AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657170 MtrunA17_Chr8g0379141 89.443 521 46 5 1 518 1 515 0.0 866
Msa0657170 MtrunA17_Chr2g0283911 42.977 477 184 17 2 402 1 465 1.65e-82 272
Msa0657170 MtrunA17_Chr2g0283911 51.351 111 41 3 403 513 568 665 1.65e-19 92.8
Msa0657170 MtrunA17_Chr4g0041221 32.298 322 153 12 1 266 107 419 6.20e-28 119
Msa0657170 MtrunA17_Chr2g0325871 31.930 285 154 12 1 266 6 269 1.50e-21 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657170 AT1G29240.1 28.693 589 314 22 2 513 1 560 3.82e-36 143
Msa0657170 AT2G30990.3 30.851 282 158 11 1 265 7 268 1.06e-24 108
Msa0657170 AT2G30990.4 29.316 307 160 11 1 265 7 298 8.11e-24 106
Msa0657170 AT2G30990.1 29.316 307 160 11 1 265 7 298 8.11e-24 106
Msa0657170 AT2G30990.5 29.316 307 160 11 1 265 7 298 8.11e-24 106
Msa0657170 AT2G30990.2 29.316 307 160 11 1 265 7 298 8.11e-24 106
Msa0657170 AT5G45850.1 26.750 557 233 23 2 513 1 427 1.44e-23 104
Msa0657170 AT2G34170.4 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT2G34170.6 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT2G34170.2 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT2G34170.1 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT2G34170.5 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT2G34170.3 29.306 447 248 15 116 513 79 506 1.03e-14 77.4
Msa0657170 AT4G18630.1 27.469 324 169 12 2 281 1 302 9.18e-13 71.2

Find 115 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAATTTGAACTTCTTT+TGG 0.115235 4_3:+66720472 None:intergenic
TTTCTTCTTCTTCCTCTTCT+TGG 0.145703 4_3:+66721274 None:intergenic
AAATGAAAAGCTACAGAATT+TGG 0.218935 4_3:-66721622 Msa0657170:CDS
TGTAAGCGGTTTGGATAATT+TGG 0.219338 4_3:-66721526 Msa0657170:CDS
TTTCTTGCCTCATGCATATC+TGG 0.234829 4_3:+66720713 None:intergenic
CACAATCACATGCTGTTAAA+AGG 0.240194 4_3:-66720199 Msa0657170:CDS
AGGAACCTTTCAATGGAAAT+TGG 0.242168 4_3:-66720452 Msa0657170:CDS
AGGAAGACCACATGGGAATT+TGG 0.262676 4_3:+66721127 None:intergenic
GATGATCTTCAAGACCTTCT+TGG 0.282619 4_3:-66718796 Msa0657170:CDS
TGTTGAAGACAGTGTTTCTA+AGG 0.291639 4_3:+66721560 None:intergenic
ACAACAACCTAGCACCAAAT+TGG 0.300860 4_3:-66721367 Msa0657170:CDS
AGGCTTGTGGGACTAAATAT+TGG 0.310247 4_3:-66719920 Msa0657170:CDS
CGAAAACAGGTTCTGTTACT+TGG 0.317824 4_3:+66721766 None:intergenic
TCAGGAGCTGCTGCTGCTGC+TGG 0.322511 4_3:-66720608 Msa0657170:CDS
CAATTTAGCTCTTATAAATC+AGG 0.324573 4_3:-66721075 Msa0657170:intron
TTTGTATCTTGTCACAGAAT+TGG 0.338239 4_3:+66718674 None:intergenic
AACTTTCATGACCTTGGCTT+GGG 0.359161 4_3:+66720519 None:intergenic
AGCGCGTGCTTGGTTGGGTG+GGG 0.365811 4_3:-66718735 Msa0657170:CDS
CTATATTCTTTCAGGCTTGT+GGG 0.366361 4_3:-66719932 Msa0657170:intron
TTGCTCCAAGATCCTTGTTA+TGG 0.366393 4_3:-66718697 Msa0657170:CDS
CTAAATTGAGAACTTCTGTT+AGG 0.367745 4_3:+66721090 None:intergenic
CCTATATTCTTTCAGGCTTG+TGG 0.371093 4_3:-66719933 Msa0657170:intron
TGTTTCCCACTTGCTATAGC+TGG 0.374061 4_3:+66720157 None:intergenic
GTTGCAAGGACATGGATTCT+TGG 0.383545 4_3:+66720429 None:intergenic
ATCATTATGTGTAAGCGGTT+TGG 0.386450 4_3:-66721535 Msa0657170:CDS
GACCTTCTTGGTAATGCTAA+TGG 0.391443 4_3:-66718784 Msa0657170:CDS
TCGAGGTAGGCCTCAATCTC+AGG 0.393361 4_3:-66720573 Msa0657170:CDS
TGTTGGAGCGCGTGCTTGGT+TGG 0.402308 4_3:-66718741 Msa0657170:CDS
CTCAAGAATTCATGATGAAC+CGG 0.406764 4_3:-66721461 Msa0657170:CDS
ATCTCTTCATTTCGTCGGTC+AGG 0.413475 4_3:-66720626 Msa0657170:CDS
AGAATCTTTCCTGCAGGCTT+GGG 0.415710 4_3:-66720777 Msa0657170:CDS
GAGCGCGTGCTTGGTTGGGT+GGG 0.420886 4_3:-66718736 Msa0657170:CDS
AAGAATCTTTCCTGCAGGCT+TGG 0.423897 4_3:-66720778 Msa0657170:CDS
AAATTCAAGGAACCTTTCAA+TGG 0.425265 4_3:-66720459 Msa0657170:CDS
AATATTTCAGCTAAGGGTTG+TGG 0.425504 4_3:-66721222 Msa0657170:CDS
TCCTTTGAGGATTGTAGTGT+TGG 0.426435 4_3:-66718758 Msa0657170:CDS
GTCATGTCTGATTTGTTGTA+TGG 0.430427 4_3:+66721795 None:intergenic
CTTGAAAACTTTCATGACCT+TGG 0.430428 4_3:+66720513 None:intergenic
GTTGTAGTTGATGATGGTTT+AGG 0.433631 4_3:-66720353 Msa0657170:CDS
CAAGATACAAAATCAGGATA+TGG 0.442865 4_3:-66718662 Msa0657170:CDS
ATGCTAATGGTAATCCTTTG+AGG 0.451428 4_3:-66718771 Msa0657170:CDS
CTAAACTTGATAACAAGGTT+AGG 0.452875 4_3:-66721710 Msa0657170:CDS
TCTTGGTATTGACACGTGTA+TGG 0.453421 4_3:+66721291 None:intergenic
ATTGGCCATAACAAGGATCT+TGG 0.456811 4_3:+66718692 None:intergenic
AAACTTTCATGACCTTGGCT+TGG 0.457228 4_3:+66720518 None:intergenic
CCAAAAGAAGTTCAAATTCA+AGG 0.459922 4_3:-66720472 Msa0657170:CDS
CTTGGCCAATTTCCATTGAA+AGG 0.462261 4_3:+66720447 None:intergenic
CTGTGACAAGATACAAAATC+AGG 0.462389 4_3:-66718668 Msa0657170:CDS
TCACTAACCAATTTGGTGCT+AGG 0.464499 4_3:+66721360 None:intergenic
GTTGGAGCGCGTGCTTGGTT+GGG 0.468309 4_3:-66718740 Msa0657170:CDS
GAAGGTGACTTTGGCAGTGG+TGG 0.472083 4_3:+66720293 None:intergenic
GTAGTGTTGGAGCGCGTGCT+TGG 0.475481 4_3:-66718745 Msa0657170:CDS
CAAGTAAGAATCTTTCCTGC+AGG 0.477301 4_3:-66720783 Msa0657170:intron
TTGCACAAGTTGCAAGGACA+TGG 0.478353 4_3:+66720421 None:intergenic
CATAAAAGCAAATCAAGCTC+TGG 0.478579 4_3:-66720746 Msa0657170:CDS
CAAATTGTTGTAGTTGATGA+TGG 0.479110 4_3:-66720359 Msa0657170:CDS
CAATTGAAAGACACGAAAAC+AGG 0.484249 4_3:+66721753 None:intergenic
TTGGCAGTGGTGGGGAAAGA+AGG 0.486436 4_3:+66720303 None:intergenic
GGAGCGCGTGCTTGGTTGGG+TGG 0.486901 4_3:-66718737 Msa0657170:CDS
TTATTCTCGGCCTGAGATTG+AGG 0.486901 4_3:+66720563 None:intergenic
GCGCGTGCTTGGTTGGGTGG+GGG 0.488762 4_3:-66718734 Msa0657170:CDS
GAGCGTCTCACAGACATAAG+AGG 0.491919 4_3:+66721885 None:intergenic
TATGCAAATATTTCAGCTAA+GGG 0.492036 4_3:-66721228 Msa0657170:CDS
TTTGCTTCAGTTGAAGATGT+TGG 0.500023 4_3:+66721852 None:intergenic
TACCATTAGCATTACCAAGA+AGG 0.500761 4_3:+66718782 None:intergenic
TTATGCAAATATTTCAGCTA+AGG 0.504055 4_3:-66721229 Msa0657170:CDS
TTCAATTGGGAGCATATCGC+TGG 0.504308 4_3:-66721738 Msa0657170:CDS
GTGAACTTAGTCAGATAAGT+AGG 0.505305 4_3:-66720649 Msa0657170:CDS
CACGACTCAGAAGGTGACTT+TGG 0.507091 4_3:+66720284 None:intergenic
TAGTTATCGATGTGGGACTT+AGG 0.510078 4_3:+66718612 None:intergenic
AAAGTCATAGCCTTTGCTGC+AGG 0.531670 4_3:+66721432 None:intergenic
AAGGTGACTTTGGCAGTGGT+GGG 0.542375 4_3:+66720294 None:intergenic
TAAAGAATTCGATTTACTTG+AGG 0.545338 4_3:+66721686 None:intergenic
TCACATGCTGTTAAAAGGAT+AGG 0.546488 4_3:-66720194 Msa0657170:CDS
TAGGGAGGAGAACGTAAGAA+AGG 0.547308 4_3:+66718487 None:intergenic
TGGAACATAATGATGAATGA+AGG 0.554781 4_3:-66721927 None:intergenic
GAATTCTTAATGCATGAACT+AGG 0.555451 4_3:+66721192 None:intergenic
GAGCATCCAGCTATAGCAAG+TGG 0.557921 4_3:-66720163 Msa0657170:CDS
GTAGGATCTCTTCATTTCGT+CGG 0.565108 4_3:-66720631 Msa0657170:CDS
TGATTCTTCAAAGAAACTAA+AGG 0.565821 4_3:+66720245 None:intergenic
AAAGCTACAGAATTTGGAAG+AGG 0.565842 4_3:-66721616 Msa0657170:CDS
GAATAGCATCCCAAGCCTGC+AGG 0.566153 4_3:+66720768 None:intergenic
TGAGCTTTGCACAAGTTGCA+AGG 0.572711 4_3:+66720415 None:intergenic
ACAGAATCATTATGTGTAAG+CGG 0.580192 4_3:-66721540 Msa0657170:CDS
CAAAGTCACCTTCTGAGTCG+TGG 0.581092 4_3:-66720283 Msa0657170:CDS
ATCGATAACTATGATAACTA+CGG 0.583059 4_3:-66718600 Msa0657170:three_prime_UTR
TCAGAAGGTGACTTTGGCAG+TGG 0.585919 4_3:+66720290 None:intergenic
AAGAGGTATAATGCTTACTC+TGG 0.589912 4_3:-66720671 Msa0657170:CDS
GTTATCATAGTTATCGATGT+GGG 0.590069 4_3:+66718605 None:intergenic
CATTGGATTTAATAAACACA+AGG 0.593023 4_3:+66721170 None:intergenic
CTCATGCATATCTGGTGATG+AGG 0.593781 4_3:+66720721 None:intergenic
TTTCAAGAGGCACAGTCACA+AGG 0.597869 4_3:-66720497 Msa0657170:CDS
GGAACATAATGATGAATGAA+GGG 0.600386 4_3:-66721926 None:intergenic
TTTCTTGGAGCATGTTGATG+AGG 0.603285 4_3:+66721405 None:intergenic
TAGCACCAAATTGGTTAGTG+AGG 0.603329 4_3:-66721358 Msa0657170:CDS
CACGTGTCAATACCAAGAAG+AGG 0.603427 4_3:-66721286 Msa0657170:CDS
CGACAAAGCCACGACTCAGA+AGG 0.606984 4_3:+66720275 None:intergenic
AAGCTACAGAATTTGGAAGA+GGG 0.613004 4_3:-66721615 Msa0657170:CDS
TCACAGAATTGGCCATAACA+AGG 0.619953 4_3:+66718685 None:intergenic
AAATTGAAATTCCCAAGCCA+AGG 0.620852 4_3:-66720530 Msa0657170:CDS
TAGATCTAAACTTGATAACA+AGG 0.623066 4_3:-66721715 Msa0657170:CDS
TGTTCCTCGACTCGAATACA+CGG 0.631344 4_3:+66720220 None:intergenic
AAACTCATAGGAAGACCACA+TGG 0.646908 4_3:+66721119 None:intergenic
TCCAACACTACAATCCTCAA+AGG 0.654004 4_3:+66718757 None:intergenic
AGGTGACTTTGGCAGTGGTG+GGG 0.655340 4_3:+66720295 None:intergenic
AATAAAGTAGATCATGACAA+AGG 0.655952 4_3:-66721651 Msa0657170:CDS
AGCATCCAGCTATAGCAAGT+GGG 0.660589 4_3:-66720162 Msa0657170:CDS
AATGGACGAGTGAATCGAAG+AGG 0.661083 4_3:-66720688 Msa0657170:CDS
GTGCAAAGCTCATTTGACAA+AGG 0.661335 4_3:-66720404 Msa0657170:CDS
CAGTCCGTGTATTCGAGTCG+AGG 0.663096 4_3:-66720224 Msa0657170:CDS
AGTTATCATAGTTATCGATG+TGG 0.666274 4_3:+66718604 None:intergenic
CTCATCACCAGATATGCATG+AGG 0.681013 4_3:-66720720 Msa0657170:CDS
AACTCATAGGAAGACCACAT+GGG 0.698773 4_3:+66721120 None:intergenic
ACACGTGTATGGTACAATGT+CGG 0.716795 4_3:+66721302 None:intergenic
TGGAGAACCAAATTCCCATG+TGG 0.730190 4_3:-66721134 Msa0657170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTATTTACAAAATG+AGG + chr4_3:66719592-66719611 None:intergenic 10.0%
!!! CAAAGATATAAATTTTTAAC+TGG - chr4_3:66720368-66720387 Msa0657170:CDS 15.0%
!! ATATATAGGTTACTTAAATA+TGG + chr4_3:66721070-66721089 None:intergenic 15.0%
!! AAAAAATTATTTACTCTACT+AGG + chr4_3:66721888-66721907 None:intergenic 15.0%
!!! TTTTCTAATTTGGTTATTCT+CGG + chr4_3:66719864-66719883 None:intergenic 20.0%
!!! GGAATTTCAATTTTCTAATT+TGG + chr4_3:66719874-66719893 None:intergenic 20.0%
!! AACATAAAATATTAGCTCAA+TGG + chr4_3:66720342-66720361 None:intergenic 20.0%
!! TATATTTCCTATATTCTTTC+AGG - chr4_3:66720471-66720490 Msa0657170:CDS 20.0%
!!! ATTAGTTTATATGTACTTCT+GGG + chr4_3:66720786-66720805 None:intergenic 20.0%
!! ATTTATGAAATTGCAAGAAA+AGG + chr4_3:66720911-66720930 None:intergenic 20.0%
!!! ATTGATCTGATTTTCATATT+TGG + chr4_3:66720939-66720958 None:intergenic 20.0%
!! TTACCATTTAAATAAACTTG+TGG - chr4_3:66721384-66721403 Msa0657170:CDS 20.0%
!!! ATTTTAATCGCTTGTTTAAA+TGG + chr4_3:66721415-66721434 None:intergenic 20.0%
!!! TAATATTTGAGATTTCATCA+AGG - chr4_3:66721471-66721490 Msa0657170:CDS 20.0%
!! TAGATCTAAACTTGATAACA+AGG - chr4_3:66718696-66718715 Msa0657170:CDS 25.0%
! TAAAGAATTCGATTTACTTG+AGG + chr4_3:66718728-66718747 None:intergenic 25.0%
! AATAAAGTAGATCATGACAA+AGG - chr4_3:66718760-66718779 Msa0657170:CDS 25.0%
! AAATGAAAAGCTACAGAATT+TGG - chr4_3:66718789-66718808 Msa0657170:CDS 25.0%
! TTATGCAAATATTTCAGCTA+AGG - chr4_3:66719182-66719201 Msa0657170:intron 25.0%
! TATGCAAATATTTCAGCTAA+GGG - chr4_3:66719183-66719202 Msa0657170:intron 25.0%
! CATTGGATTTAATAAACACA+AGG + chr4_3:66719244-66719263 None:intergenic 25.0%
!!! CAATTTAGCTCTTATAAATC+AGG - chr4_3:66719336-66719355 Msa0657170:intron 25.0%
! AAATTGCTATCTTGATTGAA+CGG - chr4_3:66719528-66719547 Msa0657170:intron 25.0%
! TTATTTACAAAATGAGGTCA+AGG + chr4_3:66719586-66719605 None:intergenic 25.0%
! TGATTCTTCAAAGAAACTAA+AGG + chr4_3:66720169-66720188 None:intergenic 25.0%
!! TGATCATGATTTTTGTTCTA+AGG - chr4_3:66720303-66720322 Msa0657170:CDS 25.0%
!!! TTTGTTTTGCATGATATCAT+AGG - chr4_3:66720514-66720533 Msa0657170:CDS 25.0%
! ATAGGTAACTAAATTTCTCA+TGG - chr4_3:66720532-66720551 Msa0657170:CDS 25.0%
! GACAACAAATGTAAACATAA+TGG + chr4_3:66720599-66720618 None:intergenic 25.0%
! ATGTATCAAGAAAAATGCAA+TGG + chr4_3:66720652-66720671 None:intergenic 25.0%
! AGAAGAATACATATCCTAAT+TGG - chr4_3:66720685-66720704 Msa0657170:CDS 25.0%
!! GTTTTTATTGATCACCAATT+AGG + chr4_3:66720702-66720721 None:intergenic 25.0%
!! AAAACAAACAAAGCTTCTTT+TGG - chr4_3:66720717-66720736 Msa0657170:CDS 25.0%
!! TGAAATTTTGAATCCATTGA+AGG + chr4_3:66720753-66720772 None:intergenic 25.0%
! TTAGTTTATATGTACTTCTG+GGG + chr4_3:66720785-66720804 None:intergenic 25.0%
!! CATTAGTTTATATGTACTTC+TGG + chr4_3:66720787-66720806 None:intergenic 25.0%
! GATTAATCTACAGCATATAT+AGG + chr4_3:66721084-66721103 None:intergenic 25.0%
!! CTTTTTAAATGCCATGAAAT+AGG - chr4_3:66721103-66721122 Msa0657170:CDS 25.0%
!! TGTTAGTATCATGTTGATAA+TGG + chr4_3:66721199-66721218 None:intergenic 25.0%
!! GGTTATGAAGTTTCTTTTAA+CGG + chr4_3:66721235-66721254 None:intergenic 25.0%
!!! AGAATAAATTTGCTAGAGTA+TGG + chr4_3:66721256-66721275 None:intergenic 25.0%
!! TTTAAATGGTAATGCAACAA+TGG + chr4_3:66721376-66721395 None:intergenic 25.0%
! ATGCCACAAGTTTATTTAAA+TGG + chr4_3:66721390-66721409 None:intergenic 25.0%
! ATCGATAACTATGATAACTA+CGG - chr4_3:66721811-66721830 Msa0657170:CDS 25.0%
! TGTTTTCGTGTCTTTCAATT+GGG - chr4_3:66718660-66718679 Msa0657170:CDS 30.0%
! CTAAACTTGATAACAAGGTT+AGG - chr4_3:66718701-66718720 Msa0657170:CDS 30.0%
ACAGAATCATTATGTGTAAG+CGG - chr4_3:66718871-66718890 Msa0657170:intron 30.0%
! AACAGAACAGATTGTTTTCT+TGG + chr4_3:66719024-66719043 None:intergenic 30.0%
GAATTCTTAATGCATGAACT+AGG + chr4_3:66719222-66719241 None:intergenic 30.0%
CTAAATTGAGAACTTCTGTT+AGG + chr4_3:66719324-66719343 None:intergenic 30.0%
ATAGAAAACTCAGACTAACA+TGG + chr4_3:66719385-66719404 None:intergenic 30.0%
! CCTTGAATTTGAACTTCTTT+TGG + chr4_3:66719942-66719961 None:intergenic 30.0%
CCAAAAGAAGTTCAAATTCA+AGG - chr4_3:66719939-66719958 Msa0657170:intron 30.0%
AAATTCAAGGAACCTTTCAA+TGG - chr4_3:66719952-66719971 Msa0657170:intron 30.0%
!! CAAATTGTTGTAGTTGATGA+TGG - chr4_3:66720052-66720071 Msa0657170:intron 30.0%
ATTAGCTCAATGGATAAATG+AGG + chr4_3:66720332-66720351 None:intergenic 30.0%
TGGCAATTAACTTTCATTAC+AGG - chr4_3:66720388-66720407 Msa0657170:CDS 30.0%
TGAATGCTGAGGTTTATATA+AGG + chr4_3:66720420-66720439 None:intergenic 30.0%
AGCATTCAAAATCTTAGAGA+TGG - chr4_3:66720432-66720451 Msa0657170:CDS 30.0%
TATGAAATTGCAAGAAAAGG+CGG + chr4_3:66720908-66720927 None:intergenic 30.0%
ACTAGCAAATTTCAGTGTTT+AGG - chr4_3:66721152-66721171 Msa0657170:CDS 30.0%
!! ATATCAGTTCAATGGATTAC+CGG + chr4_3:66721554-66721573 None:intergenic 30.0%
ATATGAGCATATCAGTTCAA+TGG + chr4_3:66721562-66721581 None:intergenic 30.0%
TTTGTATCTTGTCACAGAAT+TGG + chr4_3:66721740-66721759 None:intergenic 30.0%
CAAGATACAAAATCAGGATA+TGG - chr4_3:66721749-66721768 Msa0657170:CDS 30.0%
GTTATCATAGTTATCGATGT+GGG + chr4_3:66721809-66721828 None:intergenic 30.0%
AGTTATCATAGTTATCGATG+TGG + chr4_3:66721810-66721829 None:intergenic 30.0%
TTTGCTTCAGTTGAAGATGT+TGG + chr4_3:66718562-66718581 None:intergenic 35.0%
!! GTCATGTCTGATTTGTTGTA+TGG + chr4_3:66718619-66718638 None:intergenic 35.0%
CAATTGAAAGACACGAAAAC+AGG + chr4_3:66718661-66718680 None:intergenic 35.0%
! CTGTTTTCGTGTCTTTCAAT+TGG - chr4_3:66718659-66718678 Msa0657170:CDS 35.0%
AAAGCTACAGAATTTGGAAG+AGG - chr4_3:66718795-66718814 Msa0657170:CDS 35.0%
AAGCTACAGAATTTGGAAGA+GGG - chr4_3:66718796-66718815 Msa0657170:CDS 35.0%
! TGTTGAAGACAGTGTTTCTA+AGG + chr4_3:66718854-66718873 None:intergenic 35.0%
ATCATTATGTGTAAGCGGTT+TGG - chr4_3:66718876-66718895 Msa0657170:intron 35.0%
! TGTAAGCGGTTTGGATAATT+TGG - chr4_3:66718885-66718904 Msa0657170:intron 35.0%
CTCAAGAATTCATGATGAAC+CGG - chr4_3:66718950-66718969 Msa0657170:intron 35.0%
! CTTTTCCTCACTAACCAATT+TGG + chr4_3:66719061-66719080 None:intergenic 35.0%
TTTCTTCTTCTTCCTCTTCT+TGG + chr4_3:66719140-66719159 None:intergenic 35.0%
AATATTTCAGCTAAGGGTTG+TGG - chr4_3:66719189-66719208 Msa0657170:intron 35.0%
! GTTAGGCTTTTCAAACTCAT+AGG + chr4_3:66719307-66719326 None:intergenic 35.0%
GTTCTTACCTTCTTTATGGA+TGG + chr4_3:66719363-66719382 None:intergenic 35.0%
CATGGTTCTTACCTTCTTTA+TGG + chr4_3:66719367-66719386 None:intergenic 35.0%
! ATGCACTATCGACTATTGAA+AGG + chr4_3:66719561-66719580 None:intergenic 35.0%
CATAAAAGCAAATCAAGCTC+TGG - chr4_3:66719665-66719684 Msa0657170:intron 35.0%
TGCATGAGGCAAGAAAAAAA+TGG - chr4_3:66719705-66719724 Msa0657170:intron 35.0%
! AAGAGGTATAATGCTTACTC+TGG - chr4_3:66719740-66719759 Msa0657170:intron 35.0%
GTGAACTTAGTCAGATAAGT+AGG - chr4_3:66719762-66719781 Msa0657170:intron 35.0%
AAATTGAAATTCCCAAGCCA+AGG - chr4_3:66719881-66719900 Msa0657170:intron 35.0%
CTTGAAAACTTTCATGACCT+TGG + chr4_3:66719901-66719920 None:intergenic 35.0%
!! AGGTCATGAAAGTTTTCAAG+AGG - chr4_3:66719901-66719920 Msa0657170:CDS 35.0%
AGGAACCTTTCAATGGAAAT+TGG - chr4_3:66719959-66719978 Msa0657170:intron 35.0%
!! GTTGTAGTTGATGATGGTTT+AGG - chr4_3:66720058-66720077 Msa0657170:intron 35.0%
CACAATCACATGCTGTTAAA+AGG - chr4_3:66720212-66720231 Msa0657170:CDS 35.0%
TCACATGCTGTTAAAAGGAT+AGG - chr4_3:66720217-66720236 Msa0657170:CDS 35.0%
!!! CTCTAAGATTTTGAATGCTG+AGG + chr4_3:66720431-66720450 None:intergenic 35.0%
AAATCTTAGAGATGGAACTC+TGG - chr4_3:66720440-66720459 Msa0657170:CDS 35.0%
CTATATTCTTTCAGGCTTGT+GGG - chr4_3:66720479-66720498 Msa0657170:CDS 35.0%
TGGACTAATGATACCTTCAA+TGG - chr4_3:66720737-66720756 Msa0657170:CDS 35.0%
GTTGCATACTTCCTATTTCA+TGG + chr4_3:66721117-66721136 None:intergenic 35.0%
AGCAAATTTCAGTGTTTAGG+AGG - chr4_3:66721155-66721174 Msa0657170:CDS 35.0%
GCAAATTTCAGTGTTTAGGA+GGG - chr4_3:66721156-66721175 Msa0657170:CDS 35.0%
CAAGGTAATCAAAATCAGAC+TGG - chr4_3:66721489-66721508 Msa0657170:CDS 35.0%
TACCATTAGCATTACCAAGA+AGG + chr4_3:66721632-66721651 None:intergenic 35.0%
ATGCTAATGGTAATCCTTTG+AGG - chr4_3:66721640-66721659 Msa0657170:CDS 35.0%
CTGTGACAAGATACAAAATC+AGG - chr4_3:66721743-66721762 Msa0657170:CDS 35.0%
CGAAAACAGGTTCTGTTACT+TGG + chr4_3:66718648-66718667 None:intergenic 40.0%
TTTCTTGGAGCATGTTGATG+AGG + chr4_3:66719009-66719028 None:intergenic 40.0%
ACAACAACCTAGCACCAAAT+TGG - chr4_3:66719044-66719063 Msa0657170:intron 40.0%
!! TCACTAACCAATTTGGTGCT+AGG + chr4_3:66719054-66719073 None:intergenic 40.0%
TAGCACCAAATTGGTTAGTG+AGG - chr4_3:66719053-66719072 Msa0657170:intron 40.0%
ACACGTGTATGGTACAATGT+CGG + chr4_3:66719112-66719131 None:intergenic 40.0%
!! TCTTGGTATTGACACGTGTA+TGG + chr4_3:66719123-66719142 None:intergenic 40.0%
TCCAATGCCTGACACAAAAA+TGG - chr4_3:66719257-66719276 Msa0657170:intron 40.0%
!! TCCATTTTTGTGTCAGGCAT+TGG + chr4_3:66719261-66719280 None:intergenic 40.0%
!! TGGTTCTCCATTTTTGTGTC+AGG + chr4_3:66719267-66719286 None:intergenic 40.0%
AACTCATAGGAAGACCACAT+GGG + chr4_3:66719294-66719313 None:intergenic 40.0%
AAACTCATAGGAAGACCACA+TGG + chr4_3:66719295-66719314 None:intergenic 40.0%
ATCAGGTCCATCCATAAAGA+AGG - chr4_3:66719353-66719372 Msa0657170:intron 40.0%
CACTCAGTGTTGTCAAATAG+CGG - chr4_3:66719421-66719440 Msa0657170:intron 40.0%
CAAGTAAGAATCTTTCCTGC+AGG - chr4_3:66719628-66719647 Msa0657170:intron 40.0%
TTTCTTGCCTCATGCATATC+TGG + chr4_3:66719701-66719720 None:intergenic 40.0%
GTAGGATCTCTTCATTTCGT+CGG - chr4_3:66719780-66719799 Msa0657170:intron 40.0%
AACTTTCATGACCTTGGCTT+GGG + chr4_3:66719895-66719914 None:intergenic 40.0%
AAACTTTCATGACCTTGGCT+TGG + chr4_3:66719896-66719915 None:intergenic 40.0%
CTTGGCCAATTTCCATTGAA+AGG + chr4_3:66719967-66719986 None:intergenic 40.0%
GTGCAAAGCTCATTTGACAA+AGG - chr4_3:66720007-66720026 Msa0657170:intron 40.0%
CCACAAGCCTGAAAGAATAT+AGG + chr4_3:66720481-66720500 None:intergenic 40.0%
CCTATATTCTTTCAGGCTTG+TGG - chr4_3:66720478-66720497 Msa0657170:CDS 40.0%
AGGCTTGTGGGACTAAATAT+TGG - chr4_3:66720491-66720510 Msa0657170:CDS 40.0%
TCTTAAAATTGAGCCCTGAC+AGG - chr4_3:66720620-66720639 Msa0657170:CDS 40.0%
TGCTAGTGACAACTTGAAGT+AGG + chr4_3:66721139-66721158 None:intergenic 40.0%
TCTTCTCGTATAAGACCAGT+TGG + chr4_3:66721315-66721334 None:intergenic 40.0%
!! CTGGTCTTATACGAGAAGAA+TGG - chr4_3:66721316-66721335 Msa0657170:CDS 40.0%
! TGAACCAACCAGTTCAAGTT+CGG - chr4_3:66721516-66721535 Msa0657170:CDS 40.0%
GATGATCTTCAAGACCTTCT+TGG - chr4_3:66721615-66721634 Msa0657170:CDS 40.0%
!! GACCTTCTTGGTAATGCTAA+TGG - chr4_3:66721627-66721646 Msa0657170:CDS 40.0%
! TCCTTTGAGGATTGTAGTGT+TGG - chr4_3:66721653-66721672 Msa0657170:CDS 40.0%
TCCAACACTACAATCCTCAA+AGG + chr4_3:66721657-66721676 None:intergenic 40.0%
TTGCTCCAAGATCCTTGTTA+TGG - chr4_3:66721714-66721733 Msa0657170:CDS 40.0%
ATTGGCCATAACAAGGATCT+TGG + chr4_3:66721722-66721741 None:intergenic 40.0%
TCACAGAATTGGCCATAACA+AGG + chr4_3:66721729-66721748 None:intergenic 40.0%
TAGTTATCGATGTGGGACTT+AGG + chr4_3:66721802-66721821 None:intergenic 40.0%
! TTCAATTGGGAGCATATCGC+TGG - chr4_3:66718673-66718692 Msa0657170:CDS 45.0%
CCTTTGCTGCAGGTAAAAAC+CGG + chr4_3:66718972-66718991 None:intergenic 45.0%
AAAGTCATAGCCTTTGCTGC+AGG + chr4_3:66718982-66719001 None:intergenic 45.0%
CACGTGTCAATACCAAGAAG+AGG - chr4_3:66719125-66719144 Msa0657170:intron 45.0%
TGGAGAACCAAATTCCCATG+TGG - chr4_3:66719277-66719296 Msa0657170:intron 45.0%
AGGAAGACCACATGGGAATT+TGG + chr4_3:66719287-66719306 None:intergenic 45.0%
AAGAATCTTTCCTGCAGGCT+TGG - chr4_3:66719633-66719652 Msa0657170:intron 45.0%
AGAATCTTTCCTGCAGGCTT+GGG - chr4_3:66719634-66719653 Msa0657170:intron 45.0%
! CTCATGCATATCTGGTGATG+AGG + chr4_3:66719693-66719712 None:intergenic 45.0%
CTCATCACCAGATATGCATG+AGG - chr4_3:66719691-66719710 Msa0657170:intron 45.0%
AATGGACGAGTGAATCGAAG+AGG - chr4_3:66719723-66719742 Msa0657170:intron 45.0%
ATCTCTTCATTTCGTCGGTC+AGG - chr4_3:66719785-66719804 Msa0657170:intron 45.0%
!! GCGTATCTTCTTTTCGAGGT+AGG - chr4_3:66719825-66719844 Msa0657170:intron 45.0%
TTATTCTCGGCCTGAGATTG+AGG + chr4_3:66719851-66719870 None:intergenic 45.0%
! TTTCAAGAGGCACAGTCACA+AGG - chr4_3:66719914-66719933 Msa0657170:CDS 45.0%
GTTGCAAGGACATGGATTCT+TGG + chr4_3:66719985-66720004 None:intergenic 45.0%
TTGCACAAGTTGCAAGGACA+TGG + chr4_3:66719993-66720012 None:intergenic 45.0%
TGAGCTTTGCACAAGTTGCA+AGG + chr4_3:66719999-66720018 None:intergenic 45.0%
! TGTTCCTCGACTCGAATACA+CGG + chr4_3:66720194-66720213 None:intergenic 45.0%
AGCATCCAGCTATAGCAAGT+GGG - chr4_3:66720249-66720268 Msa0657170:CDS 45.0%
!! TGTTTCCCACTTGCTATAGC+TGG + chr4_3:66720257-66720276 None:intergenic 45.0%
CTTCGAATGCTGTGCATTTC+AGG - chr4_3:66720974-66720993 Msa0657170:intron 45.0%
! GATGGTGGTCATGCTAAGAT+AGG + chr4_3:66721293-66721312 None:intergenic 45.0%
GTATAAGACCAGTTGGATGG+TGG + chr4_3:66721308-66721327 None:intergenic 45.0%
CTCGTATAAGACCAGTTGGA+TGG + chr4_3:66721311-66721330 None:intergenic 45.0%
ACTTTGGTCCGAACTTGAAC+TGG + chr4_3:66721527-66721546 None:intergenic 45.0%
! GTTCAAGTTCGGACCAAAGT+TGG - chr4_3:66721527-66721546 Msa0657170:CDS 45.0%
! ATGGATTACCGGTCCAACTT+TGG + chr4_3:66721543-66721562 None:intergenic 45.0%
GAGCGTCTCACAGACATAAG+AGG + chr4_3:66718529-66718548 None:intergenic 50.0%
! CCGGTTTTTACCTGCAGCAA+AGG - chr4_3:66718969-66718988 Msa0657170:intron 50.0%
! GCTGGCGTATCTTCTTTTCG+AGG - chr4_3:66719821-66719840 Msa0657170:intron 50.0%
AAGGTGACTTTGGCAGTGGT+GGG + chr4_3:66720120-66720139 None:intergenic 50.0%
TCAGAAGGTGACTTTGGCAG+TGG + chr4_3:66720124-66720143 None:intergenic 50.0%
CACGACTCAGAAGGTGACTT+TGG + chr4_3:66720130-66720149 None:intergenic 50.0%
CAAAGTCACCTTCTGAGTCG+TGG - chr4_3:66720128-66720147 Msa0657170:CDS 50.0%
GAGCATCCAGCTATAGCAAG+TGG - chr4_3:66720248-66720267 Msa0657170:CDS 50.0%
TTTCAGTGTTTAGGAGGGCG+AGG - chr4_3:66721161-66721180 Msa0657170:CDS 50.0%
TAGCATGACCACCATCCAAC+TGG - chr4_3:66721297-66721316 Msa0657170:CDS 50.0%
TGGTCCGAACTTGAACTGGT+TGG + chr4_3:66721523-66721542 None:intergenic 50.0%
AGTTCGGACCAAAGTTGGAC+CGG - chr4_3:66721532-66721551 Msa0657170:CDS 50.0%
GAATAGCATCCCAAGCCTGC+AGG + chr4_3:66719646-66719665 None:intergenic 55.0%
TCGAGGTAGGCCTCAATCTC+AGG - chr4_3:66719838-66719857 Msa0657170:intron 55.0%
! TTGGCAGTGGTGGGGAAAGA+AGG + chr4_3:66720111-66720130 None:intergenic 55.0%
AGGTGACTTTGGCAGTGGTG+GGG + chr4_3:66720119-66720138 None:intergenic 55.0%
GAAGGTGACTTTGGCAGTGG+TGG + chr4_3:66720121-66720140 None:intergenic 55.0%
CGACAAAGCCACGACTCAGA+AGG + chr4_3:66720139-66720158 None:intergenic 55.0%
CAGTCCGTGTATTCGAGTCG+AGG - chr4_3:66720187-66720206 Msa0657170:CDS 55.0%
! GCAATGGTGTCAGCCTGTCA+GGG + chr4_3:66720636-66720655 None:intergenic 55.0%
! TGCAATGGTGTCAGCCTGTC+AGG + chr4_3:66720637-66720656 None:intergenic 55.0%
! GTAGTGTTGGAGCGCGTGCT+TGG - chr4_3:66721666-66721685 Msa0657170:CDS 60.0%
TGTTGGAGCGCGTGCTTGGT+TGG - chr4_3:66721670-66721689 Msa0657170:CDS 60.0%
GTTGGAGCGCGTGCTTGGTT+GGG - chr4_3:66721671-66721690 Msa0657170:CDS 60.0%
TCAGGAGCTGCTGCTGCTGC+TGG - chr4_3:66719803-66719822 Msa0657170:intron 65.0%
GAGCGCGTGCTTGGTTGGGT+GGG - chr4_3:66721675-66721694 Msa0657170:CDS 65.0%
AGCGCGTGCTTGGTTGGGTG+GGG - chr4_3:66721676-66721695 Msa0657170:CDS 65.0%
GGAGCGCGTGCTTGGTTGGG+TGG - chr4_3:66721674-66721693 Msa0657170:CDS 70.0%
GCGCGTGCTTGGTTGGGTGG+GGG - chr4_3:66721677-66721696 Msa0657170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66718493 66721940 66718493 ID=Msa0657170;Name=Msa0657170
chr4_3 mRNA 66718493 66721940 66718493 ID=Msa0657170-mRNA-1;Parent=Msa0657170;Name=Msa0657170-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.33|0.25|1|1|1|4|137|598
chr4_3 exon 66718493 66718829 66718493 ID=Msa0657170-mRNA-1:exon:19220;Parent=Msa0657170-mRNA-1
chr4_3 exon 66719898 66719940 66719898 ID=Msa0657170-mRNA-1:exon:19219;Parent=Msa0657170-mRNA-1
chr4_3 exon 66720109 66720797 66720109 ID=Msa0657170-mRNA-1:exon:19218;Parent=Msa0657170-mRNA-1
chr4_3 exon 66721076 66721940 66721076 ID=Msa0657170-mRNA-1:exon:19217;Parent=Msa0657170-mRNA-1
chr4_3 CDS 66721076 66721940 66721076 ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1
chr4_3 CDS 66720109 66720797 66720109 ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1
chr4_3 CDS 66719898 66719940 66719898 ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1
chr4_3 CDS 66718630 66718829 66718630 ID=Msa0657170-mRNA-1:cds;Parent=Msa0657170-mRNA-1
chr4_3 three_prime_UTR 66718493 66718629 66718493 ID=Msa0657170-mRNA-1:three_prime_utr;Parent=Msa0657170-mRNA-1
Gene Sequence

>Msa0657170

ATGATGAATGAAGGGAAATTGAATATTAATGCTCCTCTTATGTCTGTGAGACGCTCTATTTGTACACCAACATCTTCAACTGAAGCAAAGATCAAGATATTAGATAATTCAGCACATTCTCTTCCATACAACAAATCAGACATGACTCAAGACCAAGTAACAGAACCTGTTTTCGTGTCTTTCAATTGGGAGCATATCGCTGGTAGATCTAAACTTGATAACAAGGTTAGGTCCTCAAGTAAATCGAATTCTTTAAGTGACATTATGAATAAAGTAGATCATGACAAAGGACAAAAAAATGAAAAGCTACAGAATTTGGAAGAGGGTGACGACGACGACGATGATGCTTTTTCAGATGCCTTAGAAACACTGTCTTCAACAGAATCATTATGTGTAAGCGGTTTGGATAATTTGGATGCAAACAAGTGTAGAATCTCTTCTACTGATGATAAACAAGCTCAAGAATTCATGATGAACCGGTTTTTACCTGCAGCAAAGGCTATGACTTTACAACCTCATCAACATGCTCCAAGAAAACAATCTGTTCTGTTACAACAACCTAGCACCAAATTGGTTAGTGAGGAAAAGAACTCTTTTGTTAACAATAGAAATATCACCGACATTGTACCATACACGTGTCAATACCAAGAAGAGGAAGAAGAAGAAAGTGATCATGATGAAACTGATGATTATGCAAATATTTCAGCTAAGGGTTGTGGATTATTTCCTAGTTCATGCATTAAGAATTCCTTGTGTTTATTAAATCCAATGCCTGACACAAAAATGGAGAACCAAATTCCCATGTGGTCTTCCTATGAGTTTGAAAAGCCTAACAGAAGTTCTCAATTTAGCTCTTATAAATCAGAATCTTTCCTGCAGGCTTGGGATGCTATTCATAAAAGCAAATCAAGCTCTGGAGCCTCATCACCAGATATGCATGAGGCAAGAAAAAAATGGACGAGTGAATCGAAGAGGTATAATGCTTACTCTGGTGAACTTAGTCAGATAAGTAGGATCTCTTCATTTCGTCGGTCAGGAGCTGCTGCTGCTGCTGGCGTATCTTCTTTTCGAGGTAGGCCTCAATCTCAGGCCGAGAATAACCAAATTAGAAAATTGAAATTCCCAAGCCAAGGTCATGAAAGTTTTCAAGAGGCACAGTCACAAGGATCCAAAAGAAGTTCAAATTCAAGGAACCTTTCAATGGAAATTGGCCAAGAATCCATGTCCTTGCAACTTGTGCAAAGCTCATTTGACAAAGGTACAAAGTTTAACAACAACAAGCAAATTGTTGTAGTTGATGATGGTTTAGGAAAAAGTGATGCTAAAAGTGTTATGCACCTTCTTTCCCCACCACTGCCAAAGTCACCTTCTGAGTCGTGGCTTTGTCGTGCATTGCCTTTAGTTTCTTTGAAGAATCAGTCCGTGTATTCGAGTCGAGGAACACAATCACATGCTGTTAAAAGGATAGGATATAGTAGAGCATCCAGCTATAGCAAGTGGGAAACAATAGTGAAAACTTCAAATTTGCATCATGATCATGATTTTTGTTCTAAGGCTTGTGGGACTAAATATTGGTTTGTTTTGCATGATATCATAGAAGAGAAGTCTGATGATCTTCAAGACCTTCTTGGTAATGCTAATGGTAATCCTTTGAGGATTGTAGTGTTGGAGCGCGTGCTTGGTTGGGTGGGGGAGTGTTTTTGCAGTTTGCTCCAAGATCCTTGTTATGGCCAATTCTGTGACAAGATACAAAATCAGGATATGGAGACATGTACAAAAAGAATGACAGTGTCCTAA

Protein sequence

>Msa0657170

MMNEGKLNINAPLMSVRRSICTPTSSTEAKIKILDNSAHSLPYNKSDMTQDQVTEPVFVSFNWEHIAGRSKLDNKVRSSSKSNSLSDIMNKVDHDKGQKNEKLQNLEEGDDDDDDAFSDALETLSSTESLCVSGLDNLDANKCRISSTDDKQAQEFMMNRFLPAAKAMTLQPHQHAPRKQSVLLQQPSTKLVSEEKNSFVNNRNITDIVPYTCQYQEEEEEESDHDETDDYANISAKGCGLFPSSCIKNSLCLLNPMPDTKMENQIPMWSSYEFEKPNRSSQFSSYKSESFLQAWDAIHKSKSSSGASSPDMHEARKKWTSESKRYNAYSGELSQISRISSFRRSGAAAAAGVSSFRGRPQSQAENNQIRKLKFPSQGHESFQEAQSQGSKRSSNSRNLSMEIGQESMSLQLVQSSFDKGTKFNNNKQIVVVDDGLGKSDAKSVMHLLSPPLPKSPSESWLCRALPLVSLKNQSVYSSRGTQSHAVKRIGYSRASSYSKWETIVKTSNLHHDHDFCSKACGTKYWFVLHDIIEEKSDDLQDLLGNANGNPLRIVVLERVLGWVGECFCSLLQDPCYGQFCDKIQNQDMETCTKRMTVS*