AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526480 MtrunA17_Chr8g0387311 98.333 600 5 3 1 600 1 595 0.0 1207
Msa0526480 MtrunA17_Chr4g0030381 46.799 453 210 12 154 593 60 494 1.17e-120 366
Msa0526480 MtrunA17_Chr8g0373811 44.146 410 199 5 184 577 124 519 1.30e-118 362
Msa0526480 MtrunA17_Chr3g0130121 34.250 400 239 6 197 577 131 525 6.38e-80 261
Msa0526480 MtrunA17_Chr4g0034941 25.652 460 263 16 174 576 35 472 3.18e-24 106
Msa0526480 MtrunA17_Chr7g0267491 22.877 424 274 13 190 576 14 421 1.23e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526480 AT1G63850.1 68.257 545 143 6 86 600 4 548 0.0 734
Msa0526480 AT5G60050.1 42.946 482 230 10 123 593 50 497 5.39e-131 393
Msa0526480 AT3G50780.1 42.026 464 238 8 120 577 60 498 3.05e-115 353
Msa0526480 AT3G50780.2 42.026 464 238 8 120 577 60 498 3.05e-115 353
Msa0526480 AT2G13690.1 35.965 342 203 4 247 577 198 534 1.15e-71 240
Msa0526480 AT3G05675.2 25.352 426 262 14 190 576 14 422 5.47e-19 90.5
Msa0526480 AT3G05675.1 25.352 426 262 14 190 576 14 422 5.47e-19 90.5
Msa0526480 AT3G05675.3 25.352 426 262 14 190 576 14 422 5.47e-19 90.5

Find 190 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACCCTCTTTGAATATT+AGG 0.090085 3_4:-80362122 None:intergenic
TTTACACCCCTTGTCATATT+TGG 0.106495 3_4:+80363206 Msa0526480:three_prime_UTR
TTACAGGCTAATTTGCTTTA+TGG 0.132692 3_4:+80363599 Msa0526480:three_prime_UTR
CTGCTGAATTTATTAAAATT+TGG 0.164501 3_4:-80363560 None:intergenic
CTCGATCTTGTGCAATAATT+TGG 0.179077 3_4:-80360443 None:intergenic
TTTGGTGGAGAAGGGCTTTC+TGG 0.184742 3_4:+80362147 Msa0526480:CDS
CAGAAATTCGATTCATCATT+AGG 0.195290 3_4:-80360470 None:intergenic
CCAACCAAAATCATCATAAA+AGG 0.206268 3_4:-80361958 None:intergenic
AGAGGATGTTTCTAAAGTTT+TGG 0.218381 3_4:+80360785 Msa0526480:CDS
TCGATCTTGTGCAATAATTT+GGG 0.224035 3_4:-80360442 None:intergenic
AGATAATTTACATTGGATTT+TGG 0.235197 3_4:+80361728 Msa0526480:CDS
CAAACCCTCTTTGAATATTA+GGG 0.238945 3_4:-80362121 None:intergenic
GGTAATTGAGGTTCGGGTTC+GGG 0.240743 3_4:-80360102 None:intergenic
GTTGCGGTCAAACTAATTTC+TGG 0.258376 3_4:+80363339 Msa0526480:three_prime_UTR
TTCAAAGAGGGTTTGAAGTT+TGG 0.270988 3_4:+80362129 Msa0526480:CDS
ATTTGTACGTTGTTGAATAT+CGG 0.277205 3_4:-80360373 None:intergenic
TGATGTATTGTAAGGATCTT+AGG 0.291770 3_4:+80360748 Msa0526480:CDS
GGGTAATTGAGGTTCGGGTT+CGG 0.296748 3_4:-80360103 None:intergenic
CTCTGTACAGGTCTCATTAC+AGG 0.318230 3_4:+80363583 Msa0526480:three_prime_UTR
TTTGTCTTGTTTGGAGTACT+TGG 0.324655 3_4:+80361329 Msa0526480:CDS
CGGACATTCCACTTCGGGTT+CGG 0.335543 3_4:+80360218 Msa0526480:CDS
TTTAATCGCTTCTTGAATTC+CGG 0.339244 3_4:+80362089 Msa0526480:CDS
AGAAATTCGATTCATCATTA+GGG 0.343445 3_4:-80360469 None:intergenic
TTACACCCCTTGTCATATTT+GGG 0.343583 3_4:+80363207 Msa0526480:three_prime_UTR
GTGGAATGTCCGTTTGAAAT+TGG 0.344811 3_4:-80360207 None:intergenic
ATTATCTGAAGCACATTCTA+AGG 0.352510 3_4:+80361812 Msa0526480:CDS
TTGTCCGGCGGCGGCGACAT+TGG 0.355009 3_4:-80360306 None:intergenic
GGACATTCCACTTCGGGTTC+GGG 0.355590 3_4:+80360219 Msa0526480:CDS
TGTCCGGCGGCGGCGACATT+GGG 0.361539 3_4:-80360305 None:intergenic
CTATTCAGCTTGTATTTGTC+AGG 0.365329 3_4:+80363260 Msa0526480:three_prime_UTR
CTGCAATTGGATTTGATGCT+GGG 0.368070 3_4:+80361304 Msa0526480:CDS
TCTTAGGTTTCGGCTGCAAT+TGG 0.368154 3_4:+80361291 Msa0526480:intron
GAATCGGGTAATTGAGGTTC+GGG 0.373650 3_4:-80360108 None:intergenic
TTGAGGTTTGAGGAGGGAAT+TGG 0.373910 3_4:-80359995 None:intergenic
GGTGAGTGCAGAGTTGAATT+TGG 0.374911 3_4:-80360268 None:intergenic
TCACGACACTTGCGTCGTTT+AGG 0.377773 3_4:-80360051 None:intergenic
CTTATTCGTGTGGTTCTTGA+AGG 0.383037 3_4:+80361513 Msa0526480:CDS
TCAAACGGACATTCCACTTC+GGG 0.383219 3_4:+80360213 Msa0526480:CDS
AAAACCTCTTAGATAGATAA+TGG 0.388467 3_4:+80359939 Msa0526480:exon
CTTACGCTTAGTTCTAAAGA+TGG 0.389796 3_4:+80360555 Msa0526480:CDS
ACTAGTTCATTAACATTAAA+CGG 0.390704 3_4:-80363453 None:intergenic
TTTGAGGTTGATGTATTGTA+AGG 0.401471 3_4:+80360740 Msa0526480:CDS
CTAATTGAATACTAGTTTGA+AGG 0.403499 3_4:+80363499 Msa0526480:three_prime_UTR
GAAGAAGTTGCATTGTTGAT+TGG 0.404137 3_4:-80360408 None:intergenic
TACAACTATAGCGTGGTATA+CGG 0.406813 3_4:-80363159 None:intergenic
GCTAGGTTGTTTGTTGGGAT+TGG 0.410646 3_4:+80361873 Msa0526480:CDS
TTCGGGTTGTGTTGCGGAAG+TGG 0.411944 3_4:-80360085 None:intergenic
TTGAATTTGGTGAAGCTTGA+AGG 0.416618 3_4:-80360255 None:intergenic
GCTGCAATTGGATTTGATGC+TGG 0.422016 3_4:+80361303 Msa0526480:CDS
GGTTTGAAGTTTGGTGGAGA+AGG 0.426450 3_4:+80362138 Msa0526480:CDS
TTTGTACGTTGTTGAATATC+GGG 0.426581 3_4:-80360372 None:intergenic
AGGTTTATGTGGAGACTTTG+AGG 0.431350 3_4:+80360724 Msa0526480:CDS
AAGAAGTTGCATTGTTGATT+GGG 0.431702 3_4:-80360407 None:intergenic
GATTGGAAAGGGACAGTTGT+TGG 0.434584 3_4:+80361890 Msa0526480:CDS
CTGTGATGACTTCTATCTAC+AGG 0.435764 3_4:-80363376 None:intergenic
CGAAGAGCGTTGGACTTGAT+CGG 0.439570 3_4:-80360332 None:intergenic
AAAGAGGGTTTGAAGTTTGG+TGG 0.440178 3_4:+80362132 Msa0526480:CDS
GCGTCGTTTAGGTTTGGTGA+TGG 0.445877 3_4:-80360040 None:intergenic
GTGGAATATACTAATTTAGT+AGG 0.448228 3_4:-80363284 None:intergenic
