - | chr4_3:65411365-65411384 | None:intergenic | 25.0% |
| ! | GCTGTTAATATAAATGTACA+AGG | + | chr4_3:65411495-65411514 | Msa0656180:three_prime_UTR | 25.0% |
| AAACAGAAAGAAAGATCCAA+TGG | + | chr4_3:65408059-65408078 | Msa0656180:exon | 30.0% | |
| AAATCAAGCTAAAGGAATGT+TGG | - | chr4_3:65408119-65408138 | None:intergenic | 30.0% | |
| ACAAGATGAAATCAAGCTAA+AGG | - | chr4_3:65408127-65408146 | None:intergenic | 30.0% | |
| !! | TTTAGCTTGATTTCATCTTG+TGG | + | chr4_3:65408126-65408145 | Msa0656180:intron | 30.0% |
| ! | TTAGCTTGATTTCATCTTGT+GGG | + | chr4_3:65408127-65408146 | Msa0656180:intron | 30.0% |
| ! | GTAAAAAGCATGAGCTAAAA+TGG | - | chr4_3:65408162-65408181 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTCTTTCACAAAC+TGG | + | chr4_3:65408198-65408217 | Msa0656180:intron | 30.0% |
| !! | ATAATTAATTGTTTGGTGCG+CGG | + | chr4_3:65408396-65408415 | Msa0656180:intron | 30.0% |
| !! | CATTTTTCTTCTGAGGAAAA+AGG | + | chr4_3:65408482-65408501 | Msa0656180:intron | 30.0% |
| ! | GTTGTTCTAGATTAGTTATG+AGG | + | chr4_3:65408591-65408610 | Msa0656180:intron | 30.0% |
| AAACTGAGGATGAAGTTATT+AGG | + | chr4_3:65408669-65408688 | Msa0656180:CDS | 30.0% | |
| AACTGAGGATGAAGTTATTA+GGG | + | chr4_3:65408670-65408689 | Msa0656180:CDS | 30.0% | |
| AGTAAGCTATTGACAAATTC+AGG | - | chr4_3:65408759-65408778 | None:intergenic | 30.0% | |
| !! | TCTTTGTAGCATTGACATTT+CGG | + | chr4_3:65408863-65408882 | Msa0656180:intron | 30.0% |
| AAAATTCTACAATCACACAC+CGG | - | chr4_3:65409047-65409066 | None:intergenic | 30.0% | |
| GATGACAAAACTTCTAAACT+TGG | - | chr4_3:65409116-65409135 | None:intergenic | 30.0% | |
| ! | TTTTGTCATCAAAGCCATTT+AGG | + | chr4_3:65409126-65409145 | Msa0656180:CDS | 30.0% |
| TTTGTCATCAAAGCCATTTA+GGG | + | chr4_3:65409127-65409146 | Msa0656180:CDS | 30.0% | |
| ! | AAAGATGCAGCATTTTCATA+AGG | + | chr4_3:65409214-65409233 | Msa0656180:CDS | 30.0% |
| CTGAGAAATGGATAATGAAT+AGG | + | chr4_3:65409411-65409430 | Msa0656180:CDS | 30.0% | |
| GAGCTTATGATCAAAATTAC+CGG | - | chr4_3:65409519-65409538 | None:intergenic | 30.0% | |
| TCCTTTAAATCTTTGCTTTG+GGG | - | chr4_3:65409695-65409714 | None:intergenic | 30.0% | |
| CTTCCTTTAAATCTTTGCTT+TGG | - | chr4_3:65409697-65409716 | None:intergenic | 30.0% | |
| !! | TTGAAGGCATTGATGAAATT+GGG | - | chr4_3:65410102-65410121 | None:intergenic | 30.0% |
| GAAGAAAGTAAAAAATCTGC+TGG | + | chr4_3:65410313-65410332 | Msa0656180:CDS | 30.0% | |
| AGGAAATCAAAATTCAAGCA+TGG | + | chr4_3:65410521-65410540 | Msa0656180:CDS | 30.0% | |
