AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660450 MtrunA17_Chr8g0387311 97.841 602 6 3 1 602 1 595 0.0 1204
Msa0660450 MtrunA17_Chr4g0030381 46.799 453 210 12 156 595 60 494 1.41e-120 366
Msa0660450 MtrunA17_Chr8g0373811 44.146 410 199 5 186 579 124 519 5.22e-118 361
Msa0660450 MtrunA17_Chr3g0130121 34.080 402 241 6 199 581 131 527 8.45e-80 261
Msa0660450 MtrunA17_Chr4g0034941 25.652 460 263 16 176 578 35 472 2.77e-24 106
Msa0660450 MtrunA17_Chr7g0267491 22.877 424 274 13 192 578 14 421 1.18e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660450 AT1G63850.1 68.073 545 144 6 88 602 4 548 0.0 731
Msa0660450 AT5G60050.1 42.946 482 230 10 125 595 50 497 1.42e-130 392
Msa0660450 AT3G50780.1 42.241 464 237 8 122 579 60 498 4.64e-116 355
Msa0660450 AT3G50780.2 42.241 464 237 8 122 579 60 498 4.64e-116 355
Msa0660450 AT2G13690.1 35.965 342 203 4 249 579 198 534 1.57e-71 240
Msa0660450 AT3G05675.2 25.587 426 261 14 192 578 14 422 1.04e-19 92.8
Msa0660450 AT3G05675.1 25.587 426 261 14 192 578 14 422 1.04e-19 92.8
Msa0660450 AT3G05675.3 25.587 426 261 14 192 578 14 422 1.04e-19 92.8

Find 190 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACCCTCTTTGAATATT+AGG 0.090085 4_3:+71177914 None:intergenic
TTTACACCCCTTGTCATATT+TGG 0.106495 4_3:-71176830 Msa0660450:three_prime_UTR
TTACAGGCTAATTTGCTTTA+TGG 0.132692 4_3:-71176437 Msa0660450:three_prime_UTR
CTGCTGAATTTATTAAAATT+TGG 0.164501 4_3:+71176476 None:intergenic
CTCGATCTTGTGCAATAATT+TGG 0.179077 4_3:+71179593 None:intergenic
TTTGGTGGAGAAGGGCTTTC+TGG 0.184742 4_3:-71177889 Msa0660450:CDS
CAGAAATTCGATTCATCATT+AGG 0.195290 4_3:+71179566 None:intergenic
CCAACCAAAATCATCATAAA+AGG 0.206268 4_3:+71178078 None:intergenic
AGAGGATGTTTCTAAAGTTT+TGG 0.218381 4_3:-71179251 Msa0660450:CDS
TCGATCTTGTGCAATAATTT+GGG 0.224035 4_3:+71179594 None:intergenic
AGATAATTTACATTGGATTT+TGG 0.235197 4_3:-71178308 Msa0660450:CDS
CAAACCCTCTTTGAATATTA+GGG 0.238945 4_3:+71177915 None:intergenic
GGTAATTGAGGTTCGGGTTC+GGG 0.240743 4_3:+71179934 None:intergenic
GTTGCGGTCAAACTAATTTC+TGG 0.258376 4_3:-71176697 Msa0660450:three_prime_UTR
TTCAAAGAGGGTTTGAAGTT+TGG 0.270988 4_3:-71177907 Msa0660450:CDS
ATTTGTACGTTGTTGAATAT+CGG 0.277205 4_3:+71179663 None:intergenic
CTATTCAGCTTGTATTTGTT+AGG 0.290123 4_3:-71176776 Msa0660450:three_prime_UTR
TGATGTATTGTAAGGATCTT+AGG 0.291770 4_3:-71179288 Msa0660450:CDS
GGGTAATTGAGGTTCGGGTT+CGG 0.296748 4_3:+71179933 None:intergenic
CTCTGTACAGGTCTCATTAC+AGG 0.318230 4_3:-71176453 Msa0660450:three_prime_UTR
TTTGTCTTGTTTGGAGTACT+TGG 0.324655 4_3:-71178707 Msa0660450:CDS
CGGACATTCCACTTCGGGTT+CGG 0.335543 4_3:-71179818 Msa0660450:CDS
TTTAATCGCTTCTTGAATTC+CGG 0.339244 4_3:-71177947 Msa0660450:CDS
AGAAATTCGATTCATCATTA+GGG 0.343445 4_3:+71179567 None:intergenic
TTACACCCCTTGTCATATTT+GGG 0.343583 4_3:-71176829 Msa0660450:three_prime_UTR
GTGGAATGTCCGTTTGAAAT+TGG 0.344811 4_3:+71179829 None:intergenic
ATTATCTGAAGCACATTCTA+AGG 0.352510 4_3:-71178224 Msa0660450:CDS
TTGTCCGGCGGCGGCGACAT+TGG 0.355009 4_3:+71179730 None:intergenic
GGACATTCCACTTCGGGTTC+GGG 0.355590 4_3:-71179817 Msa0660450:CDS
TGTCCGGCGGCGGCGACATT+GGG 0.361539 4_3:+71179731 None:intergenic
CTGCAATTGGATTTGATGCT+GGG 0.368070 4_3:-71178732 Msa0660450:CDS
TCTTAGGTTTCGGCTGCAAT+TGG 0.368154 4_3:-71178745 Msa0660450:intron
GAATCGGGTAATTGAGGTTC+GGG 0.373650 4_3:+71179928 None:intergenic
TTGAGGTTTGAGGAGGGAAT+TGG 0.373910 4_3:+71180047 None:intergenic
GGTGAGTGCAGAGTTGAATT+TGG 0.374911 4_3:+71179768 None:intergenic
TCACGACACTTGCGTCGTTT+AGG 0.377773 4_3:+71179985 None:intergenic
CTTATTCGTGTGGTTCTTGA+AGG 0.383037 4_3:-71178523 Msa0660450:CDS
TCAAACGGACATTCCACTTC+GGG 0.383219 4_3:-71179823 Msa0660450:CDS
AAAACCTCTTAGATAGATAA+TGG 0.388467 4_3:-71180103 Msa0660450:exon
CTTACGCTTAGTTCTAAAGA+TGG 0.389796 4_3:-71179481 Msa0660450:CDS
ACTAGTTCATTAACATTAAA+CGG 0.390704 4_3:+71176583 None:intergenic
TTTGAGGTTGATGTATTGTA+AGG 0.401471 4_3:-71179296 Msa0660450:CDS
CTAATTGAATACTAGTTTGA+AGG 0.403499 4_3:-71176537 Msa0660450:three_prime_UTR
GAAGAAGTTGCATTGTTGAT+TGG 0.404137 4_3:+71179628 None:intergenic
TACAACTATAGCGTGGTATA+CGG 0.406813 4_3:+71176877 None:intergenic
GCTAGGTTGTTTGTTGGGAT+TGG 0.410646 4_3:-71178163 Msa0660450:CDS
TTCGGGTTGTGTTGCGGAAG+TGG 0.411944 4_3:+71179951 None:intergenic
TTGAATTTGGTGAAGCTTGA+AGG 0.416618 4_3:+71179781 None:intergenic
GCTGCAATTGGATTTGATGC+TGG 0.422016 4_3:-71178733 Msa0660450:CDS
GGTTTGAAGTTTGGTGGAGA+AGG 0.426450 4_3:-71177898 Msa0660450:CDS
TTTGTACGTTGTTGAATATC+GGG 0.426581 4_3:+71179664 None:intergenic
AGGTTTATGTGGAGACTTTG+AGG 0.431350 4_3:-71179312 Msa0660450:CDS
AAGAAGTTGCATTGTTGATT+GGG 0.431702 4_3:+71179629 None:intergenic
GATTGGAAAGGGACAGTTGT+TGG 0.434584 4_3:-71178146 Msa0660450:CDS
CTGTGATGACTTCTATCTAC+AGG 0.435764 4_3:+71176660 None:intergenic
CGAAGAGCGTTGGACTTGAT+CGG 0.439570 4_3:+71179704 None:intergenic
AAAGAGGGTTTGAAGTTTGG+TGG 0.440178 4_3:-71177904 Msa0660450:CDS
GCGTCGTTTAGGTTTGGTGA+TGG 0.445877 4_3:+71179996 None:intergenic
GTGGAATATACTAATTTAGT+AGG 0.448228 4_3:+71176752 None:intergenic