AATATTAGGGCAATCTTCAC+CGG 0.449000 3_4:-80362108 None:intergenic
TTGTTTGTTGGGATTGGAAA+GGG 0.449026 3_4:+80361879 Msa0526480:CDS
GAAGAGCGTTGGACTTGATC+GGG 0.449446 3_4:-80360331 None:intergenic
TTACCGCTAGGTTGTTTGTT+GGG 0.451093 3_4:+80361868 Msa0526480:CDS
GAGCATCCAAGGGCCTTGAT+AGG 0.451859 3_4:+80361988 Msa0526480:CDS
GTTGCCATTATCTATCTAAG+AGG 0.453656 3_4:-80359943 None:intergenic
GTTCATTAACATTAAACGGT+TGG 0.456408 3_4:-80363449 None:intergenic
ACACTTGCGTCGTTTAGGTT+TGG 0.462451 3_4:-80360046 None:intergenic
AGGAGGCAAAGGTTAATAAA+TGG 0.464371 3_4:-80359841 None:intergenic
TGAATCGGGTAATTGAGGTT+CGG 0.466042 3_4:-80360109 None:intergenic
CTTACCACTCTCCTGGCAAC+AGG 0.466584 3_4:+80362049 Msa0526480:CDS
GACGCAGAGTCAACAGCGTT+CGG 0.469378 3_4:+80360659 Msa0526480:CDS
AACCTCAACATCATCACAAT+CGG 0.470361 3_4:-80360706 None:intergenic
TCCAACGCTCTTCGAAATGA+TGG 0.471774 3_4:+80360341 Msa0526480:CDS
TAACGAACGGTGTAAGTAGA+AGG 0.472517 3_4:-80360132 None:intergenic
TGGTGAAGCTTGAAGGAAAA+GGG 0.473098 3_4:-80360248 None:intergenic
ATTCTTCTCAGAATGATCTT+CGG 0.473417 3_4:+80361595 Msa0526480:CDS
GTTACCGCTAGGTTGTTTGT+TGG 0.477193 3_4:+80361867 Msa0526480:CDS
TCTTCTTCACCAATTTCAAA+CGG 0.478223 3_4:+80360198 Msa0526480:CDS
CACACACTCTCTCTATTCCT+TGG 0.479202 3_4:+80359889 Msa0526480:five_prime_UTR
AAGCAAAATTTCCTGTTGCC+AGG 0.480844 3_4:-80362060 None:intergenic
CCTTTGCCTCCTTCACTCAC+AGG 0.482247 3_4:+80359852 Msa0526480:five_prime_UTR
AAGCGTAAGCTTAATATCAC+TGG 0.485433 3_4:-80360541 None:intergenic
GTTTGAAGTTTGGTGGAGAA+GGG 0.485596 3_4:+80362139 Msa0526480:CDS
CGTCGTTTAGGTTTGGTGAT+GGG 0.487514 3_4:-80360039 None:intergenic
ACAGTTGTTGGCTTCTAAAG+AGG 0.487790 3_4:+80361902 Msa0526480:CDS
GGTGTAAGTAGAAGGTGAAT+CGG 0.487879 3_4:-80360124 None:intergenic
CTAAGGTGCCTGCAGTTCAC+AGG 0.488194 3_4:+80361829 Msa0526480:CDS
ACCTCAAACCTGTGAACTGC+AGG 0.488487 3_4:-80361837 None:intergenic
TAAATTCAGCAGCTCTGTAC+AGG 0.489466 3_4:+80363571 Msa0526480:three_prime_UTR
TAATTCGTAATTGTCTTGTC+CGG 0.492734 3_4:-80362190 None:intergenic
ATTCCCCTCTTCATATCCAT+TGG 0.492767 3_4:-80361466 None:intergenic
GAACTTCGTCTTGAATCTGT+TGG 0.492847 3_4:+80361405 Msa0526480:CDS
CAACCCAATGTCGCCGCCGC+CGG 0.496960 3_4:+80360302 Msa0526480:CDS
TGATGATGTTGAGGTTTATG+TGG 0.498709 3_4:+80360713 Msa0526480:CDS
AGAGGAACGGAGAGCAAGAC+CGG 0.499813 3_4:+80362171 Msa0526480:CDS
TTGGTGAAGCTTGAAGGAAA+AGG 0.499866 3_4:-80360249 None:intergenic
TCTTCTTCATCCTCCGCCCA+CGG 0.501079 3_4:-80361360 None:intergenic
CAATTTGACTTACATCCTGC+AGG 0.501110 3_4:-80361695 None:intergenic
CAACCAAAATCATCATAAAA+GGG 0.501348 3_4:-80361957 None:intergenic
TGAATCTGTTGGAGCTGTGG+AGG 0.503064 3_4:+80361416 Msa0526480:CDS
GGAGAAGGGCTTTCTGGAAG+AGG 0.504200 3_4:+80362153 Msa0526480:CDS
TCTTGAAGGTAAAGATGAAA+AGG 0.505170 3_4:+80361527 Msa0526480:CDS
GGAAGCGGCACCGTGGGCGG+AGG 0.505445 3_4:+80361350 Msa0526480:CDS
CCGTGAAGCTTTCTGATCGG+TGG 0.511552 3_4:+80360637 Msa0526480:CDS
GGCTGCGGATTCAGACCTGC+AGG 0.512151 3_4:+80361680 Msa0526480:CDS
CTATTATCTTCACGTAGTCC+TGG 0.515173 3_4:+80360495 Msa0526480:CDS
CCTCAATTATATGCCTATCA+AGG 0.515740 3_4:-80362001 None:intergenic
CCACCGATCAGAAAGCTTCA+CGG 0.518624 3_4:-80360637 None:intergenic
CCGAGGATTTCCTGAAAATG+TGG 0.519742 3_4:+80361775 Msa0526480:CDS
CAACCCTTTCATCTCTCGCC+TGG 0.520699 3_4:-80361550 None:intergenic
ACCATCATTTCGAAGAGCGT+TGG 0.521062 3_4:-80360342 None:intergenic
TTGTTTGGAGTACTTGGAAG+CGG 0.521954 3_4:+80361335 Msa0526480:CDS
CGATCTTGTGCAATAATTTG+GGG 0.527512 3_4:-80360441 None:intergenic
TTCTCACCTTACCACTCTCC+TGG 0.528095 3_4:+80362042 Msa0526480:CDS
TTTCCGTGAAGCTTTCTGAT+CGG 0.529247 3_4:+80360634 Msa0526480:CDS
TTCAACTCTGCACTCACCGC+CGG 0.531671 3_4:+80360273 Msa0526480:CDS
GCCTGCAGTTCACAGGTTTG+AGG 0.532007 3_4:+80361836 Msa0526480:CDS
TTCGGGTTCGGGTTGTGTTG+CGG 0.534075 3_4:-80360091 None:intergenic
ATATCCATTGGCAACTTCAG+TGG 0.534213 3_4:-80361454 None:intergenic
TATATGCCTATCAAGGCCCT+TGG 0.534380 3_4:-80361994 None:intergenic
TCTTGAATCTGTTGGAGCTG+TGG 0.536388 3_4:+80361413 Msa0526480:CDS
TTCTCAGAATGATCTTCGGA+AGG 0.542018 3_4:+80361599 Msa0526480:CDS
TGTTGCGGAAGTGGATATTG+TGG 0.542327 3_4:-80360076 None:intergenic
GAAGGTGAATCGGGTAATTG+AGG 0.543986 3_4:-80360114 None:intergenic
CATTCTGAGAAGAATTCTCA+TGG 0.544991 3_4:-80361587 None:intergenic
TTCAAACGGACATTCCACTT+CGG 0.546718 3_4:+80360212 Msa0526480:CDS
TTGGATGAGGAGAGCATCCA+AGG 0.549081 3_4:+80361977 Msa0526480:CDS
TAGGAAGAAGCTTATGAAAG+AGG 0.549581 3_4:+80360767 Msa0526480:CDS
TTAGGGAATTCTAAAGTCGA+AGG 0.551923 3_4:-80363531 None:intergenic
GACAAGCAGATAATTTACAT+TGG 0.554762 3_4:+80361721 Msa0526480:CDS
GTTGTTTGTTGGGATTGGAA+AGG 0.555381 3_4:+80361878 Msa0526480:CDS
CCAGGAAAATATCTTTGTTG+CGG 0.555704 3_4:+80363323 Msa0526480:three_prime_UTR
CGACATTGGGTTGAGAAGAC+CGG 0.556837 3_4:-80360292 None:intergenic
TGTTGGCTTCTAAAGAGGCT+AGG 0.556855 3_4:+80361907 Msa0526480:CDS
TCGGCAATTTCAACAAGATA+CGG 0.559349 3_4:-80360687 None:intergenic
GTGTAAGTAGAAGGTGAATC+GGG 0.559723 3_4:-80360123 None:intergenic
CCTTGATAGGCATATAATTG+AGG 0.562443 3_4:+80362001 Msa0526480:CDS
GTACTTGGAAGCGGCACCGT+GGG 0.570304 3_4:+80361344 Msa0526480:CDS
ATTCAAGACGAAGTTCAGAC+AGG 0.573714 3_4:-80361398 None:intergenic
GTTTCCACTGAAGTTGCCAA+TGG 0.576467 3_4:+80361450 Msa0526480:CDS
TGCCGATTGTGATGATGTTG+AGG 0.578787 3_4:+80360704 Msa0526480:CDS
ATGATTGGTGAAAATCTACC+AGG 0.579478 3_4:-80360159 None:intergenic
CTTACTTAAACTTATTCGTG+TGG 0.579768 3_4:+80361503 Msa0526480:CDS
GATTGCCCTAATATTCAAAG+AGG 0.580781 3_4:+80362116 Msa0526480:CDS
TATTCAGCTTGTATTTGTCA+GGG 0.581973 3_4:+80363261 Msa0526480:three_prime_UTR
CTGTTGCCAGGAGAGTGGTA+AGG 0.583623 3_4:-80362048 None:intergenic
AGGTTAGCAGAGTTACCGCT+AGG 0.584095 3_4:+80361856 Msa0526480:CDS
CTTGGAAGCGGCACCGTGGG+CGG 0.586200 3_4:+80361347 Msa0526480:CDS
CGAGGATTTCCTGAAAATGT+GGG 0.586794 3_4:+80361776 Msa0526480:CDS
AAGGCCAGGCGAGAGATGAA+AGG 0.586887 3_4:+80361546 Msa0526480:CDS
AAGGTAAAGATGAAAAGGCC+AGG 0.587709 3_4:+80361532 Msa0526480:CDS
AGGCCAGGCGAGAGATGAAA+GGG 0.588190 3_4:+80361547 Msa0526480:CDS
GTCATGACCCGAACCCGAAG+TGG 0.591055 3_4:-80360226 None:intergenic
GTTGCCAATGGATATGAAGA+GGG 0.593301 3_4:+80361462 Msa0526480:CDS
TACACCGTTCGTTACTCACC+TGG 0.594073 3_4:+80360141 Msa0526480:CDS
GATAGGCATATAATTGAGGA+TGG 0.598325 3_4:+80362005 Msa0526480:CDS
CAAAATCCCAAATATGACAA+GGG 0.598421 3_4:-80363213 None:intergenic
CCTGTGAGTGAAGGAGGCAA+AGG 0.599435 3_4:-80359852 None:intergenic
ATTTCCTGTTGCCAGGAGAG+TGG 0.604791 3_4:-80362053 None:intergenic
GAGTGTGTGAAATCCATGAT+TGG 0.608504 3_4:-80360174 None:intergenic
GAATCATTGAAATGATTACC+AGG 0.608972 3_4:-80360513 None:intergenic
ATTGCCCTAATATTCAAAGA+GGG 0.609062 3_4:+80362117 Msa0526480:CDS
ACAAGGGGTGTAAATATCAG+TGG 0.622170 3_4:-80363197 None:intergenic
AGGGCTTTCTGGAAGAGGAA+CGG 0.622207 3_4:+80362158 Msa0526480:CDS
TGCAATTGGATTTGATGCTG+GGG 0.622313 3_4:+80361305 Msa0526480:CDS
CTGTAGATAGAAGTCATCAC+AGG 0.622768 3_4:+80363377 Msa0526480:three_prime_UTR
AAAATCCCAAATATGACAAG+GGG 0.629526 3_4:-80363212 None:intergenic
CAGGCGAGAGATGAAAGGGT+TGG 0.630999 3_4:+80361551 Msa0526480:CDS
TGTGAACCTGTGAGTGAAGG+AGG 0.632301 3_4:-80359858 None:intergenic
AGTTGCCAATGGATATGAAG+AGG 0.632608 3_4:+80361461 Msa0526480:CDS
TCGGAAGGAGTCGTTATACT+CGG 0.634936 3_4:+80361614 Msa0526480:CDS
TGAAGAGGGGAATGATAACG+AGG 0.636725 3_4:+80361476 Msa0526480:CDS
TGGAAGAAAACACACTGCAG+TGG 0.636790 3_4:-80363303 None:intergenic
TCAAAATCCCAAATATGACA+AGG 0.640656 3_4:-80363214 None:intergenic
TCAAGTGTGCTCAACTGATG+CGG 0.641927 3_4:-80362216 None:intergenic
GTGTGTGAACCTGTGAGTGA+AGG 0.642358 3_4:-80359861 None:intergenic
TGTGATGACTTCTATCTACA+GGG 0.653438 3_4:-80363375 None:intergenic
GGTGTTTACTTCTCAAAACG+TGG 0.654701 3_4:+80361928 Msa0526480:CDS
GAAACGGCAGACTATATACA+TGG 0.655112 3_4:+80362263 Msa0526480:three_prime_UTR
TGGATGAGGAGAGCATCCAA+GGG 0.664506 3_4:+80361978 Msa0526480:CDS
AGTACTTGGAAGCGGCACCG+TGG 0.664859 3_4:+80361343 Msa0526480:CDS
TTGCCAATGGATATGAAGAG+GGG 0.674831 3_4:+80361463 Msa0526480:CDS
AGGCAAAGGTTAATAAATGG+CGG 0.682013 3_4:-80359838 None:intergenic
GATTGATAGACAGATTGCCG+AGG 0.682553 3_4:+80361758 Msa0526480:CDS
GGAGGATGAAGAAGACAAAG+TGG 0.683460 3_4:+80361368 Msa0526480:CDS
TCTACCAGGTGAGTAACGAA+CGG 0.692816 3_4:-80360145 None:intergenic
GTCTGCCGTTTCCTCCACCG+TGG 0.701509 3_4:-80362252 None:intergenic
CATTGGGTTGAGAAGACCGG+CGG 0.715075 3_4:-80360289 None:intergenic
CAACTCATACAACTATAGCG+TGG 0.730265 3_4:-80363166 None:intergenic
AATCCCAACAAACAACCTAG+CGG 0.767443 3_4:-80361871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTTTGTTTTTG+TGG + chr3_4:80360839-80360858 Msa0526480:intron 15.0%
!!! GTTTTTTTTTTTGTTTTTGT+GGG + chr3_4:80360840-80360859 Msa0526480:intron 15.0%
!!! TTTTTTTTTTTGTTTTTGTG+GGG + chr3_4:80360841-80360860 Msa0526480:intron 15.0%
!!! TTTGTTTAATTTGTTGTTTA+TGG + chr3_4:80360864-80360883 Msa0526480:intron 15.0%
!! TTCTATTTATCAAATTACTA+CGG + chr3_4:80361200-80361219 Msa0526480:intron 15.0%
!! TTGTAGACAATTATAGTTAT+AGG + chr3_4:80361044-80361063 Msa0526480:intron 20.0%
!! TCTATTTATCAAATTACTAC+GGG + chr3_4:80361201-80361220 Msa0526480:intron 20.0%
!!! TCTGTTTTTTGTTTTATCTT+AGG + chr3_4:80361275-80361294 Msa0526480:intron 20.0%
!!! TTTTGTTTTATCTTAGGTTT+CGG + chr3_4:80361281-80361300 Msa0526480:intron 20.0%
!!! AGATAATTTACATTGGATTT+TGG + chr3_4:80361728-80361747 Msa0526480:CDS 20.0%
!! TTAAATACTGATAATCATAG+AGG - chr3_4:80362331-80362350 None:intergenic 20.0%
!!! TTTTTTTCTTTTCATCCTTT+TGG + chr3_4:80363052-80363071 Msa0526480:intron 20.0%
!! AAAACAAAAGAATAGTCAAT+GGG - chr3_4:80363115-80363134 None:intergenic 20.0%
!! AAAAACAAAAGAATAGTCAA+TGG - chr3_4:80363116-80363135 None:intergenic 20.0%
!! ACTAGTTCATTAACATTAAA+CGG - chr3_4:80363456-80363475 None:intergenic 20.0%
!!! TTAAAATTTGGCACATTTTA+GGG - chr3_4:80363551-80363570 None:intergenic 20.0%
!!! ATTAAAATTTGGCACATTTT+AGG - chr3_4:80363552-80363571 None:intergenic 20.0%
!! CTGCTGAATTTATTAAAATT+TGG - chr3_4:80363563-80363582 None:intergenic 20.0%
! AAAACCTCTTAGATAGATAA+TGG + chr3_4:80359939-80359958 Msa0526480:exon 25.0%
! ATTTGTACGTTGTTGAATAT+CGG - chr3_4:80360376-80360395 None:intergenic 25.0%
! AGAAATTCGATTCATCATTA+GGG - chr3_4:80360472-80360491 None:intergenic 25.0%
!!! TAAAGTTTTGGGTATTTTGA+AGG + chr3_4:80360797-80360816 Msa0526480:CDS 25.0%
!!! TTTTGCTCTGTTTTATTAAC+TGG + chr3_4:80360956-80360975 Msa0526480:intron 25.0%
! TGGATTATAATGCAAATTGT+AGG + chr3_4:80360976-80360995 Msa0526480:intron 25.0%
! ATAATGCAAATTGTAGGATT+AGG + chr3_4:80360982-80361001 Msa0526480:intron 25.0%
! CAACCAAAATCATCATAAAA+GGG - chr3_4:80361960-80361979 None:intergenic 25.0%
!! TTGAAGATGATATTTTTCCA+CGG + chr3_4:80362235-80362254 Msa0526480:exon 25.0%
!!! CTTGTTATTTCCAACAAAAT+AGG - chr3_4:80362471-80362490 None:intergenic 25.0%
! GTGGAATATACTAATTTAGT+AGG - chr3_4:80363287-80363306 None:intergenic 25.0%
!! CTAATTGAATACTAGTTTGA+AGG + chr3_4:80363499-80363518 Msa0526480:three_prime_UTR 25.0%
TCTTCTTCACCAATTTCAAA+CGG + chr3_4:80360198-80360217 Msa0526480:CDS 30.0%
TTTGTACGTTGTTGAATATC+GGG - chr3_4:80360375-80360394 None:intergenic 30.0%
! AAGAAGTTGCATTGTTGATT+GGG - chr3_4:80360410-80360429 None:intergenic 30.0%
TCGATCTTGTGCAATAATTT+GGG - chr3_4:80360445-80360464 None:intergenic 30.0%
CAGAAATTCGATTCATCATT+AGG - chr3_4:80360473-80360492 None:intergenic 30.0%
GAATCATTGAAATGATTACC+AGG - chr3_4:80360516-80360535 None:intergenic 30.0%
!! TTTGAGGTTGATGTATTGTA+AGG + chr3_4:80360740-80360759 Msa0526480:CDS 30.0%
TGATGTATTGTAAGGATCTT+AGG + chr3_4:80360748-80360767 Msa0526480:CDS 30.0%
!!! AGAGGATGTTTCTAAAGTTT+TGG + chr3_4:80360785-80360804 Msa0526480:CDS 30.0%
!!! GAGGATGTTTCTAAAGTTTT+GGG + chr3_4:80360786-80360805 Msa0526480:CDS 30.0%
!! TTGATAATGTAGCATACTGT+AGG + chr3_4:80360913-80360932 Msa0526480:intron 30.0%
CTTACTTAAACTTATTCGTG+TGG + chr3_4:80361503-80361522 Msa0526480:CDS 30.0%
TCTTGAAGGTAAAGATGAAA+AGG + chr3_4:80361527-80361546 Msa0526480:CDS 30.0%
ATTCTTCTCAGAATGATCTT+CGG + chr3_4:80361595-80361614 Msa0526480:CDS 30.0%
GACAAGCAGATAATTTACAT+TGG + chr3_4:80361721-80361740 Msa0526480:CDS 30.0%
! ATTATCTGAAGCACATTCTA+AGG + chr3_4:80361812-80361831 Msa0526480:CDS 30.0%
! GTTCCCTTTTATGATGATTT+TGG + chr3_4:80361954-80361973 Msa0526480:CDS 30.0%
CCAACCAAAATCATCATAAA+AGG - chr3_4:80361961-80361980 None:intergenic 30.0%
!! CCTTTTATGATGATTTTGGT+TGG + chr3_4:80361958-80361977 Msa0526480:CDS 30.0%
TTTAATCGCTTCTTGAATTC+CGG + chr3_4:80362089-80362108 Msa0526480:CDS 30.0%
ATTGCCCTAATATTCAAAGA+GGG + chr3_4:80362117-80362136 Msa0526480:CDS 30.0%
CAAACCCTCTTTGAATATTA+GGG - chr3_4:80362124-80362143 None:intergenic 30.0%
TCAAACCCTCTTTGAATATT+AGG - chr3_4:80362125-80362144 None:intergenic 30.0%
TAATTCGTAATTGTCTTGTC+CGG - chr3_4:80362193-80362212 None:intergenic 30.0%
! CTAAAACTAGTTTCACACAA+AGG - chr3_4:80362394-80362413 None:intergenic 30.0%
! GTTATTTCCAACAAAATAGG+AGG - chr3_4:80362468-80362487 None:intergenic 30.0%
AATCACACAACAGATATGAA+GGG - chr3_4:80362520-80362539 None:intergenic 30.0%
AAATCACACAACAGATATGA+AGG - chr3_4:80362521-80362540 None:intergenic 30.0%
!!! GACAAGGGATTTATTTTGTT+GGG - chr3_4:80362636-80362655 None:intergenic 30.0%
!!! AGACAAGGGATTTATTTTGT+TGG - chr3_4:80362637-80362656 None:intergenic 30.0%
TAACATTCTAGTATCTCTCT+GGG - chr3_4:80362730-80362749 None:intergenic 30.0%
ATAACATTCTAGTATCTCTC+TGG - chr3_4:80362731-80362750 None:intergenic 30.0%
ACTTTCTTGTTACATTCTGT+TGG + chr3_4:80362779-80362798 Msa0526480:intron 30.0%
!!! AACCACCAATTATTTTTGCT+CGG + chr3_4:80362961-80362980 Msa0526480:intron 30.0%
AAAATCCCAAATATGACAAG+GGG - chr3_4:80363215-80363234 None:intergenic 30.0%
CAAAATCCCAAATATGACAA+GGG - chr3_4:80363216-80363235 None:intergenic 30.0%
TCAAAATCCCAAATATGACA+AGG - chr3_4:80363217-80363236 None:intergenic 30.0%
!! GTCATATTTGGGATTTTGAT+TGG + chr3_4:80363218-80363237 Msa0526480:three_prime_UTR 30.0%
TATTCAGCTTGTATTTGTCA+GGG + chr3_4:80363261-80363280 Msa0526480:three_prime_UTR 30.0%
GTTCATTAACATTAAACGGT+TGG - chr3_4:80363452-80363471 None:intergenic 30.0%
!! TTACAGGCTAATTTGCTTTA+TGG + chr3_4:80363599-80363618 Msa0526480:three_prime_UTR 30.0%
AGGCAAAGGTTAATAAATGG+CGG - chr3_4:80359841-80359860 None:intergenic 35.0%
AGGAGGCAAAGGTTAATAAA+TGG - chr3_4:80359844-80359863 None:intergenic 35.0%
GTTGCCATTATCTATCTAAG+AGG - chr3_4:80359946-80359965 None:intergenic 35.0%
!!! TGTTGTTGTTGTTGGTTTTG+AGG - chr3_4:80360015-80360034 None:intergenic 35.0%
ATGATTGGTGAAAATCTACC+AGG - chr3_4:80360162-80360181 None:intergenic 35.0%
! TGGTAGATTTTCACCAATCA+TGG + chr3_4:80360161-80360180 Msa0526480:CDS 35.0%
! TTGAATTTGGTGAAGCTTGA+AGG - chr3_4:80360258-80360277 None:intergenic 35.0%
GAAGAAGTTGCATTGTTGAT+TGG - chr3_4:80360411-80360430 None:intergenic 35.0%
CGATCTTGTGCAATAATTTG+GGG - chr3_4:80360444-80360463 None:intergenic 35.0%
CTCGATCTTGTGCAATAATT+TGG - chr3_4:80360446-80360465 None:intergenic 35.0%
AAGCGTAAGCTTAATATCAC+TGG - chr3_4:80360544-80360563 None:intergenic 35.0%
!! CTTACGCTTAGTTCTAAAGA+TGG + chr3_4:80360555-80360574 Msa0526480:CDS 35.0%
TCGGCAATTTCAACAAGATA+CGG - chr3_4:80360690-80360709 None:intergenic 35.0%
AACCTCAACATCATCACAAT+CGG - chr3_4:80360709-80360728 None:intergenic 35.0%
! TGATGATGTTGAGGTTTATG+TGG + chr3_4:80360713-80360732 Msa0526480:CDS 35.0%
TAGGAAGAAGCTTATGAAAG+AGG + chr3_4:80360767-80360786 Msa0526480:CDS 35.0%
