Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659170 | XP_024629648.1 | 88.933 | 253 | 15 | 1 | 1 | 240 | 1 | 253 | 1.03e-158 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659170 | sp|Q8VWK4|TRB1_ARATH | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.65e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0659170 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659170 | Msa0705160 | 0.969299 | 6.411184e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659170 | MtrunA17_Chr2g0293381 | 61.694 | 248 | 73 | 2 | 1 | 235 | 1 | 239 | 1.53e-100 | 296 |
| Msa0659170 | MtrunA17_Chr8g0384671 | 62.602 | 246 | 72 | 4 | 1 | 235 | 1 | 237 | 3.39e-99 | 293 |
| Msa0659170 | MtrunA17_Chr8g0383821 | 92.857 | 112 | 8 | 0 | 1 | 112 | 1 | 112 | 1.84e-73 | 221 |
| Msa0659170 | MtrunA17_Chr4g0054131 | 43.131 | 313 | 140 | 7 | 1 | 286 | 1 | 302 | 1.47e-48 | 163 |
| Msa0659170 | MtrunA17_Chr5g0401061 | 44.000 | 300 | 147 | 4 | 1 | 289 | 1 | 290 | 4.18e-48 | 162 |
| Msa0659170 | MtrunA17_Chr8g0383841 | 89.706 | 68 | 7 | 0 | 173 | 240 | 1 | 68 | 5.45e-35 | 122 |
| Msa0659170 | MtrunA17_Chr1g0195251 | 51.969 | 127 | 49 | 3 | 112 | 238 | 295 | 409 | 1.03e-31 | 122 |
| Msa0659170 | MtrunA17_Chr2g0329921 | 33.482 | 224 | 81 | 6 | 1 | 174 | 1 | 206 | 3.05e-27 | 107 |
| Msa0659170 | MtrunA17_Chr8g0342871 | 31.250 | 304 | 156 | 9 | 1 | 283 | 1 | 272 | 4.98e-27 | 106 |
| Msa0659170 | MtrunA17_Chr1g0166681 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 2.91e-25 | 99.8 |
| Msa0659170 | MtrunA17_Chr1g0195261 | 74.000 | 50 | 13 | 0 | 1 | 50 | 1 | 50 | 3.58e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659170 | AT1G49950.3 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0659170 | AT1G49950.1 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0659170 | AT1G49950.2 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0659170 | AT5G67580.2 | 41.722 | 302 | 149 | 6 | 1 | 286 | 1 | 291 | 1.67e-42 | 148 |
| Msa0659170 | AT5G67580.1 | 41.722 | 302 | 149 | 6 | 1 | 286 | 1 | 291 | 1.67e-42 | 148 |
| Msa0659170 | AT3G49850.1 | 36.239 | 218 | 126 | 2 | 1 | 206 | 1 | 217 | 2.17e-40 | 142 |
| Msa0659170 | AT3G49850.2 | 36.239 | 218 | 126 | 2 | 1 | 206 | 1 | 217 | 2.17e-40 | 142 |
| Msa0659170 | AT1G72740.2 | 34.673 | 199 | 118 | 3 | 1 | 188 | 1 | 198 | 2.06e-29 | 113 |
| Msa0659170 | AT1G72740.1 | 36.313 | 179 | 103 | 2 | 1 | 168 | 1 | 179 | 7.33e-28 | 109 |
| Msa0659170 | AT1G17520.1 | 36.316 | 190 | 99 | 3 | 1 | 170 | 1 | 188 | 6.81e-25 | 101 |
| Msa0659170 | AT1G17520.4 | 35.417 | 192 | 102 | 3 | 1 | 172 | 1 | 190 | 2.28e-24 | 100 |
| Msa0659170 | AT1G17520.2 | 36.649 | 191 | 98 | 4 | 1 | 170 | 1 | 189 | 5.14e-24 | 99.4 |
| Msa0659170 | AT1G17520.3 | 35.751 | 193 | 101 | 4 | 1 | 172 | 1 | 191 | 1.94e-23 | 97.4 |
Find 73 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATTGCTTCTTTCATTA+AGG | 0.194532 | 4_3:-69473908 | Msa0659170:intron |
| AAACCGACCCATGTTATTAT+TGG | 0.212298 | 4_3:-69471464 | Msa0659170:CDS |
| ACTCTCAGCTAGCAATAAAA+AGG | 0.232134 | 4_3:-69474984 | Msa0659170:CDS |
| TAGATATTGCTTCCACTATA+AGG | 0.286103 | 4_3:+69473962 | None:intergenic |
| TGTGGGTTGGATAGGATAAA+TGG | 0.326262 | 4_3:-69475050 | Msa0659170:intron |
| TGAAGCATGGCGTAGGTAAA+TGG | 0.346059 | 4_3:-69475250 | Msa0659170:CDS |
| TTCCTCTATCTGAATATGCT+TGG | 0.349369 | 4_3:+69471488 | None:intergenic |
| AAATAAGCTGTCAGCAAAAC+TGG | 0.353881 | 4_3:-69472476 | Msa0659170:CDS |
| TCCTCTATCTGAATATGCTT+GGG | 0.366075 | 4_3:+69471489 | None:intergenic |
| GGCTGAGATAGACTTGGAAT+TGG | 0.370284 | 4_3:-69471356 | Msa0659170:CDS |
| CCAATTGGTTCAACTCATAA+TGG | 0.373242 | 4_3:-69476153 | Msa0659170:five_prime_UTR |
| AAGAATGATTTCTCTCCAAT+TGG | 0.402800 | 4_3:-69476168 | Msa0659170:five_prime_UTR |
| CTATTAAATCTGACAGGGGT+GGG | 0.403434 | 4_3:-69471423 | Msa0659170:CDS |
| GAGGAAGCGGCTCTCAAAGC+TGG | 0.427705 | 4_3:-69475278 | Msa0659170:CDS |
| ACGGAGTCGTCACGCTGTTC+TGG | 0.440395 | 4_3:+69474946 | None:intergenic |
| CCATTATGAGTTGAACCAAT+TGG | 0.445687 | 4_3:+69476153 | None:intergenic |
| TATTAAATCTGACAGGGGTG+GGG | 0.448513 | 4_3:-69471422 | Msa0659170:CDS |
| AATCTGCCGGTGCGCAGTAT+TGG | 0.455578 | 4_3:+69472503 | None:intergenic |
| ATTAAATCTGACAGGGGTGG+GGG | 0.463232 | 4_3:-69471421 | Msa0659170:CDS |
| AAGCCTCTATTAAATCTGAC+AGG | 0.463302 | 4_3:-69471429 | Msa0659170:CDS |
| AATATGAGTCTGAAGGCAAA+TGG | 0.474909 | 4_3:-69475024 | Msa0659170:CDS |
| ACCCAAGCATATTCAGATAG+AGG | 0.477513 | 4_3:-69471490 | Msa0659170:CDS |
| ATAATGGTGGCCAGCCAGCC+AGG | 0.479473 | 4_3:-69476137 | Msa0659170:intron |
| AGGCAAATGGATCATCCTCC+GGG | 0.485206 | 4_3:-69475011 | Msa0659170:CDS |
| CGCCATGGCAGAAGCTGAAG+AGG | 0.487462 | 4_3:-69471263 | Msa0659170:CDS |
| ACCCCTGTCAGATTTAATAG+AGG | 0.496957 | 4_3:+69471426 | None:intergenic |
| CCTCCCTTCCAATAATAACA+TGG | 0.497696 | 4_3:+69471456 | None:intergenic |
| TGCCTCTTCAGCTTCTGCCA+TGG | 0.502504 | 4_3:+69471261 | None:intergenic |
| AAGGCAAATGGATCATCCTC+CGG | 0.503120 | 4_3:-69475012 | Msa0659170:CDS |
| CAGATTGGACAACCTTATAG+TGG | 0.503998 | 4_3:-69473974 | Msa0659170:CDS |
| AAAATTCATACCTGGCTGGC+TGG | 0.506502 | 4_3:+69476127 | None:intergenic |
| CTGGTGGATCTTGTATCTAG+TGG | 0.509226 | 4_3:-69472457 | Msa0659170:CDS |
| TTATATTTCAGGTGAAACAT+AGG | 0.516350 | 4_3:-69471528 | Msa0659170:intron |
| CGACCCATGTTATTATTGGA+AGG | 0.524027 | 4_3:-69471460 | Msa0659170:CDS |
| ATCTAGTGGAAAACTGATCA+AGG | 0.537966 | 4_3:-69472443 | Msa0659170:intron |
| AAAGTCCATGTCTTTACAAG+AGG | 0.539777 | 4_3:-69471326 | Msa0659170:CDS |
| TGCTGAAGCAGAAGCCGCCA+TGG | 0.540719 | 4_3:-69471278 | Msa0659170:CDS |