| GGAAATCAAAATTCAAGCAT+GGG | + | chr4_3:65410522-65410541 | Msa0656180:CDS | 30.0% | |
| AATCTCTTCAAATCACACTT+AGG | - | chr4_3:65410653-65410672 | None:intergenic | 30.0% | |
| CATGAAAAGCTTTCATAAGT+TGG | - | chr4_3:65410714-65410733 | None:intergenic | 30.0% | |
| TGCAATGTGAATTTAGAGAT+AGG | + | chr4_3:65410955-65410974 | Msa0656180:intron | 30.0% | |
| AATGGTGAAAAAGATTGCTA+TGG | + | chr4_3:65411089-65411108 | Msa0656180:CDS | 30.0% | |
| CACGTAATGTAATTGGAATA+GGG | - | chr4_3:65411222-65411241 | None:intergenic | 30.0% | |
| ACACGTAATGTAATTGGAAT+AGG | - | chr4_3:65411223-65411242 | None:intergenic | 30.0% | |
| CTGTGAGATATATAACATTG+TGG | + | chr4_3:65411252-65411271 | Msa0656180:exon | 30.0% | |
| TCAGGTGTTTGAAAATTACA+AGG | - | chr4_3:65411371-65411390 | None:intergenic | 30.0% | |
| ATTAGAGCAAACAACTCAAT+TGG | - | chr4_3:65411467-65411486 | None:intergenic | 30.0% | |
| ! | TAGGGACATTTTATATGCTA+AGG | + | chr4_3:65411559-65411578 | Msa0656180:three_prime_UTR | 30.0% |
| ! | ACATTTTATATGCTAAGGCA+CGG | + | chr4_3:65411564-65411583 | Msa0656180:three_prime_UTR | 30.0% |
| TGTTTGTGTTTGTGTTGTGT+TGG | - | chr4_3:65407851-65407870 | None:intergenic | 35.0% | |
| TAATGTAGCAGAGAAGATGA+CGG | - | chr4_3:65408012-65408031 | None:intergenic | 35.0% | |
| TCTATTCTCTCATACTCCAT+TGG | - | chr4_3:65408078-65408097 | None:intergenic | 35.0% | |
| TAGCTTGATTTCATCTTGTG+GGG | + | chr4_3:65408128-65408147 | Msa0656180:intron | 35.0% | |
| !! | TAATTAATTGTTTGGTGCGC+GGG | + | chr4_3:65408397-65408416 | Msa0656180:intron | 35.0% |
| GGGAAAAAGGAGAGAAAAAA+AGG | + | chr4_3:65408417-65408436 | Msa0656180:intron | 35.0% | |
| !! | TTGCTCTCATTTTTCTTCTG+AGG | + | chr4_3:65408475-65408494 | Msa0656180:intron | 35.0% |
| TAATATCTCCCAGTAAACTG+AGG | + | chr4_3:65408655-65408674 | Msa0656180:CDS | 35.0% | |
| AACTTCATCCTCAGTTTACT+GGG | - | chr4_3:65408666-65408685 | None:intergenic | 35.0% | |
| TAACTTCATCCTCAGTTTAC+TGG | - | chr4_3:65408667-65408686 | None:intergenic | 35.0% | |
| !! | TGTTCTAGAAGAGTTACTGT+TGG | - | chr4_3:65408715-65408734 | None:intergenic | 35.0% |
| ACAACCTTGATTATGAAGGT+AGG | + | chr4_3:65408793-65408812 | Msa0656180:intron | 35.0% | |
| ATAGCCTACCTTCATAATCA+AGG | - | chr4_3:65408800-65408819 | None:intergenic | 35.0% | |
| TATCGAACATAGACACATGT+CGG | - | chr4_3:65408909-65408928 | None:intergenic | 35.0% | |
| ATGTTCGATACTGATACATG+TGG | + | chr4_3:65408919-65408938 | Msa0656180:intron | 35.0% | |
| !! | ACATTGTCACTTTGAGAAAG+TGG | - | chr4_3:65408959-65408978 | None:intergenic | 35.0% |
| AAATTCTACAATCACACACC+GGG | - | chr4_3:65409046-65409065 | None:intergenic | 35.0% | |
| TCTAAACTTGGAGATGTAAC+TGG | - | chr4_3:65409104-65409123 | None:intergenic | 35.0% | |
| !!! | TCCAGTTTTGAGTTTGACAA+AGG | + | chr4_3:65409320-65409339 | Msa0656180:CDS | 35.0% |
| !!! | CCAGTTTTGAGTTTGACAAA+GGG | + | chr4_3:65409321-65409340 | Msa0656180:CDS | 35.0% |
| !!! | CAGTTTTGAGTTTGACAAAG+GGG | + | chr4_3:65409322-65409341 | Msa0656180:CDS | 35.0% |
| ACCAACATCACATTCACATA+CGG | + | chr4_3:65409583-65409602 | Msa0656180:CDS | 35.0% | |
| TCCCCAAAGCAAAGATTTAA+AGG | + | chr4_3:65409691-65409710 | Msa0656180:CDS | 35.0% | |
| ACAAGTATAGATGACCAAAC+AGG | + | chr4_3:65409743-65409762 | Msa0656180:CDS | 35.0% | |
| AGATCTTCAACATACCTGTT+TGG | - | chr4_3:65409760-65409779 | None:intergenic | 35.0% | |
| !! | GTTGAAGGCATTGATGAAAT+TGG | - | chr4_3:65410103-65410122 | None:intergenic | 35.0% |
| ! | CTGTTTTCATTTCGAAACTG+TGG | - | chr4_3:65410181-65410200 | None:intergenic | 35.0% |
| GCTTGGGAAAATGAATATTG+CGG | + | chr4_3:65410270-65410289 | Msa0656180:CDS | 35.0% | |
| !! | TCAGGTTTACTTTTGTCTAG+AGG | - | chr4_3:65410453-65410472 | None:intergenic | 35.0% |
| TCTCATTTCGGCTTCTAATT+TGG | - | chr4_3:65410563-65410582 | None:intergenic | 35.0% | |
| ! | CTTTTGCAGAGTCTATTGAT+TGG | + | chr4_3:65410601-65410620 | Msa0656180:intron | 35.0% |
| TCCAATTACATTACGTGTTG+TGG | + | chr4_3:65411225-65411244 | Msa0656180:CDS | 35.0% | |
| GGTGAAAAGATAAGCAATCT+TGG | - | chr4_3:65411300-65411319 | None:intergenic | 35.0% | |
| ! | TGCTTATCTTTTCACCTTGA+AGG | + | chr4_3:65411304-65411323 | Msa0656180:three_prime_UTR | 35.0% |
| ! | ATCTTTTCACCTTGAAGGAT+AGG | + | chr4_3:65411309-65411328 | Msa0656180:three_prime_UTR | 35.0% |
| ! | TCTTTTCACCTTGAAGGATA+GGG | + | chr4_3:65411310-65411329 | Msa0656180:three_prime_UTR | 35.0% |
| AAGTCAATGTCCCATAAGTA+TGG | + | chr4_3:65411524-65411543 | Msa0656180:three_prime_UTR | 35.0% | |
| TGAGAGAATAGAGAAACCTC+AGG | + | chr4_3:65408086-65408105 | Msa0656180:CDS | 40.0% | |
| !! | TGCTTTTTAAACCTGCAGAC+TGG | + | chr4_3:65408630-65408649 | Msa0656180:intron | 40.0% |
| GAGATATTATTCCAGTCTGC+AGG | - | chr4_3:65408644-65408663 | None:intergenic | 40.0% | |
| ATAATCAAGGTTGTCGTCGT+TGG | - | chr4_3:65408787-65408806 | None:intergenic | 40.0% | |
| GACGACAACCTTGATTATGA+AGG | + | chr4_3:65408789-65408808 | Msa0656180:CDS | 40.0% | |
| ! | GCATTGACATTTCGGATTGA+AGG | + | chr4_3:65408871-65408890 | Msa0656180:intron | 40.0% |
| ! | TTTCGGATTGAAGGTGTGTT+TGG | + | chr4_3:65408880-65408899 | Msa0656180:intron | 40.0% |