! ACTCTTTTAATCCGAAGTGT+CGG - chr3_4:80361139-80361158 None:intergenic 35.0%
!! TTCGGATTAAAAGAGTGTCT+GGG + chr3_4:80361143-80361162 Msa0526480:intron 35.0%
ACAAATCCATGAATCAGACA+AGG - chr3_4:80361256-80361275 None:intergenic 35.0%
!! TTTGTCTTGTTTGGAGTACT+TGG + chr3_4:80361329-80361348 Msa0526480:CDS 35.0%
! CATTCTGAGAAGAATTCTCA+TGG - chr3_4:80361590-80361609 None:intergenic 35.0%
! TTGTTTGTTGGGATTGGAAA+GGG + chr3_4:80361879-80361898 Msa0526480:CDS 35.0%
!!! ATGATGATTTTGGTTGGATG+AGG + chr3_4:80361964-80361983 Msa0526480:CDS 35.0%
CCTCAATTATATGCCTATCA+AGG - chr3_4:80362004-80362023 None:intergenic 35.0%
CCTTGATAGGCATATAATTG+AGG + chr3_4:80362001-80362020 Msa0526480:CDS 35.0%
GATAGGCATATAATTGAGGA+TGG + chr3_4:80362005-80362024 Msa0526480:CDS 35.0%
! AACAGGAAATTTTGCTTGCT+TGG + chr3_4:80362066-80362085 Msa0526480:CDS 35.0%
AATATTAGGGCAATCTTCAC+CGG - chr3_4:80362111-80362130 None:intergenic 35.0%
GATTGCCCTAATATTCAAAG+AGG + chr3_4:80362116-80362135 Msa0526480:CDS 35.0%
! TTCAAAGAGGGTTTGAAGTT+TGG + chr3_4:80362129-80362148 Msa0526480:CDS 35.0%
! AAGATGATATTTTTCCACGG+TGG + chr3_4:80362238-80362257 Msa0526480:exon 35.0%
ACGATCATGAGAAGGTTAAA+AGG - chr3_4:80362296-80362315 None:intergenic 35.0%
ATATAGAGACGATCATGAGA+AGG - chr3_4:80362304-80362323 None:intergenic 35.0%
AAATAGTGTCATCTTCTTCC+AGG - chr3_4:80362438-80362457 None:intergenic 35.0%
! ATTGTCACCTCCTATTTTGT+TGG + chr3_4:80362458-80362477 Msa0526480:intron 35.0%
GGATTGTACTCTTGATAAGA+AGG + chr3_4:80362585-80362604 Msa0526480:intron 35.0%
GTACTCTTGATAAGAAGGAA+CGG + chr3_4:80362590-80362609 Msa0526480:intron 35.0%
TACTCTTGATAAGAAGGAAC+GGG + chr3_4:80362591-80362610 Msa0526480:intron 35.0%
ATAAGAAGGAACGGGTAAAA+GGG + chr3_4:80362599-80362618 Msa0526480:intron 35.0%
CAGTCTCATTGATAAGACAA+GGG - chr3_4:80362651-80362670 None:intergenic 35.0%
TATCTTGCTACAACATGCAT+GGG - chr3_4:80362684-80362703 None:intergenic 35.0%
TTATCTTGCTACAACATGCA+TGG - chr3_4:80362685-80362704 None:intergenic 35.0%
! TGTTACATTCTGTTGGTAAG+TGG + chr3_4:80362786-80362805 Msa0526480:intron 35.0%
TAAACATCCTGGCATACTAA+AGG - chr3_4:80362830-80362849 None:intergenic 35.0%
!!! ACCACCAATTATTTTTGCTC+GGG + chr3_4:80362962-80362981 Msa0526480:intron 35.0%
AATGGGATGACAATATTGGT+CGG - chr3_4:80363098-80363117 None:intergenic 35.0%
AGTCAATGGGATGACAATAT+TGG - chr3_4:80363102-80363121 None:intergenic 35.0%
! TTTTTGTCTCTCTCTTATGC+AGG + chr3_4:80363132-80363151 Msa0526480:intron 35.0%
TACAACTATAGCGTGGTATA+CGG - chr3_4:80363162-80363181 None:intergenic 35.0%
TTTACACCCCTTGTCATATT+TGG + chr3_4:80363206-80363225 Msa0526480:three_prime_UTR 35.0%
TTACACCCCTTGTCATATTT+GGG + chr3_4:80363207-80363226 Msa0526480:three_prime_UTR 35.0%
CTATTCAGCTTGTATTTGTC+AGG + chr3_4:80363260-80363279 Msa0526480:three_prime_UTR 35.0%
CCAGGAAAATATCTTTGTTG+CGG + chr3_4:80363323-80363342 Msa0526480:three_prime_UTR 35.0%
TGTGATGACTTCTATCTACA+GGG - chr3_4:80363378-80363397 None:intergenic 35.0%
!! TTAGGGAATTCTAAAGTCGA+AGG - chr3_4:80363534-80363553 None:intergenic 35.0%
!!! AAGCAGTTGTTGTCGTTTTG+TGG - chr3_4:80359919-80359938 None:intergenic 40.0%
!!! TTGGTTTTGAGGTTTGAGGA+GGG - chr3_4:80360004-80360023 None:intergenic 40.0%
!!! GTTGTTGGTTTTGAGGTTTG+AGG - chr3_4:80360008-80360027 None:intergenic 40.0%
! TGGGTTGTTGTTGTTGTTGT+TGG - chr3_4:80360023-80360042 None:intergenic 40.0%
TGAATCGGGTAATTGAGGTT+CGG - chr3_4:80360112-80360131 None:intergenic 40.0%
GTGTAAGTAGAAGGTGAATC+GGG - chr3_4:80360126-80360145 None:intergenic 40.0%
GGTGTAAGTAGAAGGTGAAT+CGG - chr3_4:80360127-80360146 None:intergenic 40.0%
TAACGAACGGTGTAAGTAGA+AGG - chr3_4:80360135-80360154 None:intergenic 40.0%
GAGTGTGTGAAATCCATGAT+TGG - chr3_4:80360177-80360196 None:intergenic 40.0%
! GTGGAATGTCCGTTTGAAAT+TGG - chr3_4:80360210-80360229 None:intergenic 40.0%
TTCAAACGGACATTCCACTT+CGG + chr3_4:80360212-80360231 Msa0526480:CDS 40.0%
TGGTGAAGCTTGAAGGAAAA+GGG - chr3_4:80360251-80360270 None:intergenic 40.0%
TTGGTGAAGCTTGAAGGAAA+AGG - chr3_4:80360252-80360271 None:intergenic 40.0%
CTATTATCTTCACGTAGTCC+TGG + chr3_4:80360495-80360514 Msa0526480:CDS 40.0%
TTTCCGTGAAGCTTTCTGAT+CGG + chr3_4:80360634-80360653 Msa0526480:CDS 40.0%
AGGTTTATGTGGAGACTTTG+AGG + chr3_4:80360724-80360743 Msa0526480:CDS 40.0%
!! CTTCGGATTAAAAGAGTGTC+TGG + chr3_4:80361142-80361161 Msa0526480:intron 40.0%
CTGCAATTGGATTTGATGCT+GGG + chr3_4:80361304-80361323 Msa0526480:CDS 40.0%
TGCAATTGGATTTGATGCTG+GGG + chr3_4:80361305-80361324 Msa0526480:CDS 40.0%
! TTGTTTGGAGTACTTGGAAG+CGG + chr3_4:80361335-80361354 Msa0526480:CDS 40.0%
ATTCAAGACGAAGTTCAGAC+AGG - chr3_4:80361401-80361420 None:intergenic 40.0%
GAACTTCGTCTTGAATCTGT+TGG + chr3_4:80361405-80361424 Msa0526480:CDS 40.0%
ATATCCATTGGCAACTTCAG+TGG - chr3_4:80361457-80361476 None:intergenic 40.0%
AGTTGCCAATGGATATGAAG+AGG + chr3_4:80361461-80361480 Msa0526480:CDS 40.0%
GTTGCCAATGGATATGAAGA+GGG + chr3_4:80361462-80361481 Msa0526480:CDS 40.0%
TTGCCAATGGATATGAAGAG+GGG + chr3_4:80361463-80361482 Msa0526480:CDS 40.0%
ATTCCCCTCTTCATATCCAT+TGG - chr3_4:80361469-80361488 None:intergenic 40.0%
