Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705160 | XP_024629648.1 | 88.933 | 253 | 15 | 1 | 1 | 240 | 1 | 253 | 1.03e-158 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705160 | sp|Q8VWK4|TRB1_ARATH | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.65e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705160 | G7LCB1 | 88.933 | 253 | 15 | 1 | 1 | 240 | 1 | 253 | 6.04e-157 | 455 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0705160 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659170 | Msa0705160 | 0.969299 | 6.411184e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705160 | MtrunA17_Chr2g0293381 | 61.694 | 248 | 73 | 2 | 1 | 235 | 1 | 239 | 1.53e-100 | 296 |
| Msa0705160 | MtrunA17_Chr8g0384671 | 62.602 | 246 | 72 | 4 | 1 | 235 | 1 | 237 | 3.39e-99 | 293 |
| Msa0705160 | MtrunA17_Chr8g0383821 | 92.857 | 112 | 8 | 0 | 1 | 112 | 1 | 112 | 1.84e-73 | 221 |
| Msa0705160 | MtrunA17_Chr4g0054131 | 43.131 | 313 | 140 | 7 | 1 | 286 | 1 | 302 | 1.47e-48 | 163 |
| Msa0705160 | MtrunA17_Chr5g0401061 | 44.000 | 300 | 147 | 4 | 1 | 289 | 1 | 290 | 4.18e-48 | 162 |
| Msa0705160 | MtrunA17_Chr8g0383841 | 89.706 | 68 | 7 | 0 | 173 | 240 | 1 | 68 | 5.45e-35 | 122 |
| Msa0705160 | MtrunA17_Chr1g0195251 | 51.969 | 127 | 49 | 3 | 112 | 238 | 295 | 409 | 1.03e-31 | 122 |
| Msa0705160 | MtrunA17_Chr2g0329921 | 33.482 | 224 | 81 | 6 | 1 | 174 | 1 | 206 | 3.05e-27 | 107 |
| Msa0705160 | MtrunA17_Chr8g0342871 | 31.250 | 304 | 156 | 9 | 1 | 283 | 1 | 272 | 4.98e-27 | 106 |
| Msa0705160 | MtrunA17_Chr1g0166681 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 2.91e-25 | 99.8 |
| Msa0705160 | MtrunA17_Chr1g0195261 | 74.000 | 50 | 13 | 0 | 1 | 50 | 1 | 50 | 3.58e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705160 | AT1G49950.3 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0705160 | AT1G49950.1 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0705160 | AT1G49950.2 | 46.063 | 254 | 106 | 8 | 1 | 237 | 1 | 240 | 2.69e-65 | 207 |
| Msa0705160 | AT5G67580.2 | 41.722 | 302 | 149 | 6 | 1 | 286 | 1 | 291 | 1.67e-42 | 148 |
| Msa0705160 | AT5G67580.1 | 41.722 | 302 | 149 | 6 | 1 | 286 | 1 | 291 | 1.67e-42 | 148 |
| Msa0705160 | AT3G49850.1 | 36.239 | 218 | 126 | 2 | 1 | 206 | 1 | 217 | 2.17e-40 | 142 |
| Msa0705160 | AT3G49850.2 | 36.239 | 218 | 126 | 2 | 1 | 206 | 1 | 217 | 2.17e-40 | 142 |
| Msa0705160 | AT1G72740.2 | 34.673 | 199 | 118 | 3 | 1 | 188 | 1 | 198 | 2.06e-29 | 113 |
| Msa0705160 | AT1G72740.1 | 36.313 | 179 | 103 | 2 | 1 | 168 | 1 | 179 | 7.33e-28 | 109 |
| Msa0705160 | AT1G17520.1 | 36.316 | 190 | 99 | 3 | 1 | 170 | 1 | 188 | 6.81e-25 | 101 |
| Msa0705160 | AT1G17520.4 | 35.417 | 192 | 102 | 3 | 1 | 172 | 1 | 190 | 2.28e-24 | 100 |
| Msa0705160 | AT1G17520.2 | 36.649 | 191 | 98 | 4 | 1 | 170 | 1 | 189 | 5.14e-24 | 99.4 |
| Msa0705160 | AT1G17520.3 | 35.751 | 193 | 101 | 4 | 1 | 172 | 1 | 191 | 1.94e-23 | 97.4 |
Find 73 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATTGCTTCTTTCATTA+AGG | 0.194532 | 4_4:-77717195 | Msa0705160:intron |
| AAACCGACCCATGTTATTAT+TGG | 0.212298 | 4_4:-77714739 | Msa0705160:CDS |
| ACTCTCAGCTAGCAATAAAA+AGG | 0.232134 | 4_4:-77718271 | Msa0705160:CDS |
| TAGATATTGCTTCCACTATA+AGG | 0.286103 | 4_4:+77717249 | None:intergenic |
| TGTGGGTTGGATAGGATAAA+TGG | 0.326262 | 4_4:-77718337 | Msa0705160:intron |
| TGAAGCATGGCGTAGGTAAA+TGG | 0.346059 | 4_4:-77718537 | Msa0705160:CDS |
| TTCCTCTATCTGAATATGCT+TGG | 0.349369 | 4_4:+77714763 | None:intergenic |
| AAATAAGCTGTCAGCAAAAC+TGG | 0.353881 | 4_4:-77715751 | Msa0705160:CDS |
| TCCTCTATCTGAATATGCTT+GGG | 0.366075 | 4_4:+77714764 | None:intergenic |
| GGCTGAGATAGACTTGGAAT+TGG | 0.370284 | 4_4:-77714631 | Msa0705160:CDS |
| CCAATTGGTTCAACTCATAA+TGG | 0.373242 | 4_4:-77719439 | Msa0705160:five_prime_UTR |
| AAGAATGATTTCTCTCCAAT+TGG | 0.402800 | 4_4:-77719454 | Msa0705160:five_prime_UTR |
| CTATTAAATCTGACAGGGGT+GGG | 0.403434 | 4_4:-77714698 | Msa0705160:CDS |
| GAGGAAGCGGCTCTCAAAGC+TGG | 0.427705 | 4_4:-77718565 | Msa0705160:CDS |
| ACGGAGTCGTCACGCTGTTC+TGG | 0.440395 | 4_4:+77718233 | None:intergenic |
| CCATTATGAGTTGAACCAAT+TGG | 0.445687 | 4_4:+77719439 | None:intergenic |
| TATTAAATCTGACAGGGGTG+GGG | 0.448513 | 4_4:-77714697 | Msa0705160:CDS |
| AATCTGCCGGTGCGCAGTAT+TGG | 0.455578 | 4_4:+77715778 | None:intergenic |
| ATTAAATCTGACAGGGGTGG+GGG | 0.463232 | 4_4:-77714696 | Msa0705160:CDS |
| AAGCCTCTATTAAATCTGAC+AGG | 0.463302 | 4_4:-77714704 | Msa0705160:CDS |
| AATATGAGTCTGAAGGCAAA+TGG | 0.474909 | 4_4:-77718311 | Msa0705160:CDS |
| ACCCAAGCATATTCAGATAG+AGG | 0.477513 | 4_4:-77714765 | Msa0705160:CDS |
| ATAATGGTGGCCAGCCAGCC+AGG | 0.479473 | 4_4:-77719423 | Msa0705160:intron |
| AGGCAAATGGATCATCCTCC+GGG | 0.485206 | 4_4:-77718298 | Msa0705160:CDS |
| CGCCATGGCAGAAGCTGAAG+AGG | 0.487462 | 4_4:-77714538 | Msa0705160:CDS |
| ACCCCTGTCAGATTTAATAG+AGG | 0.496957 | 4_4:+77714701 | None:intergenic |
| CCTCCCTTCCAATAATAACA+TGG | 0.497696 | 4_4:+77714731 | None:intergenic |
| TGCCTCTTCAGCTTCTGCCA+TGG | 0.502504 | 4_4:+77714536 | None:intergenic |
| AAGGCAAATGGATCATCCTC+CGG | 0.503120 | 4_4:-77718299 | Msa0705160:CDS |
| CAGATTGGACAACCTTATAG+TGG | 0.503998 | 4_4:-77717261 | Msa0705160:CDS |
| AAAATTCATACCTGGCTGGC+TGG | 0.506502 | 4_4:+77719413 | None:intergenic |
| CTGGTGGATCTTGTATCTAG+TGG | 0.509226 | 4_4:-77715732 | Msa0705160:CDS |
| TTATATTTCAGGTGAAACAT+AGG | 0.516350 | 4_4:-77714803 | Msa0705160:intron |
| CGACCCATGTTATTATTGGA+AGG | 0.524027 | 4_4:-77714735 | Msa0705160:CDS |
| ATCTAGTGGAAAACTGATCA+AGG | 0.537966 | 4_4:-77715718 | Msa0705160:intron |
| AAAGTCCATGTCTTTACAAG+AGG | 0.539777 | 4_4:-77714601 | Msa0705160:CDS |
| TGCTGAAGCAGAAGCCGCCA+TGG | 0.540719 | 4_4:-77714553 | Msa0705160:CDS |
| AGAGGCAACAAAGGAGGCAG+AGG | 0.547850 | 4_4:-77714520 | Msa0705160:CDS |
| AGAAGCTGAAGAGGCAACAA+AGG | 0.557008 | 4_4:-77714529 | Msa0705160:CDS |
| CCGCTCAAATATCGATCTCA+AGG | 0.560055 | 4_4:-77718470 | Msa0705160:intron |
| AAGAAAGGCTGAGATAGACT+TGG | 0.566957 | 4_4:-77714637 | Msa0705160:CDS |
| CTCTTCAGCTTCTGCCATGG+CGG | 0.568303 | 4_4:+77714539 | None:intergenic |
| ATGGTCATCAGAAGAGGAAG+CGG | 0.577986 | 4_4:-77718578 | Msa0705160:CDS |
| ACAGAAATGGTCATCAGAAG+AGG | 0.578108 | 4_4:-77718584 | Msa0705160:CDS |
| AGCAATATCTAGCTTGAATG+AGG | 0.580943 | 4_4:-77717237 | Msa0705160:CDS |
| GACCCATGTTATTATTGGAA+GGG | 0.581327 | 4_4:-77714734 | Msa0705160:CDS |
| CTATCTGAATATGCTTGGGT+AGG | 0.584721 | 4_4:+77714768 | None:intergenic |
| ATGGAGAAATATGAGTCTGA+AGG | 0.599241 | 4_4:-77718318 | Msa0705160:CDS |
| TGGGTGCTACTAGACAGAAA+TGG | 0.601772 | 4_4:-77718597 | Msa0705160:CDS |
| AGCCTCTATTAAATCTGACA+GGG | 0.601960 | 4_4:-77714703 | Msa0705160:CDS |
| CTTCCAATAATAACATGGGT+CGG | 0.603083 | 4_4:+77714736 | None:intergenic |
| CCATGTTATTATTGGAAGGG+AGG | 0.603196 | 4_4:-77714731 | Msa0705160:CDS |
| GGAGTTGTGAAGCATGGCGT+AGG | 0.603718 | 4_4:-77718544 | Msa0705160:CDS |
| TGCTAGCTGAGAGTTGTCCC+CGG | 0.606787 | 4_4:+77718280 | None:intergenic |
| CTCCCTTCCAATAATAACAT+GGG | 0.607660 | 4_4:+77714732 | None:intergenic |
| TCTATTAAATCTGACAGGGG+TGG | 0.615717 | 4_4:-77714699 | Msa0705160:CDS |
| AAAGCTGGAGTTGTGAAGCA+TGG | 0.620365 | 4_4:-77718550 | Msa0705160:CDS |
| AGCTGAAGAGGCAACAAAGG+AGG | 0.624067 | 4_4:-77714526 | Msa0705160:CDS |
| TAAGCTGTCAGCAAAACTGG+TGG | 0.625095 | 4_4:-77715748 | Msa0705160:CDS |
| AGAAGCAGAAGCTGATGCAG+CGG | 0.627843 | 4_4:-77714493 | Msa0705160:CDS |
| TACAACACATGGTTAAACTC+AGG | 0.630999 | 4_4:+77718496 | None:intergenic |
| CCTTGAGATCGATATTTGAG+CGG | 0.641849 | 4_4:+77718470 | None:intergenic |
| TCTAGCTTGAATGAGGTCGA+TGG | 0.649394 | 4_4:-77717230 | Msa0705160:CDS |
| GTAGAACCAATACTGCGCAC+CGG | 0.653755 | 4_4:-77715784 | Msa0705160:intron |
| ATTGGTTCAACTCATAATGG+TGG | 0.653978 | 4_4:-77719436 | Msa0705160:five_prime_UTR |
| GATTACCTCTTGTAAAGACA+TGG | 0.659824 | 4_4:+77714596 | None:intergenic |
| GCCTCTATTAAATCTGACAG+GGG | 0.668262 | 4_4:-77714702 | Msa0705160:CDS |
| TAAATGGAGTAAGATACTCA+AGG | 0.669197 | 4_4:-77718521 | Msa0705160:CDS |
| AGTAACAAGATTTACAGCCA+CGG | 0.669902 | 4_4:+77718214 | None:intergenic |
| TTGAGCGGATATACAACACA+TGG | 0.677687 | 4_4:+77718485 | None:intergenic |
| AGAACAGCGTGACGACTCCG+TGG | 0.703510 | 4_4:-77718231 | Msa0705160:CDS |
| TAGCTGAGAGTTGTCCCCGG+AGG | 0.710409 | 4_4:+77718283 | None:intergenic |
| GGCAAATGGATCATCCTCCG+GGG | 0.731603 | 4_4:-77718297 | Msa0705160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTTATAGCATTA+GGG | - | chr4_4:77714667-77714686 | Msa0705160:CDS | 10.0% |
| !!! | TGCTTTTAAATTATTAAATT+TGG | - | chr4_4:77716798-77716817 | Msa0705160:intron | 10.0% |
| !!! | TTTATTTTTTGTTTCCTTTT+TGG | + | chr4_4:77714641-77714660 | None:intergenic | 15.0% |
| !!! | CTAATTTTATTTATAGCATT+AGG | - | chr4_4:77714666-77714685 | Msa0705160:CDS | 15.0% |
| !! | ATTTGTATAATTTATGATGT+TGG | - | chr4_4:77715278-77715297 | Msa0705160:intron | 15.0% |
| !! | AATACATTATTATGTGTAAA+GGG | + | chr4_4:77715532-77715551 | None:intergenic | 15.0% |
| !! | ATAATGTATTGAATAAATGT+TGG | - | chr4_4:77715542-77715561 | Msa0705160:intron | 15.0% |
| !! | TAAACAAAACAAAAAATATG+GGG | + | chr4_4:77715839-77715858 | None:intergenic | 15.0% |
| !! | CTAAACAAAACAAAAAATAT+GGG | + | chr4_4:77715840-77715859 | None:intergenic | 15.0% |
| !! | ACTAAACAAAACAAAAAATA+TGG | + | chr4_4:77715841-77715860 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTTGTTTAGTA+TGG | - | chr4_4:77715842-77715861 | Msa0705160:intron | 15.0% |
| !! | TAGTATGGTAATTTATTTAA+TGG | - | chr4_4:77715857-77715876 | Msa0705160:intron | 15.0% |
| !! | TCAAAATGAAAAATTTATCT+TGG | - | chr4_4:77715919-77715938 | Msa0705160:intron | 15.0% |
| !! | TATAAGATGCAATTAAATAA+GGG | + | chr4_4:77716040-77716059 | None:intergenic | 15.0% |
| !! | AAATTAAACAAATAACATCA+TGG | + | chr4_4:77716943-77716962 | None:intergenic | 15.0% |
| !!! | ATTTTGATTAGTACAAAAAT+TGG | - | chr4_4:77716959-77716978 | Msa0705160:intron | 15.0% |
| !! | TTCTTCATTTATATATATCA+AGG | - | chr4_4:77717310-77717329 | Msa0705160:intron | 15.0% |
| !! | AAAAAAAAGAAAGAAAAAAG+TGG | + | chr4_4:77718786-77718805 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTCTTTATATTTT+AGG | - | chr4_4:77718998-77719017 | Msa0705160:intron | 15.0% |
| !!! | AAGTTTATTTTATAAGCGTT+TGG | + | chr4_4:77714570-77714589 | None:intergenic | 20.0% |
| !!! | AATAGCATTGATTAAATAGA+GGG | - | chr4_4:77714615-77714634 | Msa0705160:CDS | 20.0% |
| !! | ACTTGTTTAGGTAAAAAATA+AGG | - | chr4_4:77714997-77715016 | Msa0705160:intron | 20.0% |
| !!! | AACATATAATCACAAGTTTT+AGG | + | chr4_4:77715242-77715261 | None:intergenic | 20.0% |
| !! | AAAACTTGTGATTATATGTT+TGG | - | chr4_4:77715242-77715261 | Msa0705160:intron | 20.0% |
| !! | CAATACATTATTATGTGTAA+AGG | + | chr4_4:77715533-77715552 | None:intergenic | 20.0% |
| !!! | ACTTTTTAACAAATGTCTTT+GGG | + | chr4_4:77715899-77715918 | None:intergenic | 20.0% |
| !!! | AACTTTTTAACAAATGTCTT+TGG | + | chr4_4:77715900-77715919 | None:intergenic | 20.0% |
| !! | CTATAAGATGCAATTAAATA+AGG | + | chr4_4:77716041-77716060 | None:intergenic | 20.0% |
| !! | ATATAATTTAATTGTGCTAC+CGG | - | chr4_4:77716458-77716477 | Msa0705160:intron | 20.0% |
| !! | AAGGTATAATTATGATTTCT+AGG | - | chr4_4:77716757-77716776 | Msa0705160:intron | 20.0% |
| !! | AGATATTAGAAGTTCTATTT+AGG | + | chr4_4:77718742-77718761 | None:intergenic | 20.0% |
| !! | AAATAGAACTTCTAATATCT+AGG | - | chr4_4:77718742-77718761 | Msa0705160:intron | 20.0% |
| !!! | AATCTATGTCATACTTTTTA+GGG | + | chr4_4:77719269-77719288 | None:intergenic | 20.0% |
| !!! | TAATCTATGTCATACTTTTT+AGG | + | chr4_4:77719270-77719289 | None:intergenic | 20.0% |
| !! | CATAGATTATCAAAAAAGAA+AGG | - | chr4_4:77719281-77719300 | Msa0705160:intron | 20.0% |
| !! | TTTTCATCACAATTACTTTC+TGG | - | chr4_4:77714540-77714559 | Msa0705160:CDS | 25.0% |
| ! | TTTCATCACAATTACTTTCT+GGG | - | chr4_4:77714541-77714560 | Msa0705160:CDS | 25.0% |
| ! | TAAACTTGAATTTCCAAACT+TGG | - | chr4_4:77714583-77714602 | Msa0705160:CDS | 25.0% |
| !!! | CAATAGCATTGATTAAATAG+AGG | - | chr4_4:77714614-77714633 | Msa0705160:CDS | 25.0% |
| ! | AAAAATAAGGAAAAGAGATG+AGG | - | chr4_4:77715010-77715029 | Msa0705160:intron | 25.0% |
| ! | AAAATAAGGAAAAGAGATGA+GGG | - | chr4_4:77715011-77715030 | Msa0705160:intron | 25.0% |
| ! | TGAGAAAGAGTAGAATTATT+TGG | - | chr4_4:77715079-77715098 | Msa0705160:intron | 25.0% |
| ! | AAACTAAAACTTTCCTACAT+GGG | + | chr4_4:77715156-77715175 | None:intergenic | 25.0% |
| !! | TGTAGAAGAGATTGAATTTT+TGG | - | chr4_4:77715302-77715321 | Msa0705160:intron | 25.0% |
| !! | GTAGAAGAGATTGAATTTTT+GGG | - | chr4_4:77715303-77715322 | Msa0705160:intron | 25.0% |
| !!! | ATATCTGTTTTAACTTGAAG+AGG | + | chr4_4:77715775-77715794 | None:intergenic | 25.0% |
| ! | CTAAGTTAAGGATTCAAAAA+AGG | + | chr4_4:77716012-77716031 | None:intergenic | 25.0% |
| ! | ATAAACCAATAGGGATATTA+CGG | + | chr4_4:77716124-77716143 | None:intergenic | 25.0% |
| !!! | AATATCCCTATTGGTTTATT+TGG | - | chr4_4:77716125-77716144 | Msa0705160:intron | 25.0% |
| ! | CAAAACAAGAGAATGAAATT+AGG | + | chr4_4:77716561-77716580 | None:intergenic | 25.0% |
| ! | CAATCTGTATAATGTAAACA+TGG | + | chr4_4:77716659-77716678 | None:intergenic | 25.0% |
| ! | CATGTTTACATTATACAGAT+TGG | - | chr4_4:77716657-77716676 | Msa0705160:intron | 25.0% |
| ! | AACTATTGCTTCTTTCATTA+AGG | - | chr4_4:77716738-77716757 | Msa0705160:intron | 25.0% |
| ! | AAGCAGAACAAATAAAAGTT+GGG | + | chr4_4:77716783-77716802 | None:intergenic | 25.0% |
| ! | AAAGCAGAACAAATAAAAGT+TGG | + | chr4_4:77716784-77716803 | None:intergenic | 25.0% |
| ! | TAGAAGAAAATGTAAGAAGT+AGG | - | chr4_4:77717210-77717229 | Msa0705160:CDS | 25.0% |
| ! | AGAAGAAAATGTAAGAAGTA+GGG | - | chr4_4:77717211-77717230 | Msa0705160:CDS | 25.0% |
| !!! | ATGCTATTTCAACTTTCAAT+TGG | - | chr4_4:77717957-77717976 | Msa0705160:intron | 25.0% |
| ! | AATCTTATGTGGTTAAGAAA+TGG | - | chr4_4:77717983-77718002 | Msa0705160:intron | 25.0% |
| !!! | TTTCACAACGTATTTTTTTG+TGG | - | chr4_4:77718319-77718338 | Msa0705160:CDS | 25.0% |
| ! | CATCAAATGATATTGAAACA+TGG | - | chr4_4:77718409-77718428 | Msa0705160:intron | 25.0% |
| ! | ATTTATTGTGAGCCATATTT+GGG | - | chr4_4:77719053-77719072 | Msa0705160:intron | 25.0% |
| ! | TCAATTAGAGATCTTACTAA+TGG | - | chr4_4:77719099-77719118 | Msa0705160:intron | 25.0% |
| ! | CAATTAGAGATCTTACTAAT+GGG | - | chr4_4:77719100-77719119 | Msa0705160:intron | 25.0% |
| !! | TTATATTTCAGGTGAAACAT+AGG | - | chr4_4:77719130-77719149 | Msa0705160:intron | 25.0% |
| ! | AAAAATCACTAAAATCACTG+CGG | - | chr4_4:77719484-77719503 | Msa0705160:five_prime_UTR | 25.0% |
| AAGAATGATTTCTCTCCAAT+TGG | - | chr4_4:77714479-77714498 | Msa0705160:CDS | 30.0% | |
| TGTGATGAAAAATTCATACC+TGG | + | chr4_4:77714531-77714550 | None:intergenic | 30.0% | |
| ! | AGGAATTTCTCAACTTGTTT+AGG | - | chr4_4:77714985-77715004 | Msa0705160:intron | 30.0% |
| !! | ATTGGATCAAGGTATTGAAA+GGG | + | chr4_4:77715119-77715138 | None:intergenic | 30.0% |
| !! | AATTGGATCAAGGTATTGAA+AGG | + | chr4_4:77715120-77715139 | None:intergenic | 30.0% |
| CAAACTAAAACTTTCCTACA+TGG | + | chr4_4:77715157-77715176 | None:intergenic | 30.0% | |
| !!! | CATGTAGGAAAGTTTTAGTT+TGG | - | chr4_4:77715155-77715174 | Msa0705160:intron | 30.0% |
| ACTTGTGATTATATGTTTGG+AGG | - | chr4_4:77715245-77715264 | Msa0705160:intron | 30.0% | |
| TAAATGGAGTAAGATACTCA+AGG | - | chr4_4:77715412-77715431 | Msa0705160:intron | 30.0% | |
| ATCTCAATGTTTGGTTATGT+GGG | - | chr4_4:77715579-77715598 | Msa0705160:intron | 30.0% | |
| TCAAGTTAAAACAGATATGC+TGG | - | chr4_4:77715777-77715796 | Msa0705160:CDS | 30.0% | |
| AACAGATATGCTGGAAATTA+AGG | - | chr4_4:77715786-77715805 | Msa0705160:intron | 30.0% | |
| ACAGATATGCTGGAAATTAA+GGG | - | chr4_4:77715787-77715806 | Msa0705160:intron | 30.0% | |
| TTCGACCAAATAAACCAATA+GGG | + | chr4_4:77716133-77716152 | None:intergenic | 30.0% | |
| TTTCGACCAAATAAACCAAT+AGG | + | chr4_4:77716134-77716153 | None:intergenic | 30.0% | |
| AAAATTATCTTCCACTTCCA+AGG | + | chr4_4:77716200-77716219 | None:intergenic | 30.0% | |
| TGAGATCTTCAAAAGATATC+CGG | - | chr4_4:77716219-77716238 | Msa0705160:intron | 30.0% | |
| TAGATATTGCTTCCACTATA+AGG | + | chr4_4:77716687-77716706 | None:intergenic | 30.0% | |
| ATTGCTTACACATGAATAGA+AGG | - | chr4_4:77717333-77717352 | Msa0705160:intron | 30.0% | |
| !!! | ATTGGTTTTTCCATCCAAAA+AGG | + | chr4_4:77717387-77717406 | None:intergenic | 30.0% |
| ATCAAAGCAATTATGGTGTA+CGG | + | chr4_4:77717696-77717715 | None:intergenic | 30.0% | |
| TGGCAAAATCAAAGCAATTA+TGG | + | chr4_4:77717703-77717722 | None:intergenic | 30.0% | |
| ATATACTAAGCTTCCATTCA+TGG | + | chr4_4:77717887-77717906 | None:intergenic | 30.0% | |
| TCAATTGGCTAAATCTTATG+TGG | - | chr4_4:77717972-77717991 | Msa0705160:intron | 30.0% | |
| AAGTTCTATAGCATTCCATT+TGG | - | chr4_4:77718044-77718063 | Msa0705160:intron | 30.0% | |
| !! | TAGAAAAGTATCCAACCAAA+TGG | + | chr4_4:77718062-77718081 | None:intergenic | 30.0% |
| !!! | AGCTTATTTTTGAAATCTGC+CGG | + | chr4_4:77718171-77718190 | None:intergenic | 30.0% |
| TATTGTATGTTTGCATGAGA+TGG | + | chr4_4:77718276-77718295 | None:intergenic | 30.0% | |
| ! | TTTTATCCAATCACCAGTAT+CGG | - | chr4_4:77718342-77718361 | Msa0705160:intron | 30.0% |
| ! | GTTTTATATTTACCGCTTCA+TGG | - | chr4_4:77718509-77718528 | Msa0705160:CDS | 30.0% |
| ! | GTCAAACATTTACTCTAAAG+AGG | - | chr4_4:77718543-77718562 | Msa0705160:CDS | 30.0% |
| ! | AAAGAAAAAAGTGGCTTGTA+AGG | + | chr4_4:77718777-77718796 | None:intergenic | 30.0% |
| CATTTATTGTGAGCCATATT+TGG | - | chr4_4:77719052-77719071 | Msa0705160:intron | 30.0% | |
| ! | CCATTATGAGTTGAACCAAT+TGG | + | chr4_4:77714497-77714516 | None:intergenic | 35.0% |
| ! | CCAATTGGTTCAACTCATAA+TGG | - | chr4_4:77714494-77714513 | Msa0705160:CDS | 35.0% |
| ! | ATTGGTTCAACTCATAATGG+TGG | - | chr4_4:77714497-77714516 | Msa0705160:CDS | 35.0% |
| ATGAAAAATTCATACCTGGC+TGG | + | chr4_4:77714527-77714546 | None:intergenic | 35.0% | |
| GATTAAATAGAGGGCCAAAA+AGG | - | chr4_4:77714624-77714643 | Msa0705160:CDS | 35.0% | |
| !! | TGCTTAGGTTTGTTGCTTTA+GGG | + | chr4_4:77714725-77714744 | None:intergenic | 35.0% |
| ! | TAAGTGTCTGTGTTTTCTAG+AGG | - | chr4_4:77714945-77714964 | Msa0705160:intron | 35.0% |
| CCAAAAAAGGAATTGGATCA+AGG | + | chr4_4:77715130-77715149 | None:intergenic | 35.0% | |
| !!! | CCTTGATCCAATTCCTTTTT+TGG | - | chr4_4:77715127-77715146 | Msa0705160:intron | 35.0% |
| !!! | GTAGGAAAGTTTTAGTTTGG+CGG | - | chr4_4:77715158-77715177 | Msa0705160:intron | 35.0% |
| !!! | TAGGAAAGTTTTAGTTTGGC+GGG | - | chr4_4:77715159-77715178 | Msa0705160:intron | 35.0% |
| !!! | AATTTTTGGGTTGCTCTAGA+TGG | - | chr4_4:77715316-77715335 | Msa0705160:intron | 35.0% |
| !!! | ATTTTTGGGTTGCTCTAGAT+GGG | - | chr4_4:77715317-77715336 | Msa0705160:intron | 35.0% |
| TACAACACATGGTTAAACTC+AGG | + | chr4_4:77715440-77715459 | None:intergenic | 35.0% | |
| ! | TCAAGGTTTGCTTATGATGT+TGG | - | chr4_4:77715480-77715499 | Msa0705160:intron | 35.0% |
| ACATTGAGATCCACATTTGA+CGG | + | chr4_4:77715569-77715588 | None:intergenic | 35.0% | |
| CAAATGTGGATCTCAATGTT+TGG | - | chr4_4:77715570-77715589 | Msa0705160:intron | 35.0% | |
| GATCTCAATGTTTGGTTATG+TGG | - | chr4_4:77715578-77715597 | Msa0705160:intron | 35.0% | |
| ATGGAGAAATATGAGTCTGA+AGG | - | chr4_4:77715615-77715634 | Msa0705160:intron | 35.0% | |
| AATATGAGTCTGAAGGCAAA+TGG | - | chr4_4:77715622-77715641 | Msa0705160:intron | 35.0% | |
| ACTCTCAGCTAGCAATAAAA+AGG | - | chr4_4:77715662-77715681 | Msa0705160:intron | 35.0% | |
| CTCTCAGCTAGCAATAAAAA+GGG | - | chr4_4:77715663-77715682 | Msa0705160:intron | 35.0% | |
| AGTAACAAGATTTACAGCCA+CGG | + | chr4_4:77715722-77715741 | None:intergenic | 35.0% | |
| ! | AACCTTTTGATAGACCTTTC+CGG | + | chr4_4:77715814-77715833 | None:intergenic | 35.0% |
| ATAAGGGTCATGCTAAGTTA+AGG | + | chr4_4:77716024-77716043 | None:intergenic | 35.0% | |
| TGGTTTATTTGGTCGAAATG+CGG | - | chr4_4:77716136-77716155 | Msa0705160:intron | 35.0% | |
| !! | CGAGTTTTGTGAATTATCCT+TGG | - | chr4_4:77716180-77716199 | Msa0705160:intron | 35.0% |
| TTGTGAATTATCCTTGGAAG+TGG | - | chr4_4:77716186-77716205 | Msa0705160:intron | 35.0% | |
| GAGATCTTCAAAAGATATCC+GGG | - | chr4_4:77716220-77716239 | Msa0705160:intron | 35.0% | |
| AGATCTTCAAAAGATATCCG+GGG | - | chr4_4:77716221-77716240 | Msa0705160:intron | 35.0% | |
| TAAAGTCTCGTCTTGTGTAT+TGG | + | chr4_4:77716273-77716292 | None:intergenic | 35.0% | |
| ! | GGCTTTTTGCAAAAAGATGA+CGG | - | chr4_4:77716305-77716324 | Msa0705160:intron | 35.0% |
| ! | TATTTTCCGTGATCTGTGAT+TGG | - | chr4_4:77716394-77716413 | Msa0705160:intron | 35.0% |
| ! | ATGAACCTTGTTTGCAGAAT+AGG | - | chr4_4:77716431-77716450 | Msa0705160:intron | 35.0% |
| TATGTCCTATTCTGCAAACA+AGG | + | chr4_4:77716439-77716458 | None:intergenic | 35.0% | |
| AAGCATACACTGTCAAAATG+AGG | + | chr4_4:77716634-77716653 | None:intergenic | 35.0% | |
| ! | AGCAATATCTAGCTTGAATG+AGG | - | chr4_4:77716696-77716715 | Msa0705160:intron | 35.0% |
| AAGGTGACTACCTTGTAATA+TGG | - | chr4_4:77717020-77717039 | Msa0705160:intron | 35.0% | |
| TTACATCTATACTCACCTAG+TGG | - | chr4_4:77717098-77717117 | Msa0705160:intron | 35.0% | |
| TACATCTATACTCACCTAGT+GGG | - | chr4_4:77717099-77717118 | Msa0705160:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+GGG | + | chr4_4:77717463-77717482 | None:intergenic | 35.0% | |
| ACCTTCTACATAGAGTTCAA+AGG | + | chr4_4:77717464-77717483 | None:intergenic | 35.0% | |
| ! | AGAGCTAGTTTAGAAGAAGA+AGG | - | chr4_4:77717743-77717762 | Msa0705160:intron | 35.0% |
| TCAAGCTTCTTTGTGCAAAT+AGG | + | chr4_4:77717803-77717822 | None:intergenic | 35.0% | |
| ! | TGACTTGTGATTTCCATGAA+TGG | - | chr4_4:77717871-77717890 | Msa0705160:intron | 35.0% |
| CTTAGTATATCTTGACCCTT+TGG | - | chr4_4:77717897-77717916 | Msa0705160:intron | 35.0% | |
| TCTATAGCATTCCATTTGGT+TGG | - | chr4_4:77718048-77718067 | Msa0705160:intron | 35.0% | |
| AAATAAGCTGTCAGCAAAAC+TGG | - | chr4_4:77718182-77718201 | Msa0705160:CDS | 35.0% | |
| ATCTAGTGGAAAACTGATCA+AGG | - | chr4_4:77718215-77718234 | Msa0705160:CDS | 35.0% | |
| ACTTTACAACCCTATCCTAT+GGG | - | chr4_4:77718368-77718387 | Msa0705160:intron | 35.0% | |
| CTACATTAACCCATAGGATA+GGG | + | chr4_4:77718380-77718399 | None:intergenic | 35.0% | |
| ATGTTCCTACATTAACCCAT+AGG | + | chr4_4:77718386-77718405 | None:intergenic | 35.0% | |
| CTTAGTATTTGTCCATGAAG+CGG | + | chr4_4:77718524-77718543 | None:intergenic | 35.0% | |
| ! | CATTTACTCTAAAGAGGTAG+TGG | - | chr4_4:77718549-77718568 | Msa0705160:CDS | 35.0% |
| !! | AGAGGTAGTGGATTTGTATT+CGG | - | chr4_4:77718561-77718580 | Msa0705160:CDS | 35.0% |
| GAAAAACCAAAGTCTCACAT+TGG | - | chr4_4:77718583-77718602 | Msa0705160:CDS | 35.0% | |
| !! | TAACTTCTAAGGCTCTACTT+AGG | + | chr4_4:77718621-77718640 | None:intergenic | 35.0% |
| ATGAGAATAGCACCCAAATA+TGG | + | chr4_4:77719068-77719087 | None:intergenic | 35.0% | |
| !!! | TTGGGTGCTATTCTCATTTT+TGG | - | chr4_4:77719071-77719090 | Msa0705160:intron | 35.0% |
| ! | TGGGTTGAGCTTTATATTTC+AGG | - | chr4_4:77719119-77719138 | Msa0705160:intron | 35.0% |
| TCCTCTATCTGAATATGCTT+GGG | + | chr4_4:77719172-77719191 | None:intergenic | 35.0% | |
| TTCCTCTATCTGAATATGCT+TGG | + | chr4_4:77719173-77719192 | None:intergenic | 35.0% | |
| AAACCGACCCATGTTATTAT+TGG | - | chr4_4:77719194-77719213 | Msa0705160:intron | 35.0% | |
| CTTCCAATAATAACATGGGT+CGG | + | chr4_4:77719200-77719219 | None:intergenic | 35.0% | |
| GACCCATGTTATTATTGGAA+GGG | - | chr4_4:77719199-77719218 | Msa0705160:intron | 35.0% | |
| CTCCCTTCCAATAATAACAT+GGG | + | chr4_4:77719204-77719223 | None:intergenic | 35.0% | |
| AAGCCTCTATTAAATCTGAC+AGG | - | chr4_4:77719229-77719248 | Msa0705160:intron | 35.0% | |
| AGCCTCTATTAAATCTGACA+GGG | - | chr4_4:77719230-77719249 | Msa0705160:intron | 35.0% | |
| AAAGTCCATGTCTTTACAAG+AGG | - | chr4_4:77719332-77719351 | Msa0705160:intron | 35.0% | |
| GATTACCTCTTGTAAAGACA+TGG | + | chr4_4:77719340-77719359 | None:intergenic | 35.0% | |
| !! | CTGCTTAGGTTTGTTGCTTT+AGG | + | chr4_4:77714726-77714745 | None:intergenic | 40.0% |
| TGCGATTCTGACGCAATTTA+GGG | - | chr4_4:77714852-77714871 | Msa0705160:intron | 40.0% | |
| !! | TGTCTGTGTTTTCTAGAGGA+GGG | - | chr4_4:77714949-77714968 | Msa0705160:intron | 40.0% |
| !! | TGTTTTCTAGAGGAGGGTAA+GGG | - | chr4_4:77714955-77714974 | Msa0705160:intron | 40.0% |
| TGGGTAGCCAAAAAAGGAAT+TGG | + | chr4_4:77715137-77715156 | None:intergenic | 40.0% | |
| !!! | AGGAAAGTTTTAGTTTGGCG+GGG | - | chr4_4:77715160-77715179 | Msa0705160:intron | 40.0% |
| ATAATAGTTCCATCTTGCCC+TGG | + | chr4_4:77715198-77715217 | None:intergenic | 40.0% | |
| ACAGAAATGGTCATCAGAAG+AGG | - | chr4_4:77715349-77715368 | Msa0705160:intron | 40.0% | |
| TTGAGCGGATATACAACACA+TGG | + | chr4_4:77715451-77715470 | None:intergenic | 40.0% | |
| CCTTGAGATCGATATTTGAG+CGG | + | chr4_4:77715466-77715485 | None:intergenic | 40.0% | |
| AAATGTTGGACCGTCAAATG+TGG | - | chr4_4:77715556-77715575 | Msa0705160:intron | 40.0% | |
| CAATGTTTGGTTATGTGGGT+TGG | - | chr4_4:77715583-77715602 | Msa0705160:intron | 40.0% | |
| !! | TTTGGTTATGTGGGTTGGAT+AGG | - | chr4_4:77715588-77715607 | Msa0705160:intron | 40.0% |
| !! | TGTGGGTTGGATAGGATAAA+TGG | - | chr4_4:77715596-77715615 | Msa0705160:intron | 40.0% |
| ! | AATAAAAAGGGTGCGTCATC+AGG | - | chr4_4:77715675-77715694 | Msa0705160:intron | 40.0% |
| TATGCTGGAAATTAAGGGTC+CGG | - | chr4_4:77715792-77715811 | Msa0705160:intron | 40.0% | |
| GGAAAGGTCTATCAAAAGGT+TGG | - | chr4_4:77715813-77715832 | Msa0705160:intron | 40.0% | |
| ATCGACCGTAATATCCCTAT+TGG | - | chr4_4:77716116-77716135 | Msa0705160:intron | 40.0% | |
| GGTTTATTTGGTCGAAATGC+GGG | - | chr4_4:77716137-77716156 | Msa0705160:intron | 40.0% | |
| CAAAACTCGATTCCACCAAA+CGG | + | chr4_4:77716169-77716188 | None:intergenic | 40.0% | |
| GATCTTCAAAAGATATCCGG+GGG | - | chr4_4:77716222-77716241 | Msa0705160:intron | 40.0% | |
| CCTAATTGAAAGACAATCGC+CGG | + | chr4_4:77716480-77716499 | None:intergenic | 40.0% | |
| CGGCGATTGTCTTTCAATTA+GGG | - | chr4_4:77716478-77716497 | Msa0705160:intron | 40.0% | |
| AAGCATACTAGCAAGGAAAC+TGG | + | chr4_4:77716537-77716556 | None:intergenic | 40.0% | |
| ATTAGGCAAGCATACTAGCA+AGG | + | chr4_4:77716544-77716563 | None:intergenic | 40.0% | |
| CAGATTGGACAACCTTATAG+TGG | - | chr4_4:77716672-77716691 | Msa0705160:intron | 40.0% | |
| GTGACTACCTTGTAATATGG+AGG | - | chr4_4:77717023-77717042 | Msa0705160:intron | 40.0% | |
| CCTATGACCTCCATATTACA+AGG | + | chr4_4:77717033-77717052 | None:intergenic | 40.0% | |
| CCTTGTAATATGGAGGTCAT+AGG | - | chr4_4:77717030-77717049 | Msa0705160:intron | 40.0% | |
| CATTTATTACTCCAGTGCAC+AGG | + | chr4_4:77717127-77717146 | None:intergenic | 40.0% | |
| CAATTCTACGACTGCAAACA+AGG | + | chr4_4:77717188-77717207 | None:intergenic | 40.0% | |
| ACACATGAATAGAAGGCAAG+CGG | - | chr4_4:77717340-77717359 | Msa0705160:intron | 40.0% | |
| TGGATGGAAAAACCAATCCT+CGG | - | chr4_4:77717390-77717409 | Msa0705160:intron | 40.0% | |
| AATGTTGTGTTTCCGAGGAT+TGG | + | chr4_4:77717405-77717424 | None:intergenic | 40.0% | |
| AACACAACATTCATGGACCT+AGG | - | chr4_4:77717414-77717433 | Msa0705160:intron | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr4_4:77717434-77717453 | None:intergenic | 40.0% | |
| CCCTTTGAACTCTATGTAGA+AGG | - | chr4_4:77717460-77717479 | Msa0705160:intron | 40.0% | |
| !! | CGGAAAGTGTCAAAAGCAAA+TGG | - | chr4_4:77717507-77717526 | Msa0705160:intron | 40.0% |
| AGAACACGCTTTCTCATGTT+TGG | - | chr4_4:77717551-77717570 | Msa0705160:intron | 40.0% | |
| ! | TCATGTTTGGCCACTTTGTT+TGG | - | chr4_4:77717564-77717583 | Msa0705160:intron | 40.0% |
| TATCACCACTTGTGGGATTA+GGG | + | chr4_4:77717632-77717651 | None:intergenic | 40.0% | |
| AGCAATTATGGTGTACGGAT+GGG | + | chr4_4:77717691-77717710 | None:intergenic | 40.0% | |
| AAGCAATTATGGTGTACGGA+TGG | + | chr4_4:77717692-77717711 | None:intergenic | 40.0% | |
| !! | AAACTAGCTCTGCTTCATGA+TGG | + | chr4_4:77717734-77717753 | None:intergenic | 40.0% |
| TTCACTTGTCTTTCAGCACA+TGG | + | chr4_4:77717780-77717799 | None:intergenic | 40.0% | |