AATATTAGGGCAATCTTCAC+CGG 0.449000 4_3:+71177928 None:intergenic
TTGTTTGTTGGGATTGGAAA+GGG 0.449026 4_3:-71178157 Msa0660450:CDS
GAAGAGCGTTGGACTTGATC+GGG 0.449446 4_3:+71179705 None:intergenic
TTACCGCTAGGTTGTTTGTT+GGG 0.451093 4_3:-71178168 Msa0660450:CDS
GAGCATCCAAGGGCCTTGAT+AGG 0.451859 4_3:-71178048 Msa0660450:CDS
GTTGCCATTATCTATCTAAG+AGG 0.453656 4_3:+71180099 None:intergenic
GTTCATTAACATTAAACGGT+TGG 0.456408 4_3:+71176587 None:intergenic
TATTCAGCTTGTATTTGTTA+GGG 0.459124 4_3:-71176775 Msa0660450:three_prime_UTR
ACACTTGCGTCGTTTAGGTT+TGG 0.462451 4_3:+71179990 None:intergenic
AGGAGGCAAAGGTTAATAAA+TGG 0.464371 4_3:+71180205 None:intergenic
TGAATCGGGTAATTGAGGTT+CGG 0.466042 4_3:+71179927 None:intergenic
CTTACCACTCTCCTGGCAAC+AGG 0.466584 4_3:-71177987 Msa0660450:CDS
GACGCAGAGTCAACAGCGTT+CGG 0.469378 4_3:-71179377 Msa0660450:CDS
AACCTCAACATCATCACAAT+CGG 0.470361 4_3:+71179330 None:intergenic
TCCAACGCTCTTCGAAATGA+TGG 0.471774 4_3:-71179695 Msa0660450:CDS
TAACGAACGGTGTAAGTAGA+AGG 0.472517 4_3:+71179904 None:intergenic
TGGTGAAGCTTGAAGGAAAA+GGG 0.473098 4_3:+71179788 None:intergenic
ATTCTTCTCAGAATGATCTT+CGG 0.473417 4_3:-71178441 Msa0660450:CDS
GTTACCGCTAGGTTGTTTGT+TGG 0.477193 4_3:-71178169 Msa0660450:CDS
TCTTCTTCACCAATTTCAAA+CGG 0.478223 4_3:-71179838 Msa0660450:CDS
CACACACTCTCTCTATTCCT+TGG 0.479202 4_3:-71180153 Msa0660450:five_prime_UTR
AAGCAAAATTTCCTGTTGCC+AGG 0.480844 4_3:+71177976 None:intergenic
CCTTTGCCTCCTTCACTCAC+AGG 0.482247 4_3:-71180194 Msa0660450:five_prime_UTR
AAGCGTAAGCTTAATATCAC+TGG 0.485433 4_3:+71179495 None:intergenic
GTTTGAAGTTTGGTGGAGAA+GGG 0.485596 4_3:-71177897 Msa0660450:CDS
CGTCGTTTAGGTTTGGTGAT+GGG 0.487514 4_3:+71179997 None:intergenic
ACAGTTGTTGGCTTCTAAAG+AGG 0.487790 4_3:-71178134 Msa0660450:CDS
GGTGTAAGTAGAAGGTGAAT+CGG 0.487879 4_3:+71179912 None:intergenic
CTAAGGTGCCTGCAGTTCAC+AGG 0.488194 4_3:-71178207 Msa0660450:CDS
ACCTCAAACCTGTGAACTGC+AGG 0.488487 4_3:+71178199 None:intergenic
TAAATTCAGCAGCTCTGTAC+AGG 0.489466 4_3:-71176465 Msa0660450:three_prime_UTR
TAATTCGTAATTGTCTTGTC+CGG 0.492734 4_3:+71177846 None:intergenic
ATTCCCCTCTTCATATCCAT+TGG 0.492767 4_3:+71178570 None:intergenic
GAACTTCGTCTTGAATCTGT+TGG 0.492847 4_3:-71178631 Msa0660450:CDS
CAACCCAATGTCGCCGCCGC+CGG 0.496960 4_3:-71179734 Msa0660450:CDS
TGATGATGTTGAGGTTTATG+TGG 0.498709 4_3:-71179323 Msa0660450:CDS
AGAGGAACGGAGAGCAAGAC+CGG 0.499813 4_3:-71177865 Msa0660450:CDS
TTGGTGAAGCTTGAAGGAAA+AGG 0.499866 4_3:+71179787 None:intergenic
TCTTCTTCATCCTCCGCCCA+CGG 0.501079 4_3:+71178676 None:intergenic
CAATTTGACTTACATCCTGC+AGG 0.501110 4_3:+71178341 None:intergenic
CAACCAAAATCATCATAAAA+GGG 0.501348 4_3:+71178079 None:intergenic
TGAATCTGTTGGAGCTGTGG+AGG 0.503064 4_3:-71178620 Msa0660450:CDS
GGAGAAGGGCTTTCTGGAAG+AGG 0.504200 4_3:-71177883 Msa0660450:CDS
TCTTGAAGGTAAAGATGAAA+AGG 0.505170 4_3:-71178509 Msa0660450:CDS
GGAAGCGGCACCGTGGGCGG+AGG 0.505445 4_3:-71178686 Msa0660450:CDS
CCGTGAAGCTTTCTGATCGG+TGG 0.511552 4_3:-71179399 Msa0660450:CDS
GGCTGCGGATTCAGACCTGC+AGG 0.512151 4_3:-71178356 Msa0660450:CDS
CTATTATCTTCACGTAGTCC+TGG 0.515173 4_3:-71179541 Msa0660450:CDS
CCTCAATTATATGCCTATCA+AGG 0.515740 4_3:+71178035 None:intergenic
CCACCGATCAGAAAGCTTCA+CGG 0.518624 4_3:+71179399 None:intergenic
CAACCCTTTCATCTCTCGCC+TGG 0.520699 4_3:+71178486 None:intergenic
ACCATCATTTCGAAGAGCGT+TGG 0.521062 4_3:+71179694 None:intergenic
TTGTTTGGAGTACTTGGAAG+CGG 0.521954 4_3:-71178701 Msa0660450:CDS
CGATCTTGTGCAATAATTTG+GGG 0.527512 4_3:+71179595 None:intergenic
TTCTCACCTTACCACTCTCC+TGG 0.528095 4_3:-71177994 Msa0660450:CDS
TTTCCGTGAAGCTTTCTGAT+CGG 0.529247 4_3:-71179402 Msa0660450:CDS
TTCAACTCTGCACTCACCGC+CGG 0.531671 4_3:-71179763 Msa0660450:CDS
GCCTGCAGTTCACAGGTTTG+AGG 0.532007 4_3:-71178200 Msa0660450:CDS
TTCGGGTTCGGGTTGTGTTG+CGG 0.534075 4_3:+71179945 None:intergenic
ATATCCATTGGCAACTTCAG+TGG 0.534213 4_3:+71178582 None:intergenic
TATATGCCTATCAAGGCCCT+TGG 0.534380 4_3:+71178042 None:intergenic
TCTTGAATCTGTTGGAGCTG+TGG 0.536388 4_3:-71178623 Msa0660450:CDS
TTCTCAGAATGATCTTCGGA+AGG 0.542018 4_3:-71178437 Msa0660450:CDS
TGTTGCGGAAGTGGATATTG+TGG 0.542327 4_3:+71179960 None:intergenic
GAAGGTGAATCGGGTAATTG+AGG 0.543986 4_3:+71179922 None:intergenic
CATTCTGAGAAGAATTCTCA+TGG 0.544991 4_3:+71178449 None:intergenic
TTCAAACGGACATTCCACTT+CGG 0.546718 4_3:-71179824 Msa0660450:CDS
TTGGATGAGGAGAGCATCCA+AGG 0.549081 4_3:-71178059 Msa0660450:CDS
TAGGAAGAAGCTTATGAAAG+AGG 0.549581 4_3:-71179269 Msa0660450:CDS
TTAGGGAATTCTAAAGTCGA+AGG 0.551923 4_3:+71176505 None:intergenic
CTGAGGATTTCCTGAAAACG+TGG 0.554730 4_3:-71178261 Msa0660450:CDS
GACAAGCAGATAATTTACAT+TGG 0.554762 4_3:-71178315 Msa0660450:CDS
GTTGTTTGTTGGGATTGGAA+AGG 0.555381 4_3:-71178158 Msa0660450:CDS
CCAGGAAAATATCTTTGTTG+CGG 0.555704 4_3:-71176713 Msa0660450:three_prime_UTR
CGACATTGGGTTGAGAAGAC+CGG 0.556837 4_3:+71179744 None:intergenic
TGTTGGCTTCTAAAGAGGCT+AGG 0.556855 4_3:-71178129 Msa0660450:CDS
TCGGCAATTTCAACAAGATA+CGG 0.559349 4_3:+71179349 None:intergenic
GTGTAAGTAGAAGGTGAATC+GGG 0.559723 4_3:+71179913 None:intergenic
