Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658810 | XP_013456604.1 | 97.887 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 3.74e-96 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658810 | sp|Q0DWQ7|CCB12_ORYSJ | 49.091 | 110 | 54 | 2 | 7 | 115 | 6 | 114 | 1.08e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658810 | Msa1193690 | 0.809297 | 2.028850e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658810 | MtrunA17_Chr4g0039401 | 97.887 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 3.44e-100 | 283 |
| Msa0658810 | MtrunA17_Chr5g0395831 | 57.042 | 142 | 34 | 1 | 1 | 142 | 1 | 115 | 5.29e-50 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658810 | AT1G67250.1 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 4.84e-69 | 205 |
| Msa0658810 | AT5G38650.1 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 9.52e-67 | 199 |
| Msa0658810 | AT5G38660.2 | 67.857 | 140 | 45 | 0 | 3 | 142 | 292 | 431 | 2.93e-63 | 199 |
Find 64 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGTTCATTAGAATTAA+AGG | 0.210110 | 4_3:-68950366 | Msa0658810:three_prime_UTR |
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4_3:-68953689 | Msa0658810:intron |
| ACAAAATCGCTTATATATAA+AGG | 0.263479 | 4_3:+68954268 | None:intergenic |
| CACAAGTGTGCAATTAAATA+TGG | 0.296144 | 4_3:+68950291 | None:intergenic |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4_3:-68951781 | Msa0658810:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4_3:-68951794 | Msa0658810:CDS |
| AGTTCGCCTTGGTCTATCTA+AGG | 0.328350 | 4_3:-68950468 | Msa0658810:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4_3:-68951800 | Msa0658810:CDS |
| CACAAGTGTGCAATTAAATA+TGG | 0.358707 | 4_3:+68950334 | None:intergenic |
| CAAAATCGCTTATATATAAA+GGG | 0.365009 | 4_3:+68954269 | None:intergenic |
| ACTTGTGTTTGCCTATGTTT+CGG | 0.367323 | 4_3:-68950318 | Msa0658810:three_prime_UTR |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4_3:-68954135 | Msa0658810:CDS |
| AAATGTGTTTATATAATACT+TGG | 0.379976 | 4_3:+68950434 | None:intergenic |
| TCGGATGCTATAAATGTTAC+GGG | 0.381859 | 4_3:-68950256 | Msa0658810:three_prime_UTR |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4_3:-68951823 | Msa0658810:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4_3:+68954151 | None:intergenic |
| TGTTGTTCATTAGAATTAAA+GGG | 0.410309 | 4_3:-68950365 | Msa0658810:three_prime_UTR |
| ACTTGTGTTTGCCTATGTTT+CGG | 0.421748 | 4_3:-68950275 | Msa0658810:three_prime_UTR |
| TTCGGATGCTATAAATGTTA+CGG | 0.422233 | 4_3:-68950257 | Msa0658810:three_prime_UTR |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4_3:-68951799 | Msa0658810:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4_3:+68951815 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4_3:-68953738 | Msa0658810:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4_3:-68954165 | Msa0658810:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4_3:-68954126 | Msa0658810:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4_3:-68951763 | Msa0658810:CDS |
| ATGATTATGTGCTACAAAAG+AGG | 0.519341 | 4_3:+68950214 | None:intergenic |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4_3:-68951822 | Msa0658810:intron |
| ATTTATAGCATCCGAAACAT+AGG | 0.521550 | 4_3:+68950264 | None:intergenic |
| CATTAGAATTAAAGGGTCCA+TGG | 0.523386 | 4_3:-68950358 | Msa0658810:three_prime_UTR |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4_3:-68951831 | Msa0658810:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4_3:-68953704 | Msa0658810:CDS |
| GTGCAATTAAATATGGTCCA+TGG | 0.535433 | 4_3:+68950341 | None:intergenic |
| TATATAATACTTGGGTACAC+TGG | 0.537892 | 4_3:+68950443 | None:intergenic |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4_3:+68951793 | None:intergenic |
| AATATGGCAATCCGAAACAT+AGG | 0.544901 | 4_3:+68950307 | None:intergenic |
| ATTGGACATGCACCACGGAA+TGG | 0.546291 | 4_3:-68950492 | Msa0658810:CDS |