| TTTGCACAAAGAAGCTTGAG+TGG | - | chr4_4:77717804-77717823 | Msa0705160:intron | 40.0% | |
| CACAGTAACCAGGTTTCAAA+AGG | + | chr4_4:77717853-77717872 | None:intergenic | 40.0% | |
| AATCACAAGTCACAGTAACC+AGG | + | chr4_4:77717863-77717882 | None:intergenic | 40.0% | |
| TAGATCGCATTCTACCACAA+GGG | + | chr4_4:77717935-77717954 | None:intergenic | 40.0% | |
| ATAGATCGCATTCTACCACA+AGG | + | chr4_4:77717936-77717955 | None:intergenic | 40.0% | |
| CACTTTACAACCCTATCCTA+TGG | - | chr4_4:77718367-77718386 | Msa0705160:intron | 40.0% | |
| CCTACATTAACCCATAGGAT+AGG | + | chr4_4:77718381-77718400 | None:intergenic | 40.0% | |
| ! | CCTATCCTATGGGTTAATGT+AGG | - | chr4_4:77718378-77718397 | Msa0705160:intron | 40.0% |
| AAGATAGGGGATGTAAAGAC+AGG | + | chr4_4:77718461-77718480 | None:intergenic | 40.0% | |
| !! | ATCCCCTATCTTTTGAGAGT+GGG | - | chr4_4:77718469-77718488 | Msa0705160:intron | 40.0% |
| AACCCACTCTCAAAAGATAG+GGG | + | chr4_4:77718474-77718493 | None:intergenic | 40.0% | |
| GAACCCACTCTCAAAAGATA+GGG | + | chr4_4:77718475-77718494 | None:intergenic | 40.0% | |
| AGAACCCACTCTCAAAAGAT+AGG | + | chr4_4:77718476-77718495 | None:intergenic | 40.0% | |
| TCTCACATTGGCCAGAAATA+AGG | - | chr4_4:77718595-77718614 | Msa0705160:CDS | 40.0% | |
| !! | CTCTACTTAGGCCTTATTTC+TGG | + | chr4_4:77718609-77718628 | None:intergenic | 40.0% |
| TAGAGCCTTAGAAGTTAGCT+TGG | - | chr4_4:77718624-77718643 | Msa0705160:five_prime_UTR | 40.0% | |
| ACACTACTGAACTTGGTTCA+TGG | + | chr4_4:77718673-77718692 | None:intergenic | 40.0% | |
| TGAACCAAGTTCAGTAGTGT+TGG | - | chr4_4:77718673-77718692 | Msa0705160:intron | 40.0% | |
| GAACCAAGTTCAGTAGTGTT+GGG | - | chr4_4:77718674-77718693 | Msa0705160:intron | 40.0% | |
| AAAAACTCGTGCGTGAGATA+AGG | - | chr4_4:77718716-77718735 | Msa0705160:intron | 40.0% | |
| ! | GAAAAAAGTGGCTTGTAAGG+AGG | + | chr4_4:77718774-77718793 | None:intergenic | 40.0% |
| CTATCTGAATATGCTTGGGT+AGG | + | chr4_4:77719168-77719187 | None:intergenic | 40.0% | |
| ACCCAAGCATATTCAGATAG+AGG | - | chr4_4:77719168-77719187 | Msa0705160:intron | 40.0% | |
| CGACCCATGTTATTATTGGA+AGG | - | chr4_4:77719198-77719217 | Msa0705160:intron | 40.0% | |
| CCTCCCTTCCAATAATAACA+TGG | + | chr4_4:77719205-77719224 | None:intergenic | 40.0% | |
| CCATGTTATTATTGGAAGGG+AGG | - | chr4_4:77719202-77719221 | Msa0705160:intron | 40.0% | |
| GCCTCTATTAAATCTGACAG+GGG | - | chr4_4:77719231-77719250 | Msa0705160:intron | 40.0% | |
| ACCCCTGTCAGATTTAATAG+AGG | + | chr4_4:77719235-77719254 | None:intergenic | 40.0% | |
| TCTATTAAATCTGACAGGGG+TGG | - | chr4_4:77719234-77719253 | Msa0705160:intron | 40.0% | |
| CTATTAAATCTGACAGGGGT+GGG | - | chr4_4:77719235-77719254 | Msa0705160:intron | 40.0% | |
| TATTAAATCTGACAGGGGTG+GGG | - | chr4_4:77719236-77719255 | Msa0705160:intron | 40.0% | |
| AAGAAAGGCTGAGATAGACT+TGG | - | chr4_4:77719296-77719315 | Msa0705160:intron | 40.0% | |
| AAAATTCATACCTGGCTGGC+TGG | + | chr4_4:77714523-77714542 | None:intergenic | 45.0% | |
| TATTGCTTGCTCGCCAAGTT+TGG | + | chr4_4:77714599-77714618 | None:intergenic | 45.0% | |
| AGAATGTGGATTCGCTGCTT+AGG | + | chr4_4:77714740-77714759 | None:intergenic | 45.0% | |
| CTGCGATTCTGACGCAATTT+AGG | - | chr4_4:77714851-77714870 | Msa0705160:intron | 45.0% | |
| !! | GTGTCTGTGTTTTCTAGAGG+AGG | - | chr4_4:77714948-77714967 | Msa0705160:intron | 45.0% |
| !! | GTGTTTTCTAGAGGAGGGTA+AGG | - | chr4_4:77714954-77714973 | Msa0705160:intron | 45.0% |
| AGGAGGGTAAGGGAATGAAT+AGG | - | chr4_4:77714965-77714984 | Msa0705160:intron | 45.0% | |
| CCTACATGGGTAGCCAAAAA+AGG | + | chr4_4:77715143-77715162 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTGGCTACCCATGT+AGG | - | chr4_4:77715140-77715159 | Msa0705160:intron | 45.0% |
| !! | TGGGTGCTACTAGACAGAAA+TGG | - | chr4_4:77715336-77715355 | Msa0705160:intron | 45.0% |
| ATGGTCATCAGAAGAGGAAG+CGG | - | chr4_4:77715355-77715374 | Msa0705160:intron | 45.0% | |
| AAAGCTGGAGTTGTGAAGCA+TGG | - | chr4_4:77715383-77715402 | Msa0705160:intron | 45.0% | |
| TGAAGCATGGCGTAGGTAAA+TGG | - | chr4_4:77715396-77715415 | Msa0705160:intron | 45.0% | |
| CCGCTCAAATATCGATCTCA+AGG | - | chr4_4:77715463-77715482 | Msa0705160:intron | 45.0% | |
| AAGGCAAATGGATCATCCTC+CGG | - | chr4_4:77715634-77715653 | Msa0705160:intron | 45.0% | |
| TGGAAATTAAGGGTCCGGAA+AGG | - | chr4_4:77715797-77715816 | Msa0705160:intron | 45.0% | |
| GTCCGGAAAGGTCTATCAAA+AGG | - | chr4_4:77715809-77715828 | Msa0705160:intron | 45.0% | |
| AAGACGAGACTTTACCACAG+TGG | - | chr4_4:77716279-77716298 | Msa0705160:intron | 45.0% | |
| GTGTTGCCAATCACAGATCA+CGG | + | chr4_4:77716403-77716422 | None:intergenic | 45.0% | |
| CCGGCGATTGTCTTTCAATT+AGG | - | chr4_4:77716477-77716496 | Msa0705160:intron | 45.0% | |
| CTGGATGATCTTAACACGCT+TGG | + | chr4_4:77716518-77716537 | None:intergenic | 45.0% | |
| ! | TCTAGCTTGAATGAGGTCGA+TGG | - | chr4_4:77716703-77716722 | Msa0705160:intron | 45.0% |
| CACATGAATAGAAGGCAAGC+GGG | - | chr4_4:77717341-77717360 | Msa0705160:intron | 45.0% | |
| CCATGAATGTTGTGTTTCCG+AGG | + | chr4_4:77717410-77717429 | None:intergenic | 45.0% | |
| CCTCGGAAACACAACATTCA+TGG | - | chr4_4:77717407-77717426 | Msa0705160:intron | 45.0% | |
| TGTAGAAGGTTAACACCCTC+TGG | - | chr4_4:77717474-77717493 | Msa0705160:intron | 45.0% | |
| ! | TTTGTTTGGCGCGGCTTTTA+GGG | - | chr4_4:77717578-77717597 | Msa0705160:intron | 45.0% |
| ATCACCACTTGTGGGATTAG+GGG | + | chr4_4:77717631-77717650 | None:intergenic | 45.0% | |
| GTATCACCACTTGTGGGATT+AGG | + | chr4_4:77717633-77717652 | None:intergenic | 45.0% | |
| ATGCATGTGTGGACTTGACT+GGG | + | chr4_4:77717656-77717675 | None:intergenic | 45.0% | |
| AGGAGGAAAACATGCATGTG+TGG | + | chr4_4:77717667-77717686 | None:intergenic | 45.0% | |
| ATTATGGTGTACGGATGGGT+AGG | + | chr4_4:77717687-77717706 | None:intergenic | 45.0% | |
| !!! | ACTCGAAGCCTTTTGAAACC+TGG | - | chr4_4:77717842-77717861 | Msa0705160:intron | 45.0% |
| AGATCGCATTCTACCACAAG+GGG | + | chr4_4:77717934-77717953 | None:intergenic | 45.0% | |
| TAAGCTGTCAGCAAAACTGG+TGG | - | chr4_4:77718185-77718204 | Msa0705160:CDS | 45.0% | |
| ! | CTGGTGGATCTTGTATCTAG+TGG | - | chr4_4:77718201-77718220 | Msa0705160:CDS | 45.0% |
| ! | GTTGTAAAGTGCACCGATAC+TGG | + | chr4_4:77718358-77718377 | None:intergenic | 45.0% |
| GATATCCCCATTTGTAGCAG+AGG | - | chr4_4:77718431-77718450 | Msa0705160:intron | 45.0% | |
| !! | CATCCCCTATCTTTTGAGAG+TGG | - | chr4_4:77718468-77718487 | Msa0705160:intron | 45.0% |
| TTCTGGCCAATGTGAGACTT+TGG | + | chr4_4:77718592-77718611 | None:intergenic | 45.0% | |
| ! | AGCCTTAGAAGTTAGCTTGG+TGG | - | chr4_4:77718627-77718646 | Msa0705160:five_prime_UTR | 45.0% |
| CTCCACCAAGCTAACTTCTA+AGG | + | chr4_4:77718632-77718651 | None:intergenic | 45.0% | |
| ACACCCAACACTACTGAACT+TGG | + | chr4_4:77718680-77718699 | None:intergenic | 45.0% | |
| ATTAAATCTGACAGGGGTGG+GGG | - | chr4_4:77719237-77719256 | Msa0705160:intron | 45.0% | |
| GGCTGAGATAGACTTGGAAT+TGG | - | chr4_4:77719302-77719321 | Msa0705160:intron | 45.0% | |
| AGAAGCTGAAGAGGCAACAA+AGG | - | chr4_4:77719404-77719423 | Msa0705160:intron | 45.0% | |
| TTCTCACCCGTAACTTCCGA+CGG | + | chr4_4:77714774-77714793 | None:intergenic | 50.0% | |
| TGCGTCAGAATCGCAGTTCA+CGG | + | chr4_4:77714847-77714866 | None:intergenic | 50.0% | |
| GCCATAGGAGAGAAAGGGAA+GGG | - | chr4_4:77714876-77714895 | Msa0705160:intron | 50.0% | |
| TCCCTTCCCTTTCTCTCCTA+TGG | + | chr4_4:77714880-77714899 | None:intergenic | 50.0% | |
| TAGGAGAGAAAGGGAAGGGA+AGG | - | chr4_4:77714880-77714899 | Msa0705160:intron | 50.0% | |
| AGGAGAGAAAGGGAAGGGAA+GGG | - | chr4_4:77714881-77714900 | Msa0705160:intron | 50.0% | |
| CGGGGAAAAATAGTTCGCCA+GGG | - | chr4_4:77715178-77715197 | Msa0705160:intron | 50.0% | |
| AATAGTTCGCCAGGGCAAGA+TGG | - | chr4_4:77715186-77715205 | Msa0705160:intron | 50.0% | |
| AGGCAAATGGATCATCCTCC+GGG | - | chr4_4:77715635-77715654 | Msa0705160:intron | 50.0% | |
| AAATGCGGGAAAGCTCCGTT+TGG | - | chr4_4:77716151-77716170 | Msa0705160:intron | 50.0% | |
| CACTAGTCACAATGAACCCC+CGG | + | chr4_4:77716241-77716260 | None:intergenic | 50.0% | |
| GAGACTTTACCACAGTGGAG+CGG | - | chr4_4:77716284-77716303 | Msa0705160:intron | 50.0% | |
| CTTCATCTGCAAGCGAACCT+TGG | - | chr4_4:77716988-77717007 | Msa0705160:intron | 50.0% | |
| CGAACCTTGGCACATTGGTA+AGG | - | chr4_4:77717001-77717020 | Msa0705160:intron | 50.0% | |
| GTCACCTTACCAATGTGCCA+AGG | + | chr4_4:77717008-77717027 | None:intergenic | 50.0% | |
| ! | CGCTGCTAAGCCTTTTTGGA+TGG | - | chr4_4:77717374-77717393 | Msa0705160:intron | 50.0% |
| ! | TTTGGCCACTTTGTTTGGCG+CGG | - | chr4_4:77717569-77717588 | Msa0705160:intron | 50.0% |
| AAAAGCCGCGCCAAACAAAG+TGG | + | chr4_4:77717577-77717596 | None:intergenic | 50.0% | |
| !! | CTTTGTTTGGCGCGGCTTTT+AGG | - | chr4_4:77717577-77717596 | Msa0705160:intron | 50.0% |
| ! | ATTAGGGGTCGGGGCTTTTA+TGG | + | chr4_4:77717616-77717635 | None:intergenic | 50.0% |
| ! | ACTGGGGTATCACCACTTGT+GGG | + | chr4_4:77717639-77717658 | None:intergenic | 50.0% |
| TGCATGTGTGGACTTGACTG+GGG | + | chr4_4:77717655-77717674 | None:intergenic | 50.0% | |
| CATGCATGTGTGGACTTGAC+TGG | + | chr4_4:77717657-77717676 | None:intergenic | 50.0% | |
| GCTTCATGATGGCATCGTCT+TGG | + | chr4_4:77717723-77717742 | None:intergenic | 50.0% | |
| ! | GGGGCATTTGAAGCACCAAA+GGG | + | chr4_4:77717915-77717934 | None:intergenic | 50.0% |
| !! | AGGGGCATTTGAAGCACCAA+AGG | + | chr4_4:77717916-77717935 | None:intergenic | 50.0% |
| GTAGAACCAATACTGCGCAC+CGG | - | chr4_4:77718149-77718168 | Msa0705160:intron | 50.0% | |
| ! | AGTGCACCGATACTGGTGAT+TGG | + | chr4_4:77718351-77718370 | None:intergenic | 50.0% |
| TCCCCATTTGTAGCAGAGGT+TGG | - | chr4_4:77718435-77718454 | Msa0705160:intron | 50.0% | |
| GCCAACCTCTGCTACAAATG+GGG | + | chr4_4:77718439-77718458 | None:intergenic | 50.0% | |
| GGCCAACCTCTGCTACAAAT+GGG | + | chr4_4:77718440-77718459 | None:intergenic | 50.0% | |
| AGGCCAACCTCTGCTACAAA+TGG | + | chr4_4:77718441-77718460 | None:intergenic | 50.0% | |
| ! | TGCTGCTTAGATACAGCTGC+TGG | - | chr4_4:77718882-77718901 | Msa0705160:intron | 50.0% |
| ! | ACAGCTGCTGGTTGTGAGTT+TGG | - | chr4_4:77718894-77718913 | Msa0705160:intron | 50.0% |
| ! | CAGCTGCTGGTTGTGAGTTT+GGG | - | chr4_4:77718895-77718914 | Msa0705160:intron | 50.0% |
| AGCTGAAGAGGCAACAAAGG+AGG | - | chr4_4:77719407-77719426 | Msa0705160:intron | 50.0% | |
| AGAAGCAGAAGCTGATGCAG+CGG | - | chr4_4:77719440-77719459 | Msa0705160:five_prime_UTR | 50.0% | |
| ATTCTCAACGCAGCAGCCGT+CGG | - | chr4_4:77714755-77714774 | Msa0705160:CDS | 55.0% | |
| ! | GACGCAATTTAGGGCGCCAT+AGG | - | chr4_4:77714861-77714880 | Msa0705160:intron | 55.0% |
| ! | TAGGGCGCCATAGGAGAGAA+AGG | - | chr4_4:77714870-77714889 | Msa0705160:intron | 55.0% |
| ! | AGGGCGCCATAGGAGAGAAA+GGG | - | chr4_4:77714871-77714890 | Msa0705160:intron | 55.0% |
| CGCCATAGGAGAGAAAGGGA+AGG | - | chr4_4:77714875-77714894 | Msa0705160:intron | 55.0% | |
| GCGGGGAAAAATAGTTCGCC+AGG | - | chr4_4:77715177-77715196 | Msa0705160:intron | 55.0% | |
| GGAGTTGTGAAGCATGGCGT+AGG | - | chr4_4:77715389-77715408 | Msa0705160:intron | 55.0% | |
| GGCAAATGGATCATCCTCCG+GGG | - | chr4_4:77715636-77715655 | Msa0705160:intron | 55.0% | |
| TGCTAGCTGAGAGTTGTCCC+CGG | + | chr4_4:77715656-77715675 | None:intergenic | 55.0% | |
| TGCAAAAAGCCGCTCCACTG+TGG | + | chr4_4:77716296-77716315 | None:intergenic | 55.0% | |
| GCAAGCGAACCTTGGCACAT+TGG | - | chr4_4:77716996-77717015 | Msa0705160:intron | 55.0% | |
| CAAGCGAAGAGGCTGTTGCA+AGG | + | chr4_4:77717063-77717082 | None:intergenic | 55.0% | |
| TGCAACAGCCTCTTCGCTTG+CGG | - | chr4_4:77717063-77717082 | Msa0705160:intron | 55.0% | |
| ! | GCTGCGCTGCTAAGCCTTTT+TGG | - | chr4_4:77717370-77717389 | Msa0705160:intron | 55.0% |
| GGTTAACACCCTCTGGTGCT+AGG | - | chr4_4:77717481-77717500 | Msa0705160:intron | 55.0% | |
| TTCCGCTTCCTAGCACCAGA+GGG | + | chr4_4:77717492-77717511 | None:intergenic | 55.0% | |
| TTTCCGCTTCCTAGCACCAG+AGG | + | chr4_4:77717493-77717512 | None:intergenic | 55.0% | |
| ACTTGTGGGATTAGGGGTCG+GGG | + | chr4_4:77717625-77717644 | None:intergenic | 55.0% | |
| CACTTGTGGGATTAGGGGTC+GGG | + | chr4_4:77717626-77717645 | None:intergenic | 55.0% | |
| CCACTTGTGGGATTAGGGGT+CGG | + | chr4_4:77717627-77717646 | None:intergenic | 55.0% | |
| ! | GACTGGGGTATCACCACTTG+TGG | + | chr4_4:77717640-77717659 | None:intergenic | 55.0% |
| ATGGTGTACGGATGGGTAGG+AGG | + | chr4_4:77717684-77717703 | None:intergenic | 55.0% | |
| GGTGCTTCAAATGCCCCTTG+TGG | - | chr4_4:77717918-77717937 | Msa0705160:intron | 55.0% | |
| AATCTGCCGGTGCGCAGTAT+TGG | + | chr4_4:77718158-77718177 | None:intergenic | 55.0% | |
| CTCTTCAGCTTCTGCCATGG+CGG | + | chr4_4:77719397-77719416 | None:intergenic | 55.0% | |
| TGCCTCTTCAGCTTCTGCCA+TGG | + | chr4_4:77719400-77719419 | None:intergenic | 55.0% | |
| AGAGGCAACAAAGGAGGCAG+AGG | - | chr4_4:77719413-77719432 | Msa0705160:intron | 55.0% | |
| ATAATGGTGGCCAGCCAGCC+AGG | - | chr4_4:77714510-77714529 | Msa0705160:CDS | 60.0% | |
| CGGCTGCTGCGTTGAGAATG+TGG | + | chr4_4:77714754-77714773 | None:intergenic | 60.0% | |
| GCAGCAGCCGTCGGAAGTTA+CGG | - | chr4_4:77714764-77714783 | Msa0705160:CDS | 60.0% | |
| CAGCAGCCGTCGGAAGTTAC+GGG | - | chr4_4:77714765-77714784 | Msa0705160:CDS | 60.0% | |
| CGGCGCTACAGTGAGAGGAA+GGG | + | chr4_4:77714827-77714846 | None:intergenic | 60.0% | |
| ACGGCGCTACAGTGAGAGGA+AGG | + | chr4_4:77714828-77714847 | None:intergenic | 60.0% | |
| GTTCACGGCGCTACAGTGAG+AGG | + | chr4_4:77714832-77714851 | None:intergenic | 60.0% | |
| GAGGAAGCGGCTCTCAAAGC+TGG | - | chr4_4:77715368-77715387 | Msa0705160:intron | 60.0% | |
| TAGCTGAGAGTTGTCCCCGG+AGG | + | chr4_4:77715653-77715672 | None:intergenic | 60.0% | |
| ACGGAGTCGTCACGCTGTTC+TGG | + | chr4_4:77715703-77715722 | None:intergenic | 60.0% | |
| AGAACAGCGTGACGACTCCG+TGG | - | chr4_4:77715702-77715721 | Msa0705160:intron | 60.0% | |
| TGCGGGAAAGCTCCGTTTGG+TGG | - | chr4_4:77716154-77716173 | Msa0705160:intron | 60.0% | |
| GCAACAGCCTCTTCGCTTGC+GGG | - | chr4_4:77717064-77717083 | Msa0705160:intron | 60.0% | |
| CCTTACACCCGCAAGCGAAG+AGG | + | chr4_4:77717074-77717093 | None:intergenic | 60.0% | |
| CCTCTTCGCTTGCGGGTGTA+AGG | - | chr4_4:77717071-77717090 | Msa0705160:intron | 60.0% | |
| ! | CACCCTCTGGTGCTAGGAAG+CGG | - | chr4_4:77717487-77717506 | Msa0705160:intron | 60.0% |
| ! | GGGGTCGGGGCTTTTATGGT+AGG | + | chr4_4:77717612-77717631 | None:intergenic | 60.0% |
| CCGACCCCTAATCCCACAAG+TGG | - | chr4_4:77717624-77717643 | Msa0705160:intron | 60.0% | |
| TGCTGAAGCAGAAGCCGCCA+TGG | - | chr4_4:77719380-77719399 | Msa0705160:intron | 60.0% | |
| CGCCATGGCAGAAGCTGAAG+AGG | - | chr4_4:77719395-77719414 | Msa0705160:intron | 60.0% | |
| CCAGTGCACAGGCTCCCACT+AGG | + | chr4_4:77717116-77717135 | None:intergenic | 65.0% | |
| CCTAGTGGGAGCCTGTGCAC+TGG | - | chr4_4:77717113-77717132 | Msa0705160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77714446 | 77719509 | 77714446 | ID=Msa0705160;Name=Msa0705160 |
| chr4_4 | mRNA | 77714446 | 77719509 | 77714446 | ID=Msa0705160-mRNA-1;Parent=Msa0705160;Name=Msa0705160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=114|0.33|0.28|0.85|0.83|0.71|7|0|289 |
| chr4_4 | exon | 77714446 | 77714814 | 77714446 | ID=Msa0705160-mRNA-1:exon:24750;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77715719 | 77715802 | 77715719 | ID=Msa0705160-mRNA-1:exon:24749;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77717196 | 77717280 | 77717196 | ID=Msa0705160-mRNA-1:exon:24748;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77717360 | 77717370 | 77717360 | ID=Msa0705160-mRNA-1:exon:24747;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77718175 | 77718345 | 77718175 | ID=Msa0705160-mRNA-1:exon:24746;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77718471 | 77718648 | 77718471 | ID=Msa0705160-mRNA-1:exon:24745;Parent=Msa0705160-mRNA-1 |
| chr4_4 | exon | 77719424 | 77719509 | 77719424 | ID=Msa0705160-mRNA-1:exon:24744;Parent=Msa0705160-mRNA-1 |
| chr4_4 | five_prime_UTR | 77719424 | 77719509 | 77719424 | ID=Msa0705160-mRNA-1:five_prime_utr;Parent=Msa0705160-mRNA-1 |
| chr4_4 | five_prime_UTR | 77718621 | 77718648 | 77718621 | ID=Msa0705160-mRNA-1:five_prime_utr;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77718471 | 77718620 | 77718471 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77718175 | 77718345 | 77718175 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77717360 | 77717370 | 77717360 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77717196 | 77717280 | 77717196 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77715719 | 77715802 | 77715719 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| chr4_4 | CDS | 77714446 | 77714814 | 77714446 | ID=Msa0705160-mRNA-1:cds;Parent=Msa0705160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