| AACTTGGAGATGTAACTGGA+AGG | - | chr4_3:65409100-65409119 | None:intergenic | 40.0% | |
| ATCAAAGCCATTTAGGGATG+CGG | + | chr4_3:65409133-65409152 | Msa0656180:CDS | 40.0% | |
| GAACTGTTTCCTTTAGTCTC+TGG | - | chr4_3:65409166-65409185 | None:intergenic | 40.0% | |
| AAGTTCGAGCACAATTCATC+CGG | + | chr4_3:65409247-65409266 | Msa0656180:CDS | 40.0% | |
| CCCTTTGTCAAACTCAAAAC+TGG | - | chr4_3:65409324-65409343 | None:intergenic | 40.0% | |
| CTACTTACATGATTGCTCAC+CGG | - | chr4_3:65409353-65409372 | None:intergenic | 40.0% | |
| TCGTTCCACTTAGAAGGAAT+GGG | - | chr4_3:65409389-65409408 | None:intergenic | 40.0% | |
| ATCGTTCCACTTAGAAGGAA+TGG | - | chr4_3:65409390-65409409 | None:intergenic | 40.0% | |
| TGATCAAAATTACCGGACTC+TGG | - | chr4_3:65409512-65409531 | None:intergenic | 40.0% | |
| ! | TGCTTTAGCAAGAAGTGCAA+AGG | - | chr4_3:65409890-65409909 | None:intergenic | 40.0% |
| TCTAATGATGCAGCATTTCC+CGG | + | chr4_3:65409968-65409987 | Msa0656180:intron | 40.0% | |
| ATGGCAACAGATCTTATACC+GGG | - | chr4_3:65409989-65410008 | None:intergenic | 40.0% | |
| CATGGCAACAGATCTTATAC+CGG | - | chr4_3:65409990-65410009 | None:intergenic | 40.0% | |
| ATCTGTTGCCATGAGAGATA+TGG | + | chr4_3:65409997-65410016 | Msa0656180:CDS | 40.0% | |
| TCTGTTGCCATGAGAGATAT+GGG | + | chr4_3:65409998-65410017 | Msa0656180:CDS | 40.0% | |
| GAAAATGAATATTGCGGCGT+GGG | + | chr4_3:65410276-65410295 | Msa0656180:CDS | 40.0% | |
| GTTCTTTAGTATCTGTGTCG+CGG | - | chr4_3:65410339-65410358 | None:intergenic | 40.0% | |
| !! | TTGAAAAACGTGCTGCTTTG+TGG | + | chr4_3:65410374-65410393 | Msa0656180:CDS | 40.0% |
| !! | TGAAAAACGTGCTGCTTTGT+GGG | + | chr4_3:65410375-65410394 | Msa0656180:CDS | 40.0% |
| AACTTGCAGATTAAAGCGTG+AGG | + | chr4_3:65410501-65410520 | Msa0656180:intron | 40.0% | |
| TACCTCGGTTCTTCTCATTT+CGG | - | chr4_3:65410575-65410594 | None:intergenic | 40.0% | |
| ! | CTGCAAAAGTATGACTACCT+CGG | - | chr4_3:65410590-65410609 | None:intergenic | 40.0% |
| ! | GCACGAGTTGAAATTAGCTT+AGG | - | chr4_3:65410836-65410855 | None:intergenic | 40.0% |
| TGCTCTCATTTGCTCAACTT+TGG | - | chr4_3:65411055-65411074 | None:intergenic | 40.0% | |
| AGCACAGACACATGCAAAAA+TGG | + | chr4_3:65411071-65411090 | Msa0656180:CDS | 40.0% | |
| TGAAAAAGATTGCTATGGCG+AGG | + | chr4_3:65411094-65411113 | Msa0656180:CDS | 40.0% | |
| CAGAATACATACGCCAAACA+GGG | + | chr4_3:65411190-65411209 | Msa0656180:CDS | 40.0% | |
| !! | AATAGGGCATTTTCCCTGTT+TGG | - | chr4_3:65411206-65411225 | None:intergenic | 40.0% |