| CACGGAATGGAAGTTCGCCT+TGG | 0.547717 | 4_3:-68950479 | Msa0658810:CDS |
| CTTTCAGTATCGAGTTTCAG+TGG | 0.553133 | 4_3:+68954241 | None:intergenic |
| ATTCCGTGGTGCATGTCCAA+TGG | 0.554833 | 4_3:+68950494 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4_3:-68953761 | Msa0658810:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4_3:+68953705 | None:intergenic |
| AATGTGTTTATATAATACTT+GGG | 0.572452 | 4_3:+68950435 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4_3:+68954107 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4_3:+68954161 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4_3:+68954108 | None:intergenic |
| GTTCGCCTTGGTCTATCTAA+GGG | 0.596428 | 4_3:-68950467 | Msa0658810:CDS |
| CGGCCATTGGACATGCACCA+CGG | 0.610558 | 4_3:-68950497 | Msa0658810:CDS |
| CGAAAAGTCTCTGATTCACG+AGG | 0.611926 | 4_3:+68950518 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4_3:+68951805 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4_3:-68954105 | Msa0658810:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4_3:+68954076 | None:intergenic |
| CAAGGCGAACTTCCATTCCG+TGG | 0.661589 | 4_3:+68950480 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4_3:-68951821 | Msa0658810:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4_3:-68954162 | Msa0658810:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4_3:+68954075 | None:intergenic |
| TCGAAACACAGAAATCGACA+TGG | 0.680505 | 4_3:-68954199 | Msa0658810:exon |
| CGGATGCTATAAATGTTACG+GGG | 0.684518 | 4_3:-68950255 | Msa0658810:three_prime_UTR |
| TGTGCTACAAAAGAGGTATG+CGG | 0.685120 | 4_3:+68950221 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4_3:+68954131 | None:intergenic |
| CTGGTCCCTTAGATAGACCA+AGG | 0.705296 | 4_3:+68950462 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4_3:+68951808 | None:intergenic |
| GAAAAGTCTCTGATTCACGA+GGG | 0.726373 | 4_3:+68950519 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4_3:+68954136 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4_3:+68954109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4_3:68950604-68950623 | Msa0658810:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4_3:68950792-68950811 | Msa0658810:intron | 10.0% |
| !! | AATGAAAATGAAATATTATT+AGG | - | chr4_3:68952956-68952975 | Msa0658810:intron | 10.0% |
| !! | ATGAAAATGAAATATTATTA+GGG | - | chr4_3:68952957-68952976 | Msa0658810:intron | 10.0% |
| !! | TGAATTTAGGAAAAAAAAAT+AGG | - | chr4_3:68950516-68950535 | Msa0658810:CDS | 15.0% |
| !! | GAATTTAGGAAAAAAAAATA+GGG | - | chr4_3:68950517-68950536 | Msa0658810:CDS | 15.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4_3:68951208-68951227 | Msa0658810:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4_3:68951209-68951228 | Msa0658810:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4_3:68951797-68951816 | Msa0658810:CDS | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4_3:68952031-68952050 | Msa0658810:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4_3:68952041-68952060 | Msa0658810:intron | 15.0% |
| !!! | ATTTTAATTTTTTGTCACTA+TGG | - | chr4_3:68952774-68952793 | Msa0658810:intron | 15.0% |
| !! | AATGAAGCATAATTATAATA+TGG | + | chr4_3:68953095-68953114 | None:intergenic | 15.0% |
| !! | ACCTTATATATAGATTATAT+AGG | - | chr4_3:68953264-68953283 | Msa0658810:intron | 15.0% |
| !! | TCCTATATAATCTATATATA+AGG | + | chr4_3:68953268-68953287 | None:intergenic | 15.0% |
| !! | AATCTTAATAATGATACAAA+TGG | + | chr4_3:68953454-68953473 | None:intergenic | 15.0% |
| !!! | AATTTTTTAGTTTTAGCTAT+TGG | - | chr4_3:68953748-68953767 | Msa0658810:CDS | 15.0% |
| !! | AATGTGTTTATATAATACTT+GGG | + | chr4_3:68954011-68954030 | None:intergenic | 15.0% |
| !! | AAATGTGTTTATATAATACT+TGG | + | chr4_3:68954012-68954031 | None:intergenic | 15.0% |
| !! | CAAAATCGCTTATATATAAA+GGG | + | chr4_3:68950177-68950196 | None:intergenic | 20.0% |