CTTATTCGTGTGGTTCTTGA+AGG + chr3_4:80361513-80361532 Msa0526480:CDS 40.0%
AAGGTAAAGATGAAAAGGCC+AGG + chr3_4:80361532-80361551 Msa0526480:CDS 40.0%
TTCTCAGAATGATCTTCGGA+AGG + chr3_4:80361599-80361618 Msa0526480:CDS 40.0%
!!! TACTTCGTCACCACTTTTTG+CGG + chr3_4:80361658-80361677 Msa0526480:CDS 40.0%
! CAATTTGACTTACATCCTGC+AGG - chr3_4:80361698-80361717 None:intergenic 40.0%
!! CCACATTTTCAGGAAATCCT+CGG - chr3_4:80361778-80361797 None:intergenic 40.0%
CGAGGATTTCCTGAAAATGT+GGG + chr3_4:80361776-80361795 Msa0526480:CDS 40.0%
! ATTCAGATGCCCACATTTTC+AGG - chr3_4:80361788-80361807 None:intergenic 40.0%
TTACCGCTAGGTTGTTTGTT+GGG + chr3_4:80361868-80361887 Msa0526480:CDS 40.0%
AATCCCAACAAACAACCTAG+CGG - chr3_4:80361874-80361893 None:intergenic 40.0%
! GTTGTTTGTTGGGATTGGAA+AGG + chr3_4:80361878-80361897 Msa0526480:CDS 40.0%
!! ACAGTTGTTGGCTTCTAAAG+AGG + chr3_4:80361902-80361921 Msa0526480:CDS 40.0%
GGTGTTTACTTCTCAAAACG+TGG + chr3_4:80361928-80361947 Msa0526480:CDS 40.0%
AAGCAAAATTTCCTGTTGCC+AGG - chr3_4:80362063-80362082 None:intergenic 40.0%
! AAAGAGGGTTTGAAGTTTGG+TGG + chr3_4:80362132-80362151 Msa0526480:CDS 40.0%
! GTTTGAAGTTTGGTGGAGAA+GGG + chr3_4:80362139-80362158 Msa0526480:CDS 40.0%
! ATGATATTTTTCCACGGTGG+AGG + chr3_4:80362241-80362260 Msa0526480:three_prime_UTR 40.0%
GAAACGGCAGACTATATACA+TGG + chr3_4:80362263-80362282 Msa0526480:three_prime_UTR 40.0%
TTAAGCCTTCTGTCAAACTC+TGG + chr3_4:80362347-80362366 Msa0526480:intron 40.0%
TTCTACCAGAGTTTGACAGA+AGG - chr3_4:80362355-80362374 None:intergenic 40.0%
CTGTTGTGTGATTTACACCT+AGG + chr3_4:80362527-80362546 Msa0526480:intron 40.0%
! ACCTAGGCTGATCATGATTT+TGG + chr3_4:80362543-80362562 Msa0526480:intron 40.0%
TCCAAAATCATGATCAGCCT+AGG - chr3_4:80362547-80362566 None:intergenic 40.0%
GATAAGAAGGAACGGGTAAA+AGG + chr3_4:80362598-80362617 Msa0526480:intron 40.0%
GCAGTCTCATTGATAAGACA+AGG - chr3_4:80362652-80362671 None:intergenic 40.0%
GTCTTATCAATGAGACTGCT+TGG + chr3_4:80362653-80362672 Msa0526480:intron 40.0%
ATCTTGCTACAACATGCATG+GGG - chr3_4:80362683-80362702 None:intergenic 40.0%
ACATCGTCAACTAAACATCC+TGG - chr3_4:80362841-80362860 None:intergenic 40.0%
! ACCACCAAAATTTTCGTGCT+CGG + chr3_4:80362887-80362906 Msa0526480:intron 40.0%
ACCCGAGCAAAAATAATTGG+TGG - chr3_4:80362966-80362985 None:intergenic 40.0%
CAGACCCGAGCAAAAATAAT+TGG - chr3_4:80362969-80362988 None:intergenic 40.0%
TCACAAACTTGCACTCCAAA+AGG - chr3_4:80363070-80363089 None:intergenic 40.0%
CAACTCATACAACTATAGCG+TGG - chr3_4:80363169-80363188 None:intergenic 40.0%
! ACAAGGGGTGTAAATATCAG+TGG - chr3_4:80363200-80363219 None:intergenic 40.0%
! CCGCAACAAAGATATTTTCC+TGG - chr3_4:80363326-80363345 None:intergenic 40.0%
GTTGCGGTCAAACTAATTTC+TGG + chr3_4:80363339-80363358 Msa0526480:three_prime_UTR 40.0%
CTGTGATGACTTCTATCTAC+AGG - chr3_4:80363379-80363398 None:intergenic 40.0%
CTGTAGATAGAAGTCATCAC+AGG + chr3_4:80363377-80363396 Msa0526480:three_prime_UTR 40.0%
TAAATTCAGCAGCTCTGTAC+AGG + chr3_4:80363571-80363590 Msa0526480:three_prime_UTR 40.0%
CACACACTCTCTCTATTCCT+TGG + chr3_4:80359889-80359908 Msa0526480:five_prime_UTR 45.0%
!!! TGTCGTTTTGTGGTTCACCA+AGG - chr3_4:80359909-80359928 None:intergenic 45.0%
TTGAGGTTTGAGGAGGGAAT+TGG - chr3_4:80359998-80360017 None:intergenic 45.0%
!!! GTTGGTTTTGAGGTTTGAGG+AGG - chr3_4:80360005-80360024 None:intergenic 45.0%
!! CGTCGTTTAGGTTTGGTGAT+GGG - chr3_4:80360042-80360061 None:intergenic 45.0%
! ACACTTGCGTCGTTTAGGTT+TGG - chr3_4:80360049-80360068 None:intergenic 45.0%
TGTTGCGGAAGTGGATATTG+TGG - chr3_4:80360079-80360098 None:intergenic 45.0%
GAATCGGGTAATTGAGGTTC+GGG - chr3_4:80360111-80360130 None:intergenic 45.0%
GAAGGTGAATCGGGTAATTG+AGG - chr3_4:80360117-80360136 None:intergenic 45.0%
TCTACCAGGTGAGTAACGAA+CGG - chr3_4:80360148-80360167 None:intergenic 45.0%
TCAAACGGACATTCCACTTC+GGG + chr3_4:80360213-80360232 Msa0526480:CDS 45.0%
GGTGAGTGCAGAGTTGAATT+TGG - chr3_4:80360271-80360290 None:intergenic 45.0%
TCCAACGCTCTTCGAAATGA+TGG + chr3_4:80360341-80360360 Msa0526480:CDS 45.0%
! ACCATCATTTCGAAGAGCGT+TGG - chr3_4:80360345-80360364 None:intergenic 45.0%
! TGCCGATTGTGATGATGTTG+AGG + chr3_4:80360704-80360723 Msa0526480:CDS 45.0%
! CGGTGATACATAGGCTTTGA+CGG - chr3_4:80361119-80361138 None:intergenic 45.0%
CCTATGTATCACCGACACTT+CGG + chr3_4:80361125-80361144 Msa0526480:intron 45.0%
ACGTAACCAACCATACGTCT+CGG - chr3_4:80361172-80361191 None:intergenic 45.0%
! AAATTACTACGGGTGTTGCG+TGG + chr3_4:80361211-80361230 Msa0526480:intron 45.0%
TGGTGTCCTTGTCTGATTCA+TGG + chr3_4:80361247-80361266 Msa0526480:intron 45.0%
TCTTAGGTTTCGGCTGCAAT+TGG + chr3_4:80361291-80361310 Msa0526480:intron 45.0%
GCTGCAATTGGATTTGATGC+TGG + chr3_4:80361303-80361322 Msa0526480:CDS 45.0%
!! TGCTGGGGTTTTGTCTTGTT+TGG + chr3_4:80361320-80361339 Msa0526480:CDS 45.0%
GGAGGATGAAGAAGACAAAG+TGG + chr3_4:80361368-80361387 Msa0526480:CDS 45.0%
TCTTGAATCTGTTGGAGCTG+TGG + chr3_4:80361413-80361432 Msa0526480:CDS 45.0%
!!! AGCTGTGGAGGTTTTGAAGA+GGG + chr3_4:80361428-80361447 Msa0526480:CDS 45.0%
GTTTCCACTGAAGTTGCCAA+TGG + chr3_4:80361450-80361469 Msa0526480:CDS 45.0%