CCTTGATAGGCATATAATTG+AGG 0.562443 4_3:-71178035 Msa0660450:CDS
GTACTTGGAAGCGGCACCGT+GGG 0.570304 4_3:-71178692 Msa0660450:CDS
ATTCAAGACGAAGTTCAGAC+AGG 0.573714 4_3:+71178638 None:intergenic
GTTTCCACTGAAGTTGCCAA+TGG 0.576467 4_3:-71178586 Msa0660450:CDS
TGCCGATTGTGATGATGTTG+AGG 0.578787 4_3:-71179332 Msa0660450:CDS
ATGATTGGTGAAAATCTACC+AGG 0.579478 4_3:+71179877 None:intergenic
CTTACTTAAACTTATTCGTG+TGG 0.579768 4_3:-71178533 Msa0660450:CDS
GATTGCCCTAATATTCAAAG+AGG 0.580781 4_3:-71177920 Msa0660450:CDS
CTGTTGCCAGGAGAGTGGTA+AGG 0.583623 4_3:+71177988 None:intergenic
AGGTTAGCAGAGTTACCGCT+AGG 0.584095 4_3:-71178180 Msa0660450:CDS
CTTGGAAGCGGCACCGTGGG+CGG 0.586200 4_3:-71178689 Msa0660450:CDS
AAGGCCAGGCGAGAGATGAA+AGG 0.586887 4_3:-71178490 Msa0660450:CDS
AAGGTAAAGATGAAAAGGCC+AGG 0.587709 4_3:-71178504 Msa0660450:CDS
AGGCCAGGCGAGAGATGAAA+GGG 0.588190 4_3:-71178489 Msa0660450:CDS
GTCATGACCCGAACCCGAAG+TGG 0.591055 4_3:+71179810 None:intergenic
GTTGCCAATGGATATGAAGA+GGG 0.593301 4_3:-71178574 Msa0660450:CDS
TACACCGTTCGTTACTCACC+TGG 0.594073 4_3:-71179895 Msa0660450:CDS
GATAGGCATATAATTGAGGA+TGG 0.598325 4_3:-71178031 Msa0660450:CDS
CAAAATCCCAAATATGACAA+GGG 0.598421 4_3:+71176823 None:intergenic
CCTGTGAGTGAAGGAGGCAA+AGG 0.599435 4_3:+71180194 None:intergenic
ATTTCCTGTTGCCAGGAGAG+TGG 0.604791 4_3:+71177983 None:intergenic
GAGTGTGTGAAATCCATGAT+TGG 0.608504 4_3:+71179862 None:intergenic
GAATCATTGAAATGATTACC+AGG 0.608972 4_3:+71179523 None:intergenic
ATTGCCCTAATATTCAAAGA+GGG 0.609062 4_3:-71177919 Msa0660450:CDS
ACAAGGGGTGTAAATATCAG+TGG 0.622170 4_3:+71176839 None:intergenic
AGGGCTTTCTGGAAGAGGAA+CGG 0.622207 4_3:-71177878 Msa0660450:CDS
TGCAATTGGATTTGATGCTG+GGG 0.622313 4_3:-71178731 Msa0660450:CDS
CTGTAGATAGAAGTCATCAC+AGG 0.622768 4_3:-71176659 Msa0660450:three_prime_UTR
AAAATCCCAAATATGACAAG+GGG 0.629526 4_3:+71176824 None:intergenic
CAGGCGAGAGATGAAAGGGT+TGG 0.630999 4_3:-71178485 Msa0660450:CDS
TGTGAACCTGTGAGTGAAGG+AGG 0.632301 4_3:+71180188 None:intergenic
AGTTGCCAATGGATATGAAG+AGG 0.632608 4_3:-71178575 Msa0660450:CDS
TCGGAAGGAGTCGTTATACT+CGG 0.634936 4_3:-71178422 Msa0660450:CDS
TGAAGAGGGGAATGATAACG+AGG 0.636725 4_3:-71178560 Msa0660450:CDS
TGGAAGAAAACACACTGCAG+TGG 0.636790 4_3:+71176733 None:intergenic
TCAAAATCCCAAATATGACA+AGG 0.640656 4_3:+71176822 None:intergenic
TCAAGTGTGCTCAACTGATG+CGG 0.641927 4_3:+71177820 None:intergenic
GTGTGTGAACCTGTGAGTGA+AGG 0.642358 4_3:+71180185 None:intergenic
GATTGATAGACAGATTGCTG+AGG 0.647321 4_3:-71178278 Msa0660450:CDS
TGTGATGACTTCTATCTACA+GGG 0.653438 4_3:+71176661 None:intergenic
GGTGTTTACTTCTCAAAACG+TGG 0.654701 4_3:-71178108 Msa0660450:CDS
GAAACGGCAGACTATATACA+TGG 0.655112 4_3:-71177773 Msa0660450:intron
TGGATGAGGAGAGCATCCAA+GGG 0.664506 4_3:-71178058 Msa0660450:CDS
AGTACTTGGAAGCGGCACCG+TGG 0.664859 4_3:-71178693 Msa0660450:CDS
TTGCCAATGGATATGAAGAG+GGG 0.674831 4_3:-71178573 Msa0660450:CDS
AGGCAAAGGTTAATAAATGG+CGG 0.682013 4_3:+71180208 None:intergenic
GGAGGATGAAGAAGACAAAG+TGG 0.683460 4_3:-71178668 Msa0660450:CDS
TGAGGATTTCCTGAAAACGT+GGG 0.685728 4_3:-71178260 Msa0660450:CDS
TCTACCAGGTGAGTAACGAA+CGG 0.692816 4_3:+71179891 None:intergenic
GTCTGCCGTTTCCTCCACCG+TGG 0.701509 4_3:+71177784 None:intergenic
CATTGGGTTGAGAAGACCGG+CGG 0.715075 4_3:+71179747 None:intergenic
CAACTCATACAACTATAGCG+TGG 0.730265 4_3:+71176870 None:intergenic
AATCCCAACAAACAACCTAG+CGG 0.767443 4_3:+71178165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTAATTTGTTGTTTA+TGG - chr4_3:71177463-71177482 Msa0660450:intron 15.0%
!!! TGTTTTTTTTTTTGTTGTTG+TGG - chr4_3:71177438-71177457 Msa0660450:intron 20.0%
!!! GTTTTTTTTTTTGTTGTTGT+GGG - chr4_3:71177439-71177458 Msa0660450:intron 20.0%
!!! TTTTTTTTTTTGTTGTTGTG+GGG - chr4_3:71177440-71177459 Msa0660450:intron 20.0%
!! TTGTAGACAATTATAGTTAT+AGG - chr4_3:71177643-71177662 Msa0660450:intron 20.0%
!! TCTATTTATCAAATTACTAC+AGG - chr4_3:71177800-71177819 Msa0660450:three_prime_UTR 20.0%
!!! TCTGTTTTTTGTTTTATCTT+AGG - chr4_3:71177874-71177893 Msa0660450:CDS 20.0%
!!! TTTTGTTTTATCTTAGGTTT+CGG - chr4_3:71177880-71177899 Msa0660450:CDS 20.0%
!!! AGATAATTTACATTGGATTT+TGG - chr4_3:71178327-71178346 Msa0660450:CDS 20.0%
!! TTAAATACTGATAATCATAG+AGG + chr4_3:71178930-71178949 None:intergenic 20.0%
!!! TTTTTTTCTTTTCATCCTTT+TGG - chr4_3:71179651-71179670 Msa0660450:CDS 20.0%
!! AAAACAAAAGAATAGTCAAT+GGG + chr4_3:71179714-71179733 None:intergenic 20.0%
!! AAAAACAAAAGAATAGTCAA+TGG + chr4_3:71179715-71179734 None:intergenic 20.0%
!! ACTAGTTCATTAACATTAAA+CGG + chr4_3:71180055-71180074 None:intergenic 20.0%
!!! TTAAAATTTGGCACATTTTA+GGG + chr4_3:71180150-71180169 None:intergenic 20.0%
!!! ATTAAAATTTGGCACATTTT+AGG + chr4_3:71180151-71180170 None:intergenic 20.0%
!! CTGCTGAATTTATTAAAATT+TGG + chr4_3:71180162-71180181 None:intergenic 20.0%
! AAAACCTCTTAGATAGATAA+TGG - chr4_3:71176532-71176551 Msa0660450:three_prime_UTR 25.0%
! ATTTGTACGTTGTTGAATAT+CGG + chr4_3:71176975-71176994 None:intergenic 25.0%
! AGAAATTCGATTCATCATTA+GGG + chr4_3:71177071-71177090 None:intergenic 25.0%
!!! TAAAGTTTTGGGTATTTTGA+AGG - chr4_3:71177396-71177415 Msa0660450:intron 25.0%
!!! TTTTGCTCTGTTTTATTAAC+TGG - chr4_3:71177555-71177574 Msa0660450:intron 25.0%
! TGGATTATAATGCAAATTGT+AGG - chr4_3:71177575-71177594 Msa0660450:intron 25.0%
! ATAATGCAAATTGTAGGATT+AGG - chr4_3:71177581-71177600 Msa0660450:intron 25.0%
! CAACCAAAATCATCATAAAA+GGG + chr4_3:71178559-71178578 None:intergenic 25.0%
!! TTGAAGATGATATTTTTCCA+CGG - chr4_3:71178834-71178853 Msa0660450:intron 25.0%
!!! CTTGTTATTTCCAACAAAAT+AGG + chr4_3:71179070-71179089 None:intergenic 25.0%
!! TATTCAGCTTGTATTTGTTA+GGG - chr4_3:71179860-71179879 Msa0660450:CDS 25.0%
! GTGGAATATACTAATTTAGT+AGG + chr4_3:71179886-71179905 None:intergenic 25.0%
!! CTAATTGAATACTAGTTTGA+AGG - chr4_3:71180098-71180117 Msa0660450:exon 25.0%
TCTTCTTCACCAATTTCAAA+CGG - chr4_3:71176797-71176816 Msa0660450:three_prime_UTR 30.0%
TTTGTACGTTGTTGAATATC+GGG + chr4_3:71176974-71176993 None:intergenic 30.0%
! AAGAAGTTGCATTGTTGATT+GGG + chr4_3:71177009-71177028 None:intergenic 30.0%
TCGATCTTGTGCAATAATTT+GGG + chr4_3:71177044-71177063 None:intergenic 30.0%
CAGAAATTCGATTCATCATT+AGG + chr4_3:71177072-71177091 None:intergenic 30.0%
GAATCATTGAAATGATTACC+AGG + chr4_3:71177115-71177134 None:intergenic 30.0%
!! TTTGAGGTTGATGTATTGTA+AGG - chr4_3:71177339-71177358 Msa0660450:intron 30.0%
TGATGTATTGTAAGGATCTT+AGG - chr4_3:71177347-71177366 Msa0660450:intron 30.0%
!!! AGAGGATGTTTCTAAAGTTT+TGG - chr4_3:71177384-71177403 Msa0660450:intron 30.0%
!!! GAGGATGTTTCTAAAGTTTT+GGG - chr4_3:71177385-71177404 Msa0660450:intron 30.0%
!! TTGATAATGTAGCATACTGT+AGG - chr4_3:71177512-71177531 Msa0660450:intron 30.0%
CTTACTTAAACTTATTCGTG+TGG - chr4_3:71178102-71178121 Msa0660450:CDS 30.0%
TCTTGAAGGTAAAGATGAAA+AGG - chr4_3:71178126-71178145 Msa0660450:CDS 30.0%
ATTCTTCTCAGAATGATCTT+CGG - chr4_3:71178194-71178213 Msa0660450:CDS 30.0%
GACAAGCAGATAATTTACAT+TGG - chr4_3:71178320-71178339 Msa0660450:CDS 30.0%
! ATTATCTGAAGCACATTCTA+AGG - chr4_3:71178411-71178430 Msa0660450:CDS 30.0%
! GTTCCCTTTTATGATGATTT+TGG - chr4_3:71178553-71178572 Msa0660450:CDS 30.0%
CCAACCAAAATCATCATAAA+AGG + chr4_3:71178560-71178579 None:intergenic 30.0%
!! CCTTTTATGATGATTTTGGT+TGG - chr4_3:71178557-71178576 Msa0660450:CDS 30.0%
TTTAATCGCTTCTTGAATTC+CGG - chr4_3:71178688-71178707 Msa0660450:CDS 30.0%
ATTGCCCTAATATTCAAAGA+GGG - chr4_3:71178716-71178735 Msa0660450:CDS 30.0%
CAAACCCTCTTTGAATATTA+GGG + chr4_3:71178723-71178742 None:intergenic 30.0%
TCAAACCCTCTTTGAATATT+AGG + chr4_3:71178724-71178743 None:intergenic 30.0%
TAATTCGTAATTGTCTTGTC+CGG + chr4_3:71178792-71178811 None:intergenic 30.0%
! CTAAAACTAGTTTCACACAA+AGG + chr4_3:71178993-71179012 None:intergenic 30.0%
! GTTATTTCCAACAAAATAGG+AGG + chr4_3:71179067-71179086 None:intergenic 30.0%
AATCACACAACAGATATGAA+GGG + chr4_3:71179119-71179138 None:intergenic 30.0%
AAATCACACAACAGATATGA+AGG + chr4_3:71179120-71179139 None:intergenic 30.0%
!!! GACAAGGGATTTATTTTGTT+GGG + chr4_3:71179235-71179254 None:intergenic 30.0%
!!! AGACAAGGGATTTATTTTGT+TGG + chr4_3:71179236-71179255 None:intergenic 30.0%
TAACATTCTAGTATCTCTCT+GGG + chr4_3:71179329-71179348 None:intergenic 30.0%
ATAACATTCTAGTATCTCTC+TGG + chr4_3:71179330-71179349 None:intergenic 30.0%
ACTTTCTTGTTACATTCTGT+TGG - chr4_3:71179378-71179397 Msa0660450:CDS 30.0%
!!! AACCACCAATTATTTTTGCT+CGG - chr4_3:71179560-71179579 Msa0660450:CDS 30.0%
AAAATCCCAAATATGACAAG+GGG + chr4_3:71179814-71179833 None:intergenic 30.0%
CAAAATCCCAAATATGACAA+GGG + chr4_3:71179815-71179834 None:intergenic 30.0%
TCAAAATCCCAAATATGACA+AGG + chr4_3:71179816-71179835 None:intergenic 30.0%
!! GTCATATTTGGGATTTTGAT+TGG - chr4_3:71179817-71179836 Msa0660450:CDS 30.0%
CTATTCAGCTTGTATTTGTT+AGG - chr4_3:71179859-71179878 Msa0660450:CDS 30.0%
GTTCATTAACATTAAACGGT+TGG + chr4_3:71180051-71180070 None:intergenic 30.0%
!! TTACAGGCTAATTTGCTTTA+TGG - chr4_3:71180198-71180217 Msa0660450:five_prime_UTR 30.0%
AGGCAAAGGTTAATAAATGG+CGG + chr4_3:71176430-71176449 None:intergenic 35.0%
AGGAGGCAAAGGTTAATAAA+TGG + chr4_3:71176433-71176452 None:intergenic 35.0%
GTTGCCATTATCTATCTAAG+AGG + chr4_3:71176539-71176558 None:intergenic 35.0%
!!! TGTTGTTGTTGTTGGTTTTG+AGG + chr4_3:71176608-71176627 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG + chr4_3:71176616-71176635 None:intergenic 35.0%
ATGATTGGTGAAAATCTACC+AGG + chr4_3:71176761-71176780 None:intergenic 35.0%
! TGGTAGATTTTCACCAATCA+TGG - chr4_3:71176760-71176779 Msa0660450:three_prime_UTR 35.0%
! TTGAATTTGGTGAAGCTTGA+AGG + chr4_3:71176857-71176876 None:intergenic 35.0%
GAAGAAGTTGCATTGTTGAT+TGG + chr4_3:71177010-71177029 None:intergenic 35.0%
CGATCTTGTGCAATAATTTG+GGG + chr4_3:71177043-71177062 None:intergenic 35.0%
CTCGATCTTGTGCAATAATT+TGG + chr4_3:71177045-71177064 None:intergenic 35.0%
AAGCGTAAGCTTAATATCAC+TGG + chr4_3:71177143-71177162 None:intergenic 35.0%
!! CTTACGCTTAGTTCTAAAGA+TGG - chr4_3:71177154-71177173 Msa0660450:intron 35.0%
TCGGCAATTTCAACAAGATA+CGG + chr4_3:71177289-71177308 None:intergenic 35.0%
AACCTCAACATCATCACAAT+CGG + chr4_3:71177308-71177327 None:intergenic 35.0%