| AGAGGCAACAAAGGAGGCAG+AGG | 0.547850 | 4_3:-69471245 | Msa0659170:CDS |
| AGAAGCTGAAGAGGCAACAA+AGG | 0.557008 | 4_3:-69471254 | Msa0659170:CDS |
| CCGCTCAAATATCGATCTCA+AGG | 0.560055 | 4_3:-69475183 | Msa0659170:intron |
| AAGAAAGGCTGAGATAGACT+TGG | 0.566957 | 4_3:-69471362 | Msa0659170:CDS |
| CTCTTCAGCTTCTGCCATGG+CGG | 0.568303 | 4_3:+69471264 | None:intergenic |
| ATGGTCATCAGAAGAGGAAG+CGG | 0.577986 | 4_3:-69475291 | Msa0659170:CDS |
| ACAGAAATGGTCATCAGAAG+AGG | 0.578108 | 4_3:-69475297 | Msa0659170:CDS |
| AGCAATATCTAGCTTGAATG+AGG | 0.580943 | 4_3:-69473950 | Msa0659170:CDS |
| GACCCATGTTATTATTGGAA+GGG | 0.581327 | 4_3:-69471459 | Msa0659170:CDS |
| CTATCTGAATATGCTTGGGT+AGG | 0.584721 | 4_3:+69471493 | None:intergenic |
| ATGGAGAAATATGAGTCTGA+AGG | 0.599241 | 4_3:-69475031 | Msa0659170:CDS |
| TGGGTGCTACTAGACAGAAA+TGG | 0.601772 | 4_3:-69475310 | Msa0659170:CDS |
| AGCCTCTATTAAATCTGACA+GGG | 0.601960 | 4_3:-69471428 | Msa0659170:CDS |
| CTTCCAATAATAACATGGGT+CGG | 0.603083 | 4_3:+69471461 | None:intergenic |
| CCATGTTATTATTGGAAGGG+AGG | 0.603196 | 4_3:-69471456 | Msa0659170:CDS |
| GGAGTTGTGAAGCATGGCGT+AGG | 0.603718 | 4_3:-69475257 | Msa0659170:CDS |
| TGCTAGCTGAGAGTTGTCCC+CGG | 0.606787 | 4_3:+69474993 | None:intergenic |
| CTCCCTTCCAATAATAACAT+GGG | 0.607660 | 4_3:+69471457 | None:intergenic |
| TCTATTAAATCTGACAGGGG+TGG | 0.615717 | 4_3:-69471424 | Msa0659170:CDS |
| AAAGCTGGAGTTGTGAAGCA+TGG | 0.620365 | 4_3:-69475263 | Msa0659170:CDS |
| AGCTGAAGAGGCAACAAAGG+AGG | 0.624067 | 4_3:-69471251 | Msa0659170:CDS |
| TAAGCTGTCAGCAAAACTGG+TGG | 0.625095 | 4_3:-69472473 | Msa0659170:CDS |
| AGAAGCAGAAGCTGATGCAG+CGG | 0.627843 | 4_3:-69471218 | Msa0659170:CDS |
| TACAACACATGGTTAAACTC+AGG | 0.630999 | 4_3:+69475209 | None:intergenic |
| CCTTGAGATCGATATTTGAG+CGG | 0.641849 | 4_3:+69475183 | None:intergenic |
| TCTAGCTTGAATGAGGTCGA+TGG | 0.649394 | 4_3:-69473943 | Msa0659170:CDS |
| GTAGAACCAATACTGCGCAC+CGG | 0.653755 | 4_3:-69472509 | Msa0659170:intron |
| ATTGGTTCAACTCATAATGG+TGG | 0.653978 | 4_3:-69476150 | Msa0659170:five_prime_UTR |
| GATTACCTCTTGTAAAGACA+TGG | 0.659824 | 4_3:+69471321 | None:intergenic |
| GCCTCTATTAAATCTGACAG+GGG | 0.668262 | 4_3:-69471427 | Msa0659170:CDS |
| TAAATGGAGTAAGATACTCA+AGG | 0.669197 | 4_3:-69475234 | Msa0659170:CDS |
| AGTAACAAGATTTACAGCCA+CGG | 0.669902 | 4_3:+69474927 | None:intergenic |
| TTGAGCGGATATACAACACA+TGG | 0.677687 | 4_3:+69475198 | None:intergenic |
| AGAACAGCGTGACGACTCCG+TGG | 0.703510 | 4_3:-69474944 | Msa0659170:CDS |
| TAGCTGAGAGTTGTCCCCGG+AGG | 0.710409 | 4_3:+69474996 | None:intergenic |
| GGCAAATGGATCATCCTCCG+GGG | 0.731603 | 4_3:-69475010 | Msa0659170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTTATAGCATTA+GGG | - | chr4_3:69471392-69471411 | Msa0659170:CDS | 10.0% |
| !!! | TGCTTTTAAATTATTAAATT+TGG | - | chr4_3:69473524-69473543 | Msa0659170:intron | 10.0% |
| !! | AAAAAAAAGAAAAAAAAAAG+TGG | + | chr4_3:69475500-69475519 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTTCCTTTT+TGG | + | chr4_3:69471366-69471385 | None:intergenic | 15.0% |
| !!! | CTAATTTTATTTATAGCATT+AGG | - | chr4_3:69471391-69471410 | Msa0659170:CDS | 15.0% |
| !! | ATTTGTATAATTTATGATGT+TGG | - | chr4_3:69472004-69472023 | Msa0659170:intron | 15.0% |
| !! | AATACATTATTATGTGTAAA+GGG | + | chr4_3:69472258-69472277 | None:intergenic | 15.0% |
| !! | ATAATGTATTGAATAAATGT+TGG | - | chr4_3:69472268-69472287 | Msa0659170:intron | 15.0% |
| !! | TAAACAAAACAAAAAATATG+GGG | + | chr4_3:69472565-69472584 | None:intergenic | 15.0% |
| !! | CTAAACAAAACAAAAAATAT+GGG | + | chr4_3:69472566-69472585 | None:intergenic | 15.0% |
| !! | ACTAAACAAAACAAAAAATA+TGG | + | chr4_3:69472567-69472586 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTTGTTTAGTA+TGG | - | chr4_3:69472568-69472587 | Msa0659170:intron | 15.0% |
| !! | TAGTATGGTAATTTATTTAA+TGG | - | chr4_3:69472583-69472602 | Msa0659170:intron | 15.0% |
| !! | TCAAAATGAAAAATTTATCT+TGG | - | chr4_3:69472645-69472664 | Msa0659170:intron | 15.0% |
| !! | TATAAGATGCAATTAAATAA+GGG | + | chr4_3:69472766-69472785 | None:intergenic | 15.0% |
| !! | AAATTAAACAAATAACATCA+TGG | + | chr4_3:69473669-69473688 | None:intergenic | 15.0% |
| !!! | ATTTTGATTAGTACAAAAAT+TGG | - | chr4_3:69473685-69473704 | Msa0659170:intron | 15.0% |
| !! | TTCTTCATTTATATATATCA+AGG | - | chr4_3:69474035-69474054 | Msa0659170:intron | 15.0% |
| !!! | GTTTTTGTTCTTTATATTTT+AGG | - | chr4_3:69475712-69475731 | Msa0659170:intron | 15.0% |
| !!! | AAGTTTATTTTATAAGCGTT+TGG | + | chr4_3:69471295-69471314 | None:intergenic | 20.0% |
| !!! | AATAGCATTGATTAAATAGA+GGG | - | chr4_3:69471340-69471359 | Msa0659170:CDS | 20.0% |
| !! | ACTTGTTTAGGTAAAAAATA+AGG | - | chr4_3:69471723-69471742 | Msa0659170:intron | 20.0% |
| !!! | AACATATAATCACAAGTTTT+AGG | + | chr4_3:69471968-69471987 | None:intergenic | 20.0% |
| !! | AAAACTTGTGATTATATGTT+TGG | - | chr4_3:69471968-69471987 | Msa0659170:intron | 20.0% |
| !! | CAATACATTATTATGTGTAA+AGG | + | chr4_3:69472259-69472278 | None:intergenic | 20.0% |
| !!! | ACTTTTTAACAAATGTCTTT+GGG | + | chr4_3:69472625-69472644 | None:intergenic | 20.0% |
| !!! | AACTTTTTAACAAATGTCTT+TGG | + | chr4_3:69472626-69472645 | None:intergenic | 20.0% |
| !! | CTATAAGATGCAATTAAATA+AGG | + | chr4_3:69472767-69472786 | None:intergenic | 20.0% |
| !! | ATATAATTTAATTGTGCTAC+CGG | - | chr4_3:69473184-69473203 | Msa0659170:intron | 20.0% |
| !! | AAGGTATAATTATGATTTCT+AGG | - | chr4_3:69473483-69473502 | Msa0659170:intron | 20.0% |
| !!! | TAAATGTTTGACTTAGTATT+TGG | + | chr4_3:69475249-69475268 | None:intergenic | 20.0% |
| !! | AGATATTAGAAGTTCTATTT+AGG | + | chr4_3:69475456-69475475 | None:intergenic | 20.0% |
| !! | AAATAGAACTTCTAATATCT+AGG | - | chr4_3:69475456-69475475 | Msa0659170:intron | 20.0% |
| !!! | AATCTATGTCATACTTTTTA+GGG | + | chr4_3:69475983-69476002 | None:intergenic | 20.0% |
| !!! | TAATCTATGTCATACTTTTT+AGG | + | chr4_3:69475984-69476003 | None:intergenic | 20.0% |
| !! | CATAGATTATCAAAAAAGAA+AGG | - | chr4_3:69475995-69476014 | Msa0659170:intron | 20.0% |
| !! | TTTTCATCACAATTACTTTC+TGG | - | chr4_3:69471265-69471284 | Msa0659170:CDS | 25.0% |
| ! | TTTCATCACAATTACTTTCT+GGG | - | chr4_3:69471266-69471285 | Msa0659170:CDS | 25.0% |
| ! | TAAACTTGAATTTCCAAACT+TGG | - | chr4_3:69471308-69471327 | Msa0659170:CDS | 25.0% |
| !!! | CAATAGCATTGATTAAATAG+AGG | - | chr4_3:69471339-69471358 | Msa0659170:CDS | 25.0% |
| ! | AAAAATAAGGAAAAGAGATG+AGG | - | chr4_3:69471736-69471755 | Msa0659170:intron | 25.0% |
| ! | AAAATAAGGAAAAGAGATGA+GGG | - | chr4_3:69471737-69471756 | Msa0659170:intron | 25.0% |
| ! | TGAGAAAGAGTAGAATTATT+TGG | - | chr4_3:69471805-69471824 | Msa0659170:intron | 25.0% |
| ! | AAACTAAAACTTTCCTACAT+GGG | + | chr4_3:69471882-69471901 | None:intergenic | 25.0% |
| !! | TGTAGAAGAGATTGAATTTT+TGG | - | chr4_3:69472028-69472047 | Msa0659170:intron | 25.0% |
| !! | GTAGAAGAGATTGAATTTTT+GGG | - | chr4_3:69472029-69472048 | Msa0659170:intron | 25.0% |
| !!! | ATATCTGTTTTAACTTGAAG+AGG | + | chr4_3:69472501-69472520 | None:intergenic | 25.0% |
| ! | ATTTAATGGAAAATGCTAAC+AGG | - | chr4_3:69472597-69472616 | Msa0659170:intron | 25.0% |
| ! | CTAAGTTATGGATTCAAAAA+AGG | + | chr4_3:69472738-69472757 | None:intergenic | 25.0% |
| ! | ATAAACCAATAGGGATATTA+CGG | + | chr4_3:69472850-69472869 | None:intergenic | 25.0% |
| !!! | AATATCCCTATTGGTTTATT+TGG | - | chr4_3:69472851-69472870 | Msa0659170:intron | 25.0% |
| ! | CAAAACAAGAGAATGAAATT+AGG | + | chr4_3:69473287-69473306 | None:intergenic | 25.0% |
| ! | CAATCTGTATAATGTAAACA+TGG | + | chr4_3:69473385-69473404 | None:intergenic | 25.0% |
| ! | CATGTTTACATTATACAGAT+TGG | - | chr4_3:69473383-69473402 | Msa0659170:intron | 25.0% |
| ! | AACTATTGCTTCTTTCATTA+AGG | - | chr4_3:69473464-69473483 | Msa0659170:intron | 25.0% |
| ! | AAGCAGAACAAATAAAAGTT+GGG | + | chr4_3:69473509-69473528 | None:intergenic | 25.0% |
| ! | AAAGCAGAACAAATAAAAGT+TGG | + | chr4_3:69473510-69473529 | None:intergenic | 25.0% |
| ! | TAGAAGAAAATGTAAGAAGT+AGG | - | chr4_3:69473935-69473954 | Msa0659170:CDS | 25.0% |
| ! | AGAAGAAAATGTAAGAAGTA+GGG | - | chr4_3:69473936-69473955 | Msa0659170:CDS | 25.0% |
| !!! | ATGCTATTTCAACTTTCAAT+TGG | - | chr4_3:69474682-69474701 | Msa0659170:intron | 25.0% |
| !!! | TTTCACAACGTATTTTTTTG+TGG | - | chr4_3:69475033-69475052 | Msa0659170:CDS | 25.0% |
| ! | CATCAAATGATATTGAAACA+TGG | - | chr4_3:69475123-69475142 | Msa0659170:intron | 25.0% |
| !! | AAAAAAAAAAGTGGCTTGTA+AGG | + | chr4_3:69475491-69475510 | None:intergenic | 25.0% |
| ! | ATTTATTGTGAGCCATATTT+GGG | - | chr4_3:69475767-69475786 | Msa0659170:intron | 25.0% |
| ! | TCAATTAGAGATCTTACTAA+TGG | - | chr4_3:69475813-69475832 | Msa0659170:intron | 25.0% |
| ! | CAATTAGAGATCTTACTAAT+GGG | - | chr4_3:69475814-69475833 | Msa0659170:intron | 25.0% |
| !! | TTATATTTCAGGTGAAACAT+AGG | - | chr4_3:69475844-69475863 | Msa0659170:intron | 25.0% |
| ! | AAAAATCACTAAAATCACTG+CGG | - | chr4_3:69476198-69476217 | Msa0659170:five_prime_UTR | 25.0% |
| AAGAATGATTTCTCTCCAAT+TGG | - | chr4_3:69471204-69471223 | Msa0659170:CDS | 30.0% | |
| TGTGATGAAAAATTCATACC+TGG | + | chr4_3:69471256-69471275 | None:intergenic | 30.0% | |
| ! | AGGAATTTCTCAACTTGTTT+AGG | - | chr4_3:69471711-69471730 | Msa0659170:intron | 30.0% |
| !! | ATTGGATCAAGGTATTGAAA+GGG | + | chr4_3:69471845-69471864 | None:intergenic | 30.0% |
| !! | AATTGGATCAAGGTATTGAA+AGG | + | chr4_3:69471846-69471865 | None:intergenic | 30.0% |
| CAAACTAAAACTTTCCTACA+TGG | + | chr4_3:69471883-69471902 | None:intergenic | 30.0% | |
| !!! | CATGTAGGAAAGTTTTAGTT+TGG | - | chr4_3:69471881-69471900 | Msa0659170:intron | 30.0% |
| ACTTGTGATTATATGTTTGG+AGG | - | chr4_3:69471971-69471990 | Msa0659170:intron | 30.0% | |
| TAAATGGAGTAAGATACTCA+AGG | - | chr4_3:69472138-69472157 | Msa0659170:intron | 30.0% | |
| ATCTCAATGTTTGGTTATGT+GGG | - | chr4_3:69472305-69472324 | Msa0659170:intron | 30.0% | |
| TCAAGTTAAAACAGATATGC+TGG | - | chr4_3:69472503-69472522 | Msa0659170:CDS | 30.0% | |
| AACAGATATGCTGGAAATTA+AGG | - | chr4_3:69472512-69472531 | Msa0659170:intron | 30.0% | |
| ACAGATATGCTGGAAATTAA+GGG | - | chr4_3:69472513-69472532 | Msa0659170:intron | 30.0% | |
| TTCGACCAAATAAACCAATA+GGG | + | chr4_3:69472859-69472878 | None:intergenic | 30.0% | |
| TTTCGACCAAATAAACCAAT+AGG | + | chr4_3:69472860-69472879 | None:intergenic | 30.0% | |
| AAAATTATCTTCCACTTCCA+AGG | + | chr4_3:69472926-69472945 | None:intergenic | 30.0% | |
| TGAGATCTTCAAAAGATATC+CGG | - | chr4_3:69472945-69472964 | Msa0659170:intron | 30.0% | |
| TAGATATTGCTTCCACTATA+AGG | + | chr4_3:69473413-69473432 | None:intergenic | 30.0% | |
| ATTGCTTACACATGAATAGA+AGG | - | chr4_3:69474058-69474077 | Msa0659170:intron | 30.0% | |
| !!! | ATTGGTTTTTCCATCCAAAA+AGG | + | chr4_3:69474112-69474131 | None:intergenic | 30.0% |
| ATCAAAGCAATTATGGTGTA+CGG | + | chr4_3:69474421-69474440 | None:intergenic | 30.0% | |
| TGGCAAAATCAAAGCAATTA+TGG | + | chr4_3:69474428-69474447 | None:intergenic | 30.0% | |
| ATATACTAAGCTTCCATTCA+TGG | + | chr4_3:69474612-69474631 | None:intergenic | 30.0% | |
| TCAATTGGCTAAATCTTATG+TGG | - | chr4_3:69474697-69474716 | Msa0659170:intron | 30.0% | |