! TGAAGAGGGGAATGATAACG+AGG + chr3_4:80361476-80361495 Msa0526480:CDS 45.0%
TCGGAAGGAGTCGTTATACT+CGG + chr3_4:80361614-80361633 Msa0526480:CDS 45.0%
!!! ACTTCGTCACCACTTTTTGC+GGG + chr3_4:80361659-80361678 Msa0526480:CDS 45.0%
GATTGATAGACAGATTGCCG+AGG + chr3_4:80361758-80361777 Msa0526480:CDS 45.0%
CCGAGGATTTCCTGAAAATG+TGG + chr3_4:80361775-80361794 Msa0526480:CDS 45.0%
GTTACCGCTAGGTTGTTTGT+TGG + chr3_4:80361867-80361886 Msa0526480:CDS 45.0%
! GCTAGGTTGTTTGTTGGGAT+TGG + chr3_4:80361873-80361892 Msa0526480:CDS 45.0%
GATTGGAAAGGGACAGTTGT+TGG + chr3_4:80361890-80361909 Msa0526480:CDS 45.0%
!! TGTTGGCTTCTAAAGAGGCT+AGG + chr3_4:80361907-80361926 Msa0526480:CDS 45.0%
TATATGCCTATCAAGGCCCT+TGG - chr3_4:80361997-80362016 None:intergenic 45.0%
! GGTTTGAAGTTTGGTGGAGA+AGG + chr3_4:80362138-80362157 Msa0526480:CDS 45.0%
TCAAGTGTGCTCAACTGATG+CGG - chr3_4:80362219-80362238 None:intergenic 45.0%
! TTTTTCCACGGTGGAGGAAA+CGG + chr3_4:80362247-80362266 Msa0526480:three_prime_UTR 45.0%
CAATGTCTTCATGCTTTGCC+TGG + chr3_4:80362417-80362436 Msa0526480:intron 45.0%
GGACTCTCTTGTCAGTTGAA+TGG + chr3_4:80362564-80362583 Msa0526480:intron 45.0%
AGTCACACCTTTAGTATGCC+AGG + chr3_4:80362820-80362839 Msa0526480:intron 45.0%
! CCACCAAAATTTTCGTGCTC+GGG + chr3_4:80362888-80362907 Msa0526480:intron 45.0%
! AGACCCGAGCACGAAAATTT+TGG - chr3_4:80362894-80362913 None:intergenic 45.0%
TGGAAGAAAACACACTGCAG+TGG - chr3_4:80363306-80363325 None:intergenic 45.0%
! ACTGCAGTGTGTTTTCTTCC+AGG + chr3_4:80363305-80363324 Msa0526480:three_prime_UTR 45.0%
CTCTGTACAGGTCTCATTAC+AGG + chr3_4:80363583-80363602 Msa0526480:three_prime_UTR 45.0%
TGTGAACCTGTGAGTGAAGG+AGG - chr3_4:80359861-80359880 None:intergenic 50.0%
GTGTGTGAACCTGTGAGTGA+AGG - chr3_4:80359864-80359883 None:intergenic 50.0%
!! GCGTCGTTTAGGTTTGGTGA+TGG - chr3_4:80360043-80360062 None:intergenic 50.0%
TCACGACACTTGCGTCGTTT+AGG - chr3_4:80360054-80360073 None:intergenic 50.0%
! GGTAATTGAGGTTCGGGTTC+GGG - chr3_4:80360105-80360124 None:intergenic 50.0%
! GGGTAATTGAGGTTCGGGTT+CGG - chr3_4:80360106-80360125 None:intergenic 50.0%
TACACCGTTCGTTACTCACC+TGG + chr3_4:80360141-80360160 Msa0526480:CDS 50.0%
!! CGACATTGGGTTGAGAAGAC+CGG - chr3_4:80360295-80360314 None:intergenic 50.0%
!! GGACTTGATCGGGTTTTGTC+CGG - chr3_4:80360324-80360343 None:intergenic 50.0%
!! GAAGAGCGTTGGACTTGATC+GGG - chr3_4:80360334-80360353 None:intergenic 50.0%
!! CGAAGAGCGTTGGACTTGAT+CGG - chr3_4:80360335-80360354 None:intergenic 50.0%
CCACCGATCAGAAAGCTTCA+CGG - chr3_4:80360640-80360659 None:intergenic 50.0%
!! CCGAAGTGTCGGTGATACAT+AGG - chr3_4:80361128-80361147 None:intergenic 50.0%
TGAATCTGTTGGAGCTGTGG+AGG + chr3_4:80361416-80361435 Msa0526480:CDS 50.0%
!!! GAGCTGTGGAGGTTTTGAAG+AGG + chr3_4:80361427-80361446 Msa0526480:CDS 50.0%
ACCTCAAACCTGTGAACTGC+AGG - chr3_4:80361840-80361859 None:intergenic 50.0%
AGGTTAGCAGAGTTACCGCT+AGG + chr3_4:80361856-80361875 Msa0526480:CDS 50.0%
!! TTGGATGAGGAGAGCATCCA+AGG + chr3_4:80361977-80361996 Msa0526480:CDS 50.0%
!! TGGATGAGGAGAGCATCCAA+GGG + chr3_4:80361978-80361997 Msa0526480:CDS 50.0%
TTCTCACCTTACCACTCTCC+TGG + chr3_4:80362042-80362061 Msa0526480:CDS 50.0%
ATTTCCTGTTGCCAGGAGAG+TGG - chr3_4:80362056-80362075 None:intergenic 50.0%
TTTGGTGGAGAAGGGCTTTC+TGG + chr3_4:80362147-80362166 Msa0526480:CDS 50.0%
! AGGGCTTTCTGGAAGAGGAA+CGG + chr3_4:80362158-80362177 Msa0526480:CDS 50.0%
! CCCGAGCACGAAAATTTTGG+TGG - chr3_4:80362891-80362910 None:intergenic 50.0%
CCTGTGAGTGAAGGAGGCAA+AGG - chr3_4:80359855-80359874 None:intergenic 55.0%
CCTTTGCCTCCTTCACTCAC+AGG + chr3_4:80359852-80359871 Msa0526480:five_prime_UTR 55.0%
!! TTCGGGTTGTGTTGCGGAAG+TGG - chr3_4:80360088-80360107 None:intergenic 55.0%
!! TTCGGGTTCGGGTTGTGTTG+CGG - chr3_4:80360094-80360113 None:intergenic 55.0%
! CGGACATTCCACTTCGGGTT+CGG + chr3_4:80360218-80360237 Msa0526480:CDS 55.0%
! GGACATTCCACTTCGGGTTC+GGG + chr3_4:80360219-80360238 Msa0526480:CDS 55.0%
TTCAACTCTGCACTCACCGC+CGG + chr3_4:80360273-80360292 Msa0526480:CDS 55.0%
!! CATTGGGTTGAGAAGACCGG+CGG - chr3_4:80360292-80360311 None:intergenic 55.0%
!! CTTGATCGGGTTTTGTCCGG+CGG - chr3_4:80360321-80360340 None:intergenic 55.0%
CCGTGAAGCTTTCTGATCGG+TGG + chr3_4:80360637-80360656 Msa0526480:CDS 55.0%
GACGCAGAGTCAACAGCGTT+CGG + chr3_4:80360659-80360678 Msa0526480:CDS 55.0%
TGCGTGGCTGTGTTTGTGTC+TGG + chr3_4:80361227-80361246 Msa0526480:intron 55.0%
TCTTCTTCATCCTCCGCCCA+CGG - chr3_4:80361363-80361382 None:intergenic 55.0%
AAGGCCAGGCGAGAGATGAA+AGG + chr3_4:80361546-80361565 Msa0526480:CDS 55.0%
AGGCCAGGCGAGAGATGAAA+GGG + chr3_4:80361547-80361566 Msa0526480:CDS 55.0%
CAACCCTTTCATCTCTCGCC+TGG - chr3_4:80361553-80361572 None:intergenic 55.0%
CAGGCGAGAGATGAAAGGGT+TGG + chr3_4:80361551-80361570 Msa0526480:CDS 55.0%
!!! TCACCACTTTTTGCGGGCTG+CGG + chr3_4:80361665-80361684 Msa0526480:CDS 55.0%
AATCCGCAGCCCGCAAAAAG+TGG - chr3_4:80361671-80361690 None:intergenic 55.0%
! CTAAGGTGCCTGCAGTTCAC+AGG + chr3_4:80361829-80361848 Msa0526480:CDS 55.0%
GCCTGCAGTTCACAGGTTTG+AGG + chr3_4:80361836-80361855 Msa0526480:CDS 55.0%
GAGCATCCAAGGGCCTTGAT+AGG + chr3_4:80361988-80362007 Msa0526480:CDS 55.0%
CTGTTGCCAGGAGAGTGGTA+AGG - chr3_4:80362051-80362070 None:intergenic 55.0%
CTTACCACTCTCCTGGCAAC+AGG + chr3_4:80362049-80362068 Msa0526480:CDS 55.0%
! GGAGAAGGGCTTTCTGGAAG+AGG + chr3_4:80362153-80362172 Msa0526480:CDS 55.0%
AGAGGAACGGAGAGCAAGAC+CGG + chr3_4:80362171-80362190 Msa0526480:CDS 55.0%
GTCATGACCCGAACCCGAAG+TGG - chr3_4:80360229-80360248 None:intergenic 60.0%
! GTCTGGGACACCGAGACGTA+TGG + chr3_4:80361159-80361178 Msa0526480:intron 60.0%
GGGACACCGAGACGTATGGT+TGG + chr3_4:80361163-80361182 Msa0526480:intron 60.0%
AGTACTTGGAAGCGGCACCG+TGG + chr3_4:80361343-80361362 Msa0526480:CDS 60.0%
GTACTTGGAAGCGGCACCGT+GGG + chr3_4:80361344-80361363 Msa0526480:CDS 60.0%
!! GATCGGGTTTTGTCCGGCGG+CGG - chr3_4:80360318-80360337 None:intergenic 65.0%
GGCTGCGGATTCAGACCTGC+AGG + chr3_4:80361680-80361699 Msa0526480:CDS 65.0%
! GTCTGCCGTTTCCTCCACCG+TGG - chr3_4:80362255-80362274 None:intergenic 65.0%
CAACCCAATGTCGCCGCCGC+CGG + chr3_4:80360302-80360321 Msa0526480:CDS 70.0%
TGTCCGGCGGCGGCGACATT+GGG - chr3_4:80360308-80360327 None:intergenic 70.0%
TTGTCCGGCGGCGGCGACAT+TGG - chr3_4:80360309-80360328 None:intergenic 70.0%
CTTGGAAGCGGCACCGTGGG+CGG + chr3_4:80361347-80361366 Msa0526480:CDS 70.0%
! GGAAGCGGCACCGTGGGCGG+AGG + chr3_4:80361350-80361369 Msa0526480:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 80359821 80363648 80359821 ID=Msa0526480;Name=Msa0526480
chr3_4 mRNA 80359821 80363648 80359821 ID=Msa0526480-mRNA-1;Parent=Msa0526480;Name=Msa0526480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=137|1|1|1|0.5|0.33|3|541|600
chr3_4 exon 80359821 80360818 80359821 ID=Msa0526480-mRNA-1:exon:24139;Parent=Msa0526480-mRNA-1
chr3_4 exon 80361297 80362284 80361297 ID=Msa0526480-mRNA-1:exon:24140;Parent=Msa0526480-mRNA-1
chr3_4 exon 80363154 80363648 80363154 ID=Msa0526480-mRNA-1:exon:24141;Parent=Msa0526480-mRNA-1
chr3_4 five_prime_UTR 80359821 80359957 80359821 ID=Msa0526480-mRNA-1:five_prime_utr;Parent=Msa0526480-mRNA-1
chr3_4 CDS 80359958 80360818 80359958 ID=Msa0526480-mRNA-1:cds;Parent=Msa0526480-mRNA-1
chr3_4 CDS 80361297 80362238 80361297 ID=Msa0526480-mRNA-1:cds;Parent=Msa0526480-mRNA-1
chr3_4 three_prime_UTR 80362239 80362284 80362239 ID=Msa0526480-mRNA-1:three_prime_utr;Parent=Msa0526480-mRNA-1
chr3_4 three_prime_UTR 80363154 80363648 80363154 ID=Msa0526480-mRNA-1:three_prime_utr;Parent=Msa0526480-mRNA-1
Gene Sequence

>Msa0526480

ATGGCAACGACAACTACAACAACTAAAACAACAATAACCAATTCCCTCCTCAAACCTCAAAACCAACAACAACAACAACAACCCATCACCAAACCTAAACGACGCAAGTGTCGTGAAACCACAATATCCACTTCCGCAACACAACCCGAACCCGAACCTCAATTACCCGATTCACCTTCTACTTACACCGTTCGTTACTCACCTGGTAGATTTTCACCAATCATGGATTTCACACACTCTTCTTCTTCACCAATTTCAAACGGACATTCCACTTCGGGTTCGGGTCATGACCCTTTTCCTTCAAGCTTCACCAAATTCAACTCTGCACTCACCGCCGGTCTTCTCAACCCAATGTCGCCGCCGCCGGACAAAACCCGATCAAGTCCAACGCTCTTCGAAATGATGGTCAACGAACCCGATATTCAACAACGTACAAATCATAATCAGATCCCAATCAACAATGCAACTTCTTCAATGCAAAAACCCCAAATTATTGCACAAGATCGAGAAACCCTAATGATGAATCGAATTTCTGAACTATTATCTTCACGTAGTCCTGGTAATCATTTCAATGATTCATCTTCCAGTGATATTAAGCTTACGCTTAGTTCTAAAGATGGATTTAGTGTTTCTATGAATGTGCATCGTCAGATTCTTGTTGCGCATAGTAGATTTTTTTCCGTGAAGCTTTCTGATCGGTGGACGCAGAGTCAACAGCGTTCGGCGTTGCCGTATCTTGTTGAAATTGCCGATTGTGATGATGTTGAGGTTTATGTGGAGACTTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTTATGAAAGAGGATGTTTCTAAAGTTTTGGGTATTTTGAAGGTTTCGGCTGCAATTGGATTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCACCGTGGGCGGAGGATGAAGAAGACAAAGTGGCGTCGCTCCTGTCTGAACTTCGTCTTGAATCTGTTGGAGCTGTGGAGGTTTTGAAGAGGGTTTCCACTGAAGTTGCCAATGGATATGAAGAGGGGAATGATAACGAGGAAGTCTTACTTAAACTTATTCGTGTGGTTCTTGAAGGTAAAGATGAAAAGGCCAGGCGAGAGATGAAAGGGTTGGTGTCGAAGATGCTCCATGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGTTATACTCGGCATGTGATGATTGTCTGCAATTACTTCGTCACCACTTTTTGCGGGCTGCGGATTCAGACCTGCAGGATGTAAGTCAAATTGCACGACAAGCAGATAATTTACATTGGATTTTGGATATTTTGATTGATAGACAGATTGCCGAGGATTTCCTGAAAATGTGGGCATCTGAATCAGAATTATCTGAAGCACATTCTAAGGTGCCTGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACCGCTAGGTTGTTTGTTGGGATTGGAAAGGGACAGTTGTTGGCTTCTAAAGAGGCTAGGTGTTTACTTCTCAAAACGTGGCTTGTTCCCTTTTATGATGATTTTGGTTGGATGAGGAGAGCATCCAAGGGCCTTGATAGGCATATAATTGAGGATGGTCTTAGTAACACAATTCTCACCTTACCACTCTCCTGGCAACAGGAAATTTTGCTTGCTTGGTTTAATCGCTTCTTGAATTCCGGTGAAGATTGCCCTAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAACGGAGAGCAAGACCGGACAAGACAATTACGAATTACATCCGCATCAGTTGAGCACACTTGA
Protein sequence

>Msa0526480

MATTTTTTKTTITNSLLKPQNQQQQQQPITKPKRRKCRETTISTSATQPEPEPQLPDSPSTYTVRYSPGRFSPIMDFTHSSSSPISNGHSTSGSGHDPFPSSFTKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMVNEPDIQQRTNHNQIPINNATSSMQKPQIIAQDRETLMMNRISELLSSRSPGNHFNDSSSSDIKLTLSSKDGFSVSMNVHRQILVAHSRFFSVKLSDRWTQSQQRSALPYLVEIADCDDVEVYVETLRLMYCKDLRKKLMKEDVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEDKVASLLSELRLESVGAVEVLKRVSTEVANGYEEGNDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYSACDDCLQLLRHHFLRAADSDLQDVSQIARQADNLHWILDILIDRQIAEDFLKMWASESELSEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKEARCLLLKTWLVPFYDDFGWMRRASKGLDRHIIEDGLSNTILTLPLSWQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQDRTRQLRITSASVEHT*