Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0657170 | AET04255.2 | 89.333 | 525 | 47 | 5 | 1 | 522 | 1 | 519 | 0.0 | 874 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0657170 | G7LJF0 | 89.333 | 525 | 47 | 5 | 1 | 522 | 1 | 519 | 0.0 | 874 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0657170 | Msa1083410 | 0.801794 | 7.610710e-49 | -8.615850e-47 |
Msa0657170 | Msa1414740 | 0.803294 | 3.733155e-49 | -8.615850e-47 |
Msa0165430 | Msa0657170 | 0.802639 | 5.100168e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0657170 | MtrunA17_Chr8g0379141 | 89.443 | 521 | 46 | 5 | 1 | 518 | 1 | 515 | 0.0 | 866 |
Msa0657170 | MtrunA17_Chr2g0283911 | 42.977 | 477 | 184 | 17 | 2 | 402 | 1 | 465 | 1.65e-82 | 272 |
Msa0657170 | MtrunA17_Chr2g0283911 | 51.351 | 111 | 41 | 3 | 403 | 513 | 568 | 665 | 1.65e-19 | 92.8 |
Msa0657170 | MtrunA17_Chr4g0041221 | 32.298 | 322 | 153 | 12 | 1 | 266 | 107 | 419 | 6.20e-28 | 119 |
Msa0657170 | MtrunA17_Chr2g0325871 | 31.930 | 285 | 154 | 12 | 1 | 266 | 6 | 269 | 1.50e-21 | 97.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0657170 | AT1G29240.1 | 28.693 | 589 | 314 | 22 | 2 | 513 | 1 | 560 | 3.82e-36 | 143 |
Msa0657170 | AT2G30990.3 | 30.851 | 282 | 158 | 11 | 1 | 265 | 7 | 268 | 1.06e-24 | 108 |
Msa0657170 | AT2G30990.4 | 29.316 | 307 | 160 | 11 | 1 | 265 | 7 | 298 | 8.11e-24 | 106 |
Msa0657170 | AT2G30990.1 | 29.316 | 307 | 160 | 11 | 1 | 265 | 7 | 298 | 8.11e-24 | 106 |
Msa0657170 | AT2G30990.5 | 29.316 | 307 | 160 | 11 | 1 | 265 | 7 | 298 | 8.11e-24 | 106 |
Msa0657170 | AT2G30990.2 | 29.316 | 307 | 160 | 11 | 1 | 265 | 7 | 298 | 8.11e-24 | 106 |
Msa0657170 | AT5G45850.1 | 26.750 | 557 | 233 | 23 | 2 | 513 | 1 | 427 | 1.44e-23 | 104 |
Msa0657170 | AT2G34170.4 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT2G34170.6 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT2G34170.2 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT2G34170.1 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT2G34170.5 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT2G34170.3 | 29.306 | 447 | 248 | 15 | 116 | 513 | 79 | 506 | 1.03e-14 | 77.4 |
Msa0657170 | AT4G18630.1 | 27.469 | 324 | 169 | 12 | 2 | 281 | 1 | 302 | 9.18e-13 | 71.2 |
Find 115 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGAATTTGAACTTCTTT+TGG | 0.115235 | 4_3:+66720472 | None:intergenic |
TTTCTTCTTCTTCCTCTTCT+TGG | 0.145703 | 4_3:+66721274 | None:intergenic |
AAATGAAAAGCTACAGAATT+TGG | 0.218935 | 4_3:-66721622 | Msa0657170:CDS |
TGTAAGCGGTTTGGATAATT+TGG | 0.219338 | 4_3:-66721526 | Msa0657170:CDS |
TTTCTTGCCTCATGCATATC+TGG | 0.234829 | 4_3:+66720713 | None:intergenic |
CACAATCACATGCTGTTAAA+AGG | 0.240194 | 4_3:-66720199 | Msa0657170:CDS |
AGGAACCTTTCAATGGAAAT+TGG | 0.242168 | 4_3:-66720452 | Msa0657170:CDS |
AGGAAGACCACATGGGAATT+TGG | 0.262676 | 4_3:+66721127 | None:intergenic |
GATGATCTTCAAGACCTTCT+TGG | 0.282619 | 4_3:-66718796 | Msa0657170:CDS |
TGTTGAAGACAGTGTTTCTA+AGG | 0.291639 | 4_3:+66721560 | None:intergenic |
ACAACAACCTAGCACCAAAT+TGG | 0.300860 | 4_3:-66721367 | Msa0657170:CDS |
AGGCTTGTGGGACTAAATAT+TGG | 0.310247 | 4_3:-66719920 | Msa0657170:CDS |
CGAAAACAGGTTCTGTTACT+TGG | 0.317824 | 4_3:+66721766 | None:intergenic |
TCAGGAGCTGCTGCTGCTGC+TGG | 0.322511 | 4_3:-66720608 | Msa0657170:CDS |
CAATTTAGCTCTTATAAATC+AGG | 0.324573 | 4_3:-66721075 | Msa0657170:intron |
TTTGTATCTTGTCACAGAAT+TGG | 0.338239 | 4_3:+66718674 | None:intergenic |
AACTTTCATGACCTTGGCTT+GGG | 0.359161 | 4_3:+66720519 | None:intergenic |
AGCGCGTGCTTGGTTGGGTG+GGG | 0.365811 | 4_3:-66718735 | Msa0657170:CDS |
CTATATTCTTTCAGGCTTGT+GGG | 0.366361 | 4_3:-66719932 | Msa0657170:intron |