| !! | ACAAAATCGCTTATATATAA+AGG | + | chr4_3:68950178-68950197 | None:intergenic | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4_3:68950455-68950474 | None:intergenic | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4_3:68950577-68950596 | Msa0658810:intron | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4_3:68951210-68951229 | Msa0658810:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4_3:68951485-68951504 | Msa0658810:intron | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4_3:68951876-68951895 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4_3:68952029-68952048 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4_3:68952030-68952049 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4_3:68952119-68952138 | None:intergenic | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4_3:68952120-68952139 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4_3:68952207-68952226 | None:intergenic | 20.0% |
| !! | CCAAAAAACAAAATAATGAA+AGG | + | chr4_3:68952739-68952758 | None:intergenic | 20.0% |
| !!! | CCTTTCATTATTTTGTTTTT+TGG | - | chr4_3:68952736-68952755 | Msa0658810:intron | 20.0% |
| !!! | ATATAAGGTTGAATGTTTTA+AGG | + | chr4_3:68953253-68953272 | None:intergenic | 20.0% |
| !!! | TAAAAAATTATGATTTGTGC+AGG | + | chr4_3:68953737-68953756 | None:intergenic | 20.0% |
| !!! | TGTATGTTGCTTATTATTTT+TGG | - | chr4_3:68953823-68953842 | Msa0658810:intron | 20.0% |
| !!! | TTGTTGTTCATTAGAATTAA+AGG | - | chr4_3:68954077-68954096 | Msa0658810:CDS | 20.0% |
| !! | TGTTGTTCATTAGAATTAAA+GGG | - | chr4_3:68954078-68954097 | Msa0658810:CDS | 20.0% |
| ! | AATTGAAACAGAAAGAAAGA+GGG | + | chr4_3:68950400-68950419 | None:intergenic | 25.0% |
| ! | AAATTGAAACAGAAAGAAAG+AGG | + | chr4_3:68950401-68950420 | None:intergenic | 25.0% |
| ! | AAACACGAAAAGATTAAAAC+AGG | + | chr4_3:68950424-68950443 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4_3:68950454-68950473 | None:intergenic | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4_3:68950639-68950658 | Msa0658810:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4_3:68950640-68950659 | Msa0658810:intron | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4_3:68951055-68951074 | Msa0658810:intron | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4_3:68951211-68951230 | Msa0658810:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4_3:68951877-68951896 | None:intergenic | 25.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4_3:68951897-68951916 | Msa0658810:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4_3:68951984-68952003 | Msa0658810:intron | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4_3:68952208-68952227 | None:intergenic | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4_3:68952355-68952374 | Msa0658810:intron | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4_3:68952356-68952375 | Msa0658810:intron | 25.0% |
| !!! | GGTTTTGAAGATTTTCTAAA+TGG | - | chr4_3:68952701-68952720 | Msa0658810:intron | 25.0% |
| !!! | CTATTGATCTTTGAAACATT+CGG | - | chr4_3:68952845-68952864 | Msa0658810:intron | 25.0% |
| ! | ACTAGTTAAGGAAACAAAAA+AGG | - | chr4_3:68952991-68953010 | Msa0658810:intron | 25.0% |
| ! | AACTCTTACTCTATTAATAG+TGG | - | chr4_3:68953128-68953147 | Msa0658810:intron | 25.0% |
| ! | ATAATAAAGTTGAACCAAAC+AGG | + | chr4_3:68953194-68953213 | None:intergenic | 25.0% |
| ! | TATTATGCATAACTAAGCTT+TGG | - | chr4_3:68953208-68953227 | Msa0658810:intron | 25.0% |
| !! | ATATAGGAGTAAGATGTTTT+TGG | - | chr4_3:68953280-68953299 | Msa0658810:intron | 25.0% |
| ! | ACAATCATCTCAAAACAAAA+AGG | + | chr4_3:68953323-68953342 | None:intergenic | 25.0% |
| !!! | AGCTTTATTGTGATTATGAT+GGG | - | chr4_3:68953411-68953430 | Msa0658810:intron | 25.0% |
| ! | GTATCATTATTAAGATTCCA+AGG | - | chr4_3:68953457-68953476 | Msa0658810:intron | 25.0% |
| !!! | CAGGCTATATATAACTTTTT+TGG | + | chr4_3:68953718-68953737 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTAGCTATTGGAT+TGG | - | chr4_3:68953753-68953772 | Msa0658810:CDS | 25.0% |
| !! | AGCACATAATCATGTATTTT+AGG | - | chr4_3:68954239-68954258 | Msa0658810:five_prime_UTR | 25.0% |
| !!! | ATTTCCAGGGTTTTGAATTT+AGG | - | chr4_3:68950503-68950522 | Msa0658810:CDS | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4_3:68950510-68950529 | None:intergenic | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4_3:68950653-68950672 | Msa0658810:intron | 30.0% |
| ACTCACTACTAATACAAACA+AGG | + | chr4_3:68950854-68950873 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4_3:68950867-68950886 | Msa0658810:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4_3:68950871-68950890 | Msa0658810:intron | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4_3:68951001-68951020 | Msa0658810:intron | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4_3:68951054-68951073 | Msa0658810:intron | 30.0% | |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4_3:68951184-68951203 | None:intergenic | 30.0% |
| CGAACACATTTCTTCATAAT+CGG | + | chr4_3:68951604-68951623 | None:intergenic | 30.0% | |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4_3:68951990-68952009 | Msa0658810:intron | 30.0% |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4_3:68952148-68952167 | Msa0658810:intron | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4_3:68952157-68952176 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4_3:68952154-68952173 | Msa0658810:intron | 30.0% | |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4_3:68952241-68952260 | None:intergenic | 30.0% |
| GACTGAAATTAACATATGGA+TGG | + | chr4_3:68952288-68952307 | None:intergenic | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4_3:68952290-68952309 | Msa0658810:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4_3:68952291-68952310 | Msa0658810:intron | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4_3:68952341-68952360 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4_3:68952346-68952365 | None:intergenic | 30.0% | |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4_3:68952362-68952381 | Msa0658810:intron | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4_3:68952363-68952382 | Msa0658810:intron | 30.0% |
| TACAAGGAACAATGGTAATA+TGG | + | chr4_3:68952604-68952623 | None:intergenic | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4_3:68952603-68952622 | Msa0658810:intron | 30.0% | |
| ! | TTACTGTTCTTGTTTCCTTA+AGG | - | chr4_3:68953052-68953071 | Msa0658810:intron | 30.0% |
| ! | TACTGTTCTTGTTTCCTTAA+GGG | - | chr4_3:68953053-68953072 | Msa0658810:intron | 30.0% |
| ! | GTTAGAATTGTTTTCCTGTT+TGG | - | chr4_3:68953177-68953196 | Msa0658810:intron | 30.0% |
| TCTCAAAACAAAAAGGAACT+TGG | + | chr4_3:68953316-68953335 | None:intergenic | 30.0% | |
| AACTACAATCTGATAGATAC+CGG | + | chr4_3:68953371-68953390 | None:intergenic | 30.0% | |
| !! | GAGCTTTATTGTGATTATGA+TGG | - | chr4_3:68953410-68953429 | Msa0658810:intron | 30.0% |
| ! | GCTTTATTGTGATTATGATG+GGG | - | chr4_3:68953412-68953431 | Msa0658810:intron | 30.0% |
| TACAAATGGAACATAATTGC+AGG | + | chr4_3:68953440-68953459 | None:intergenic | 30.0% | |
| ! | ACACTTTAAATTGATAACCG+TGG | - | chr4_3:68953490-68953509 | Msa0658810:intron | 30.0% |
| !! | CTAGCGTTAATATTTTAAGC+AGG | - | chr4_3:68953673-68953692 | Msa0658810:intron | 30.0% |
| CGCAATCTTTAACTATATCA+TGG | + | chr4_3:68953799-68953818 | None:intergenic | 30.0% | |
| !!! | GCTTATTATTTTTGGCTCAT+TGG | - | chr4_3:68953831-68953850 | Msa0658810:intron | 30.0% |
| AACATTAACAACGTTGAGAA+AGG | + | chr4_3:68953895-68953914 | None:intergenic | 30.0% | |
| TATATAATACTTGGGTACAC+TGG | + | chr4_3:68954003-68954022 | None:intergenic | 30.0% | |
| CACAAGTGTGCAATTAAATA+TGG | + | chr4_3:68954112-68954131 | None:intergenic | 30.0% | |
| CACAAGTGTGCAATTAAATA+TGG | + | chr4_3:68954112-68954131 | None:intergenic | 30.0% | |
| ATTTATAGCATCCGAAACAT+AGG | + | chr4_3:68954182-68954201 | None:intergenic | 30.0% | |
| TTCGGATGCTATAAATGTTA+CGG | - | chr4_3:68954186-68954205 | Msa0658810:exon | 30.0% | |
| ATGATTATGTGCTACAAAAG+AGG | + | chr4_3:68954232-68954251 | None:intergenic | 30.0% | |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4_3:68950388-68950407 | None:intergenic | 35.0% | |
| ! | TTTTGATGTTAGCGATTTCC+AGG | - | chr4_3:68950489-68950508 | Msa0658810:CDS | 35.0% |
| TTTGATGTTAGCGATTTCCA+GGG | - | chr4_3:68950490-68950509 | Msa0658810:CDS | 35.0% | |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4_3:68950658-68950677 | Msa0658810:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4_3:68950659-68950678 | Msa0658810:intron | 35.0% |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4_3:68950705-68950724 | Msa0658810:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4_3:68950754-68950773 | Msa0658810:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4_3:68950759-68950778 | Msa0658810:intron | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4_3:68950897-68950916 | Msa0658810:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4_3:68950898-68950917 | Msa0658810:intron | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4_3:68950906-68950925 | Msa0658810:intron | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4_3:68951006-68951025 | Msa0658810:intron | 35.0% | |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4_3:68951041-68951060 | None:intergenic | 35.0% |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4_3:68951040-68951059 | Msa0658810:intron | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4_3:68951277-68951296 | None:intergenic | 35.0% | |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4_3:68951396-68951415 | None:intergenic | 35.0% |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4_3:68951526-68951545 | None:intergenic | 35.0% | |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4_3:68951691-68951710 | None:intergenic | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4_3:68951688-68951707 | Msa0658810:intron | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4_3:68951965-68951984 | None:intergenic | 35.0% |
| ATATGGGAAACCATATCCAA+CGG | + | chr4_3:68952103-68952122 | None:intergenic | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4_3:68952252-68952271 | None:intergenic | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4_3:68952292-68952311 | None:intergenic | 35.0% | |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4_3:68952371-68952390 | Msa0658810:intron | 35.0% |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4_3:68952406-68952425 | Msa0658810:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4_3:68952505-68952524 | None:intergenic | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4_3:68952560-68952579 | Msa0658810:intron | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4_3:68952644-68952663 | Msa0658810:intron | 35.0% | |
| TCATTCAGCAAAAGAAGCAA+CGG | + | chr4_3:68952941-68952960 | None:intergenic | 35.0% | |
| AATGTTAACTAGTGCCCTTA+AGG | + | chr4_3:68953070-68953089 | None:intergenic | 35.0% | |
| AACCCCAATTATATCAAGCA+GGG | + | chr4_3:68953155-68953174 | None:intergenic | 35.0% | |
| TAACCCCAATTATATCAAGC+AGG | + | chr4_3:68953156-68953175 | None:intergenic | 35.0% | |
| ! | AAAGTGTCATGTAAAGTCCT+TGG | + | chr4_3:68953477-68953496 | None:intergenic | 35.0% |
| !! | TATGTTAGACTCTGAAACCA+CGG | + | chr4_3:68953510-68953529 | None:intergenic | 35.0% |
| CATTAGAATTAAAGGGTCCA+TGG | - | chr4_3:68954085-68954104 | Msa0658810:CDS | 35.0% | |
| GTGCAATTAAATATGGTCCA+TGG | + | chr4_3:68954105-68954124 | None:intergenic | 35.0% | |
| ACTTGTGTTTGCCTATGTTT+CGG | - | chr4_3:68954125-68954144 | Msa0658810:CDS | 35.0% | |
| AATATGGCAATCCGAAACAT+AGG | + | chr4_3:68954139-68954158 | None:intergenic | 35.0% | |
| ACTTGTGTTTGCCTATGTTT+CGG | - | chr4_3:68954125-68954144 | Msa0658810:CDS | 35.0% | |
| TCGGATGCTATAAATGTTAC+GGG | - | chr4_3:68954187-68954206 | Msa0658810:exon | 35.0% | |
| !! | AGAGGTATGCGGTTTTTATA+TGG | + | chr4_3:68954214-68954233 | None:intergenic | 35.0% |
| ! | CTTTCAGTATCGAGTTTCAG+TGG | + | chr4_3:68950205-68950224 | None:intergenic | 40.0% |
| TCGAAACACAGAAATCGACA+TGG | - | chr4_3:68950244-68950263 | Msa0658810:three_prime_UTR | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4_3:68950278-68950297 | Msa0658810:three_prime_UTR | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4_3:68950370-68950389 | None:intergenic | 40.0% | |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4_3:68950660-68950679 | Msa0658810:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4_3:68950665-68950684 | Msa0658810:intron | 40.0% |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4_3:68950682-68950701 | Msa0658810:intron | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4_3:68950760-68950779 | Msa0658810:intron | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4_3:68950899-68950918 | Msa0658810:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4_3:68950917-68950936 | Msa0658810:intron | 40.0% | |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4_3:68951029-68951048 | Msa0658810:intron | 40.0% |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4_3:68951068-68951087 | Msa0658810:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4_3:68951214-68951233 | Msa0658810:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4_3:68951273-68951292 | None:intergenic | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4_3:68951283-68951302 | None:intergenic | 40.0% | |
| GTGTTCGAATCAACATGCTT+AGG | - | chr4_3:68951617-68951636 | Msa0658810:intron | 40.0% | |
| TTCGAATCAACATGCTTAGG+TGG | - | chr4_3:68951620-68951639 | Msa0658810:intron | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4_3:68952277-68952296 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4_3:68952278-68952297 | None:intergenic | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4_3:68952296-68952315 | Msa0658810:intron | 40.0% | |
| AAACAGCATATGACCAAACC+CGG | + | chr4_3:68952312-68952331 | None:intergenic | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4_3:68952468-68952487 | Msa0658810:intron | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4_3:68952641-68952660 | None:intergenic | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4_3:68952643-68952662 | Msa0658810:intron | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4_3:68952680-68952699 | Msa0658810:intron | 40.0% | |
| GTCATGCAAGACACTAGTTA+AGG | - | chr4_3:68952979-68952998 | Msa0658810:intron | 40.0% | |
| TGGTCCCTGCTTGATATAAT+TGG | - | chr4_3:68953148-68953167 | Msa0658810:intron | 40.0% | |
| GGTCCCTGCTTGATATAATT+GGG | - | chr4_3:68953149-68953168 | Msa0658810:intron | 40.0% | |
| GTCCCTGCTTGATATAATTG+GGG | - | chr4_3:68953150-68953169 | Msa0658810:intron | 40.0% | |
| ATTGTGTCAGACTTCAGATC+AGG | - | chr4_3:68953338-68953357 | Msa0658810:intron | 40.0% | |
| !! | CTTCAGATCAGGTATTGAAC+CGG | - | chr4_3:68953349-68953368 | Msa0658810:intron | 40.0% |
| !! | ATTGGTTCTGTCGTGAACTA+GGG | - | chr4_3:68953771-68953790 | Msa0658810:CDS | 40.0% |
| !!! | ATTTTTGGCTCATTGGCATG+TGG | - | chr4_3:68953838-68953857 | Msa0658810:intron | 40.0% |
| !! | ATGTGGCACTTTGTTGTTGT+TGG | - | chr4_3:68953855-68953874 | Msa0658810:intron | 40.0% |
| GAAAAGTCTCTGATTCACGA+GGG | + | chr4_3:68953927-68953946 | None:intergenic | 40.0% | |
| ! | CTCGTGAATCAGAGACTTTT+CGG | - | chr4_3:68953926-68953945 | Msa0658810:intron | 40.0% |
| CGGATGCTATAAATGTTACG+GGG | - | chr4_3:68954188-68954207 | Msa0658810:exon | 40.0% | |
| ! | TGTGCTACAAAAGAGGTATG+CGG | + | chr4_3:68954225-68954244 | None:intergenic | 40.0% |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4_3:68950308-68950327 | Msa0658810:three_prime_UTR | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4_3:68950315-68950334 | None:intergenic | 45.0% | |
| AACGATGTCACTCTTGACAC+CGG | + | chr4_3:68950339-68950358 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4_3:68950371-68950390 | None:intergenic | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4_3:68951222-68951241 | Msa0658810:intron | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4_3:68951310-68951329 | None:intergenic | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4_3:68951314-68951333 | None:intergenic | 45.0% | |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4_3:68951312-68951331 | Msa0658810:intron | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4_3:68951313-68951332 | Msa0658810:intron | 45.0% |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4_3:68951712-68951731 | Msa0658810:intron | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4_3:68951780-68951799 | None:intergenic | 45.0% | |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4_3:68952269-68952288 | None:intergenic | 45.0% |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4_3:68952612-68952631 | None:intergenic | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4_3:68952612-68952631 | Msa0658810:intron | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4_3:68952649-68952668 | Msa0658810:intron | 45.0% | |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4_3:68952653-68952672 | None:intergenic | 45.0% |
| !! | GATTGGTTCTGTCGTGAACT+AGG | - | chr4_3:68953770-68953789 | Msa0658810:CDS | 45.0% |
| CGAAAAGTCTCTGATTCACG+AGG | + | chr4_3:68953928-68953947 | None:intergenic | 45.0% | |
| ! | ATCAGAGACTTTTCGGCCAT+TGG | - | chr4_3:68953933-68953952 | Msa0658810:intron | 45.0% |
| AGTTCGCCTTGGTCTATCTA+AGG | - | chr4_3:68953975-68953994 | Msa0658810:intron | 45.0% | |
| GTTCGCCTTGGTCTATCTAA+GGG | - | chr4_3:68953976-68953995 | Msa0658810:intron | 45.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4_3:68950281-68950300 | Msa0658810:three_prime_UTR | 50.0% | |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4_3:68950285-68950304 | None:intergenic | 50.0% |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4_3:68950310-68950329 | None:intergenic | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4_3:68950338-68950357 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4_3:68950338-68950357 | Msa0658810:three_prime_UTR | 50.0% | |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4_3:68950725-68950744 | Msa0658810:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4_3:68950728-68950747 | Msa0658810:intron | 50.0% |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4_3:68950741-68950760 | None:intergenic | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4_3:68950739-68950758 | Msa0658810:intron | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4_3:68951296-68951315 | Msa0658810:intron | 50.0% | |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4_3:68951304-68951323 | None:intergenic | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4_3:68951303-68951322 | Msa0658810:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4_3:68951308-68951327 | Msa0658810:intron | 50.0% |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4_3:68951718-68951737 | Msa0658810:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4_3:68951730-68951749 | Msa0658810:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4_3:68952168-68952187 | Msa0658810:intron | 50.0% | |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4_3:68952178-68952197 | Msa0658810:intron | 50.0% |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4_3:68952219-68952238 | Msa0658810:intron | 50.0% | |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4_3:68952270-68952289 | None:intergenic | 50.0% |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4_3:68952472-68952491 | Msa0658810:intron | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4_3:68952638-68952657 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4_3:68952662-68952681 | Msa0658810:intron | 50.0% | |
| ATTCCGTGGTGCATGTCCAA+TGG | + | chr4_3:68953952-68953971 | None:intergenic | 50.0% | |
| ATTGGACATGCACCACGGAA+TGG | - | chr4_3:68953951-68953970 | Msa0658810:intron | 50.0% | |
| CTGGTCCCTTAGATAGACCA+AGG | + | chr4_3:68953984-68954003 | None:intergenic | 50.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4_3:68950317-68950336 | Msa0658810:three_prime_UTR | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4_3:68950337-68950356 | None:intergenic | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4_3:68951226-68951245 | Msa0658810:intron | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4_3:68951319-68951338 | Msa0658810:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4_3:68951337-68951356 | Msa0658810:intron | 55.0% |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4_3:68952086-68952105 | None:intergenic | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4_3:68952084-68952103 | Msa0658810:intron | 55.0% | |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4_3:68952090-68952109 | Msa0658810:intron | 55.0% | |
| CAAGGCGAACTTCCATTCCG+TGG | + | chr4_3:68953966-68953985 | None:intergenic | 55.0% | |
| CACGGAATGGAAGTTCGCCT+TGG | - | chr4_3:68953964-68953983 | Msa0658810:intron | 55.0% | |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4_3:68950295-68950314 | None:intergenic | 60.0% | |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4_3:68951324-68951343 | Msa0658810:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4_3:68951328-68951347 | Msa0658810:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4_3:68951329-68951348 | Msa0658810:intron | 60.0% |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4_3:68952476-68952495 | Msa0658810:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4_3:68952620-68952639 | None:intergenic | 60.0% |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4_3:68952620-68952639 | Msa0658810:intron | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4_3:68952621-68952640 | Msa0658810:intron | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4_3:68952622-68952641 | Msa0658810:intron | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4_3:68952631-68952650 | None:intergenic | 60.0% | |
| CGGCCATTGGACATGCACCA+CGG | - | chr4_3:68953946-68953965 | Msa0658810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 68950164 | 68954301 | 68950164 | ID=Msa0658810;Name=Msa0658810 |
| chr4_3 | mRNA | 68950164 | 68954301 | 68950164 | ID=Msa0658810-mRNA-1;Parent=Msa0658810;Name=Msa0658810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|0.66|1|4|278|142 |
| chr4_3 | exon | 68950164 | 68950542 | 68950164 | ID=Msa0658810-mRNA-1:exon:20105;Parent=Msa0658810-mRNA-1 |
| chr4_3 | exon | 68951743 | 68951840 | 68951743 | ID=Msa0658810-mRNA-1:exon:20104;Parent=Msa0658810-mRNA-1 |
| chr4_3 | exon | 68953690 | 68953790 | 68953690 | ID=Msa0658810-mRNA-1:exon:20103;Parent=Msa0658810-mRNA-1 |
| chr4_3 | exon | 68954074 | 68954301 | 68954074 | ID=Msa0658810-mRNA-1:exon:20102;Parent=Msa0658810-mRNA-1 |
| chr4_3 | five_prime_UTR | 68954203 | 68954301 | 68954203 | ID=Msa0658810-mRNA-1:five_prime_utr;Parent=Msa0658810-mRNA-1 |
| chr4_3 | CDS | 68954074 | 68954202 | 68954074 | ID=Msa0658810-mRNA-1:cds;Parent=Msa0658810-mRNA-1 |
| chr4_3 | CDS | 68953690 | 68953790 | 68953690 | ID=Msa0658810-mRNA-1:cds;Parent=Msa0658810-mRNA-1 |
| chr4_3 | CDS | 68951743 | 68951840 | 68951743 | ID=Msa0658810-mRNA-1:cds;Parent=Msa0658810-mRNA-1 |
| chr4_3 | CDS | 68950442 | 68950542 | 68950442 | ID=Msa0658810-mRNA-1:cds;Parent=Msa0658810-mRNA-1 |
| chr4_3 | three_prime_UTR | 68950164 | 68950441 | 68950164 | ID=Msa0658810-mRNA-1:three_prime_utr;Parent=Msa0658810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