| AAGTTCTATAGCATTCCATT+TGG | - | chr4_3:69474758-69474777 | Msa0659170:intron | 30.0% | |
| !! | TAGAAAAGTATCCAACCAAA+TGG | + | chr4_3:69474776-69474795 | None:intergenic | 30.0% |
| !!! | AGCTTATTTTTGAAATCTGC+CGG | + | chr4_3:69474885-69474904 | None:intergenic | 30.0% |
| TATTGTATGTTTGCATGAGA+TGG | + | chr4_3:69474990-69475009 | None:intergenic | 30.0% | |
| ! | TTTTATCCAATCACCAGTAT+CGG | - | chr4_3:69475056-69475075 | Msa0659170:intron | 30.0% |
| ! | GTTTTATATTTACCGCTTCA+TGG | - | chr4_3:69475223-69475242 | Msa0659170:CDS | 30.0% |
| ! | GTCAAACATTTACTCTAAAG+AGG | - | chr4_3:69475257-69475276 | Msa0659170:CDS | 30.0% |
| CATTTATTGTGAGCCATATT+TGG | - | chr4_3:69475766-69475785 | Msa0659170:intron | 30.0% | |
| ! | CCATTATGAGTTGAACCAAT+TGG | + | chr4_3:69471222-69471241 | None:intergenic | 35.0% |
| ! | CCAATTGGTTCAACTCATAA+TGG | - | chr4_3:69471219-69471238 | Msa0659170:CDS | 35.0% |
| ! | ATTGGTTCAACTCATAATGG+TGG | - | chr4_3:69471222-69471241 | Msa0659170:CDS | 35.0% |
| ATGAAAAATTCATACCTGGC+TGG | + | chr4_3:69471252-69471271 | None:intergenic | 35.0% | |
| GATTAAATAGAGGGCCAAAA+AGG | - | chr4_3:69471349-69471368 | Msa0659170:CDS | 35.0% | |
| !! | TGCTTAGGTTTGTTGCTTTA+GGG | + | chr4_3:69471450-69471469 | None:intergenic | 35.0% |
| ACTCATTCGATCATAAGTGT+CGG | - | chr4_3:69471658-69471677 | Msa0659170:intron | 35.0% | |
| CCAAAAAAGGAATTGGATCA+AGG | + | chr4_3:69471856-69471875 | None:intergenic | 35.0% | |
| !!! | CCTTGATCCAATTCCTTTTT+TGG | - | chr4_3:69471853-69471872 | Msa0659170:intron | 35.0% |
| !!! | GTAGGAAAGTTTTAGTTTGG+CGG | - | chr4_3:69471884-69471903 | Msa0659170:intron | 35.0% |
| !!! | TAGGAAAGTTTTAGTTTGGC+GGG | - | chr4_3:69471885-69471904 | Msa0659170:intron | 35.0% |
| !!! | AATTTTTGGGTTGCTCTAGA+TGG | - | chr4_3:69472042-69472061 | Msa0659170:intron | 35.0% |
| !!! | ATTTTTGGGTTGCTCTAGAT+GGG | - | chr4_3:69472043-69472062 | Msa0659170:intron | 35.0% |
| TACAACACATGGTTAAACTC+AGG | + | chr4_3:69472166-69472185 | None:intergenic | 35.0% | |
| ! | TCAAGGTTTGCTTATGATGT+TGG | - | chr4_3:69472206-69472225 | Msa0659170:intron | 35.0% |
| ACATTGAGATCCACATTTGA+CGG | + | chr4_3:69472295-69472314 | None:intergenic | 35.0% | |
| CAAATGTGGATCTCAATGTT+TGG | - | chr4_3:69472296-69472315 | Msa0659170:intron | 35.0% | |
| GATCTCAATGTTTGGTTATG+TGG | - | chr4_3:69472304-69472323 | Msa0659170:intron | 35.0% | |
| ATGGAGAAATATGAGTCTGA+AGG | - | chr4_3:69472341-69472360 | Msa0659170:intron | 35.0% | |
| AATATGAGTCTGAAGGCAAA+TGG | - | chr4_3:69472348-69472367 | Msa0659170:intron | 35.0% | |
| ACTCTCAGCTAGCAATAAAA+AGG | - | chr4_3:69472388-69472407 | Msa0659170:intron | 35.0% | |
| CTCTCAGCTAGCAATAAAAA+GGG | - | chr4_3:69472389-69472408 | Msa0659170:intron | 35.0% | |
| AGTAACAAGATTTACAGCCA+CGG | + | chr4_3:69472448-69472467 | None:intergenic | 35.0% | |
| ! | AACCTTTTGATAGACCTTTC+CGG | + | chr4_3:69472540-69472559 | None:intergenic | 35.0% |
| ATAAGGGTCATGCTAAGTTA+TGG | + | chr4_3:69472750-69472769 | None:intergenic | 35.0% | |
| TGGTTTATTTGGTCGAAATG+CGG | - | chr4_3:69472862-69472881 | Msa0659170:intron | 35.0% | |
| !! | CGAGTTTTGTGAATTATCCT+TGG | - | chr4_3:69472906-69472925 | Msa0659170:intron | 35.0% |
| TTGTGAATTATCCTTGGAAG+TGG | - | chr4_3:69472912-69472931 | Msa0659170:intron | 35.0% | |
| GAGATCTTCAAAAGATATCC+GGG | - | chr4_3:69472946-69472965 | Msa0659170:intron | 35.0% | |
| AGATCTTCAAAAGATATCCG+GGG | - | chr4_3:69472947-69472966 | Msa0659170:intron | 35.0% | |
| TAAAGTCTCGTCTTGTGTAT+TGG | + | chr4_3:69472999-69473018 | None:intergenic | 35.0% | |
| ! | GGCTTTTTGCAAAAAGATGA+CGG | - | chr4_3:69473031-69473050 | Msa0659170:intron | 35.0% |
| ! | TATTTTCCGTGATCTGTGAT+TGG | - | chr4_3:69473120-69473139 | Msa0659170:intron | 35.0% |
| ! | ATGAACCTTGTTTGCAGAAT+AGG | - | chr4_3:69473157-69473176 | Msa0659170:intron | 35.0% |
| TATGTCCTATTCTGCAAACA+AGG | + | chr4_3:69473165-69473184 | None:intergenic | 35.0% | |
| AAGCATACACTGTCAAAATG+AGG | + | chr4_3:69473360-69473379 | None:intergenic | 35.0% | |
| ! | AGCAATATCTAGCTTGAATG+AGG | - | chr4_3:69473422-69473441 | Msa0659170:intron | 35.0% |
| AAGGTGACTACCTTGTAATA+TGG | - | chr4_3:69473746-69473765 | Msa0659170:intron | 35.0% | |
| TTACATCTATACTCACCTAG+TGG | - | chr4_3:69473824-69473843 | Msa0659170:intron | 35.0% | |
| TACATCTATACTCACCTAGT+GGG | - | chr4_3:69473825-69473844 | Msa0659170:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+GGG | + | chr4_3:69474188-69474207 | None:intergenic | 35.0% | |
| ACCTTCTACATAGAGTTCAA+AGG | + | chr4_3:69474189-69474208 | None:intergenic | 35.0% | |
| ! | AGAGCTAGTTTAGAAGAAGA+AGG | - | chr4_3:69474468-69474487 | Msa0659170:intron | 35.0% |
| TCAAGCTTCTTTGTGCAAAT+AGG | + | chr4_3:69474528-69474547 | None:intergenic | 35.0% | |
| ! | TGACTTGTGATTTCCATGAA+TGG | - | chr4_3:69474596-69474615 | Msa0659170:intron | 35.0% |
| CTTAGTATATCTTGACCCTT+TGG | - | chr4_3:69474622-69474641 | Msa0659170:intron | 35.0% | |
| TCTATAGCATTCCATTTGGT+TGG | - | chr4_3:69474762-69474781 | Msa0659170:intron | 35.0% | |
| AAATAAGCTGTCAGCAAAAC+TGG | - | chr4_3:69474896-69474915 | Msa0659170:CDS | 35.0% | |
| ATCTAGTGGAAAACTGATCA+AGG | - | chr4_3:69474929-69474948 | Msa0659170:CDS | 35.0% | |
| ACTTTACAACCCTATCCTAT+GGG | - | chr4_3:69475082-69475101 | Msa0659170:intron | 35.0% | |
| CTACATTAACCCATAGGATA+GGG | + | chr4_3:69475094-69475113 | None:intergenic | 35.0% | |
| ATGTTCCTACATTAACCCAT+AGG | + | chr4_3:69475100-69475119 | None:intergenic | 35.0% | |
| ! | CATTTACTCTAAAGAGGTAG+TGG | - | chr4_3:69475263-69475282 | Msa0659170:CDS | 35.0% |
| !! | AGAGGTAGTGGATTTGTATT+CGG | - | chr4_3:69475275-69475294 | Msa0659170:CDS | 35.0% |
| GAAAAACCAAAGTCTCACAT+TGG | - | chr4_3:69475297-69475316 | Msa0659170:CDS | 35.0% | |
| !! | TAACTTCTAAGGCTCTACTT+AGG | + | chr4_3:69475335-69475354 | None:intergenic | 35.0% |
| ! | AAAAAAAGTGGCTTGTAAGG+AGG | + | chr4_3:69475488-69475507 | None:intergenic | 35.0% |
| ATGAGAATAGCACCCAAATA+TGG | + | chr4_3:69475782-69475801 | None:intergenic | 35.0% | |
| !!! | TTGGGTGCTATTCTCATTTT+TGG | - | chr4_3:69475785-69475804 | Msa0659170:intron | 35.0% |
| ! | TGGGTTGAGCTTTATATTTC+AGG | - | chr4_3:69475833-69475852 | Msa0659170:intron | 35.0% |
| TCCTCTATCTGAATATGCTT+GGG | + | chr4_3:69475886-69475905 | None:intergenic | 35.0% | |
| TTCCTCTATCTGAATATGCT+TGG | + | chr4_3:69475887-69475906 | None:intergenic | 35.0% | |
| AAACCGACCCATGTTATTAT+TGG | - | chr4_3:69475908-69475927 | Msa0659170:intron | 35.0% | |
| CTTCCAATAATAACATGGGT+CGG | + | chr4_3:69475914-69475933 | None:intergenic | 35.0% | |
| GACCCATGTTATTATTGGAA+GGG | - | chr4_3:69475913-69475932 | Msa0659170:intron | 35.0% | |
| CTCCCTTCCAATAATAACAT+GGG | + | chr4_3:69475918-69475937 | None:intergenic | 35.0% | |
| AAGCCTCTATTAAATCTGAC+AGG | - | chr4_3:69475943-69475962 | Msa0659170:intron | 35.0% | |
| AGCCTCTATTAAATCTGACA+GGG | - | chr4_3:69475944-69475963 | Msa0659170:intron | 35.0% | |
| AAAGTCCATGTCTTTACAAG+AGG | - | chr4_3:69476046-69476065 | Msa0659170:intron | 35.0% | |
| GATTACCTCTTGTAAAGACA+TGG | + | chr4_3:69476054-69476073 | None:intergenic | 35.0% | |
| !! | CTGCTTAGGTTTGTTGCTTT+AGG | + | chr4_3:69471451-69471470 | None:intergenic | 40.0% |
| TGCGATTCTGACGCAATTTA+GGG | - | chr4_3:69471578-69471597 | Msa0659170:intron | 40.0% | |
| !!! | TAAGTGTCGGTGTTTTCTAG+AGG | - | chr4_3:69471671-69471690 | Msa0659170:intron | 40.0% |
| !! | TGTTTTCTAGAGGAGGGTAA+GGG | - | chr4_3:69471681-69471700 | Msa0659170:intron | 40.0% |
| TGGGTAGCCAAAAAAGGAAT+TGG | + | chr4_3:69471863-69471882 | None:intergenic | 40.0% | |
| !!! | AGGAAAGTTTTAGTTTGGCG+GGG | - | chr4_3:69471886-69471905 | Msa0659170:intron | 40.0% |
| ATAATAGTTCCATCTTGCCC+TGG | + | chr4_3:69471924-69471943 | None:intergenic | 40.0% | |
| ACAGAAATGGTCATCAGAAG+AGG | - | chr4_3:69472075-69472094 | Msa0659170:intron | 40.0% | |
| TTGAGCGGATATACAACACA+TGG | + | chr4_3:69472177-69472196 | None:intergenic | 40.0% | |
| CCTTGAGATCGATATTTGAG+CGG | + | chr4_3:69472192-69472211 | None:intergenic | 40.0% | |
| AAATGTTGGACCGTCAAATG+TGG | - | chr4_3:69472282-69472301 | Msa0659170:intron | 40.0% | |
| CAATGTTTGGTTATGTGGGT+TGG | - | chr4_3:69472309-69472328 | Msa0659170:intron | 40.0% | |
| !! | TTTGGTTATGTGGGTTGGAT+AGG | - | chr4_3:69472314-69472333 | Msa0659170:intron | 40.0% |
| !! | TGTGGGTTGGATAGGATAAA+TGG | - | chr4_3:69472322-69472341 | Msa0659170:intron | 40.0% |
| ! | AATAAAAAGGGTGCGTCATC+AGG | - | chr4_3:69472401-69472420 | Msa0659170:intron | 40.0% |
| TATGCTGGAAATTAAGGGTC+CGG | - | chr4_3:69472518-69472537 | Msa0659170:intron | 40.0% | |
| GGAAAGGTCTATCAAAAGGT+TGG | - | chr4_3:69472539-69472558 | Msa0659170:intron | 40.0% | |
| ATCGACCGTAATATCCCTAT+TGG | - | chr4_3:69472842-69472861 | Msa0659170:intron | 40.0% | |
| GGTTTATTTGGTCGAAATGC+GGG | - | chr4_3:69472863-69472882 | Msa0659170:intron | 40.0% | |
| CAAAACTCGATTCCACCAAA+CGG | + | chr4_3:69472895-69472914 | None:intergenic | 40.0% | |
| GATCTTCAAAAGATATCCGG+GGG | - | chr4_3:69472948-69472967 | Msa0659170:intron | 40.0% | |
| CCTAATTGAAAGACAATCGC+CGG | + | chr4_3:69473206-69473225 | None:intergenic | 40.0% | |
| CGGCGATTGTCTTTCAATTA+GGG | - | chr4_3:69473204-69473223 | Msa0659170:intron | 40.0% | |
| AAGCATACTAGCAAGGAAAC+TGG | + | chr4_3:69473263-69473282 | None:intergenic | 40.0% | |
| ATTAGGCAAGCATACTAGCA+AGG | + | chr4_3:69473270-69473289 | None:intergenic | 40.0% | |
| CAGATTGGACAACCTTATAG+TGG | - | chr4_3:69473398-69473417 | Msa0659170:intron | 40.0% | |
| GTGACTACCTTGTAATATGG+AGG | - | chr4_3:69473749-69473768 | Msa0659170:intron | 40.0% | |
| CCTATGACCTCCATATTACA+AGG | + | chr4_3:69473759-69473778 | None:intergenic | 40.0% | |
| CCTTGTAATATGGAGGTCAT+AGG | - | chr4_3:69473756-69473775 | Msa0659170:intron | 40.0% | |
| CATTTATTACTCCAGTGCAC+AGG | + | chr4_3:69473853-69473872 | None:intergenic | 40.0% | |
| CAATTCTACGACTGCAAACA+AGG | + | chr4_3:69473913-69473932 | None:intergenic | 40.0% | |
| ACACATGAATAGAAGGCAAG+CGG | - | chr4_3:69474065-69474084 | Msa0659170:intron | 40.0% | |
| TGGATGGAAAAACCAATCCT+CGG | - | chr4_3:69474115-69474134 | Msa0659170:intron | 40.0% | |
| AATGTTGTGTTTCCGAGGAT+TGG | + | chr4_3:69474130-69474149 | None:intergenic | 40.0% | |
| AACACAACATTCATGGACCT+AGG | - | chr4_3:69474139-69474158 | Msa0659170:intron | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr4_3:69474159-69474178 | None:intergenic | 40.0% | |
| CCCTTTGAACTCTATGTAGA+AGG | - | chr4_3:69474185-69474204 | Msa0659170:intron | 40.0% | |
| !! | CGGAAAGTGTCAAAAGCAAA+TGG | - | chr4_3:69474232-69474251 | Msa0659170:intron | 40.0% |
| AGAACACGCTTTCTCATGTT+TGG | - | chr4_3:69474276-69474295 | Msa0659170:intron | 40.0% | |
| ! | TCATGTTTGGCCACTTTGTT+TGG | - | chr4_3:69474289-69474308 | Msa0659170:intron | 40.0% |
| TATCACCACTTGTGGGATTA+GGG | + | chr4_3:69474357-69474376 | None:intergenic | 40.0% | |
| AGCAATTATGGTGTACGGAT+GGG | + | chr4_3:69474416-69474435 | None:intergenic | 40.0% | |
| AAGCAATTATGGTGTACGGA+TGG | + | chr4_3:69474417-69474436 | None:intergenic | 40.0% | |
| !! | AAACTAGCTCTGCTTCATGA+TGG | + | chr4_3:69474459-69474478 | None:intergenic | 40.0% |
| TTCACTTGTCTTTCAGCACA+TGG | + | chr4_3:69474505-69474524 | None:intergenic | 40.0% | |
| TTTGCACAAAGAAGCTTGAG+TGG | - | chr4_3:69474529-69474548 | Msa0659170:intron | 40.0% | |
| CACAGTAACCAGGTTTCAAA+AGG | + | chr4_3:69474578-69474597 | None:intergenic | 40.0% | |
| AATCACAAGTCACAGTAACC+AGG | + | chr4_3:69474588-69474607 | None:intergenic | 40.0% | |
| TAGATCGCATTCTACCACAA+GGG | + | chr4_3:69474660-69474679 | None:intergenic | 40.0% | |
| ATAGATCGCATTCTACCACA+AGG | + | chr4_3:69474661-69474680 | None:intergenic | 40.0% | |
| CACTTTACAACCCTATCCTA+TGG | - | chr4_3:69475081-69475100 | Msa0659170:intron | 40.0% | |
| CCTACATTAACCCATAGGAT+AGG | + | chr4_3:69475095-69475114 | None:intergenic | 40.0% | |
| ! | CCTATCCTATGGGTTAATGT+AGG | - | chr4_3:69475092-69475111 | Msa0659170:intron | 40.0% |
| AAGATAGGGGATGTAAAGAC+AGG | + | chr4_3:69475175-69475194 | None:intergenic | 40.0% | |
| !! | ATCCCCTATCTTTTGAGAGT+GGG | - | chr4_3:69475183-69475202 | Msa0659170:intron | 40.0% |
| AACCCACTCTCAAAAGATAG+GGG | + | chr4_3:69475188-69475207 | None:intergenic | 40.0% | |
| GAACCCACTCTCAAAAGATA+GGG | + | chr4_3:69475189-69475208 | None:intergenic | 40.0% | |
| AGAACCCACTCTCAAAAGAT+AGG | + | chr4_3:69475190-69475209 | None:intergenic | 40.0% | |
| CTTAGTATTTGGCCATGAAG+CGG | + | chr4_3:69475238-69475257 | None:intergenic | 40.0% | |
| TCTCACATTGGCCAGAAATA+AGG | - | chr4_3:69475309-69475328 | Msa0659170:CDS | 40.0% | |
| !! | CTCTACTTAGGCCTTATTTC+TGG | + | chr4_3:69475323-69475342 | None:intergenic | 40.0% |
| TAGAGCCTTAGAAGTTAGCT+TGG | - | chr4_3:69475338-69475357 | Msa0659170:five_prime_UTR | 40.0% | |
| ACACTACTGAACTTGGTTCA+TGG | + | chr4_3:69475387-69475406 | None:intergenic | 40.0% | |
| TGAACCAAGTTCAGTAGTGT+TGG | - | chr4_3:69475387-69475406 | Msa0659170:intron | 40.0% | |
| GAACCAAGTTCAGTAGTGTT+GGG | - | chr4_3:69475388-69475407 | Msa0659170:intron | 40.0% | |
| AAAAACTCGTGCGTGAGATA+AGG | - | chr4_3:69475430-69475449 | Msa0659170:intron | 40.0% | |
| CTATCTGAATATGCTTGGGT+AGG | + | chr4_3:69475882-69475901 | None:intergenic | 40.0% | |
| ACCCAAGCATATTCAGATAG+AGG | - | chr4_3:69475882-69475901 | Msa0659170:intron | 40.0% | |
| CGACCCATGTTATTATTGGA+AGG | - | chr4_3:69475912-69475931 | Msa0659170:intron | 40.0% | |
| CCTCCCTTCCAATAATAACA+TGG | + | chr4_3:69475919-69475938 | None:intergenic | 40.0% | |
| CCATGTTATTATTGGAAGGG+AGG | - | chr4_3:69475916-69475935 | Msa0659170:intron | 40.0% | |
| GCCTCTATTAAATCTGACAG+GGG | - | chr4_3:69475945-69475964 | Msa0659170:intron | 40.0% | |
| ACCCCTGTCAGATTTAATAG+AGG | + | chr4_3:69475949-69475968 | None:intergenic | 40.0% | |
| TCTATTAAATCTGACAGGGG+TGG | - | chr4_3:69475948-69475967 | Msa0659170:intron | 40.0% | |
| CTATTAAATCTGACAGGGGT+GGG | - | chr4_3:69475949-69475968 | Msa0659170:intron | 40.0% | |
| TATTAAATCTGACAGGGGTG+GGG | - | chr4_3:69475950-69475969 | Msa0659170:intron | 40.0% | |
| AAGAAAGGCTGAGATAGACT+TGG | - | chr4_3:69476010-69476029 | Msa0659170:intron | 40.0% | |
| AAAATTCATACCTGGCTGGC+TGG | + | chr4_3:69471248-69471267 | None:intergenic | 45.0% | |
| TATTGCTTGCTCGCCAAGTT+TGG | + | chr4_3:69471324-69471343 | None:intergenic | 45.0% | |
| AGAATGTGGATTCGCTGCTT+AGG | + | chr4_3:69471465-69471484 | None:intergenic | 45.0% | |
| GTGCGATTCTGACGCAATTT+AGG | - | chr4_3:69471577-69471596 | Msa0659170:intron | 45.0% | |
| !! | TGTCGGTGTTTTCTAGAGGA+GGG | - | chr4_3:69471675-69471694 | Msa0659170:intron | 45.0% |
| !! | GTGTTTTCTAGAGGAGGGTA+AGG | - | chr4_3:69471680-69471699 | Msa0659170:intron | 45.0% |
| AGGAGGGTAAGGGAATGAAT+AGG | - | chr4_3:69471691-69471710 | Msa0659170:intron | 45.0% | |
| CCTACATGGGTAGCCAAAAA+AGG | + | chr4_3:69471869-69471888 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTGGCTACCCATGT+AGG | - | chr4_3:69471866-69471885 | Msa0659170:intron | 45.0% |
| !! | TGGGTGCTACTAGACAGAAA+TGG | - | chr4_3:69472062-69472081 | Msa0659170:intron | 45.0% |
| ATGGTCATCAGAAGAGGAAG+CGG | - | chr4_3:69472081-69472100 | Msa0659170:intron | 45.0% | |
| AAAGCTGGAGTTGTGAAGCA+TGG | - | chr4_3:69472109-69472128 | Msa0659170:intron | 45.0% | |
| TGAAGCATGGCGTAGGTAAA+TGG | - | chr4_3:69472122-69472141 | Msa0659170:intron | 45.0% | |
| CCGCTCAAATATCGATCTCA+AGG | - | chr4_3:69472189-69472208 | Msa0659170:intron | 45.0% | |
| AAGGCAAATGGATCATCCTC+CGG | - | chr4_3:69472360-69472379 | Msa0659170:intron | 45.0% | |
| TGGAAATTAAGGGTCCGGAA+AGG | - | chr4_3:69472523-69472542 | Msa0659170:intron | 45.0% | |
| GTCCGGAAAGGTCTATCAAA+AGG | - | chr4_3:69472535-69472554 | Msa0659170:intron | 45.0% | |
| AAGACGAGACTTTACCACAG+TGG | - | chr4_3:69473005-69473024 | Msa0659170:intron | 45.0% | |
| GTGTTGCCAATCACAGATCA+CGG | + | chr4_3:69473129-69473148 | None:intergenic | 45.0% | |
| CCGGCGATTGTCTTTCAATT+AGG | - | chr4_3:69473203-69473222 | Msa0659170:intron | 45.0% | |
| CTGGATGATCTTAACACGCT+TGG | + | chr4_3:69473244-69473263 | None:intergenic | 45.0% | |
| ! | TCTAGCTTGAATGAGGTCGA+TGG | - | chr4_3:69473429-69473448 | Msa0659170:intron | 45.0% |
| CACATGAATAGAAGGCAAGC+GGG | - | chr4_3:69474066-69474085 | Msa0659170:intron | 45.0% | |
| CCATGAATGTTGTGTTTCCG+AGG | + | chr4_3:69474135-69474154 | None:intergenic | 45.0% | |
| CCTCGGAAACACAACATTCA+TGG | - | chr4_3:69474132-69474151 | Msa0659170:intron | 45.0% | |
| TGTAGAAGGTTAACACCCTC+TGG | - | chr4_3:69474199-69474218 | Msa0659170:intron | 45.0% | |
| ! | TTTGTTTGGCGCGGCTTTTA+GGG | - | chr4_3:69474303-69474322 | Msa0659170:intron | 45.0% |
| ATCACCACTTGTGGGATTAG+GGG | + | chr4_3:69474356-69474375 | None:intergenic | 45.0% | |
| GTATCACCACTTGTGGGATT+AGG | + | chr4_3:69474358-69474377 | None:intergenic | 45.0% | |
| ATGCATGTGTGGACTTGACT+GGG | + | chr4_3:69474381-69474400 | None:intergenic | 45.0% | |
| AGGAGGAAAACATGCATGTG+TGG | + | chr4_3:69474392-69474411 | None:intergenic | 45.0% | |
| ATTATGGTGTACGGATGGGT+AGG | + | chr4_3:69474412-69474431 | None:intergenic | 45.0% | |
| !!! | ACTCGAAGCCTTTTGAAACC+TGG | - | chr4_3:69474567-69474586 | Msa0659170:intron | 45.0% |
| AGATCGCATTCTACCACAAG+GGG | + | chr4_3:69474659-69474678 | None:intergenic | 45.0% | |
| TAAGCTGTCAGCAAAACTGG+TGG | - | chr4_3:69474899-69474918 | Msa0659170:CDS | 45.0% | |
| ! | CTGGTGGATCTTGTATCTAG+TGG | - | chr4_3:69474915-69474934 | Msa0659170:CDS | 45.0% |
| ! | GTTGTAAAGTGCACCGATAC+TGG | + | chr4_3:69475072-69475091 | None:intergenic | 45.0% |
| GATATCCCCATTTGTAGCAG+AGG | - | chr4_3:69475145-69475164 | Msa0659170:intron | 45.0% | |
| !! | CATCCCCTATCTTTTGAGAG+TGG | - | chr4_3:69475182-69475201 | Msa0659170:intron | 45.0% |
| TTCTGGCCAATGTGAGACTT+TGG | + | chr4_3:69475306-69475325 | None:intergenic | 45.0% | |
| ! | AGCCTTAGAAGTTAGCTTGG+TGG | - | chr4_3:69475341-69475360 | Msa0659170:five_prime_UTR | 45.0% |
| CTCCACCAAGCTAACTTCTA+AGG | + | chr4_3:69475346-69475365 | None:intergenic | 45.0% | |
| ACACCCAACACTACTGAACT+TGG | + | chr4_3:69475394-69475413 | None:intergenic | 45.0% | |
| ATTAAATCTGACAGGGGTGG+GGG | - | chr4_3:69475951-69475970 | Msa0659170:intron | 45.0% | |
| GGCTGAGATAGACTTGGAAT+TGG | - | chr4_3:69476016-69476035 | Msa0659170:intron | 45.0% | |
| AGAAGCTGAAGAGGCAACAA+AGG | - | chr4_3:69476118-69476137 | Msa0659170:intron | 45.0% | |
| TTCTCACCCGTAACTTCCGA+CGG | + | chr4_3:69471499-69471518 | None:intergenic | 50.0% | |
| GCCATAGGAGAGAAAGGGAA+GGG | - | chr4_3:69471602-69471621 | Msa0659170:intron | 50.0% | |
| TCCCTTCCCTTTCTCTCCTA+TGG | + | chr4_3:69471606-69471625 | None:intergenic | 50.0% | |
| TAGGAGAGAAAGGGAAGGGA+AGG | - | chr4_3:69471606-69471625 | Msa0659170:intron | 50.0% | |
| AGGAGAGAAAGGGAAGGGAA+GGG | - | chr4_3:69471607-69471626 | Msa0659170:intron | 50.0% | |
| !! | GTGTCGGTGTTTTCTAGAGG+AGG | - | chr4_3:69471674-69471693 | Msa0659170:intron | 50.0% |
| CGGGGAAAAATAGTTCGCCA+GGG | - | chr4_3:69471904-69471923 | Msa0659170:intron | 50.0% | |
| AATAGTTCGCCAGGGCAAGA+TGG | - | chr4_3:69471912-69471931 | Msa0659170:intron | 50.0% | |
| AGGCAAATGGATCATCCTCC+GGG | - | chr4_3:69472361-69472380 | Msa0659170:intron | 50.0% | |
| AAATGCGGGAAAGCTCCGTT+TGG | - | chr4_3:69472877-69472896 | Msa0659170:intron | 50.0% | |
| CACTAGTCACAATGAACCCC+CGG | + | chr4_3:69472967-69472986 | None:intergenic | 50.0% | |
| GAGACTTTACCACAGTGGAG+CGG | - | chr4_3:69473010-69473029 | Msa0659170:intron | 50.0% | |
| CTTCATCTGCAAGCGAACCT+TGG | - | chr4_3:69473714-69473733 | Msa0659170:intron | 50.0% | |
| CGAACCTTGGCACATTGGTA+AGG | - | chr4_3:69473727-69473746 | Msa0659170:intron | 50.0% | |
| GTCACCTTACCAATGTGCCA+AGG | + | chr4_3:69473734-69473753 | None:intergenic | 50.0% | |
| ! | CGCTGCTAAGCCTTTTTGGA+TGG | - | chr4_3:69474099-69474118 | Msa0659170:intron | 50.0% |
| ! | TTTGGCCACTTTGTTTGGCG+CGG | - | chr4_3:69474294-69474313 | Msa0659170:intron | 50.0% |
| AAAAGCCGCGCCAAACAAAG+TGG | + | chr4_3:69474302-69474321 | None:intergenic | 50.0% | |
| !! | CTTTGTTTGGCGCGGCTTTT+AGG | - | chr4_3:69474302-69474321 | Msa0659170:intron | 50.0% |
| ! | ATTAGGGGTCGGGGCTTTTA+TGG | + | chr4_3:69474341-69474360 | None:intergenic | 50.0% |
| ! | ACTGGGGTATCACCACTTGT+GGG | + | chr4_3:69474364-69474383 | None:intergenic | 50.0% |
| TGCATGTGTGGACTTGACTG+GGG | + | chr4_3:69474380-69474399 | None:intergenic | 50.0% | |
| CATGCATGTGTGGACTTGAC+TGG | + | chr4_3:69474382-69474401 | None:intergenic | 50.0% | |
| GCTTCATGATGGCATCGTCT+TGG | + | chr4_3:69474448-69474467 | None:intergenic | 50.0% | |
| ! | GGGGCATTTGAAGCACCAAA+GGG | + | chr4_3:69474640-69474659 | None:intergenic | 50.0% |
| !! | AGGGGCATTTGAAGCACCAA+AGG | + | chr4_3:69474641-69474660 | None:intergenic | 50.0% |
| GTAGAACCAATACTGCGCAC+CGG | - | chr4_3:69474863-69474882 | Msa0659170:intron | 50.0% | |
| ! | AGTGCACCGATACTGGTGAT+TGG | + | chr4_3:69475065-69475084 | None:intergenic | 50.0% |
| TCCCCATTTGTAGCAGAGGT+TGG | - | chr4_3:69475149-69475168 | Msa0659170:intron | 50.0% | |
| GCCAACCTCTGCTACAAATG+GGG | + | chr4_3:69475153-69475172 | None:intergenic | 50.0% | |
| GGCCAACCTCTGCTACAAAT+GGG | + | chr4_3:69475154-69475173 | None:intergenic | 50.0% | |
| AGGCCAACCTCTGCTACAAA+TGG | + | chr4_3:69475155-69475174 | None:intergenic | 50.0% | |
| ! | TGCTGCTTAGATACAGCTGC+TGG | - | chr4_3:69475596-69475615 | Msa0659170:intron | 50.0% |
| ! | ACAGCTGCTGGTTGTGAGTT+TGG | - | chr4_3:69475608-69475627 | Msa0659170:intron | 50.0% |
| ! | CAGCTGCTGGTTGTGAGTTT+GGG | - | chr4_3:69475609-69475628 | Msa0659170:intron | 50.0% |
| AGCTGAAGAGGCAACAAAGG+AGG | - | chr4_3:69476121-69476140 | Msa0659170:intron | 50.0% | |
| AGAAGCAGAAGCTGATGCAG+CGG | - | chr4_3:69476154-69476173 | Msa0659170:five_prime_UTR | 50.0% | |
| ATTCTCAACGCAGCAGCCGT+CGG | - | chr4_3:69471480-69471499 | Msa0659170:CDS | 55.0% | |
| GCGTCAGAATCGCACGTTCA+CGG | + | chr4_3:69471572-69471591 | None:intergenic | 55.0% | |
| ! | GACGCAATTTAGGGCGCCAT+AGG | - | chr4_3:69471587-69471606 | Msa0659170:intron | 55.0% |
| ! | TAGGGCGCCATAGGAGAGAA+AGG | - | chr4_3:69471596-69471615 | Msa0659170:intron | 55.0% |
| ! | AGGGCGCCATAGGAGAGAAA+GGG | - | chr4_3:69471597-69471616 | Msa0659170:intron | 55.0% |
| CGCCATAGGAGAGAAAGGGA+AGG | - | chr4_3:69471601-69471620 | Msa0659170:intron | 55.0% | |
| GCGGGGAAAAATAGTTCGCC+AGG | - | chr4_3:69471903-69471922 | Msa0659170:intron | 55.0% | |
| GGAGTTGTGAAGCATGGCGT+AGG | - | chr4_3:69472115-69472134 | Msa0659170:intron | 55.0% | |
| GGCAAATGGATCATCCTCCG+GGG | - | chr4_3:69472362-69472381 | Msa0659170:intron | 55.0% | |
| TGCTAGCTGAGAGTTGTCCC+CGG | + | chr4_3:69472382-69472401 | None:intergenic | 55.0% | |
| TGCAAAAAGCCGCTCCACTG+TGG | + | chr4_3:69473022-69473041 | None:intergenic | 55.0% | |
| GCAAGCGAACCTTGGCACAT+TGG | - | chr4_3:69473722-69473741 | Msa0659170:intron | 55.0% | |
| CAAGCGAAGAGGCTGTTGCA+AGG | + | chr4_3:69473789-69473808 | None:intergenic | 55.0% | |
| TGCAACAGCCTCTTCGCTTG+CGG | - | chr4_3:69473789-69473808 | Msa0659170:intron | 55.0% | |
| ! | GCTGCGCTGCTAAGCCTTTT+TGG | - | chr4_3:69474095-69474114 | Msa0659170:intron | 55.0% |
| GGTTAACACCCTCTGGTGCT+AGG | - | chr4_3:69474206-69474225 | Msa0659170:intron | 55.0% | |
| TTCCGCTTCCTAGCACCAGA+GGG | + | chr4_3:69474217-69474236 | None:intergenic | 55.0% | |
| TTTCCGCTTCCTAGCACCAG+AGG | + | chr4_3:69474218-69474237 | None:intergenic | 55.0% | |
| ACTTGTGGGATTAGGGGTCG+GGG | + | chr4_3:69474350-69474369 | None:intergenic | 55.0% | |
| CACTTGTGGGATTAGGGGTC+GGG | + | chr4_3:69474351-69474370 | None:intergenic | 55.0% | |
| CCACTTGTGGGATTAGGGGT+CGG | + | chr4_3:69474352-69474371 | None:intergenic | 55.0% | |
| ! | GACTGGGGTATCACCACTTG+TGG | + | chr4_3:69474365-69474384 | None:intergenic | 55.0% |
| ATGGTGTACGGATGGGTAGG+AGG | + | chr4_3:69474409-69474428 | None:intergenic | 55.0% | |
| GGTGCTTCAAATGCCCCTTG+TGG | - | chr4_3:69474643-69474662 | Msa0659170:intron | 55.0% | |
| AATCTGCCGGTGCGCAGTAT+TGG | + | chr4_3:69474872-69474891 | None:intergenic | 55.0% | |
| CTCTTCAGCTTCTGCCATGG+CGG | + | chr4_3:69476111-69476130 | None:intergenic | 55.0% | |
| TGCCTCTTCAGCTTCTGCCA+TGG | + | chr4_3:69476114-69476133 | None:intergenic | 55.0% | |
| AGAGGCAACAAAGGAGGCAG+AGG | - | chr4_3:69476127-69476146 | Msa0659170:intron | 55.0% | |
| ATAATGGTGGCCAGCCAGCC+AGG | - | chr4_3:69471235-69471254 | Msa0659170:CDS | 60.0% | |
| CGGCTGCTGCGTTGAGAATG+TGG | + | chr4_3:69471479-69471498 | None:intergenic | 60.0% | |
| GCAGCAGCCGTCGGAAGTTA+CGG | - | chr4_3:69471489-69471508 | Msa0659170:CDS | 60.0% | |
| CAGCAGCCGTCGGAAGTTAC+GGG | - | chr4_3:69471490-69471509 | Msa0659170:CDS | 60.0% | |
| CGGCGCTACAGTGAGAGGAA+GGG | + | chr4_3:69471552-69471571 | None:intergenic | 60.0% | |
| ACGGCGCTACAGTGAGAGGA+AGG | + | chr4_3:69471553-69471572 | None:intergenic | 60.0% | |
| GTTCACGGCGCTACAGTGAG+AGG | + | chr4_3:69471557-69471576 | None:intergenic | 60.0% | |
| GAGGAAGCGGCTCTCAAAGC+TGG | - | chr4_3:69472094-69472113 | Msa0659170:intron | 60.0% | |
| TAGCTGAGAGTTGTCCCCGG+AGG | + | chr4_3:69472379-69472398 | None:intergenic | 60.0% | |
| ACGGAGTCGTCACGCTGTTC+TGG | + | chr4_3:69472429-69472448 | None:intergenic | 60.0% | |
| AGAACAGCGTGACGACTCCG+TGG | - | chr4_3:69472428-69472447 | Msa0659170:intron | 60.0% | |
| TGCGGGAAAGCTCCGTTTGG+TGG | - | chr4_3:69472880-69472899 | Msa0659170:intron | 60.0% | |
| GCAACAGCCTCTTCGCTTGC+GGG | - | chr4_3:69473790-69473809 | Msa0659170:intron | 60.0% | |
| CCTTACACCCGCAAGCGAAG+AGG | + | chr4_3:69473800-69473819 | None:intergenic | 60.0% | |
| CCTCTTCGCTTGCGGGTGTA+AGG | - | chr4_3:69473797-69473816 | Msa0659170:intron | 60.0% | |
| ! | CACCCTCTGGTGCTAGGAAG+CGG | - | chr4_3:69474212-69474231 | Msa0659170:intron | 60.0% |
| ! | GGGGTCGGGGCTTTTATGGT+AGG | + | chr4_3:69474337-69474356 | None:intergenic | 60.0% |
| CCGACCCCTAATCCCACAAG+TGG | - | chr4_3:69474349-69474368 | Msa0659170:intron | 60.0% | |
| TGCTGAAGCAGAAGCCGCCA+TGG | - | chr4_3:69476094-69476113 | Msa0659170:intron | 60.0% | |
| CGCCATGGCAGAAGCTGAAG+AGG | - | chr4_3:69476109-69476128 | Msa0659170:intron | 60.0% | |
| CCAGTGCACAGGCTCCCACT+AGG | + | chr4_3:69473842-69473861 | None:intergenic | 65.0% | |
| CCTAGTGGGAGCCTGTGCAC+TGG | - | chr4_3:69473839-69473858 | Msa0659170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69471171 | 69476223 | 69471171 | ID=Msa0659170;Name=Msa0659170 |
| chr4_3 | mRNA | 69471171 | 69476223 | 69471171 | ID=Msa0659170-mRNA-1;Parent=Msa0659170;Name=Msa0659170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=114|0.33|0.28|0.85|0.83|0.71|7|0|289 |
| chr4_3 | exon | 69471171 | 69471539 | 69471171 | ID=Msa0659170-mRNA-1:exon:20384;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69472444 | 69472527 | 69472444 | ID=Msa0659170-mRNA-1:exon:20383;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69473909 | 69473993 | 69473909 | ID=Msa0659170-mRNA-1:exon:20382;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69474073 | 69474083 | 69474073 | ID=Msa0659170-mRNA-1:exon:20381;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69474888 | 69475058 | 69474888 | ID=Msa0659170-mRNA-1:exon:20380;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69475184 | 69475361 | 69475184 | ID=Msa0659170-mRNA-1:exon:20379;Parent=Msa0659170-mRNA-1 |
| chr4_3 | exon | 69476138 | 69476223 | 69476138 | ID=Msa0659170-mRNA-1:exon:20378;Parent=Msa0659170-mRNA-1 |
| chr4_3 | five_prime_UTR | 69476138 | 69476223 | 69476138 | ID=Msa0659170-mRNA-1:five_prime_utr;Parent=Msa0659170-mRNA-1 |
| chr4_3 | five_prime_UTR | 69475334 | 69475361 | 69475334 | ID=Msa0659170-mRNA-1:five_prime_utr;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69475184 | 69475333 | 69475184 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69474888 | 69475058 | 69474888 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69474073 | 69474083 | 69474073 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69473909 | 69473993 | 69473909 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69472444 | 69472527 | 69472444 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| chr4_3 | CDS | 69471171 | 69471539 | 69471171 | ID=Msa0659170-mRNA-1:cds;Parent=Msa0659170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