TTGCTCCAAGATCCTTGTTA+TGG | 0.366393 | 4_3:-66718697 | Msa0657170:CDS |
CTAAATTGAGAACTTCTGTT+AGG | 0.367745 | 4_3:+66721090 | None:intergenic |
CCTATATTCTTTCAGGCTTG+TGG | 0.371093 | 4_3:-66719933 | Msa0657170:intron |
TGTTTCCCACTTGCTATAGC+TGG | 0.374061 | 4_3:+66720157 | None:intergenic |
GTTGCAAGGACATGGATTCT+TGG | 0.383545 | 4_3:+66720429 | None:intergenic |
ATCATTATGTGTAAGCGGTT+TGG | 0.386450 | 4_3:-66721535 | Msa0657170:CDS |
GACCTTCTTGGTAATGCTAA+TGG | 0.391443 | 4_3:-66718784 | Msa0657170:CDS |
TCGAGGTAGGCCTCAATCTC+AGG | 0.393361 | 4_3:-66720573 | Msa0657170:CDS |
TGTTGGAGCGCGTGCTTGGT+TGG | 0.402308 | 4_3:-66718741 | Msa0657170:CDS |
CTCAAGAATTCATGATGAAC+CGG | 0.406764 | 4_3:-66721461 | Msa0657170:CDS |
ATCTCTTCATTTCGTCGGTC+AGG | 0.413475 | 4_3:-66720626 | Msa0657170:CDS |
AGAATCTTTCCTGCAGGCTT+GGG | 0.415710 | 4_3:-66720777 | Msa0657170:CDS |
GAGCGCGTGCTTGGTTGGGT+GGG | 0.420886 | 4_3:-66718736 | Msa0657170:CDS |
AAGAATCTTTCCTGCAGGCT+TGG | 0.423897 | 4_3:-66720778 | Msa0657170:CDS |
AAATTCAAGGAACCTTTCAA+TGG | 0.425265 | 4_3:-66720459 | Msa0657170:CDS |
AATATTTCAGCTAAGGGTTG+TGG | 0.425504 | 4_3:-66721222 | Msa0657170:CDS |
TCCTTTGAGGATTGTAGTGT+TGG | 0.426435 | 4_3:-66718758 | Msa0657170:CDS |
GTCATGTCTGATTTGTTGTA+TGG | 0.430427 | 4_3:+66721795 | None:intergenic |
CTTGAAAACTTTCATGACCT+TGG | 0.430428 | 4_3:+66720513 | None:intergenic |
GTTGTAGTTGATGATGGTTT+AGG | 0.433631 | 4_3:-66720353 | Msa0657170:CDS |
CAAGATACAAAATCAGGATA+TGG | 0.442865 | 4_3:-66718662 | Msa0657170:CDS |
ATGCTAATGGTAATCCTTTG+AGG | 0.451428 | 4_3:-66718771 | Msa0657170:CDS |
CTAAACTTGATAACAAGGTT+AGG | 0.452875 | 4_3:-66721710 | Msa0657170:CDS |
TCTTGGTATTGACACGTGTA+TGG | 0.453421 | 4_3:+66721291 | None:intergenic |
ATTGGCCATAACAAGGATCT+TGG | 0.456811 | 4_3:+66718692 | None:intergenic |
AAACTTTCATGACCTTGGCT+TGG | 0.457228 | 4_3:+66720518 | None:intergenic |
CCAAAAGAAGTTCAAATTCA+AGG | 0.459922 | 4_3:-66720472 | Msa0657170:CDS |
CTTGGCCAATTTCCATTGAA+AGG | 0.462261 | 4_3:+66720447 | None:intergenic |
CTGTGACAAGATACAAAATC+AGG | 0.462389 | 4_3:-66718668 | Msa0657170:CDS |
TCACTAACCAATTTGGTGCT+AGG | 0.464499 | 4_3:+66721360 | None:intergenic |
GTTGGAGCGCGTGCTTGGTT+GGG | 0.468309 | 4_3:-66718740 | Msa0657170:CDS |
GAAGGTGACTTTGGCAGTGG+TGG | 0.472083 | 4_3:+66720293 | None:intergenic |
GTAGTGTTGGAGCGCGTGCT+TGG | 0.475481 | 4_3:-66718745 | Msa0657170:CDS |
CAAGTAAGAATCTTTCCTGC+AGG | 0.477301 | 4_3:-66720783 | Msa0657170:intron |
TTGCACAAGTTGCAAGGACA+TGG | 0.478353 | 4_3:+66720421 | None:intergenic |
CATAAAAGCAAATCAAGCTC+TGG | 0.478579 | 4_3:-66720746 | Msa0657170:CDS |
CAAATTGTTGTAGTTGATGA+TGG | 0.479110 | 4_3:-66720359 | Msa0657170:CDS |
CAATTGAAAGACACGAAAAC+AGG | 0.484249 | 4_3:+66721753 | None:intergenic |
TTGGCAGTGGTGGGGAAAGA+AGG | 0.486436 | 4_3:+66720303 | None:intergenic |
GGAGCGCGTGCTTGGTTGGG+TGG | 0.486901 | 4_3:-66718737 | Msa0657170:CDS |
TTATTCTCGGCCTGAGATTG+AGG | 0.486901 | 4_3:+66720563 | None:intergenic |
GCGCGTGCTTGGTTGGGTGG+GGG | 0.488762 | 4_3:-66718734 | Msa0657170:CDS |
GAGCGTCTCACAGACATAAG+AGG | 0.491919 | 4_3:+66721885 | None:intergenic |
TATGCAAATATTTCAGCTAA+GGG | 0.492036 | 4_3:-66721228 | Msa0657170:CDS |
TTTGCTTCAGTTGAAGATGT+TGG | 0.500023 | 4_3:+66721852 | None:intergenic |
TACCATTAGCATTACCAAGA+AGG | 0.500761 | 4_3:+66718782 | None:intergenic |
TTATGCAAATATTTCAGCTA+AGG | 0.504055 | 4_3:-66721229 | Msa0657170:CDS |
TTCAATTGGGAGCATATCGC+TGG | 0.504308 | 4_3:-66721738 | Msa0657170:CDS |
GTGAACTTAGTCAGATAAGT+AGG | 0.505305 | 4_3:-66720649 | Msa0657170:CDS |
CACGACTCAGAAGGTGACTT+TGG | 0.507091 | 4_3:+66720284 | None:intergenic |
TAGTTATCGATGTGGGACTT+AGG | 0.510078 | 4_3:+66718612 | None:intergenic |
AAAGTCATAGCCTTTGCTGC+AGG | 0.531670 | 4_3:+66721432 | None:intergenic |
AAGGTGACTTTGGCAGTGGT+GGG | 0.542375 | 4_3:+66720294 | None:intergenic |
TAAAGAATTCGATTTACTTG+AGG | 0.545338 | 4_3:+66721686 | None:intergenic |
TCACATGCTGTTAAAAGGAT+AGG | 0.546488 | 4_3:-66720194 | Msa0657170:CDS |
TAGGGAGGAGAACGTAAGAA+AGG | 0.547308 | 4_3:+66718487 | None:intergenic |
TGGAACATAATGATGAATGA+AGG | 0.554781 | 4_3:-66721927 | None:intergenic |
GAATTCTTAATGCATGAACT+AGG | 0.555451 | 4_3:+66721192 | None:intergenic |
GAGCATCCAGCTATAGCAAG+TGG | 0.557921 | 4_3:-66720163 | Msa0657170:CDS |
GTAGGATCTCTTCATTTCGT+CGG | 0.565108 | 4_3:-66720631 | Msa0657170:CDS |
TGATTCTTCAAAGAAACTAA+AGG | 0.565821 | 4_3:+66720245 | None:intergenic |
AAAGCTACAGAATTTGGAAG+AGG | 0.565842 | 4_3:-66721616 | Msa0657170:CDS |
GAATAGCATCCCAAGCCTGC+AGG | 0.566153 | 4_3:+66720768 | None:intergenic |
TGAGCTTTGCACAAGTTGCA+AGG | 0.572711 | 4_3:+66720415 | None:intergenic |
ACAGAATCATTATGTGTAAG+CGG | 0.580192 | 4_3:-66721540 | Msa0657170:CDS |
CAAAGTCACCTTCTGAGTCG+TGG | 0.581092 | 4_3:-66720283 | Msa0657170:CDS |
ATCGATAACTATGATAACTA+CGG | 0.583059 | 4_3:-66718600 | Msa0657170:three_prime_UTR |
TCAGAAGGTGACTTTGGCAG+TGG | 0.585919 | 4_3:+66720290 | None:intergenic |
AAGAGGTATAATGCTTACTC+TGG | 0.589912 | 4_3:-66720671 | Msa0657170:CDS |
GTTATCATAGTTATCGATGT+GGG | 0.590069 | 4_3:+66718605 | None:intergenic |
CATTGGATTTAATAAACACA+AGG | 0.593023 | 4_3:+66721170 | None:intergenic |
CTCATGCATATCTGGTGATG+AGG | 0.593781 | 4_3:+66720721 | None:intergenic |
TTTCAAGAGGCACAGTCACA+AGG | 0.597869 | 4_3:-66720497 | Msa0657170:CDS |
GGAACATAATGATGAATGAA+GGG | 0.600386 | 4_3:-66721926 | None:intergenic |
TTTCTTGGAGCATGTTGATG+AGG | 0.603285 | 4_3:+66721405 | None:intergenic |
TAGCACCAAATTGGTTAGTG+AGG | 0.603329 | 4_3:-66721358 | Msa0657170:CDS |
CACGTGTCAATACCAAGAAG+AGG | 0.603427 | 4_3:-66721286 | Msa0657170:CDS |
CGACAAAGCCACGACTCAGA+AGG | 0.606984 | 4_3:+66720275 | None:intergenic |
AAGCTACAGAATTTGGAAGA+GGG | 0.613004 | 4_3:-66721615 | Msa0657170:CDS |
TCACAGAATTGGCCATAACA+AGG | 0.619953 | 4_3:+66718685 | None:intergenic |
AAATTGAAATTCCCAAGCCA+AGG | 0.620852 | 4_3:-66720530 | Msa0657170:CDS |
TAGATCTAAACTTGATAACA+AGG | 0.623066 | 4_3:-66721715 | Msa0657170:CDS |
TGTTCCTCGACTCGAATACA+CGG | 0.631344 | 4_3:+66720220 | None:intergenic |
AAACTCATAGGAAGACCACA+TGG | 0.646908 | 4_3:+66721119 | None:intergenic |
TCCAACACTACAATCCTCAA+AGG | 0.654004 | 4_3:+66718757 | None:intergenic |
AGGTGACTTTGGCAGTGGTG+GGG | 0.655340 | 4_3:+66720295 | None:intergenic |
AATAAAGTAGATCATGACAA+AGG | 0.655952 | 4_3:-66721651 | Msa0657170:CDS |
AGCATCCAGCTATAGCAAGT+GGG | 0.660589 | 4_3:-66720162 | Msa0657170:CDS |
AATGGACGAGTGAATCGAAG+AGG | 0.661083 | 4_3:-66720688 | Msa0657170:CDS |
GTGCAAAGCTCATTTGACAA+AGG | 0.661335 | 4_3:-66720404 | Msa0657170:CDS |
CAGTCCGTGTATTCGAGTCG+AGG | 0.663096 | 4_3:-66720224 | Msa0657170:CDS |
AGTTATCATAGTTATCGATG+TGG | 0.666274 | 4_3:+66718604 | None:intergenic |
CTCATCACCAGATATGCATG+AGG | 0.681013 | 4_3:-66720720 | Msa0657170:CDS |
AACTCATAGGAAGACCACAT+GGG | 0.698773 | 4_3:+66721120 | None:intergenic |
ACACGTGTATGGTACAATGT+CGG | 0.716795 | 4_3:+66721302 | None:intergenic |
TGGAGAACCAAATTCCCATG+TGG | 0.730190 | 4_3:-66721134 | Msa0657170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATTATTTACAAAATG+AGG | + | chr4_3:66719592-66719611 | None:intergenic | 10.0% |
!!! | CAAAGATATAAATTTTTAAC+TGG | - | chr4_3:66720368-66720387 | Msa0657170:CDS | 15.0% |
!! | ATATATAGGTTACTTAAATA+TGG | + | chr4_3:66721070-66721089 | None:intergenic | 15.0% |
!! | AAAAAATTATTTACTCTACT+AGG | + | chr4_3:66721888-66721907 | None:intergenic | 15.0% |
!!! | TTTTCTAATTTGGTTATTCT+CGG | + | chr4_3:66719864-66719883 | None:intergenic | 20.0% |