| GCCACAACACGTAATGTAAT+TGG | - | chr4_3:65411229-65411248 | None:intergenic | 40.0% | |
| ATTACATTACGTGTTGTGGC+TGG | + | chr4_3:65411229-65411248 | Msa0656180:CDS | 40.0% | |
| TCCCATAAGTATGGTGTAAG+AGG | + | chr4_3:65411533-65411552 | Msa0656180:three_prime_UTR | 40.0% | |
| GCCTCTTACACCATACTTAT+GGG | - | chr4_3:65411537-65411556 | None:intergenic | 40.0% | |
| AGCCTCTTACACCATACTTA+TGG | - | chr4_3:65411538-65411557 | None:intergenic | 40.0% | |
| GAGAGAGTTGGAGAAAGAAG+AGG | - | chr4_3:65407880-65407899 | None:intergenic | 45.0% | |
| GTGAGAGAAAGAGAGAGAGT+TGG | - | chr4_3:65407892-65407911 | None:intergenic | 45.0% | |
| !! | GAATGTTGGTAGCAAACCTG+AGG | - | chr4_3:65408105-65408124 | None:intergenic | 45.0% |
| GGATGAAGTTATTAGGGCCT+AGG | + | chr4_3:65408676-65408695 | Msa0656180:CDS | 45.0% | |
| GTTATTAGGGCCTAGGAAGA+AGG | + | chr4_3:65408683-65408702 | Msa0656180:CDS | 45.0% | |
| TTGGATCCATCCTTCTTCCT+AGG | - | chr4_3:65408696-65408715 | None:intergenic | 45.0% | |
| !! | CTTCTAGAACATCCCCTTCA+AGG | + | chr4_3:65408724-65408743 | Msa0656180:CDS | 45.0% |
| ACTAAAGGAAACAGTTCCCG+TGG | + | chr4_3:65409169-65409188 | Msa0656180:CDS | 45.0% | |
| GAAACAGTTCCCGTGGAAAA+TGG | + | chr4_3:65409176-65409195 | Msa0656180:CDS | 45.0% | |
| ! | TCCTGTGTCACCATTTTCCA+CGG | - | chr4_3:65409189-65409208 | None:intergenic | 45.0% |
| ! | CATTTTCATAAGGCTGACCC+TGG | + | chr4_3:65409224-65409243 | Msa0656180:CDS | 45.0% |
| GAATTGTGCTCGAACTTCCA+GGG | - | chr4_3:65409244-65409263 | None:intergenic | 45.0% | |
| TGAATTGTGCTCGAACTTCC+AGG | - | chr4_3:65409245-65409264 | None:intergenic | 45.0% | |
| TCATCTTCTGTTGTCCTCAC+CGG | - | chr4_3:65409269-65409288 | None:intergenic | 45.0% | |
| AGAAGGAATGGGTCTCAACA+GGG | - | chr4_3:65409378-65409397 | None:intergenic | 45.0% | |
| TAGAAGGAATGGGTCTCAAC+AGG | - | chr4_3:65409379-65409398 | None:intergenic | 45.0% | |
| TGAGACCCATTCCTTCTAAG+TGG | + | chr4_3:65409381-65409400 | Msa0656180:CDS | 45.0% | |
| TCAGCATCGTTCCACTTAGA+AGG | - | chr4_3:65409395-65409414 | None:intergenic | 45.0% | |
| AGTGGAACGATGCTGAGAAA+TGG | + | chr4_3:65409399-65409418 | Msa0656180:CDS | 45.0% | |
| AAATCGCCTGCCAACAAGTA+TGG | + | chr4_3:65409475-65409494 | Msa0656180:CDS | 45.0% | |
| ACAACCCTTGCCATACTTGT+TGG | - | chr4_3:65409488-65409507 | None:intergenic | 45.0% | |
| TTTCTGCAACCTTGCTTGTC+GGG | - | chr4_3:65409541-65409560 | None:intergenic | 45.0% | |
| GTTTCTGCAACCTTGCTTGT+CGG | - | chr4_3:65409542-65409561 | None:intergenic | 45.0% | |
| GCCGTATGTGAATGTGATGT+TGG | - | chr4_3:65409587-65409606 | None:intergenic | 45.0% | |
| TGTTCCATCCGATGCTCATT+CGG | + | chr4_3:65409625-65409644 | Msa0656180:CDS | 45.0% | |
| ACCAGAAACCGAATGAGCAT+CGG | - | chr4_3:65409636-65409655 | None:intergenic | 45.0% | |
| ACATGGAAAACCACCTGTAG+TGG | + | chr4_3:65409661-65409680 | Msa0656180:CDS | 45.0% | |
| GGAAAAGATTCCACTACAGG+TGG | - | chr4_3:65409674-65409693 | None:intergenic | 45.0% | |
| TGGGGAAAAGATTCCACTAC+AGG | - | chr4_3:65409677-65409696 | None:intergenic | 45.0% | |
| CTCAGTTCCCATATCTCTCA+TGG | - | chr4_3:65410008-65410027 | None:intergenic | 45.0% | |
| !! | AAGGTTCTTGACTTGGCAAC+GGG | - | chr4_3:65410036-65410055 | None:intergenic | 45.0% |
| !! | GAAGGTTCTTGACTTGGCAA+CGG | - | chr4_3:65410037-65410056 | None:intergenic | 45.0% |
| GATGAAATTGGGCTGCGAAT+TGG | - | chr4_3:65410091-65410110 | None:intergenic | 45.0% | |
| CATCAATGCCTTCAACTCCT+AGG | + | chr4_3:65410107-65410126 | Msa0656180:CDS | 45.0% | |
| TTTCCCAAGCTGCATACCAA+GGG | - | chr4_3:65410260-65410279 | None:intergenic | 45.0% | |
| ! | TTTTCCCAAGCTGCATACCA+AGG | - | chr4_3:65410261-65410280 | None:intergenic | 45.0% |
| GGAAAATGAATATTGCGGCG+TGG | + | chr4_3:65410275-65410294 | Msa0656180:CDS | 45.0% | |
| GCAGAATACATACGCCAAAC+AGG | + | chr4_3:65411189-65411208 | Msa0656180:CDS | 45.0% | |
| AGTATGGTGTAAGAGGCTGT+AGG | + | chr4_3:65411540-65411559 | Msa0656180:three_prime_UTR | 45.0% | |
| GTATGGTGTAAGAGGCTGTA+GGG | + | chr4_3:65411541-65411560 | Msa0656180:three_prime_UTR | 45.0% | |
| !! | TTGTTTGGTGCGCGGGAAAA+AGG | + | chr4_3:65408404-65408423 | Msa0656180:intron | 50.0% |
| TTAGGGCCTAGGAAGAAGGA+TGG | + | chr4_3:65408687-65408706 | Msa0656180:CDS | 50.0% | |
| AACATCCCCTTCAAGGCTTG+AGG | + | chr4_3:65408731-65408750 | Msa0656180:CDS | 50.0% | |
| AGGATCCTCAAGCCTTGAAG+GGG | - | chr4_3:65408739-65408758 | None:intergenic | 50.0% | |
| CAGGATCCTCAAGCCTTGAA+GGG | - | chr4_3:65408740-65408759 | None:intergenic | 50.0% | |
| TCAGGATCCTCAAGCCTTGA+AGG | - | chr4_3:65408741-65408760 | None:intergenic | 50.0% | |
| ATCAAGGTTGTCGTCGTTGG+AGG | - | chr4_3:65408784-65408803 | None:intergenic | 50.0% | |
| TCCAGTACCGCATCCCTAAA+TGG | - | chr4_3:65409143-65409162 | None:intergenic | 50.0% | |
| ! | GGTACTGGACCAGAGACTAA+AGG | + | chr4_3:65409154-65409173 | Msa0656180:CDS | 50.0% |
| ! | CCTGTGTCACCATTTTCCAC+GGG | - | chr4_3:65409188-65409207 | None:intergenic | 50.0% |
| GTTTGACAAAGGGGAGAGAC+CGG | + | chr4_3:65409331-65409350 | Msa0656180:CDS | 50.0% | |