! TGATGATGTTGAGGTTTATG+TGG - chr4_3:71177312-71177331 Msa0660450:intron 35.0%
TAGGAAGAAGCTTATGAAAG+AGG - chr4_3:71177366-71177385 Msa0660450:intron 35.0%
! ACTCTTTTAATCCGAAGTGT+GGG + chr4_3:71177738-71177757 None:intergenic 35.0%
!! TTCGGATTAAAAGAGTGTCT+GGG - chr4_3:71177742-71177761 Msa0660450:intron 35.0%
ACAAATCCATGAATCAGACA+AGG + chr4_3:71177855-71177874 None:intergenic 35.0%
!! TTTGTCTTGTTTGGAGTACT+TGG - chr4_3:71177928-71177947 Msa0660450:CDS 35.0%
! CATTCTGAGAAGAATTCTCA+TGG + chr4_3:71178189-71178208 None:intergenic 35.0%
! TTGTTTGTTGGGATTGGAAA+GGG - chr4_3:71178478-71178497 Msa0660450:CDS 35.0%
!!! ATGATGATTTTGGTTGGATG+AGG - chr4_3:71178563-71178582 Msa0660450:CDS 35.0%
CCTCAATTATATGCCTATCA+AGG + chr4_3:71178603-71178622 None:intergenic 35.0%
CCTTGATAGGCATATAATTG+AGG - chr4_3:71178600-71178619 Msa0660450:CDS 35.0%
GATAGGCATATAATTGAGGA+TGG - chr4_3:71178604-71178623 Msa0660450:CDS 35.0%
! AACAGGAAATTTTGCTTGCT+TGG - chr4_3:71178665-71178684 Msa0660450:CDS 35.0%
AATATTAGGGCAATCTTCAC+CGG + chr4_3:71178710-71178729 None:intergenic 35.0%
GATTGCCCTAATATTCAAAG+AGG - chr4_3:71178715-71178734 Msa0660450:CDS 35.0%
! TTCAAAGAGGGTTTGAAGTT+TGG - chr4_3:71178728-71178747 Msa0660450:CDS 35.0%
! AAGATGATATTTTTCCACGG+TGG - chr4_3:71178837-71178856 Msa0660450:intron 35.0%
ACGATCATGAGAAGGTTAAA+AGG + chr4_3:71178895-71178914 None:intergenic 35.0%
ATATAGAGACGATCATGAGA+AGG + chr4_3:71178903-71178922 None:intergenic 35.0%
AAATAGTGTCATCTTCTTCC+AGG + chr4_3:71179037-71179056 None:intergenic 35.0%
! ATTGTCACCTCCTATTTTGT+TGG - chr4_3:71179057-71179076 Msa0660450:intron 35.0%
GGATTGTACTCTTGATAAGA+AGG - chr4_3:71179184-71179203 Msa0660450:intron 35.0%
GTACTCTTGATAAGAAGGAA+CGG - chr4_3:71179189-71179208 Msa0660450:intron 35.0%
TACTCTTGATAAGAAGGAAC+GGG - chr4_3:71179190-71179209 Msa0660450:intron 35.0%
ATAAGAAGGAACGGGTAAAA+GGG - chr4_3:71179198-71179217 Msa0660450:intron 35.0%
CAGTCTCATTGATAAGACAA+GGG + chr4_3:71179250-71179269 None:intergenic 35.0%
TATCTTGCTACAACATGCAT+GGG + chr4_3:71179283-71179302 None:intergenic 35.0%
TTATCTTGCTACAACATGCA+TGG + chr4_3:71179284-71179303 None:intergenic 35.0%
! TGTTACATTCTGTTGGTAAG+TGG - chr4_3:71179385-71179404 Msa0660450:CDS 35.0%
TAAACATCCTGGCATACTAA+AGG + chr4_3:71179429-71179448 None:intergenic 35.0%
!!! ACCACCAATTATTTTTGCTC+GGG - chr4_3:71179561-71179580 Msa0660450:CDS 35.0%
AATGGGATGACAATATTGGT+CGG + chr4_3:71179697-71179716 None:intergenic 35.0%
AGTCAATGGGATGACAATAT+TGG + chr4_3:71179701-71179720 None:intergenic 35.0%
! TTTTTGTGTCTCTCTTATGC+AGG - chr4_3:71179731-71179750 Msa0660450:CDS 35.0%
TACAACTATAGCGTGGTATA+CGG + chr4_3:71179761-71179780 None:intergenic 35.0%
TTTACACCCCTTGTCATATT+TGG - chr4_3:71179805-71179824 Msa0660450:CDS 35.0%
TTACACCCCTTGTCATATTT+GGG - chr4_3:71179806-71179825 Msa0660450:CDS 35.0%
CCAGGAAAATATCTTTGTTG+CGG - chr4_3:71179922-71179941 Msa0660450:CDS 35.0%
TGTGATGACTTCTATCTACA+GGG + chr4_3:71179977-71179996 None:intergenic 35.0%
!! TTAGGGAATTCTAAAGTCGA+AGG + chr4_3:71180133-71180152 None:intergenic 35.0%
!!! AAGCAGTTGTTGTCGTTTTG+TGG + chr4_3:71176512-71176531 None:intergenic 40.0%
!!! TTGGTTTTGAGGTTTGAGGA+GGG + chr4_3:71176597-71176616 None:intergenic 40.0%
!!! GTTGTTGGTTTTGAGGTTTG+AGG + chr4_3:71176601-71176620 None:intergenic 40.0%
TGAATCGGGTAATTGAGGTT+CGG + chr4_3:71176711-71176730 None:intergenic 40.0%
GTGTAAGTAGAAGGTGAATC+GGG + chr4_3:71176725-71176744 None:intergenic 40.0%
GGTGTAAGTAGAAGGTGAAT+CGG + chr4_3:71176726-71176745 None:intergenic 40.0%
TAACGAACGGTGTAAGTAGA+AGG + chr4_3:71176734-71176753 None:intergenic 40.0%
GAGTGTGTGAAATCCATGAT+TGG + chr4_3:71176776-71176795 None:intergenic 40.0%
! GTGGAATGTCCGTTTGAAAT+TGG + chr4_3:71176809-71176828 None:intergenic 40.0%
TTCAAACGGACATTCCACTT+CGG - chr4_3:71176811-71176830 Msa0660450:three_prime_UTR 40.0%
TGGTGAAGCTTGAAGGAAAA+GGG + chr4_3:71176850-71176869 None:intergenic 40.0%
TTGGTGAAGCTTGAAGGAAA+AGG + chr4_3:71176851-71176870 None:intergenic 40.0%
CTATTATCTTCACGTAGTCC+TGG - chr4_3:71177094-71177113 Msa0660450:intron 40.0%
TTTCCGTGAAGCTTTCTGAT+CGG - chr4_3:71177233-71177252 Msa0660450:intron 40.0%
AGGTTTATGTGGAGACTTTG+AGG - chr4_3:71177323-71177342 Msa0660450:intron 40.0%
! CACTCTTTTAATCCGAAGTG+TGG + chr4_3:71177739-71177758 None:intergenic 40.0%
!! CTTCGGATTAAAAGAGTGTC+TGG - chr4_3:71177741-71177760 Msa0660450:intron 40.0%
! AAATTACTACAGGTGTTGCG+TGG - chr4_3:71177810-71177829 Msa0660450:exon 40.0%
CTGCAATTGGATTTGATGCT+GGG - chr4_3:71177903-71177922 Msa0660450:CDS 40.0%
TGCAATTGGATTTGATGCTG+GGG - chr4_3:71177904-71177923 Msa0660450:CDS 40.0%
! TTGTTTGGAGTACTTGGAAG+CGG - chr4_3:71177934-71177953 Msa0660450:CDS 40.0%
ATTCAAGACGAAGTTCAGAC+AGG + chr4_3:71178000-71178019 None:intergenic 40.0%
GAACTTCGTCTTGAATCTGT+TGG - chr4_3:71178004-71178023 Msa0660450:CDS 40.0%
ATATCCATTGGCAACTTCAG+TGG + chr4_3:71178056-71178075 None:intergenic 40.0%
AGTTGCCAATGGATATGAAG+AGG - chr4_3:71178060-71178079 Msa0660450:CDS 40.0%
GTTGCCAATGGATATGAAGA+GGG - chr4_3:71178061-71178080 Msa0660450:CDS 40.0%