!!! | GGAATTTCAATTTTCTAATT+TGG | + | chr4_3:66719874-66719893 | None:intergenic | 20.0% |
!! | AACATAAAATATTAGCTCAA+TGG | + | chr4_3:66720342-66720361 | None:intergenic | 20.0% |
!! | TATATTTCCTATATTCTTTC+AGG | - | chr4_3:66720471-66720490 | Msa0657170:CDS | 20.0% |
!!! | ATTAGTTTATATGTACTTCT+GGG | + | chr4_3:66720786-66720805 | None:intergenic | 20.0% |
!! | ATTTATGAAATTGCAAGAAA+AGG | + | chr4_3:66720911-66720930 | None:intergenic | 20.0% |
!!! | ATTGATCTGATTTTCATATT+TGG | + | chr4_3:66720939-66720958 | None:intergenic | 20.0% |
!! | TTACCATTTAAATAAACTTG+TGG | - | chr4_3:66721384-66721403 | Msa0657170:CDS | 20.0% |
!!! | ATTTTAATCGCTTGTTTAAA+TGG | + | chr4_3:66721415-66721434 | None:intergenic | 20.0% |
!!! | TAATATTTGAGATTTCATCA+AGG | - | chr4_3:66721471-66721490 | Msa0657170:CDS | 20.0% |
!! | TAGATCTAAACTTGATAACA+AGG | - | chr4_3:66718696-66718715 | Msa0657170:CDS | 25.0% |
! | TAAAGAATTCGATTTACTTG+AGG | + | chr4_3:66718728-66718747 | None:intergenic | 25.0% |
! | AATAAAGTAGATCATGACAA+AGG | - | chr4_3:66718760-66718779 | Msa0657170:CDS | 25.0% |
! | AAATGAAAAGCTACAGAATT+TGG | - | chr4_3:66718789-66718808 | Msa0657170:CDS | 25.0% |
! | TTATGCAAATATTTCAGCTA+AGG | - | chr4_3:66719182-66719201 | Msa0657170:intron | 25.0% |
! | TATGCAAATATTTCAGCTAA+GGG | - | chr4_3:66719183-66719202 | Msa0657170:intron | 25.0% |
! | CATTGGATTTAATAAACACA+AGG | + | chr4_3:66719244-66719263 | None:intergenic | 25.0% |
!!! | CAATTTAGCTCTTATAAATC+AGG | - | chr4_3:66719336-66719355 | Msa0657170:intron | 25.0% |
! | AAATTGCTATCTTGATTGAA+CGG | - | chr4_3:66719528-66719547 | Msa0657170:intron | 25.0% |
! | TTATTTACAAAATGAGGTCA+AGG | + | chr4_3:66719586-66719605 | None:intergenic | 25.0% |
! | TGATTCTTCAAAGAAACTAA+AGG | + | chr4_3:66720169-66720188 | None:intergenic | 25.0% |
!! | TGATCATGATTTTTGTTCTA+AGG | - | chr4_3:66720303-66720322 | Msa0657170:CDS | 25.0% |
!!! | TTTGTTTTGCATGATATCAT+AGG | - | chr4_3:66720514-66720533 | Msa0657170:CDS | 25.0% |
! | ATAGGTAACTAAATTTCTCA+TGG | - | chr4_3:66720532-66720551 | Msa0657170:CDS | 25.0% |
! | GACAACAAATGTAAACATAA+TGG | + | chr4_3:66720599-66720618 | None:intergenic | 25.0% |
! | ATGTATCAAGAAAAATGCAA+TGG | + | chr4_3:66720652-66720671 | None:intergenic | 25.0% |
! | AGAAGAATACATATCCTAAT+TGG | - | chr4_3:66720685-66720704 | Msa0657170:CDS | 25.0% |
!! | GTTTTTATTGATCACCAATT+AGG | + | chr4_3:66720702-66720721 | None:intergenic | 25.0% |
!! | AAAACAAACAAAGCTTCTTT+TGG | - | chr4_3:66720717-66720736 | Msa0657170:CDS | 25.0% |
!! | TGAAATTTTGAATCCATTGA+AGG | + | chr4_3:66720753-66720772 | None:intergenic | 25.0% |
! | TTAGTTTATATGTACTTCTG+GGG | + | chr4_3:66720785-66720804 | None:intergenic | 25.0% |
!! | CATTAGTTTATATGTACTTC+TGG | + | chr4_3:66720787-66720806 | None:intergenic | 25.0% |
! | GATTAATCTACAGCATATAT+AGG | + | chr4_3:66721084-66721103 | None:intergenic | 25.0% |
!! | CTTTTTAAATGCCATGAAAT+AGG | - | chr4_3:66721103-66721122 | Msa0657170:CDS | 25.0% |
!! | TGTTAGTATCATGTTGATAA+TGG | + | chr4_3:66721199-66721218 | None:intergenic | 25.0% |
!! | GGTTATGAAGTTTCTTTTAA+CGG | + | chr4_3:66721235-66721254 | None:intergenic | 25.0% |
!!! | AGAATAAATTTGCTAGAGTA+TGG | + | chr4_3:66721256-66721275 | None:intergenic | 25.0% |
!! | TTTAAATGGTAATGCAACAA+TGG | + | chr4_3:66721376-66721395 | None:intergenic | 25.0% |
! | ATGCCACAAGTTTATTTAAA+TGG | + | chr4_3:66721390-66721409 | None:intergenic | 25.0% |
! | ATCGATAACTATGATAACTA+CGG | - | chr4_3:66721811-66721830 | Msa0657170:CDS | 25.0% |
! | TGTTTTCGTGTCTTTCAATT+GGG | - | chr4_3:66718660-66718679 | Msa0657170:CDS | 30.0% |
! | CTAAACTTGATAACAAGGTT+AGG | - | chr4_3:66718701-66718720 | Msa0657170:CDS | 30.0% |
ACAGAATCATTATGTGTAAG+CGG | - | chr4_3:66718871-66718890 | Msa0657170:intron | 30.0% | |
! | AACAGAACAGATTGTTTTCT+TGG | + | chr4_3:66719024-66719043 | None:intergenic | 30.0% |
GAATTCTTAATGCATGAACT+AGG | + | chr4_3:66719222-66719241 | None:intergenic | 30.0% | |
CTAAATTGAGAACTTCTGTT+AGG | + | chr4_3:66719324-66719343 | None:intergenic | 30.0% | |
ATAGAAAACTCAGACTAACA+TGG | + | chr4_3:66719385-66719404 | None:intergenic | 30.0% | |
! | CCTTGAATTTGAACTTCTTT+TGG | + | chr4_3:66719942-66719961 | None:intergenic | 30.0% |
CCAAAAGAAGTTCAAATTCA+AGG | - | chr4_3:66719939-66719958 | Msa0657170:intron | 30.0% | |
AAATTCAAGGAACCTTTCAA+TGG | - | chr4_3:66719952-66719971 | Msa0657170:intron | 30.0% | |
!! | CAAATTGTTGTAGTTGATGA+TGG | - | chr4_3:66720052-66720071 | Msa0657170:intron | 30.0% |
ATTAGCTCAATGGATAAATG+AGG | + | chr4_3:66720332-66720351 | None:intergenic | 30.0% | |
TGGCAATTAACTTTCATTAC+AGG | - | chr4_3:66720388-66720407 | Msa0657170:CDS | 30.0% | |
TGAATGCTGAGGTTTATATA+AGG | + | chr4_3:66720420-66720439 | None:intergenic | 30.0% | |
AGCATTCAAAATCTTAGAGA+TGG | - | chr4_3:66720432-66720451 | Msa0657170:CDS | 30.0% | |
TATGAAATTGCAAGAAAAGG+CGG | + | chr4_3:66720908-66720927 | None:intergenic | 30.0% | |
ACTAGCAAATTTCAGTGTTT+AGG | - | chr4_3:66721152-66721171 | Msa0657170:CDS | 30.0% | |
!! | ATATCAGTTCAATGGATTAC+CGG | + | chr4_3:66721554-66721573 | None:intergenic | 30.0% |
ATATGAGCATATCAGTTCAA+TGG | + | chr4_3:66721562-66721581 | None:intergenic | 30.0% | |
TTTGTATCTTGTCACAGAAT+TGG | + | chr4_3:66721740-66721759 | None:intergenic | 30.0% | |
CAAGATACAAAATCAGGATA+TGG | - | chr4_3:66721749-66721768 | Msa0657170:CDS | 30.0% | |
GTTATCATAGTTATCGATGT+GGG | + | chr4_3:66721809-66721828 | None:intergenic | 30.0% | |
AGTTATCATAGTTATCGATG+TGG | + | chr4_3:66721810-66721829 | None:intergenic | 30.0% | |
TTTGCTTCAGTTGAAGATGT+TGG | + | chr4_3:66718562-66718581 | None:intergenic | 35.0% | |
!! | GTCATGTCTGATTTGTTGTA+TGG | + | chr4_3:66718619-66718638 | None:intergenic | 35.0% |
CAATTGAAAGACACGAAAAC+AGG | + | chr4_3:66718661-66718680 | None:intergenic | 35.0% | |
! | CTGTTTTCGTGTCTTTCAAT+TGG | - | chr4_3:66718659-66718678 | Msa0657170:CDS | 35.0% |
AAAGCTACAGAATTTGGAAG+AGG | - | chr4_3:66718795-66718814 | Msa0657170:CDS | 35.0% | |
AAGCTACAGAATTTGGAAGA+GGG | - | chr4_3:66718796-66718815 | Msa0657170:CDS | 35.0% | |
! | TGTTGAAGACAGTGTTTCTA+AGG | + | chr4_3:66718854-66718873 | None:intergenic | 35.0% |
ATCATTATGTGTAAGCGGTT+TGG | - | chr4_3:66718876-66718895 | Msa0657170:intron | 35.0% | |
! | TGTAAGCGGTTTGGATAATT+TGG | - | chr4_3:66718885-66718904 | Msa0657170:intron | 35.0% |
CTCAAGAATTCATGATGAAC+CGG | - | chr4_3:66718950-66718969 | Msa0657170:intron | 35.0% | |
! | CTTTTCCTCACTAACCAATT+TGG | + | chr4_3:66719061-66719080 | None:intergenic | 35.0% |
TTTCTTCTTCTTCCTCTTCT+TGG | + | chr4_3:66719140-66719159 | None:intergenic | 35.0% | |
AATATTTCAGCTAAGGGTTG+TGG | - | chr4_3:66719189-66719208 | Msa0657170:intron | 35.0% | |
! | GTTAGGCTTTTCAAACTCAT+AGG | + | chr4_3:66719307-66719326 | None:intergenic | 35.0% |
GTTCTTACCTTCTTTATGGA+TGG | + | chr4_3:66719363-66719382 | None:intergenic | 35.0% | |
CATGGTTCTTACCTTCTTTA+TGG | + | chr4_3:66719367-66719386 | None:intergenic | 35.0% | |
! | ATGCACTATCGACTATTGAA+AGG | + | chr4_3:66719561-66719580 | None:intergenic | 35.0% |
CATAAAAGCAAATCAAGCTC+TGG | - | chr4_3:66719665-66719684 | Msa0657170:intron | 35.0% | |
TGCATGAGGCAAGAAAAAAA+TGG | - | chr4_3:66719705-66719724 | Msa0657170:intron | 35.0% | |
! | AAGAGGTATAATGCTTACTC+TGG | - | chr4_3:66719740-66719759 | Msa0657170:intron | 35.0% |
GTGAACTTAGTCAGATAAGT+AGG | - | chr4_3:66719762-66719781 | Msa0657170:intron | 35.0% | |
AAATTGAAATTCCCAAGCCA+AGG | - | chr4_3:66719881-66719900 | Msa0657170:intron | 35.0% | |
CTTGAAAACTTTCATGACCT+TGG | + | chr4_3:66719901-66719920 | None:intergenic | 35.0% | |
!! | AGGTCATGAAAGTTTTCAAG+AGG | - | chr4_3:66719901-66719920 | Msa0657170:CDS | 35.0% |
AGGAACCTTTCAATGGAAAT+TGG | - | chr4_3:66719959-66719978 | Msa0657170:intron | 35.0% | |
!! | GTTGTAGTTGATGATGGTTT+AGG | - | chr4_3:66720058-66720077 | Msa0657170:intron | 35.0% |
CACAATCACATGCTGTTAAA+AGG | - | chr4_3:66720212-66720231 | Msa0657170:CDS | 35.0% | |
TCACATGCTGTTAAAAGGAT+AGG | - | chr4_3:66720217-66720236 | Msa0657170:CDS | 35.0% | |
!!! | CTCTAAGATTTTGAATGCTG+AGG | + | chr4_3:66720431-66720450 | None:intergenic | 35.0% |
AAATCTTAGAGATGGAACTC+TGG | - | chr4_3:66720440-66720459 | Msa0657170:CDS | 35.0% | |
CTATATTCTTTCAGGCTTGT+GGG | - | chr4_3:66720479-66720498 | Msa0657170:CDS | 35.0% | |
TGGACTAATGATACCTTCAA+TGG | - | chr4_3:66720737-66720756 | Msa0657170:CDS | 35.0% | |
GTTGCATACTTCCTATTTCA+TGG | + | chr4_3:66721117-66721136 | None:intergenic | 35.0% | |
AGCAAATTTCAGTGTTTAGG+AGG | - | chr4_3:66721155-66721174 | Msa0657170:CDS | 35.0% | |
GCAAATTTCAGTGTTTAGGA+GGG | - | chr4_3:66721156-66721175 | Msa0657170:CDS | 35.0% | |
CAAGGTAATCAAAATCAGAC+TGG | - | chr4_3:66721489-66721508 | Msa0657170:CDS | 35.0% | |
TACCATTAGCATTACCAAGA+AGG | + | chr4_3:66721632-66721651 | None:intergenic | 35.0% | |
ATGCTAATGGTAATCCTTTG+AGG | - | chr4_3:66721640-66721659 | Msa0657170:CDS | 35.0% | |
CTGTGACAAGATACAAAATC+AGG | - | chr4_3:66721743-66721762 | Msa0657170:CDS | 35.0% | |
CGAAAACAGGTTCTGTTACT+TGG | + | chr4_3:66718648-66718667 | None:intergenic | 40.0% | |
TTTCTTGGAGCATGTTGATG+AGG | + | chr4_3:66719009-66719028 | None:intergenic | 40.0% | |
ACAACAACCTAGCACCAAAT+TGG | - | chr4_3:66719044-66719063 | Msa0657170:intron | 40.0% | |
!! | TCACTAACCAATTTGGTGCT+AGG | + | chr4_3:66719054-66719073 | None:intergenic | 40.0% |
TAGCACCAAATTGGTTAGTG+AGG | - | chr4_3:66719053-66719072 | Msa0657170:intron | 40.0% | |
ACACGTGTATGGTACAATGT+CGG | + | chr4_3:66719112-66719131 | None:intergenic | 40.0% | |
!! | TCTTGGTATTGACACGTGTA+TGG | + | chr4_3:66719123-66719142 | None:intergenic | 40.0% |
TCCAATGCCTGACACAAAAA+TGG | - | chr4_3:66719257-66719276 | Msa0657170:intron | 40.0% | |
!! | TCCATTTTTGTGTCAGGCAT+TGG | + | chr4_3:66719261-66719280 | None:intergenic | 40.0% |
!! | TGGTTCTCCATTTTTGTGTC+AGG | + | chr4_3:66719267-66719286 | None:intergenic | 40.0% |
AACTCATAGGAAGACCACAT+GGG | + | chr4_3:66719294-66719313 | None:intergenic | 40.0% | |
AAACTCATAGGAAGACCACA+TGG | + | chr4_3:66719295-66719314 | None:intergenic | 40.0% | |
ATCAGGTCCATCCATAAAGA+AGG | - | chr4_3:66719353-66719372 | Msa0657170:intron | 40.0% | |
CACTCAGTGTTGTCAAATAG+CGG | - | chr4_3:66719421-66719440 | Msa0657170:intron | 40.0% | |
CAAGTAAGAATCTTTCCTGC+AGG | - | chr4_3:66719628-66719647 | Msa0657170:intron | 40.0% | |
TTTCTTGCCTCATGCATATC+TGG | + | chr4_3:66719701-66719720 | None:intergenic | 40.0% | |
GTAGGATCTCTTCATTTCGT+CGG | - | chr4_3:66719780-66719799 | Msa0657170:intron | 40.0% | |
AACTTTCATGACCTTGGCTT+GGG | + | chr4_3:66719895-66719914 | None:intergenic | 40.0% | |
AAACTTTCATGACCTTGGCT+TGG | + | chr4_3:66719896-66719915 | None:intergenic | 40.0% | |
CTTGGCCAATTTCCATTGAA+AGG | + | chr4_3:66719967-66719986 | None:intergenic | 40.0% | |
GTGCAAAGCTCATTTGACAA+AGG | - | chr4_3:66720007-66720026 | Msa0657170:intron | 40.0% | |
CCACAAGCCTGAAAGAATAT+AGG | + | chr4_3:66720481-66720500 | None:intergenic | 40.0% | |
CCTATATTCTTTCAGGCTTG+TGG | - | chr4_3:66720478-66720497 | Msa0657170:CDS | 40.0% | |
AGGCTTGTGGGACTAAATAT+TGG | - | chr4_3:66720491-66720510 | Msa0657170:CDS | 40.0% | |
TCTTAAAATTGAGCCCTGAC+AGG | - | chr4_3:66720620-66720639 | Msa0657170:CDS | 40.0% | |
TGCTAGTGACAACTTGAAGT+AGG | + | chr4_3:66721139-66721158 | None:intergenic | 40.0% | |
TCTTCTCGTATAAGACCAGT+TGG | + | chr4_3:66721315-66721334 | None:intergenic | 40.0% | |
!! | CTGGTCTTATACGAGAAGAA+TGG | - | chr4_3:66721316-66721335 | Msa0657170:CDS | 40.0% |
! | TGAACCAACCAGTTCAAGTT+CGG | - | chr4_3:66721516-66721535 | Msa0657170:CDS | 40.0% |
GATGATCTTCAAGACCTTCT+TGG | - | chr4_3:66721615-66721634 | Msa0657170:CDS | 40.0% | |
!! | GACCTTCTTGGTAATGCTAA+TGG | - | chr4_3:66721627-66721646 | Msa0657170:CDS | 40.0% |
! | TCCTTTGAGGATTGTAGTGT+TGG | - | chr4_3:66721653-66721672 | Msa0657170:CDS | 40.0% |
TCCAACACTACAATCCTCAA+AGG | + | chr4_3:66721657-66721676 | None:intergenic | 40.0% | |
TTGCTCCAAGATCCTTGTTA+TGG | - | chr4_3:66721714-66721733 | Msa0657170:CDS | 40.0% | |
ATTGGCCATAACAAGGATCT+TGG | + | chr4_3:66721722-66721741 | None:intergenic | 40.0% | |
TCACAGAATTGGCCATAACA+AGG | + | chr4_3:66721729-66721748 | None:intergenic | 40.0% | |
TAGTTATCGATGTGGGACTT+AGG | + | chr4_3:66721802-66721821 | None:intergenic | 40.0% | |
! | TTCAATTGGGAGCATATCGC+TGG | - | chr4_3:66718673-66718692 | Msa0657170:CDS | 45.0% |
CCTTTGCTGCAGGTAAAAAC+CGG | + | chr4_3:66718972-66718991 | None:intergenic | 45.0% | |
AAAGTCATAGCCTTTGCTGC+AGG | + | chr4_3:66718982-66719001 | None:intergenic | 45.0% | |
CACGTGTCAATACCAAGAAG+AGG | - | chr4_3:66719125-66719144 | Msa0657170:intron | 45.0% | |
TGGAGAACCAAATTCCCATG+TGG | - | chr4_3:66719277-66719296 | Msa0657170:intron | 45.0% | |
AGGAAGACCACATGGGAATT+TGG | + | chr4_3:66719287-66719306 | None:intergenic | 45.0% | |
AAGAATCTTTCCTGCAGGCT+TGG | - | chr4_3:66719633-66719652 | Msa0657170:intron | 45.0% | |
AGAATCTTTCCTGCAGGCTT+GGG | - | chr4_3:66719634-66719653 | Msa0657170:intron | 45.0% | |
! | CTCATGCATATCTGGTGATG+AGG | + | chr4_3:66719693-66719712 | None:intergenic | 45.0% |
CTCATCACCAGATATGCATG+AGG | - | chr4_3:66719691-66719710 | Msa0657170:intron | 45.0% | |
AATGGACGAGTGAATCGAAG+AGG | - | chr4_3:66719723-66719742 | Msa0657170:intron | 45.0% | |
ATCTCTTCATTTCGTCGGTC+AGG | - | chr4_3:66719785-66719804 | Msa0657170:intron | 45.0% | |
!! | GCGTATCTTCTTTTCGAGGT+AGG | - | chr4_3:66719825-66719844 | Msa0657170:intron | 45.0% |
TTATTCTCGGCCTGAGATTG+AGG | + | chr4_3:66719851-66719870 | None:intergenic | 45.0% | |
! | TTTCAAGAGGCACAGTCACA+AGG | - | chr4_3:66719914-66719933 | Msa0657170:CDS | 45.0% |
GTTGCAAGGACATGGATTCT+TGG | + | chr4_3:66719985-66720004 | None:intergenic | 45.0% | |
TTGCACAAGTTGCAAGGACA+TGG | + | chr4_3:66719993-66720012 | None:intergenic | 45.0% | |
TGAGCTTTGCACAAGTTGCA+AGG | + | chr4_3:66719999-66720018 | None:intergenic | 45.0% | |
! | TGTTCCTCGACTCGAATACA+CGG | + | chr4_3:66720194-66720213 | None:intergenic | 45.0% |
AGCATCCAGCTATAGCAAGT+GGG | - | chr4_3:66720249-66720268 | Msa0657170:CDS | 45.0% | |
!! | TGTTTCCCACTTGCTATAGC+TGG | + | chr4_3:66720257-66720276 | None:intergenic | 45.0% |
CTTCGAATGCTGTGCATTTC+AGG | - | chr4_3:66720974-66720993 | Msa0657170:intron | 45.0% | |
! | GATGGTGGTCATGCTAAGAT+AGG | + | chr4_3:66721293-66721312 | None:intergenic | 45.0% |
GTATAAGACCAGTTGGATGG+TGG | + | chr4_3:66721308-66721327 | None:intergenic | 45.0% | |
CTCGTATAAGACCAGTTGGA+TGG | + | chr4_3:66721311-66721330 | None:intergenic | 45.0% | |
ACTTTGGTCCGAACTTGAAC+TGG | + | chr4_3:66721527-66721546 | None:intergenic | 45.0% | |
! | GTTCAAGTTCGGACCAAAGT+TGG | - | chr4_3:66721527-66721546 | Msa0657170:CDS | 45.0% |
! | ATGGATTACCGGTCCAACTT+TGG | + | chr4_3:66721543-66721562 | None:intergenic | 45.0% |
GAGCGTCTCACAGACATAAG+AGG | + | chr4_3:66718529-66718548 | None:intergenic | 50.0% | |
! | CCGGTTTTTACCTGCAGCAA+AGG | - | chr4_3:66718969-66718988 | Msa0657170:intron | 50.0% |
! | GCTGGCGTATCTTCTTTTCG+AGG | - | chr4_3:66719821-66719840 | Msa0657170:intron | 50.0% |
AAGGTGACTTTGGCAGTGGT+GGG | + | chr4_3:66720120-66720139 | None:intergenic | 50.0% | |
TCAGAAGGTGACTTTGGCAG+TGG | + | chr4_3:66720124-66720143 | None:intergenic | 50.0% | |
CACGACTCAGAAGGTGACTT+TGG | + | chr4_3:66720130-66720149 | None:intergenic | 50.0% | |
CAAAGTCACCTTCTGAGTCG+TGG | - | chr4_3:66720128-66720147 | Msa0657170:CDS | 50.0% | |
GAGCATCCAGCTATAGCAAG+TGG | - | chr4_3:66720248-66720267 | Msa0657170:CDS | 50.0% | |
TTTCAGTGTTTAGGAGGGCG+AGG | - | chr4_3:66721161-66721180 | Msa0657170:CDS | 50.0% | |
TAGCATGACCACCATCCAAC+TGG | - | chr4_3:66721297-66721316 | Msa0657170:CDS | 50.0% | |
TGGTCCGAACTTGAACTGGT+TGG | + | chr4_3:66721523-66721542 | None:intergenic | 50.0% | |
AGTTCGGACCAAAGTTGGAC+CGG | - | chr4_3:66721532-66721551 | Msa0657170:CDS | 50.0% | |
GAATAGCATCCCAAGCCTGC+AGG | + | chr4_3:66719646-66719665 | None:intergenic | 55.0% | |
TCGAGGTAGGCCTCAATCTC+AGG | - | chr4_3:66719838-66719857 | Msa0657170:intron | 55.0% | |
! | TTGGCAGTGGTGGGGAAAGA+AGG | + | chr4_3:66720111-66720130 | None:intergenic | 55.0% |
AGGTGACTTTGGCAGTGGTG+GGG | + | chr4_3:66720119-66720138 | None:intergenic | 55.0% | |
GAAGGTGACTTTGGCAGTGG+TGG | + | chr4_3:66720121-66720140 | None:intergenic | 55.0% | |
CGACAAAGCCACGACTCAGA+AGG | + | chr4_3:66720139-66720158 | None:intergenic | 55.0% | |
CAGTCCGTGTATTCGAGTCG+AGG | - | chr4_3:66720187-66720206 | Msa0657170:CDS | 55.0% | |
! | GCAATGGTGTCAGCCTGTCA+GGG | + | chr4_3:66720636-66720655 | None:intergenic | 55.0% |
! | TGCAATGGTGTCAGCCTGTC+AGG | + | chr4_3:66720637-66720656 | None:intergenic | 55.0% |
! | GTAGTGTTGGAGCGCGTGCT+TGG | - | chr4_3:66721666-66721685 | Msa0657170:CDS | 60.0% |
TGTTGGAGCGCGTGCTTGGT+TGG | - | chr4_3:66721670-66721689 | Msa0657170:CDS | 60.0% | |
GTTGGAGCGCGTGCTTGGTT+GGG | - | chr4_3:66721671-66721690 | Msa0657170:CDS | 60.0% | |
TCAGGAGCTGCTGCTGCTGC+TGG | - | chr4_3:66719803-66719822 | Msa0657170:intron | 65.0% | |
GAGCGCGTGCTTGGTTGGGT+GGG | - | chr4_3:66721675-66721694 | Msa0657170:CDS | 65.0% | |
AGCGCGTGCTTGGTTGGGTG+GGG | - | chr4_3:66721676-66721695 | Msa0657170:CDS | 65.0% | |
GGAGCGCGTGCTTGGTTGGG+TGG | - | chr4_3:66721674-66721693 | Msa0657170:CDS | 70.0% | |
GCGCGTGCTTGGTTGGGTGG+GGG | - | chr4_3:66721677-66721696 | Msa0657170:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 66718493 | 66721940 | 66718493 | ID=Msa0657170;Name=Msa0657170 |
chr4_3 | mRNA | 66718493 | 66721940 | 66718493 | ID=Msa0657170-mRNA-1;Parent=Msa0657170;Name=Msa0657170-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.33|0.25|1|1|1|4|137|598 |
chr4_3 | exon | 66718493 | 66718829 | 66718493 | ID=Msa0657170-mRNA-1:exon:19220;Parent=Msa0657170-mRNA-1 |
chr4_3 | exon | 66719898 | 66719940 | 66719898 | ID=Msa0657170-mRNA-1:exon:19219;Parent=Msa0657170-mRNA-1 |
chr4_3 | exon | 66720109 | 66720797 | 66720109 | ID=Msa0657170-mRNA-1:exon:19218;Parent=Msa0657170-mRNA-1 |
chr4_3 | exon | 66721076 | 66721940 | 66721076 | ID=Msa0657170-mRNA-1:exon:19217;Parent=Msa0657170-mRNA-1 |
chr4_3 | CDS | 66721076 | 66721940 | 66721076 | ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1 |
chr4_3 | CDS | 66720109 | 66720797 | 66720109 | ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1 |
chr4_3 | CDS | 66719898 | 66719940 | 66719898 | ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1 |
chr4_3 | CDS | 66718630 | 66718829 | 66718630 | ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1 |
chr4_3 | three_prime_UTR | 66718493 | 66718629 | 66718493 | ID=Msa0657170-mRNA-1:three_prime_utr;Parent=Msa0657170-mRNA-1 |
Gene Sequence |
Protein sequence |