| ! | TTGTTGGCAGGCGATTTGCT+TGG | - | chr4_3:65409472-65409491 | None:intergenic | 50.0% |
| CCTGCCAACAAGTATGGCAA+GGG | + | chr4_3:65409481-65409500 | Msa0656180:CDS | 50.0% | |
| TCATAAGCTCCCGACAAGCA+AGG | + | chr4_3:65409529-65409548 | Msa0656180:CDS | 50.0% | |
| !! | GAAACCGAATGAGCATCGGA+TGG | - | chr4_3:65409632-65409651 | None:intergenic | 50.0% |
| TCCGATGCTCATTCGGTTTC+TGG | + | chr4_3:65409632-65409651 | Msa0656180:CDS | 50.0% | |
| !! | TCGGTTTCTGGTCAAGCACA+TGG | + | chr4_3:65409644-65409663 | Msa0656180:CDS | 50.0% |
| !! | AGGTTCTTGACTTGGCAACG+GGG | - | chr4_3:65410035-65410054 | None:intergenic | 50.0% |
| GTCTGCGAAGGTTCTTGACT+TGG | - | chr4_3:65410043-65410062 | None:intergenic | 50.0% | |
| ! | GACAACCACTCCTGTTGGTT+CGG | + | chr4_3:65410060-65410079 | Msa0656180:CDS | 50.0% |
| ATTGGAGTTGCCGAACCAAC+AGG | - | chr4_3:65410073-65410092 | None:intergenic | 50.0% | |
| ATGCCTTCAACTCCTAGGAG+AGG | + | chr4_3:65410112-65410131 | Msa0656180:CDS | 50.0% | |
| TCGAAACTGTGGATCCTCGT+CGG | - | chr4_3:65410170-65410189 | None:intergenic | 50.0% | |
| !! | AAAACGTGCTGCTTTGTGGG+AGG | + | chr4_3:65410378-65410397 | Msa0656180:CDS | 50.0% |
| AGCATGGGAAAGTCAGCAGA+AGG | + | chr4_3:65410537-65410556 | Msa0656180:CDS | 50.0% | |
| AGCCGAAATGAGAAGAACCG+AGG | + | chr4_3:65410570-65410589 | Msa0656180:CDS | 50.0% | |
| TTCGACGACCCTATCCTTCA+AGG | - | chr4_3:65411321-65411340 | None:intergenic | 50.0% | |
| CATGTAAGCAACTTGCGCTC+AGG | - | chr4_3:65411389-65411408 | None:intergenic | 50.0% | |
| GCCATTTAGGGATGCGGTAC+TGG | + | chr4_3:65409139-65409158 | Msa0656180:CDS | 55.0% | |
| CCCGTGGAAAATGGTGACAC+AGG | + | chr4_3:65409185-65409204 | Msa0656180:CDS | 55.0% | |
| CGAGCACAATTCATCCGGTG+AGG | + | chr4_3:65409252-65409271 | Msa0656180:CDS | 55.0% | |
| GCCTGCCAACAAGTATGGCA+AGG | + | chr4_3:65409480-65409499 | Msa0656180:CDS | 55.0% | |
| ! | CCCTTGCCATACTTGTTGGC+AGG | - | chr4_3:65409484-65409503 | None:intergenic | 55.0% |
| GCAAGGGTTGTTCCAGAGTC+CGG | + | chr4_3:65409497-65409516 | Msa0656180:CDS | 55.0% | |
| ACAGGAGTGGTTGTCTGCGA+AGG | - | chr4_3:65410055-65410074 | None:intergenic | 55.0% | |
| TCGCAGACAACCACTCCTGT+TGG | + | chr4_3:65410055-65410074 | Msa0656180:CDS | 55.0% | |
| AGTTGCCGAACCAACAGGAG+TGG | - | chr4_3:65410068-65410087 | None:intergenic | 55.0% | |
| GCACCTCTCCTAGGAGTTGA+AGG | - | chr4_3:65410118-65410137 | None:intergenic | 55.0% | |
| ! | GTTGTGTAGCCCAAAGGCGT+AGG | - | chr4_3:65410148-65410167 | None:intergenic | 55.0% |
| ! | TCGTCGGTTGTGTAGCCCAA+AGG | - | chr4_3:65410154-65410173 | None:intergenic | 55.0% |
| TTTGGGCTACACAACCGACG+AGG | + | chr4_3:65410153-65410172 | Msa0656180:CDS | 55.0% | |
| AGGAGAGAGATTGCAGCCCT+TGG | + | chr4_3:65410241-65410260 | Msa0656180:CDS | 55.0% | |
| CAGCCCTTGGTATGCAGCTT+GGG | + | chr4_3:65410254-65410273 | Msa0656180:CDS | 55.0% | |
| TGCACCAGCTCCTACGCCTT+TGG | + | chr4_3:65410135-65410154 | Msa0656180:CDS | 60.0% | |
| GCACCAGCTCCTACGCCTTT+GGG | + | chr4_3:65410136-65410155 | Msa0656180:CDS | 60.0% | |
| ! | TAGCCCAAAGGCGTAGGAGC+TGG | - | chr4_3:65410142-65410161 | None:intergenic | 60.0% |
| GCAGCCCTTGGTATGCAGCT+TGG | + | chr4_3:65410253-65410272 | Msa0656180:CDS | 60.0% | |
| GGAGCTGGTGCACCTCTCCT+AGG | - | chr4_3:65410127-65410146 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65407826 | 65411589 | 65407826 | ID=Msa0656180;Name=Msa0656180 |
| chr4_3 | mRNA | 65407826 | 65411589 | 65407826 | ID=Msa0656180-mRNA-1;Parent=Msa0656180;Name=Msa0656180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=252|1|1|1|1|1|6|332|529 |
| chr4_3 | exon | 65407826 | 65408107 | 65407826 | ID=Msa0656180-mRNA-1:exon:18545;Parent=Msa0656180-mRNA-1 |
| chr4_3 | exon | 65408648 | 65408810 | 65408648 | ID=Msa0656180-mRNA-1:exon:18546;Parent=Msa0656180-mRNA-1 |
| chr4_3 | exon | 65409105 | 65409764 | 65409105 | ID=Msa0656180-mRNA-1:exon:18547;Parent=Msa0656180-mRNA-1 |
| chr4_3 | exon | 65409981 | 65410428 | 65409981 | ID=Msa0656180-mRNA-1:exon:18548;Parent=Msa0656180-mRNA-1 |
| chr4_3 | exon | 65410510 | 65410591 | 65410510 | ID=Msa0656180-mRNA-1:exon:18549;Parent=Msa0656180-mRNA-1 |
| chr4_3 | exon | 65411051 | 65411589 | 65411051 | ID=Msa0656180-mRNA-1:exon:18550;Parent=Msa0656180-mRNA-1 |
| chr4_3 | five_prime_UTR | 65407826 | 65408077 | 65407826 | ID=Msa0656180-mRNA-1:five_prime_utr;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65408078 | 65408107 | 65408078 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65408648 | 65408810 | 65408648 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65409105 | 65409764 | 65409105 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65409981 | 65410428 | 65409981 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65410510 | 65410591 | 65410510 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | CDS | 65411051 | 65411257 | 65411051 | ID=Msa0656180-mRNA-1:cds;Parent=Msa0656180-mRNA-1 |
| chr4_3 | three_prime_UTR | 65411258 | 65411589 | 65411258 | ID=Msa0656180-mRNA-1:three_prime_utr;Parent=Msa0656180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