TTGCCAATGGATATGAAGAG+GGG - chr4_3:71178062-71178081 Msa0660450:CDS 40.0%
ATTCCCCTCTTCATATCCAT+TGG + chr4_3:71178068-71178087 None:intergenic 40.0%
CTTATTCGTGTGGTTCTTGA+AGG - chr4_3:71178112-71178131 Msa0660450:CDS 40.0%
AAGGTAAAGATGAAAAGGCC+AGG - chr4_3:71178131-71178150 Msa0660450:CDS 40.0%
TTCTCAGAATGATCTTCGGA+AGG - chr4_3:71178198-71178217 Msa0660450:CDS 40.0%
!!! TACTTCGTCACCACTTTTTG+CGG - chr4_3:71178257-71178276 Msa0660450:CDS 40.0%
! CAATTTGACTTACATCCTGC+AGG + chr4_3:71178297-71178316 None:intergenic 40.0%
GATTGATAGACAGATTGCTG+AGG - chr4_3:71178357-71178376 Msa0660450:CDS 40.0%
TGAGGATTTCCTGAAAACGT+GGG - chr4_3:71178375-71178394 Msa0660450:CDS 40.0%
TTACCGCTAGGTTGTTTGTT+GGG - chr4_3:71178467-71178486 Msa0660450:CDS 40.0%
AATCCCAACAAACAACCTAG+CGG + chr4_3:71178473-71178492 None:intergenic 40.0%
! GTTGTTTGTTGGGATTGGAA+AGG - chr4_3:71178477-71178496 Msa0660450:CDS 40.0%
!! ACAGTTGTTGGCTTCTAAAG+AGG - chr4_3:71178501-71178520 Msa0660450:CDS 40.0%
GGTGTTTACTTCTCAAAACG+TGG - chr4_3:71178527-71178546 Msa0660450:CDS 40.0%
AAGCAAAATTTCCTGTTGCC+AGG + chr4_3:71178662-71178681 None:intergenic 40.0%
! AAAGAGGGTTTGAAGTTTGG+TGG - chr4_3:71178731-71178750 Msa0660450:CDS 40.0%
! GTTTGAAGTTTGGTGGAGAA+GGG - chr4_3:71178738-71178757 Msa0660450:CDS 40.0%
! ATGATATTTTTCCACGGTGG+AGG - chr4_3:71178840-71178859 Msa0660450:intron 40.0%
GAAACGGCAGACTATATACA+TGG - chr4_3:71178862-71178881 Msa0660450:intron 40.0%
TTAAGCCTTCTGTCAAACTC+TGG - chr4_3:71178946-71178965 Msa0660450:intron 40.0%
TTCTACCAGAGTTTGACAGA+AGG + chr4_3:71178954-71178973 None:intergenic 40.0%
CTGTTGTGTGATTTACACCT+AGG - chr4_3:71179126-71179145 Msa0660450:intron 40.0%
! ACCTAGGCTGATCATGATTT+TGG - chr4_3:71179142-71179161 Msa0660450:intron 40.0%
TCCAAAATCATGATCAGCCT+AGG + chr4_3:71179146-71179165 None:intergenic 40.0%
GATAAGAAGGAACGGGTAAA+AGG - chr4_3:71179197-71179216 Msa0660450:intron 40.0%
GCAGTCTCATTGATAAGACA+AGG + chr4_3:71179251-71179270 None:intergenic 40.0%
GTCTTATCAATGAGACTGCT+TGG - chr4_3:71179252-71179271 Msa0660450:CDS 40.0%
ATCTTGCTACAACATGCATG+GGG + chr4_3:71179282-71179301 None:intergenic 40.0%
ACATCGTCAACTAAACATCC+TGG + chr4_3:71179440-71179459 None:intergenic 40.0%
! ACCACCAAAATTTTCGTGCT+CGG - chr4_3:71179486-71179505 Msa0660450:CDS 40.0%
ACCCGAGCAAAAATAATTGG+TGG + chr4_3:71179565-71179584 None:intergenic 40.0%
CAGACCCGAGCAAAAATAAT+TGG + chr4_3:71179568-71179587 None:intergenic 40.0%
TCACAAACTTGCACTCCAAA+AGG + chr4_3:71179669-71179688 None:intergenic 40.0%
CAACTCATACAACTATAGCG+TGG + chr4_3:71179768-71179787 None:intergenic 40.0%
! ACAAGGGGTGTAAATATCAG+TGG + chr4_3:71179799-71179818 None:intergenic 40.0%
! CCGCAACAAAGATATTTTCC+TGG + chr4_3:71179925-71179944 None:intergenic 40.0%
GTTGCGGTCAAACTAATTTC+TGG - chr4_3:71179938-71179957 Msa0660450:CDS 40.0%
CTGTGATGACTTCTATCTAC+AGG + chr4_3:71179978-71179997 None:intergenic 40.0%
CTGTAGATAGAAGTCATCAC+AGG - chr4_3:71179976-71179995 Msa0660450:CDS 40.0%
TAAATTCAGCAGCTCTGTAC+AGG - chr4_3:71180170-71180189 Msa0660450:five_prime_UTR 40.0%
CACACACTCTCTCTATTCCT+TGG - chr4_3:71176482-71176501 Msa0660450:three_prime_UTR 45.0%
!!! TGTCGTTTTGTGGTTCACCA+AGG + chr4_3:71176502-71176521 None:intergenic 45.0%
TTGAGGTTTGAGGAGGGAAT+TGG + chr4_3:71176591-71176610 None:intergenic 45.0%
!!! GTTGGTTTTGAGGTTTGAGG+AGG + chr4_3:71176598-71176617 None:intergenic 45.0%
!! CGTCGTTTAGGTTTGGTGAT+GGG + chr4_3:71176641-71176660 None:intergenic 45.0%
! ACACTTGCGTCGTTTAGGTT+TGG + chr4_3:71176648-71176667 None:intergenic 45.0%
TGTTGCGGAAGTGGATATTG+TGG + chr4_3:71176678-71176697 None:intergenic 45.0%
GAATCGGGTAATTGAGGTTC+GGG + chr4_3:71176710-71176729 None:intergenic 45.0%
GAAGGTGAATCGGGTAATTG+AGG + chr4_3:71176716-71176735 None:intergenic 45.0%
TCTACCAGGTGAGTAACGAA+CGG + chr4_3:71176747-71176766 None:intergenic 45.0%
TCAAACGGACATTCCACTTC+GGG - chr4_3:71176812-71176831 Msa0660450:three_prime_UTR 45.0%
GGTGAGTGCAGAGTTGAATT+TGG + chr4_3:71176870-71176889 None:intergenic 45.0%
TCCAACGCTCTTCGAAATGA+TGG - chr4_3:71176940-71176959 Msa0660450:intron 45.0%
! ACCATCATTTCGAAGAGCGT+TGG + chr4_3:71176944-71176963 None:intergenic 45.0%
! TGCCGATTGTGATGATGTTG+AGG - chr4_3:71177303-71177322 Msa0660450:intron 45.0%
! GGGTGATACATAGGCTTTGA+CGG + chr4_3:71177718-71177737 None:intergenic 45.0%
CCTATGTATCACCCACACTT+CGG - chr4_3:71177724-71177743 Msa0660450:intron 45.0%
ACGTAACCAACCATACGTCT+CGG + chr4_3:71177771-71177790 None:intergenic 45.0%
TGGTGTCCTTGTCTGATTCA+TGG - chr4_3:71177846-71177865 Msa0660450:CDS 45.0%
TCTTAGGTTTCGGCTGCAAT+TGG - chr4_3:71177890-71177909 Msa0660450:CDS 45.0%
GCTGCAATTGGATTTGATGC+TGG - chr4_3:71177902-71177921 Msa0660450:CDS 45.0%
!! TGCTGGGGTTTTGTCTTGTT+TGG - chr4_3:71177919-71177938 Msa0660450:CDS 45.0%
GGAGGATGAAGAAGACAAAG+TGG - chr4_3:71177967-71177986 Msa0660450:CDS 45.0%
TCTTGAATCTGTTGGAGCTG+TGG - chr4_3:71178012-71178031 Msa0660450:CDS 45.0%
!!! AGCTGTGGAGGTTTTGAAGA+GGG - chr4_3:71178027-71178046 Msa0660450:CDS 45.0%
GTTTCCACTGAAGTTGCCAA+TGG - chr4_3:71178049-71178068 Msa0660450:CDS 45.0%
! TGAAGAGGGGAATGATAACG+AGG - chr4_3:71178075-71178094 Msa0660450:CDS 45.0%
TCGGAAGGAGTCGTTATACT+CGG - chr4_3:71178213-71178232 Msa0660450:CDS 45.0%
!!! ACTTCGTCACCACTTTTTGC+GGG - chr4_3:71178258-71178277 Msa0660450:CDS 45.0%
CTGAGGATTTCCTGAAAACG+TGG - chr4_3:71178374-71178393 Msa0660450:CDS 45.0%
! ATTCAGATGCCCACGTTTTC+AGG + chr4_3:71178387-71178406 None:intergenic 45.0%
GTTACCGCTAGGTTGTTTGT+TGG - chr4_3:71178466-71178485 Msa0660450:CDS 45.0%
! GCTAGGTTGTTTGTTGGGAT+TGG - chr4_3:71178472-71178491 Msa0660450:CDS 45.0%
GATTGGAAAGGGACAGTTGT+TGG - chr4_3:71178489-71178508 Msa0660450:CDS 45.0%
!! TGTTGGCTTCTAAAGAGGCT+AGG - chr4_3:71178506-71178525 Msa0660450:CDS 45.0%
TATATGCCTATCAAGGCCCT+TGG + chr4_3:71178596-71178615 None:intergenic 45.0%
! GGTTTGAAGTTTGGTGGAGA+AGG - chr4_3:71178737-71178756 Msa0660450:CDS 45.0%
TCAAGTGTGCTCAACTGATG+CGG + chr4_3:71178818-71178837 None:intergenic 45.0%
! TTTTTCCACGGTGGAGGAAA+CGG - chr4_3:71178846-71178865 Msa0660450:intron 45.0%
CAATGTCTTCATGCTTTGCC+TGG - chr4_3:71179016-71179035 Msa0660450:intron 45.0%
GGACTCTCTTGTCAGTTGAA+TGG - chr4_3:71179163-71179182 Msa0660450:intron 45.0%
AGTCACACCTTTAGTATGCC+AGG - chr4_3:71179419-71179438 Msa0660450:CDS 45.0%
! CCACCAAAATTTTCGTGCTC+GGG - chr4_3:71179487-71179506 Msa0660450:CDS 45.0%
! AGACCCGAGCACGAAAATTT+TGG + chr4_3:71179493-71179512 None:intergenic 45.0%
TGGAAGAAAACACACTGCAG+TGG + chr4_3:71179905-71179924 None:intergenic 45.0%
! ACTGCAGTGTGTTTTCTTCC+AGG - chr4_3:71179904-71179923 Msa0660450:CDS 45.0%
CTCTGTACAGGTCTCATTAC+AGG - chr4_3:71180182-71180201 Msa0660450:five_prime_UTR 45.0%
TGTGAACCTGTGAGTGAAGG+AGG + chr4_3:71176450-71176469 None:intergenic 50.0%
GTGTGTGAACCTGTGAGTGA+AGG + chr4_3:71176453-71176472 None:intergenic 50.0%
!! GCGTCGTTTAGGTTTGGTGA+TGG + chr4_3:71176642-71176661 None:intergenic 50.0%
TCACGACACTTGCGTCGTTT+AGG + chr4_3:71176653-71176672 None:intergenic 50.0%
! GGTAATTGAGGTTCGGGTTC+GGG + chr4_3:71176704-71176723 None:intergenic 50.0%
! GGGTAATTGAGGTTCGGGTT+CGG + chr4_3:71176705-71176724 None:intergenic 50.0%
TACACCGTTCGTTACTCACC+TGG - chr4_3:71176740-71176759 Msa0660450:three_prime_UTR 50.0%
!! CGACATTGGGTTGAGAAGAC+CGG + chr4_3:71176894-71176913 None:intergenic 50.0%
!! GGACTTGATCGGGTTTTGTC+CGG + chr4_3:71176923-71176942 None:intergenic 50.0%
!! GAAGAGCGTTGGACTTGATC+GGG + chr4_3:71176933-71176952 None:intergenic 50.0%
!! CGAAGAGCGTTGGACTTGAT+CGG + chr4_3:71176934-71176953 None:intergenic 50.0%
CCACCGATCAGAAAGCTTCA+CGG + chr4_3:71177239-71177258 None:intergenic 50.0%
CCGAAGTGTGGGTGATACAT+AGG + chr4_3:71177727-71177746 None:intergenic 50.0%
TGAATCTGTTGGAGCTGTGG+AGG - chr4_3:71178015-71178034 Msa0660450:CDS 50.0%
!!! GAGCTGTGGAGGTTTTGAAG+AGG - chr4_3:71178026-71178045 Msa0660450:CDS 50.0%
ACCTCAAACCTGTGAACTGC+AGG + chr4_3:71178439-71178458 None:intergenic 50.0%
AGGTTAGCAGAGTTACCGCT+AGG - chr4_3:71178455-71178474 Msa0660450:CDS 50.0%
!! TTGGATGAGGAGAGCATCCA+AGG - chr4_3:71178576-71178595 Msa0660450:CDS 50.0%
!! TGGATGAGGAGAGCATCCAA+GGG - chr4_3:71178577-71178596 Msa0660450:CDS 50.0%
TTCTCACCTTACCACTCTCC+TGG - chr4_3:71178641-71178660 Msa0660450:CDS 50.0%
ATTTCCTGTTGCCAGGAGAG+TGG + chr4_3:71178655-71178674 None:intergenic 50.0%
TTTGGTGGAGAAGGGCTTTC+TGG - chr4_3:71178746-71178765 Msa0660450:intron 50.0%
! AGGGCTTTCTGGAAGAGGAA+CGG - chr4_3:71178757-71178776 Msa0660450:intron 50.0%
! CCCGAGCACGAAAATTTTGG+TGG + chr4_3:71179490-71179509 None:intergenic 50.0%
CCTGTGAGTGAAGGAGGCAA+AGG + chr4_3:71176444-71176463 None:intergenic 55.0%
CCTTTGCCTCCTTCACTCAC+AGG - chr4_3:71176441-71176460 Msa0660450:three_prime_UTR 55.0%
!! TTCGGGTTGTGTTGCGGAAG+TGG + chr4_3:71176687-71176706 None:intergenic 55.0%
!! TTCGGGTTCGGGTTGTGTTG+CGG + chr4_3:71176693-71176712 None:intergenic 55.0%
! CGGACATTCCACTTCGGGTT+CGG - chr4_3:71176817-71176836 Msa0660450:three_prime_UTR 55.0%
! GGACATTCCACTTCGGGTTC+GGG - chr4_3:71176818-71176837 Msa0660450:three_prime_UTR 55.0%
TTCAACTCTGCACTCACCGC+CGG - chr4_3:71176872-71176891 Msa0660450:three_prime_UTR 55.0%
!! CATTGGGTTGAGAAGACCGG+CGG + chr4_3:71176891-71176910 None:intergenic 55.0%
!! CTTGATCGGGTTTTGTCCGG+CGG + chr4_3:71176920-71176939 None:intergenic 55.0%
CCGTGAAGCTTTCTGATCGG+TGG - chr4_3:71177236-71177255 Msa0660450:intron 55.0%
GACGCAGAGTCAACAGCGTT+CGG - chr4_3:71177258-71177277 Msa0660450:intron 55.0%
TGCGTGGCTGTGTTTGTGTC+TGG - chr4_3:71177826-71177845 Msa0660450:CDS 55.0%
TCTTCTTCATCCTCCGCCCA+CGG + chr4_3:71177962-71177981 None:intergenic 55.0%
AAGGCCAGGCGAGAGATGAA+AGG - chr4_3:71178145-71178164 Msa0660450:CDS 55.0%
AGGCCAGGCGAGAGATGAAA+GGG - chr4_3:71178146-71178165 Msa0660450:CDS 55.0%
CAACCCTTTCATCTCTCGCC+TGG + chr4_3:71178152-71178171 None:intergenic 55.0%
CAGGCGAGAGATGAAAGGGT+TGG - chr4_3:71178150-71178169 Msa0660450:CDS 55.0%
!!! TCACCACTTTTTGCGGGCTG+CGG - chr4_3:71178264-71178283 Msa0660450:CDS 55.0%
AATCCGCAGCCCGCAAAAAG+TGG + chr4_3:71178270-71178289 None:intergenic 55.0%
! CTAAGGTGCCTGCAGTTCAC+AGG - chr4_3:71178428-71178447 Msa0660450:CDS 55.0%
GCCTGCAGTTCACAGGTTTG+AGG - chr4_3:71178435-71178454 Msa0660450:CDS 55.0%
GAGCATCCAAGGGCCTTGAT+AGG - chr4_3:71178587-71178606 Msa0660450:CDS 55.0%
CTGTTGCCAGGAGAGTGGTA+AGG + chr4_3:71178650-71178669 None:intergenic 55.0%
CTTACCACTCTCCTGGCAAC+AGG - chr4_3:71178648-71178667 Msa0660450:CDS 55.0%
! GGAGAAGGGCTTTCTGGAAG+AGG - chr4_3:71178752-71178771 Msa0660450:intron 55.0%
AGAGGAACGGAGAGCAAGAC+CGG - chr4_3:71178770-71178789 Msa0660450:intron 55.0%
GTCATGACCCGAACCCGAAG+TGG + chr4_3:71176828-71176847 None:intergenic 60.0%
! GTCTGGGACACCGAGACGTA+TGG - chr4_3:71177758-71177777 Msa0660450:intron 60.0%
GGGACACCGAGACGTATGGT+TGG - chr4_3:71177762-71177781 Msa0660450:intron 60.0%
AGTACTTGGAAGCGGCACCG+TGG - chr4_3:71177942-71177961 Msa0660450:CDS 60.0%
GTACTTGGAAGCGGCACCGT+GGG - chr4_3:71177943-71177962 Msa0660450:CDS 60.0%
!! GATCGGGTTTTGTCCGGCGG+CGG + chr4_3:71176917-71176936 None:intergenic 65.0%
GGCTGCGGATTCAGACCTGC+AGG - chr4_3:71178279-71178298 Msa0660450:CDS 65.0%
! GTCTGCCGTTTCCTCCACCG+TGG + chr4_3:71178854-71178873 None:intergenic 65.0%
CAACCCAATGTCGCCGCCGC+CGG - chr4_3:71176901-71176920 Msa0660450:intron 70.0%
TGTCCGGCGGCGGCGACATT+GGG + chr4_3:71176907-71176926 None:intergenic 70.0%
TTGTCCGGCGGCGGCGACAT+TGG + chr4_3:71176908-71176927 None:intergenic 70.0%
CTTGGAAGCGGCACCGTGGG+CGG - chr4_3:71177946-71177965 Msa0660450:CDS 70.0%
! GGAAGCGGCACCGTGGGCGG+AGG - chr4_3:71177949-71177968 Msa0660450:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 71176410 71180247 71176410 ID=Msa0660450;Name=Msa0660450
chr4_3 mRNA 71176410 71180247 71176410 ID=Msa0660450-mRNA-1;Parent=Msa0660450;Name=Msa0660450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=141|1|1|1|0.5|0.33|3|541|602
chr4_3 exon 71176410 71176904 71176410 ID=Msa0660450-mRNA-1:exon:21292;Parent=Msa0660450-mRNA-1
chr4_3 exon 71177774 71178761 71177774 ID=Msa0660450-mRNA-1:exon:21291;Parent=Msa0660450-mRNA-1
chr4_3 exon 71179240 71180247 71179240 ID=Msa0660450-mRNA-1:exon:21290;Parent=Msa0660450-mRNA-1
chr4_3 five_prime_UTR 71180107 71180247 71180107 ID=Msa0660450-mRNA-1:five_prime_utr;Parent=Msa0660450-mRNA-1
chr4_3 CDS 71179240 71180106 71179240 ID=Msa0660450-mRNA-1:cds;Parent=Msa0660450-mRNA-1
chr4_3 CDS 71177820 71178761 71177820 ID=Msa0660450-mRNA-1:cds;Parent=Msa0660450-mRNA-1
chr4_3 three_prime_UTR 71177774 71177819 71177774 ID=Msa0660450-mRNA-1:three_prime_utr;Parent=Msa0660450-mRNA-1
chr4_3 three_prime_UTR 71176410 71176904 71176410 ID=Msa0660450-mRNA-1:three_prime_utr;Parent=Msa0660450-mRNA-1
Gene Sequence

>Msa0660450

ATGGCAACGACAACTACAACAACTAAAACAACAATAACCAATTCCCTCCTCAAACCTCAAAACCAACAACAACAACAACAACAACAACCCATCACCAAACCTAAACGACGCAAGTGTCGTGAAACCACAATATCCACTTCCGCAACACAACCCGAACCCGAACCTCAATTACCCGATTCACCTTCTACTTACACCGTTCGTTACTCACCTGGTAGATTTTCACCAATCATGGATTTCACACACTCTTCTTCTTCACCAATTTCAAACGGACATTCCACTTCGGGTTCGGGTCATGACCCTTTTCCTTCAAGCTTCACCAAATTCAACTCTGCACTCACCGCCGGTCTTCTCAACCCAATGTCGCCGCCGCCGGACAAAACCCGATCAAGTCCAACGCTCTTCGAAATGATGGTCAACGAACCCGATATTCAACAACGTACAAATCATAATCAGATCCCAATCAACAATGCAACTTCTTCAATGCAAAAACCCCAAATTATTGCACAAGATCGAGAAACCCTAATGATGAATCGAATTTCTGAACTATTATCTTCACGTAGTCCTGGTAATCATTTCAATGATTCATCTTCCAGTGATATTAAGCTTACGCTTAGTTCTAAAGATGGATTTAGTGTTTCTATGAATGTGCATCGTCAGATTCTTGTTGCGCATAGTAGATTTTTTTCCGTGAAGCTTTCTGATCGGTGGACGCAGAGTCAACAGCGTTCGGCGTTGCCGTATCTTGTTGAAATTGCCGATTGTGATGATGTTGAGGTTTATGTGGAGACTTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTTATGAAAGAGGATGTTTCTAAAGTTTTGGGTATTTTGAAGGTTTCGGCTGCAATTGGATTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCACCGTGGGCGGAGGATGAAGAAGACAAAGTGGCGTCGCTCCTGTCTGAACTTCGTCTTGAATCTGTTGGAGCTGTGGAGGTTTTGAAGAGGGTTTCCACTGAAGTTGCCAATGGATATGAAGAGGGGAATGATAACGAGGAAGTCTTACTTAAACTTATTCGTGTGGTTCTTGAAGGTAAAGATGAAAAGGCCAGGCGAGAGATGAAAGGGTTGGTGTCGAAGATGCTCCATGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGTTATACTCGGCATGTGATGATTGTCTGCAATTACTTCGTCACCACTTTTTGCGGGCTGCGGATTCAGACCTGCAGGATGTAAGTCAAATTGCACGACAAGCAGATAATTTACATTGGATTTTGGATATTTTGATTGATAGACAGATTGCTGAGGATTTCCTGAAAACGTGGGCATCTGAATCAGAATTATCTGAAGCACATTCTAAGGTGCCTGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACCGCTAGGTTGTTTGTTGGGATTGGAAAGGGACAGTTGTTGGCTTCTAAAGAGGCTAGGTGTTTACTTCTCAAAACGTGGCTTGTTCCCTTTTATGATGATTTTGGTTGGATGAGGAGAGCATCCAAGGGCCTTGATAGGCATATAATTGAGGATGGTCTTAGTAACACAATTCTCACCTTACCACTCTCCTGGCAACAGGAAATTTTGCTTGCTTGGTTTAATCGCTTCTTGAATTCCGGTGAAGATTGCCCTAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAACGGAGAGCAAGACCGGACAAGACAATTACGAATTACATCCGCATCAGTTGAGCACACTTGA
Protein sequence

>Msa0660450

MATTTTTTKTTITNSLLKPQNQQQQQQQQPITKPKRRKCRETTISTSATQPEPEPQLPDSPSTYTVRYSPGRFSPIMDFTHSSSSPISNGHSTSGSGHDPFPSSFTKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMVNEPDIQQRTNHNQIPINNATSSMQKPQIIAQDRETLMMNRISELLSSRSPGNHFNDSSSSDIKLTLSSKDGFSVSMNVHRQILVAHSRFFSVKLSDRWTQSQQRSALPYLVEIADCDDVEVYVETLRLMYCKDLRKKLMKEDVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEDKVASLLSELRLESVGAVEVLKRVSTEVANGYEEGNDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYSACDDCLQLLRHHFLRAADSDLQDVSQIARQADNLHWILDILIDRQIAEDFLKTWASESELSEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKEARCLLLKTWLVPFYDDFGWMRRASKGLDRHIIEDGLSNTILTLPLSWQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQDRTRQLRITSASVEHT*