Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660570 | PNY02552.1 | 62.940 | 483 | 123 | 7 | 221 | 702 | 268 | 695 | 0.0 | 572 |
| Msa0660570 | PNY02552.1 | 76.786 | 56 | 13 | 0 | 154 | 209 | 1 | 56 | 8.88e-17 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660570 | sp|Q9SZL8|FRS5_ARATH | 34.545 | 220 | 134 | 6 | 2 | 212 | 32 | 250 | 2.76e-22 | 105 |
| Msa0660570 | sp|Q9SZL8|FRS5_ARATH | 28.814 | 177 | 125 | 1 | 221 | 397 | 463 | 638 | 5.69e-19 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0660570 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660570 | Msa1392370 | 0.825170 | 5.424902e-54 | -8.615850e-47 |
| Msa0249730 | Msa0660570 | 0.856824 | 2.476625e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660570 | MtrunA17_Chr2g0287651 | 32.890 | 301 | 200 | 1 | 220 | 520 | 459 | 757 | 3.48e-44 | 171 |
| Msa0660570 | MtrunA17_Chr2g0287651 | 41.711 | 187 | 104 | 1 | 29 | 210 | 63 | 249 | 4.02e-40 | 158 |
| Msa0660570 | MtrunA17_Chr1g0203051 | 29.858 | 211 | 135 | 5 | 1 | 198 | 31 | 241 | 1.38e-23 | 106 |
| Msa0660570 | MtrunA17_Chr1g0203051 | 31.677 | 161 | 110 | 0 | 220 | 380 | 461 | 621 | 7.39e-20 | 94.4 |
| Msa0660570 | MtrunA17_Chr2g0308841 | 29.121 | 182 | 128 | 1 | 217 | 397 | 50 | 231 | 2.43e-22 | 97.4 |
| Msa0660570 | MtrunA17_Chr5g0448761 | 36.364 | 176 | 105 | 3 | 44 | 212 | 63 | 238 | 3.25e-22 | 102 |
| Msa0660570 | MtrunA17_Chr5g0448761 | 29.714 | 175 | 122 | 1 | 221 | 395 | 454 | 627 | 2.67e-20 | 96.3 |
| Msa0660570 | MtrunA17_Chr6g0477261 | 28.674 | 279 | 185 | 6 | 221 | 487 | 268 | 544 | 5.78e-19 | 91.7 |
| Msa0660570 | MtrunA17_Chr2g0296781 | 29.496 | 278 | 182 | 6 | 221 | 486 | 379 | 654 | 6.48e-19 | 91.7 |
| Msa0660570 | MtrunA17_Chr3g0118611 | 26.667 | 270 | 182 | 4 | 194 | 461 | 314 | 569 | 1.89e-18 | 90.1 |
| Msa0660570 | MtrunA17_Chr7g0258861 | 32.298 | 161 | 104 | 2 | 44 | 200 | 13 | 172 | 2.25e-18 | 86.7 |
| Msa0660570 | MtrunA17_Chr2g0324011 | 31.056 | 161 | 105 | 2 | 44 | 200 | 13 | 171 | 1.34e-17 | 87.0 |
| Msa0660570 | MtrunA17_Chr2g0324011 | 24.873 | 197 | 141 | 2 | 213 | 406 | 389 | 581 | 1.43e-12 | 70.9 |
| Msa0660570 | MtrunA17_Chr5g0448511 | 24.790 | 238 | 169 | 4 | 232 | 468 | 237 | 465 | 1.77e-17 | 86.3 |
| Msa0660570 | MtrunA17_Chr7g0238821 | 36.111 | 108 | 63 | 2 | 45 | 148 | 1 | 106 | 2.35e-15 | 72.8 |
| Msa0660570 | MtrunA17_Chr1g0202341 | 32.143 | 196 | 121 | 6 | 40 | 228 | 50 | 240 | 3.10e-15 | 79.7 |
| Msa0660570 | MtrunA17_Chr1g0202341 | 26.630 | 184 | 133 | 2 | 222 | 404 | 438 | 620 | 5.96e-14 | 75.5 |
| Msa0660570 | MtrunA17_Chr1g0207551 | 27.411 | 197 | 136 | 3 | 197 | 393 | 400 | 589 | 4.73e-15 | 79.3 |
| Msa0660570 | MtrunA17_Chr6g0458391 | 37.324 | 142 | 79 | 5 | 34 | 166 | 216 | 356 | 4.92e-15 | 79.3 |
| Msa0660570 | MtrunA17_Chr6g0458391 | 37.391 | 115 | 68 | 3 | 44 | 155 | 94 | 207 | 1.41e-14 | 77.8 |
| Msa0660570 | MtrunA17_Chr6g0458391 | 23.762 | 202 | 149 | 4 | 195 | 393 | 566 | 765 | 6.05e-11 | 65.9 |
| Msa0660570 | MtrunA17_Chr5g0440451 | 26.106 | 226 | 152 | 6 | 236 | 459 | 448 | 660 | 9.39e-15 | 78.6 |
| Msa0660570 | MtrunA17_Chr3g0082121 | 28.372 | 215 | 147 | 4 | 1 | 208 | 1 | 215 | 3.54e-14 | 76.3 |
| Msa0660570 | MtrunA17_Chr3g0082121 | 28.571 | 224 | 152 | 4 | 216 | 436 | 417 | 635 | 4.00e-11 | 66.6 |
| Msa0660570 | MtrunA17_Chr1g0196541 | 28.114 | 281 | 177 | 8 | 221 | 486 | 379 | 649 | 7.36e-14 | 75.5 |
| Msa0660570 | MtrunA17_Chr5g0441581 | 30.055 | 183 | 119 | 5 | 218 | 393 | 403 | 583 | 1.72e-13 | 73.9 |
| Msa0660570 | MtrunA17_Chr5g0441581 | 31.677 | 161 | 99 | 4 | 44 | 203 | 35 | 185 | 2.65e-12 | 70.5 |
| Msa0660570 | MtrunA17_Chr2g0329421 | 35.514 | 107 | 67 | 2 | 39 | 143 | 25 | 131 | 7.14e-13 | 68.6 |
| Msa0660570 | MtrunA17_Chr8g0389811 | 32.432 | 111 | 70 | 1 | 34 | 139 | 77 | 187 | 1.08e-12 | 67.8 |
| Msa0660570 | MtrunA17_Chr1g0203721 | 32.727 | 165 | 104 | 6 | 44 | 202 | 66 | 229 | 1.20e-12 | 71.6 |
| Msa0660570 | MtrunA17_Chr1g0203721 | 23.182 | 220 | 156 | 4 | 174 | 393 | 417 | 623 | 1.43e-11 | 68.2 |
| Msa0660570 | MtrunA17_Chr6g0451441 | 32.386 | 176 | 105 | 5 | 39 | 206 | 80 | 249 | 1.33e-12 | 70.9 |
| Msa0660570 | MtrunA17_Chr7g0233911 | 41.346 | 104 | 55 | 3 | 44 | 142 | 37 | 139 | 1.87e-12 | 67.4 |
| Msa0660570 | MtrunA17_Chr8g0363841 | 24.060 | 266 | 178 | 8 | 217 | 466 | 399 | 656 | 1.99e-12 | 70.9 |
| Msa0660570 | MtrunA17_Chr1g0198761 | 24.422 | 303 | 199 | 8 | 221 | 506 | 445 | 734 | 2.00e-12 | 70.9 |
| Msa0660570 | MtrunA17_Chr4g0033611 | 34.951 | 103 | 65 | 2 | 44 | 144 | 79 | 181 | 2.09e-12 | 68.2 |
| Msa0660570 | MtrunA17_Chr1g0171741 | 30.400 | 125 | 75 | 2 | 42 | 158 | 134 | 254 | 4.46e-12 | 67.0 |
| Msa0660570 | MtrunA17_Chr3g0080351 | 28.000 | 175 | 114 | 4 | 224 | 393 | 456 | 623 | 6.16e-12 | 69.3 |
| Msa0660570 | MtrunA17_Chr2g0294841 | 29.268 | 205 | 130 | 7 | 9 | 200 | 14 | 216 | 9.43e-12 | 68.6 |
| Msa0660570 | MtrunA17_Chr2g0329031 | 25.143 | 175 | 128 | 3 | 222 | 396 | 393 | 564 | 1.18e-11 | 68.2 |
| Msa0660570 | MtrunA17_Chr2g0276841 | 30.539 | 167 | 105 | 6 | 44 | 200 | 73 | 238 | 5.80e-11 | 65.9 |
| Msa0660570 | MtrunA17_Chr5g0431001 | 27.485 | 171 | 110 | 4 | 44 | 200 | 64 | 234 | 6.75e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660570 | AT4G38180.1 | 34.545 | 220 | 134 | 6 | 2 | 212 | 32 | 250 | 2.81e-23 | 105 |
| Msa0660570 | AT4G38180.1 | 28.814 | 177 | 125 | 1 | 221 | 397 | 463 | 638 | 5.79e-20 | 95.5 |
| Msa0660570 | AT4G38170.1 | 27.374 | 179 | 128 | 2 | 216 | 393 | 222 | 399 | 3.69e-17 | 85.9 |
| Msa0660570 | AT3G22170.2 | 26.966 | 178 | 128 | 2 | 221 | 398 | 448 | 623 | 3.40e-16 | 83.6 |
| Msa0660570 | AT3G22170.1 | 26.966 | 178 | 128 | 2 | 221 | 398 | 448 | 623 | 3.40e-16 | 83.6 |
| Msa0660570 | AT2G27110.2 | 29.747 | 158 | 110 | 1 | 236 | 393 | 423 | 579 | 1.09e-15 | 82.0 |
| Msa0660570 | AT2G27110.1 | 29.747 | 158 | 110 | 1 | 236 | 393 | 423 | 579 | 1.09e-15 | 82.0 |
| Msa0660570 | AT3G07500.1 | 38.235 | 136 | 72 | 5 | 16 | 141 | 3 | 136 | 1.13e-15 | 77.0 |
| Msa0660570 | AT2G27110.3 | 29.747 | 158 | 110 | 1 | 236 | 393 | 278 | 434 | 1.53e-15 | 81.3 |
| Msa0660570 | AT1G76320.1 | 27.168 | 173 | 122 | 3 | 222 | 394 | 377 | 545 | 2.65e-15 | 80.5 |
| Msa0660570 | AT1G76320.4 | 27.168 | 173 | 122 | 3 | 222 | 394 | 377 | 545 | 2.65e-15 | 80.5 |
| Msa0660570 | AT1G76320.2 | 27.168 | 173 | 122 | 3 | 222 | 394 | 377 | 545 | 2.69e-15 | 80.5 |
| Msa0660570 | AT1G76320.3 | 27.168 | 173 | 122 | 3 | 222 | 394 | 377 | 545 | 4.09e-15 | 79.7 |
| Msa0660570 | AT4G15090.1 | 24.242 | 231 | 167 | 4 | 221 | 451 | 439 | 661 | 5.29e-15 | 79.7 |
| Msa0660570 | AT4G15090.5 | 24.242 | 231 | 167 | 4 | 221 | 451 | 439 | 661 | 5.29e-15 | 79.7 |
| Msa0660570 | AT4G15090.3 | 24.242 | 231 | 167 | 4 | 221 | 451 | 439 | 661 | 5.29e-15 | 79.7 |
| Msa0660570 | AT4G15090.2 | 24.242 | 231 | 167 | 4 | 221 | 451 | 439 | 661 | 5.29e-15 | 79.7 |
| Msa0660570 | AT4G15090.4 | 24.242 | 231 | 167 | 4 | 221 | 451 | 439 | 661 | 5.29e-15 | 79.7 |
| Msa0660570 | AT5G18960.2 | 24.880 | 209 | 153 | 3 | 234 | 441 | 570 | 775 | 2.46e-12 | 70.9 |
| Msa0660570 | AT5G18960.2 | 40.206 | 97 | 46 | 3 | 44 | 139 | 46 | 131 | 8.84e-11 | 65.9 |
| Msa0660570 | AT5G18960.1 | 24.880 | 209 | 153 | 3 | 234 | 441 | 570 | 775 | 2.46e-12 | 70.9 |
| Msa0660570 | AT5G18960.1 | 40.206 | 97 | 46 | 3 | 44 | 139 | 46 | 131 | 8.84e-11 | 65.9 |
| Msa0660570 | AT3G59470.3 | 35.514 | 107 | 67 | 2 | 39 | 143 | 68 | 174 | 2.55e-12 | 68.2 |
| Msa0660570 | AT3G59470.1 | 35.514 | 107 | 67 | 2 | 39 | 143 | 68 | 174 | 2.55e-12 | 68.2 |
| Msa0660570 | AT3G59470.2 | 35.514 | 107 | 67 | 2 | 39 | 143 | 80 | 186 | 2.96e-12 | 68.2 |
| Msa0660570 | AT1G10240.2 | 29.545 | 176 | 115 | 5 | 44 | 210 | 51 | 226 | 5.89e-12 | 69.7 |
| Msa0660570 | AT1G10240.1 | 29.545 | 176 | 115 | 5 | 44 | 210 | 51 | 226 | 5.89e-12 | 69.7 |
| Msa0660570 | AT4G12850.2 | 39.216 | 102 | 60 | 2 | 39 | 139 | 9 | 109 | 8.01e-12 | 63.9 |
| Msa0660570 | AT5G28530.4 | 27.439 | 164 | 112 | 3 | 44 | 200 | 58 | 221 | 9.08e-12 | 68.9 |
| Msa0660570 | AT5G28530.5 | 27.439 | 164 | 112 | 3 | 44 | 200 | 58 | 221 | 9.19e-12 | 68.9 |
| Msa0660570 | AT5G28530.3 | 27.439 | 164 | 112 | 3 | 44 | 200 | 58 | 221 | 9.30e-12 | 68.9 |
| Msa0660570 | AT5G28530.2 | 27.439 | 164 | 112 | 3 | 44 | 200 | 58 | 221 | 9.30e-12 | 68.9 |
| Msa0660570 | AT5G28530.1 | 27.439 | 164 | 112 | 3 | 44 | 200 | 58 | 221 | 9.42e-12 | 68.9 |
| Msa0660570 | AT4G12850.4 | 39.216 | 102 | 60 | 2 | 39 | 139 | 9 | 109 | 1.33e-11 | 63.2 |
| Msa0660570 | AT4G19990.6 | 24.339 | 189 | 137 | 4 | 222 | 408 | 388 | 572 | 5.14e-11 | 66.6 |
| Msa0660570 | AT4G19990.2 | 24.339 | 189 | 137 | 4 | 222 | 408 | 388 | 572 | 5.14e-11 | 66.6 |
| Msa0660570 | AT4G19990.1 | 24.339 | 189 | 137 | 4 | 222 | 408 | 331 | 515 | 6.21e-11 | 66.2 |
| Msa0660570 | AT4G19990.3 | 24.339 | 189 | 137 | 4 | 222 | 408 | 388 | 572 | 6.67e-11 | 66.2 |
| Msa0660570 | AT4G19990.4 | 24.339 | 189 | 137 | 4 | 222 | 408 | 388 | 572 | 6.67e-11 | 66.2 |
| Msa0660570 | AT4G19990.5 | 24.339 | 189 | 137 | 4 | 222 | 408 | 388 | 572 | 8.55e-11 | 65.9 |
| Msa0660570 | AT4G19990.7 | 24.339 | 189 | 137 | 4 | 222 | 408 | 402 | 586 | 8.71e-11 | 65.9 |
| Msa0660570 | AT3G06250.2 | 24.528 | 212 | 150 | 5 | 234 | 441 | 546 | 751 | 9.48e-11 | 65.9 |
| Msa0660570 | AT3G06250.1 | 24.528 | 212 | 150 | 5 | 234 | 441 | 546 | 751 | 9.48e-11 | 65.9 |
| Msa0660570 | AT3G06250.3 | 24.528 | 212 | 150 | 5 | 234 | 441 | 546 | 751 | 9.48e-11 | 65.9 |
Find 139 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATAAGTGGAGAGTTTC+TGG | 0.119642 | 4_3:-71457861 | Msa0660570:CDS |
| TGTTAGAACCTGTCATATTT+TGG | 0.145212 | 4_3:-71457721 | Msa0660570:CDS |
| GTCTCATGGCACAAATAATA+TGG | 0.183652 | 4_3:+71456532 | None:intergenic |
| GTAATCATCCTTTGCTGATT+TGG | 0.196309 | 4_3:+71456461 | None:intergenic |
| CATCTTTCCATGTTACATTT+TGG | 0.217563 | 4_3:+71455556 | None:intergenic |
| AGTTGTCTGCTCGTGGAAAT+TGG | 0.230194 | 4_3:+71455394 | None:intergenic |
| CTCTATTTATGTTAGTTTAT+GGG | 0.247034 | 4_3:-71455232 | Msa0660570:intron |
| AAAGTAGATGCAATTTGATT+TGG | 0.270824 | 4_3:+71455456 | None:intergenic |
| AAAATTGATGCACCTTGATT+TGG | 0.276898 | 4_3:+71455420 | None:intergenic |
| AAGACCAATCCATCCGTTAT+TGG | 0.279284 | 4_3:-71456246 | Msa0660570:CDS |
| TGATAAACCCCATGTTAAAA+TGG | 0.283256 | 4_3:-71455583 | Msa0660570:CDS |
| TCACTCAATTGACGGTTCTT+AGG | 0.285255 | 4_3:+71457783 | None:intergenic |
| TTGGCGCCTGTAAAATAATT+AGG | 0.301126 | 4_3:+71455519 | None:intergenic |
| CATTCAAGTTCTGTTGGATA+TGG | 0.304475 | 4_3:-71455363 | Msa0660570:CDS |
| TCCAACCCGTTCTGCTCATT+TGG | 0.312832 | 4_3:-71457808 | Msa0660570:CDS |
| CCTTTGGCCTTGGCTTTGAT+AGG | 0.324333 | 4_3:+71456219 | None:intergenic |
| TTGCTTGTGATTCGAGAGTT+TGG | 0.328361 | 4_3:+71455150 | None:intergenic |
| CAACAGTTAAAGCAACAAAT+AGG | 0.336296 | 4_3:+71454998 | None:intergenic |
| ATACAGGCACAAAGAGTTAA+TGG | 0.341245 | 4_3:-71456844 | Msa0660570:CDS |
| GTTGTCTGCTCGTGGAAATT+GGG | 0.345810 | 4_3:+71455395 | None:intergenic |
| ACGAGGGGCACCTTTGGCCT+TGG | 0.345904 | 4_3:+71456209 | None:intergenic |
| TGAAGAAGGAAAAGAGGATA+TGG | 0.353695 | 4_3:-71458165 | Msa0660570:CDS |
| TGGATACTTACAAGAAGATT+AGG | 0.354642 | 4_3:-71458145 | Msa0660570:CDS |
| GAAAGGAGGTCATGAGAGTC+TGG | 0.365097 | 4_3:-71457682 | Msa0660570:CDS |
| ATAGCCTCTTTATAATCATC+TGG | 0.369789 | 4_3:+71456330 | None:intergenic |
| AGACATAAATGGTGAAGATT+TGG | 0.373826 | 4_3:-71458210 | Msa0660570:CDS |
| GCAATTTGATTTGGAAATTG+AGG | 0.377041 | 4_3:+71455465 | None:intergenic |
| CTTCTTACGAGGGGCACCTT+TGG | 0.378868 | 4_3:+71456203 | None:intergenic |
| AAGATCGGAACACTTTGAAT+TGG | 0.379246 | 4_3:+71455489 | None:intergenic |
| GCAAACGATGGAGACATAAA+TGG | 0.387588 | 4_3:-71458221 | Msa0660570:CDS |
| ACATCACGTCCAGCTAGTTC+TGG | 0.392972 | 4_3:+71456111 | None:intergenic |
| AAAACAAACATTGGAACAAA+TGG | 0.413346 | 4_3:+71455077 | None:intergenic |
| AAGTTTAAGATGAATAGATT+TGG | 0.423772 | 4_3:-71456651 | Msa0660570:CDS |
| CTGATAGTCTAATTTGCAAA+AGG | 0.431391 | 4_3:-71456488 | Msa0660570:CDS |
| CGAGTTTATGCCTTCACACC+TGG | 0.432567 | 4_3:+71456941 | None:intergenic |
| TCTGATAAAGCCCTTGTTGA+TGG | 0.437123 | 4_3:-71457759 | Msa0660570:CDS |
| TATCAGATTCACTCAATTGA+CGG | 0.439464 | 4_3:+71457775 | None:intergenic |
| CCATCACATTCAAGTTCTGT+TGG | 0.440650 | 4_3:-71455369 | Msa0660570:CDS |
| TGTAGACAGTTTGAACGGAT+TGG | 0.441359 | 4_3:-71456567 | Msa0660570:CDS |
| GAAGATTTGGCCAGCGGTAA+TGG | 0.442024 | 4_3:-71458197 | Msa0660570:CDS |
| GAAGGAAAGGCAAGAATAGA+AGG | 0.447532 | 4_3:-71457621 | Msa0660570:intron |
| AGAAGAAATCATCCAGGAAA+AGG | 0.463612 | 4_3:-71456182 | Msa0660570:CDS |
| GGATACTTACAAGAAGATTA+GGG | 0.465987 | 4_3:-71458144 | Msa0660570:CDS |
| CAAGAAGATTAGGGAATTGA+CGG | 0.467663 | 4_3:-71458135 | Msa0660570:CDS |
| AGGAACCAAATGAGCAGAAC+GGG | 0.471013 | 4_3:+71457803 | None:intergenic |
| ACTCAAAATTATCATCACTT+TGG | 0.472391 | 4_3:+71455115 | None:intergenic |
| CAATAAAAGAAGATCAAAAC+AGG | 0.473627 | 4_3:-71455864 | Msa0660570:intron |
| ATTTATGTCTCCATCGTTTG+CGG | 0.473976 | 4_3:+71458223 | None:intergenic |
| TAAATGTTGATACTAATAAG+TGG | 0.482914 | 4_3:-71457872 | Msa0660570:CDS |
| GTTTATGGGTGCCTTGGAGA+TGG | 0.483103 | 4_3:-71455218 | Msa0660570:CDS |
| TGTCAATGTTACTTCAATGC+AGG | 0.488636 | 4_3:-71455894 | Msa0660570:CDS |
| ATAGAGCTGTAAAAGAATAC+AGG | 0.492679 | 4_3:-71456860 | Msa0660570:CDS |
| AACTCTCGAATCACAAGCAA+TGG | 0.493257 | 4_3:-71455147 | Msa0660570:CDS |
| TCTCATGGCACAAATAATAT+GGG | 0.494840 | 4_3:+71456533 | None:intergenic |
| ATGTTAGTTTATGGGTGCCT+TGG | 0.495975 | 4_3:-71455224 | Msa0660570:intron |
| GGATGATGATATAAGAGGAT+TGG | 0.496802 | 4_3:-71458114 | Msa0660570:CDS |
| TTGACGGATGATGATATAAG+AGG | 0.497315 | 4_3:-71458119 | Msa0660570:CDS |
| GAAATCTATGCAGATTGTCA+TGG | 0.498853 | 4_3:-71458056 | Msa0660570:CDS |
| TATAACTACTTATACAATGA+AGG | 0.501991 | 4_3:-71457639 | Msa0660570:CDS |
| TTGCACTAGATTGAAAATGA+AGG | 0.505947 | 4_3:-71455779 | Msa0660570:intron |
| TTTGGAAATTGAGGAAAGAT+CGG | 0.506335 | 4_3:+71455474 | None:intergenic |
| AGGATTGGAATTTGATTCAG+AGG | 0.508865 | 4_3:-71458099 | Msa0660570:CDS |
| GATGTAAACAAAGATGATGA+TGG | 0.508994 | 4_3:-71458014 | Msa0660570:CDS |
| TAGATTGAAAATGAAGGGAT+TGG | 0.509056 | 4_3:-71455773 | Msa0660570:CDS |
| ATTAAACACGCCATTACCGC+TGG | 0.509907 | 4_3:+71458187 | None:intergenic |
| GTATCTAGTTCAGCTTGATA+AGG | 0.514742 | 4_3:-71456613 | Msa0660570:CDS |
| AGTCTGATTGATTTCATGCA+TGG | 0.520881 | 4_3:-71456888 | Msa0660570:CDS |
| ATCACCAATAACGGATGGAT+TGG | 0.524490 | 4_3:+71456242 | None:intergenic |
| AGATGATTATAAAGAGGCTA+TGG | 0.524840 | 4_3:-71456328 | Msa0660570:CDS |
| TTGTCTGCTCGTGGAAATTG+GGG | 0.529245 | 4_3:+71455396 | None:intergenic |
| AGAAACAAAGTACATATTCG+AGG | 0.529955 | 4_3:-71457938 | Msa0660570:CDS |
| ACTTTGAATTGGAACACCGT+TGG | 0.530199 | 4_3:+71455500 | None:intergenic |
| AGTGATGTGCTCGTGTCTCA+TGG | 0.530669 | 4_3:+71456518 | None:intergenic |
| TGCAGATTGTCATGGGTTTG+TGG | 0.531824 | 4_3:-71458048 | Msa0660570:CDS |
| AAATCTATGCAGATTGTCAT+GGG | 0.533515 | 4_3:-71458055 | Msa0660570:CDS |
| ATAGTCTAATTTGCAAAAGG+TGG | 0.533689 | 4_3:-71456485 | Msa0660570:CDS |
| CAACAGAACTTGAATGTGAT+GGG | 0.534436 | 4_3:+71455370 | None:intergenic |
| CAAAATGTAACATGGAAAGA+TGG | 0.535009 | 4_3:-71455555 | Msa0660570:CDS |
| CCAACAGAACTTGAATGTGA+TGG | 0.535015 | 4_3:+71455369 | None:intergenic |
| TGCTAATCGTTCCATCTCCA+AGG | 0.539064 | 4_3:+71455207 | None:intergenic |
| ATTTAAATGGCCGCAAACGA+TGG | 0.539363 | 4_3:-71458233 | None:intergenic |
| TGCAGAACACTTAGTTCGAA+TGG | 0.539821 | 4_3:+71457911 | None:intergenic |
| TGCACTAGATTGAAAATGAA+GGG | 0.542557 | 4_3:-71455778 | Msa0660570:intron |
| GTGGCATAAGAACTACATCC+AGG | 0.542673 | 4_3:-71456959 | Msa0660570:CDS |
| CATAAAACCCAAAATATGAC+AGG | 0.552239 | 4_3:+71457713 | None:intergenic |
| ACACCCAGATGATTATAAAG+AGG | 0.558171 | 4_3:-71456334 | Msa0660570:CDS |
| AATGGCGTGTTTAATGAAGA+AGG | 0.560249 | 4_3:-71458179 | Msa0660570:CDS |
| AATGTCCAGAGTCAAGATCA+AGG | 0.560616 | 4_3:-71455615 | Msa0660570:intron |
| TTTGATAGGATCACCAATAA+CGG | 0.561695 | 4_3:+71456233 | None:intergenic |
| ACTCTCGAATCACAAGCAAT+GGG | 0.562552 | 4_3:-71455146 | Msa0660570:CDS |
| ATGATTTCTTCTTCTTACGA+GGG | 0.564434 | 4_3:+71456193 | None:intergenic |
| TGATTATAAAGAGGCTATGG+AGG | 0.565059 | 4_3:-71456325 | Msa0660570:CDS |
| GTTTAATGAAGAAGGAAAAG+AGG | 0.565717 | 4_3:-71458171 | Msa0660570:CDS |
| CAAAACTGTCCAGAACTAGC+TGG | 0.566062 | 4_3:-71456120 | Msa0660570:CDS |
| TGTAACTTTGTTGTCAACAC+AGG | 0.566833 | 4_3:+71456795 | None:intergenic |
| GATGATTTCTTCTTCTTACG+AGG | 0.568426 | 4_3:+71456192 | None:intergenic |
| TAGCCTCTTTATAATCATCT+GGG | 0.570856 | 4_3:+71456331 | None:intergenic |
| TCTAAATGAAGTCAATGAAG+AGG | 0.571099 | 4_3:-71456088 | Msa0660570:CDS |
| ATAGGATCACCAATAACGGA+TGG | 0.579076 | 4_3:+71456237 | None:intergenic |
| CTACTTATACAATGAAGGAA+AGG | 0.581665 | 4_3:-71457634 | Msa0660570:CDS |
| AACGGGTTGGAGTTAACTCA+TGG | 0.583564 | 4_3:+71457820 | None:intergenic |
| ATGTAAACAAAGATGATGAT+GGG | 0.584402 | 4_3:-71458013 | Msa0660570:CDS |
| GTGATTGTAGACAGTTTGAA+CGG | 0.585179 | 4_3:-71456572 | Msa0660570:CDS |
| GTTGATGGTCTTCACGCACA+CGG | 0.587234 | 4_3:-71457744 | Msa0660570:CDS |
| AGTTAACTCATGGTTGTGTG+AGG | 0.591294 | 4_3:+71457830 | None:intergenic |
| GATTATAAAGAGGCTATGGA+GGG | 0.593735 | 4_3:-71456324 | Msa0660570:CDS |
| AGAACTACATCCAGGTGTGA+AGG | 0.599918 | 4_3:-71456951 | Msa0660570:CDS |
| TCGATTAGTATGTAATAGAG+AGG | 0.600970 | 4_3:-71457976 | Msa0660570:CDS |
| ATAAAGAGGCGTCGTGAGAG+TGG | 0.603066 | 4_3:-71456279 | Msa0660570:CDS |
| ACCAAATGAGCAGAACGGGT+TGG | 0.604954 | 4_3:+71457807 | None:intergenic |
| GTTTGTGTGAGAAAATAAAG+AGG | 0.607012 | 4_3:-71456293 | Msa0660570:CDS |
| TGTTGACAACAAAGTTACAC+AGG | 0.607980 | 4_3:-71456791 | Msa0660570:CDS |
| CCTATCAAAGCCAAGGCCAA+AGG | 0.609665 | 4_3:-71456219 | Msa0660570:CDS |
| TTTATGATGGCTCAGAAAGG+AGG | 0.609928 | 4_3:-71457696 | Msa0660570:CDS |
| AAAATGGATAAGAATACATG+TGG | 0.610891 | 4_3:-71455184 | Msa0660570:CDS |
| AAAGGAGGTCATGAGAGTCT+GGG | 0.612373 | 4_3:-71457681 | Msa0660570:CDS |
| TGGAAGACCAAAATGTAACA+TGG | 0.612794 | 4_3:-71455563 | Msa0660570:CDS |
| GTGTTGATAAGAGTTGTGAC+AGG | 0.616075 | 4_3:-71455934 | Msa0660570:CDS |
| TACTCACAGGTGTATGATGA+GGG | 0.616777 | 4_3:+71455325 | None:intergenic |
| TGGTGATCCTATCAAAGCCA+AGG | 0.618217 | 4_3:-71456226 | Msa0660570:CDS |
| GATGGGAAGTTGTCTGCTCG+TGG | 0.621816 | 4_3:+71455387 | None:intergenic |
| GTAAGAAGAAGAAATCATCC+AGG | 0.628639 | 4_3:-71456188 | Msa0660570:CDS |
| TAGGAACCAAATGAGCAGAA+CGG | 0.629399 | 4_3:+71457802 | None:intergenic |
| GTTAACTCATGGTTGTGTGA+GGG | 0.630795 | 4_3:+71457831 | None:intergenic |
| TGATTTCTTCTTCTTACGAG+GGG | 0.631063 | 4_3:+71456194 | None:intergenic |
| CATATGAGATGAAGACAATG+TGG | 0.635222 | 4_3:-71457012 | Msa0660570:intron |
| GTGCGTGAAGACCATCAACA+AGG | 0.635936 | 4_3:+71457748 | None:intergenic |
| CGATTAGTATGTAATAGAGA+GGG | 0.642038 | 4_3:-71457975 | Msa0660570:CDS |
| GCACAAATAATATGGGAACA+TGG | 0.643217 | 4_3:+71456540 | None:intergenic |
| ATACTCACAGGTGTATGATG+AGG | 0.644284 | 4_3:+71455324 | None:intergenic |
| AAGGTGGACCAAATCAGCAA+AGG | 0.645642 | 4_3:-71456469 | Msa0660570:CDS |
| ATTATAAAGAGGCTATGGAG+GGG | 0.655805 | 4_3:-71456323 | Msa0660570:CDS |
| TTCGAACTAAGTGTTCTGCA+AGG | 0.661356 | 4_3:-71457908 | Msa0660570:CDS |
| CAGTAGACATAGTTCCTCGA+CGG | 0.666039 | 4_3:+71456388 | None:intergenic |
| ATATGAGATGAAGACAATGT+GGG | 0.670288 | 4_3:-71457011 | Msa0660570:intron |
| TGCGTGAAGACCATCAACAA+GGG | 0.673392 | 4_3:+71457749 | None:intergenic |
| AATGGTGAAGATTTGGCCAG+CGG | 0.682068 | 4_3:-71458203 | Msa0660570:CDS |
| AAAATGTTCATGTTCCGTCG+AGG | 0.700917 | 4_3:-71456402 | Msa0660570:CDS |
| TGTCTGCTCGTGGAAATTGG+GGG | 0.731356 | 4_3:+71455397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGAAAATTTATTTTGGT+CGG | - | chr4_3:71455735-71455754 | Msa0660570:CDS | 15.0% |
| !! | AAACAACAAAAATAAACAAT+TGG | + | chr4_3:71458203-71458222 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTTGTTGTTTT+AGG | - | chr4_3:71458204-71458223 | Msa0660570:CDS | 15.0% |
| !! | TAAATGTTGATACTAATAAG+TGG | - | chr4_3:71455368-71455387 | Msa0660570:CDS | 20.0% |
| !! | TATAACTACTTATACAATGA+AGG | - | chr4_3:71455601-71455620 | Msa0660570:CDS | 20.0% |
| !!! | GACGTTTAGAAAATTTATTT+TGG | - | chr4_3:71455731-71455750 | Msa0660570:CDS | 20.0% |
| !! | ATAATTAGCATAAATCAATG+AGG | + | chr4_3:71456127-71456146 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGATGAATAGATT+TGG | - | chr4_3:71456589-71456608 | Msa0660570:CDS | 20.0% |
| !!! | TAATTATAATTTGTTTGCAC+AGG | - | chr4_3:71457283-71457302 | Msa0660570:intron | 20.0% |
| !!! | AATTATAATTTGTTTGCACA+GGG | - | chr4_3:71457284-71457303 | Msa0660570:intron | 20.0% |
| !!! | TATGTTCCTAATTATTTTAC+AGG | - | chr4_3:71457715-71457734 | Msa0660570:CDS | 20.0% |
| !!! | TCTCTATTTATGTTAGTTTA+TGG | - | chr4_3:71458007-71458026 | Msa0660570:CDS | 20.0% |
| !!! | CTCTATTTATGTTAGTTTAT+GGG | - | chr4_3:71458008-71458027 | Msa0660570:CDS | 20.0% |
| !! | AAAAATGTCAAAACAAACAT+TGG | + | chr4_3:71458175-71458194 | None:intergenic | 20.0% |
| ! | ATGTAAACAAAGATGATGAT+GGG | - | chr4_3:71455227-71455246 | Msa0660570:intron | 25.0% |
| !!! | TCATATTTTGGGTTTTATGA+TGG | - | chr4_3:71455531-71455550 | Msa0660570:CDS | 25.0% |
| !! | GAAAATTCTTCCAAGAATTT+TGG | + | chr4_3:71456105-71456124 | None:intergenic | 25.0% |
| !! | AATTTGAAATTGAGTGGAAA+AGG | - | chr4_3:71456157-71456176 | Msa0660570:CDS | 25.0% |
| !! | ATTTGAAATTGAGTGGAAAA+GGG | - | chr4_3:71456158-71456177 | Msa0660570:CDS | 25.0% |
| ! | TACATTTATCAGACAATACA+TGG | - | chr4_3:71456195-71456214 | Msa0660570:CDS | 25.0% |
| ! | ACATTTATCAGACAATACAT+GGG | - | chr4_3:71456196-71456215 | Msa0660570:CDS | 25.0% |
| ! | CAATAAAAGAAGATCAAAAC+AGG | - | chr4_3:71457376-71457395 | Msa0660570:intron | 25.0% |
| !!! | AAGATACTTGATACTTTTTG+TGG | - | chr4_3:71457405-71457424 | Msa0660570:intron | 25.0% |
| !! | TTATCTGTCATGTTTTCATT+AGG | + | chr4_3:71457497-71457516 | None:intergenic | 25.0% |
| ! | AGTAGTTTCTCATAGTTAAT+TGG | - | chr4_3:71457545-71457564 | Msa0660570:intron | 25.0% |
| ! | AAAGTAGATGCAATTTGATT+TGG | + | chr4_3:71457787-71457806 | None:intergenic | 25.0% |
| ! | AAAATGGATAAGAATACATG+TGG | - | chr4_3:71458056-71458075 | Msa0660570:CDS | 25.0% |
| ! | ACTCAAAATTATCATCACTT+TGG | + | chr4_3:71458128-71458147 | None:intergenic | 25.0% |
| ! | AAAACAAACATTGGAACAAA+TGG | + | chr4_3:71458166-71458185 | None:intergenic | 25.0% |
| AGACATAAATGGTGAAGATT+TGG | - | chr4_3:71455030-71455049 | Msa0660570:three_prime_UTR | 30.0% | |
| GTTTAATGAAGAAGGAAAAG+AGG | - | chr4_3:71455069-71455088 | Msa0660570:three_prime_UTR | 30.0% | |
| TGGATACTTACAAGAAGATT+AGG | - | chr4_3:71455095-71455114 | Msa0660570:three_prime_UTR | 30.0% | |
| GGATACTTACAAGAAGATTA+GGG | - | chr4_3:71455096-71455115 | Msa0660570:three_prime_UTR | 30.0% | |
| AAATCTATGCAGATTGTCAT+GGG | - | chr4_3:71455185-71455204 | Msa0660570:CDS | 30.0% | |
| GATGTAAACAAAGATGATGA+TGG | - | chr4_3:71455226-71455245 | Msa0660570:intron | 30.0% | |
| TCGATTAGTATGTAATAGAG+AGG | - | chr4_3:71455264-71455283 | Msa0660570:intron | 30.0% | |
| CGATTAGTATGTAATAGAGA+GGG | - | chr4_3:71455265-71455284 | Msa0660570:intron | 30.0% | |
| AGAAACAAAGTACATATTCG+AGG | - | chr4_3:71455302-71455321 | Msa0660570:intron | 30.0% | |
| TATCAGATTCACTCAATTGA+CGG | + | chr4_3:71455468-71455487 | None:intergenic | 30.0% | |
| ! | TGTTAGAACCTGTCATATTT+TGG | - | chr4_3:71455519-71455538 | Msa0660570:CDS | 30.0% |
| ! | GTTAGAACCTGTCATATTTT+GGG | - | chr4_3:71455520-71455539 | Msa0660570:CDS | 30.0% |
| CATAAAACCCAAAATATGAC+AGG | + | chr4_3:71455530-71455549 | None:intergenic | 30.0% | |
| CTACTTATACAATGAAGGAA+AGG | - | chr4_3:71455606-71455625 | Msa0660570:CDS | 30.0% | |
| GTAAACTTCGAAAAGAACAT+TGG | + | chr4_3:71455697-71455716 | None:intergenic | 30.0% | |
| !!! | AAGCCTCTTGTTATTTTTTC+TGG | - | chr4_3:71455838-71455857 | Msa0660570:intron | 30.0% |
| !!! | AGCCTCTTGTTATTTTTTCT+GGG | - | chr4_3:71455839-71455858 | Msa0660570:intron | 30.0% |
| AAATTATAGTTCCTCCATGA+TGG | + | chr4_3:71455870-71455889 | None:intergenic | 30.0% | |
| ! | CATGGAGGAACTATAATTTT+TGG | - | chr4_3:71455871-71455890 | Msa0660570:CDS | 30.0% |
| TGTGAAGAATCCAAAATTCT+TGG | - | chr4_3:71456092-71456111 | Msa0660570:CDS | 30.0% | |
| GATTTATGCTAATTATACCG+TGG | - | chr4_3:71456131-71456150 | Msa0660570:CDS | 30.0% | |
| CTCAATTTCAAATTTGTCCA+CGG | + | chr4_3:71456151-71456170 | None:intergenic | 30.0% | |
| ! | TGGACAAATTTGAAATTGAG+TGG | - | chr4_3:71456151-71456170 | Msa0660570:CDS | 30.0% |
| ATATGAGATGAAGACAATGT+GGG | - | chr4_3:71456229-71456248 | Msa0660570:CDS | 30.0% | |
| ATAGAGCTGTAAAAGAATAC+AGG | - | chr4_3:71456380-71456399 | Msa0660570:CDS | 30.0% | |
| AAGCTTCAAAAATCTTTACG+AGG | - | chr4_3:71456482-71456501 | Msa0660570:CDS | 30.0% | |
| TCTCATGGCACAAATAATAT+GGG | + | chr4_3:71456710-71456729 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAATTAGACTATC+AGG | + | chr4_3:71456754-71456773 | None:intergenic | 30.0% |
| ! | CTGATAGTCTAATTTGCAAA+AGG | - | chr4_3:71456752-71456771 | Msa0660570:CDS | 30.0% |
| ! | ATAGTCTAATTTGCAAAAGG+TGG | - | chr4_3:71456755-71456774 | Msa0660570:CDS | 30.0% |
| TAGCCTCTTTATAATCATCT+GGG | + | chr4_3:71456912-71456931 | None:intergenic | 30.0% | |
| ATAGCCTCTTTATAATCATC+TGG | + | chr4_3:71456913-71456932 | None:intergenic | 30.0% | |
| AGATGATTATAAAGAGGCTA+TGG | - | chr4_3:71456912-71456931 | Msa0660570:CDS | 30.0% | |
| GTTTGTGTGAGAAAATAAAG+AGG | - | chr4_3:71456947-71456966 | Msa0660570:CDS | 30.0% | |
| TTTGATAGGATCACCAATAA+CGG | + | chr4_3:71457010-71457029 | None:intergenic | 30.0% | |
| ATGATTTCTTCTTCTTACGA+GGG | + | chr4_3:71457050-71457069 | None:intergenic | 30.0% | |
| TCTAAATGAAGTCAATGAAG+AGG | - | chr4_3:71457152-71457171 | Msa0660570:intron | 30.0% | |
| CAAAAACACATTTAACACGA+TGG | + | chr4_3:71457233-71457252 | None:intergenic | 30.0% | |
| TTGCACTAGATTGAAAATGA+AGG | - | chr4_3:71457461-71457480 | Msa0660570:intron | 30.0% | |
| TGCACTAGATTGAAAATGAA+GGG | - | chr4_3:71457462-71457481 | Msa0660570:intron | 30.0% | |
| TAGATTGAAAATGAAGGGAT+TGG | - | chr4_3:71457467-71457486 | Msa0660570:intron | 30.0% | |
| TGATAAACCCCATGTTAAAA+TGG | - | chr4_3:71457657-71457676 | Msa0660570:CDS | 30.0% | |
| !! | TTGGTCTTCCATTTTAACAT+GGG | + | chr4_3:71457668-71457687 | None:intergenic | 30.0% |
| !! | TTTGGTCTTCCATTTTAACA+TGG | + | chr4_3:71457669-71457688 | None:intergenic | 30.0% |
| ! | CATCTTTCCATGTTACATTT+TGG | + | chr4_3:71457687-71457706 | None:intergenic | 30.0% |
| CAAAATGTAACATGGAAAGA+TGG | - | chr4_3:71457685-71457704 | Msa0660570:CDS | 30.0% | |
| TTTGGAAATTGAGGAAAGAT+CGG | + | chr4_3:71457769-71457788 | None:intergenic | 30.0% | |
| !! | GCAATTTGATTTGGAAATTG+AGG | + | chr4_3:71457778-71457797 | None:intergenic | 30.0% |
| !! | CCTTGATTTGGAAAAAATTG+TGG | + | chr4_3:71457811-71457830 | None:intergenic | 30.0% |
| !!! | CCACAATTTTTTCCAAATCA+AGG | - | chr4_3:71457808-71457827 | Msa0660570:CDS | 30.0% |
| AAAATTGATGCACCTTGATT+TGG | + | chr4_3:71457823-71457842 | None:intergenic | 30.0% | |
| !! | ATAATTTTGAGTCGTGCAAA+AGG | - | chr4_3:71458136-71458155 | Msa0660570:CDS | 30.0% |
| ATTTATGTCTCCATCGTTTG+CGG | + | chr4_3:71455020-71455039 | None:intergenic | 35.0% | |
| AATGGCGTGTTTAATGAAGA+AGG | - | chr4_3:71455061-71455080 | Msa0660570:three_prime_UTR | 35.0% | |
| TGAAGAAGGAAAAGAGGATA+TGG | - | chr4_3:71455075-71455094 | Msa0660570:three_prime_UTR | 35.0% | |
| CAAGAAGATTAGGGAATTGA+CGG | - | chr4_3:71455105-71455124 | Msa0660570:three_prime_UTR | 35.0% | |
| ! | TTGACGGATGATGATATAAG+AGG | - | chr4_3:71455121-71455140 | Msa0660570:exon | 35.0% |
| GGATGATGATATAAGAGGAT+TGG | - | chr4_3:71455126-71455145 | Msa0660570:exon | 35.0% | |
| AGGATTGGAATTTGATTCAG+AGG | - | chr4_3:71455141-71455160 | Msa0660570:CDS | 35.0% | |
| GAAATCTATGCAGATTGTCA+TGG | - | chr4_3:71455184-71455203 | Msa0660570:CDS | 35.0% | |
| ACTAATAAGTGGAGAGTTTC+TGG | - | chr4_3:71455379-71455398 | Msa0660570:CDS | 35.0% | |
| AAGTTTACCACAACAGAAGA+AGG | - | chr4_3:71455709-71455728 | Msa0660570:intron | 35.0% | |
| CAAAACACTCATAGTCAATC+CGG | + | chr4_3:71455771-71455790 | None:intergenic | 35.0% | |
| ! | GGATTGACTATGAGTGTTTT+GGG | - | chr4_3:71455770-71455789 | Msa0660570:CDS | 35.0% |
| ! | GATTGACTATGAGTGTTTTG+GGG | - | chr4_3:71455771-71455790 | Msa0660570:CDS | 35.0% |
| CACCCAGAAAAAATAACAAG+AGG | + | chr4_3:71455844-71455863 | None:intergenic | 35.0% | |
| ATGTATCACAAACAGCCTAA+AGG | - | chr4_3:71455961-71455980 | Msa0660570:intron | 35.0% | |
| TGTATCACAAACAGCCTAAA+GGG | - | chr4_3:71455962-71455981 | Msa0660570:intron | 35.0% | |
| AATGAGAGAAGCTATCAAAG+AGG | - | chr4_3:71456008-71456027 | Msa0660570:intron | 35.0% | |
| CATATGAGATGAAGACAATG+TGG | - | chr4_3:71456228-71456247 | Msa0660570:CDS | 35.0% | |
| !!! | CATGCGAGAAAACTTTTTTG+TGG | - | chr4_3:71456262-71456281 | Msa0660570:CDS | 35.0% |
| ! | AGTCTGATTGATTTCATGCA+TGG | - | chr4_3:71456352-71456371 | Msa0660570:CDS | 35.0% |
| ATACAGGCACAAAGAGTTAA+TGG | - | chr4_3:71456396-71456415 | Msa0660570:CDS | 35.0% | |
| ! | TGTAACTTTGTTGTCAACAC+AGG | + | chr4_3:71456448-71456467 | None:intergenic | 35.0% |
| TGTTGACAACAAAGTTACAC+AGG | - | chr4_3:71456449-71456468 | Msa0660570:CDS | 35.0% | |
| ! | GTATCTAGTTCAGCTTGATA+AGG | - | chr4_3:71456627-71456646 | Msa0660570:CDS | 35.0% |
| GTGATTGTAGACAGTTTGAA+CGG | - | chr4_3:71456668-71456687 | Msa0660570:CDS | 35.0% | |
| GCACAAATAATATGGGAACA+TGG | + | chr4_3:71456703-71456722 | None:intergenic | 35.0% | |
| GTCTCATGGCACAAATAATA+TGG | + | chr4_3:71456711-71456730 | None:intergenic | 35.0% | |
| ! | GTAATCATCCTTTGCTGATT+TGG | + | chr4_3:71456782-71456801 | None:intergenic | 35.0% |
| ACACCCAGATGATTATAAAG+AGG | - | chr4_3:71456906-71456925 | Msa0660570:CDS | 35.0% | |
| TGATTATAAAGAGGCTATGG+AGG | - | chr4_3:71456915-71456934 | Msa0660570:CDS | 35.0% | |
| GATTATAAAGAGGCTATGGA+GGG | - | chr4_3:71456916-71456935 | Msa0660570:CDS | 35.0% | |
| ATTATAAAGAGGCTATGGAG+GGG | - | chr4_3:71456917-71456936 | Msa0660570:CDS | 35.0% | |
| TGATTTCTTCTTCTTACGAG+GGG | + | chr4_3:71457049-71457068 | None:intergenic | 35.0% | |
| GATGATTTCTTCTTCTTACG+AGG | + | chr4_3:71457051-71457070 | None:intergenic | 35.0% | |
| GTAAGAAGAAGAAATCATCC+AGG | - | chr4_3:71457052-71457071 | Msa0660570:intron | 35.0% | |
| AGAAGAAATCATCCAGGAAA+AGG | - | chr4_3:71457058-71457077 | Msa0660570:intron | 35.0% | |
| ! | TGTCAATGTTACTTCAATGC+AGG | - | chr4_3:71457346-71457365 | Msa0660570:intron | 35.0% |
| ACAGATAAAAACATGCACAC+AGG | - | chr4_3:71457509-71457528 | Msa0660570:intron | 35.0% | |
| !! | TGGTCTTCCATTTTAACATG+GGG | + | chr4_3:71457667-71457686 | None:intergenic | 35.0% |
| TGGAAGACCAAAATGTAACA+TGG | - | chr4_3:71457677-71457696 | Msa0660570:CDS | 35.0% | |
| TTGGCGCCTGTAAAATAATT+AGG | + | chr4_3:71457724-71457743 | None:intergenic | 35.0% | |
| !! | AATTATTTTACAGGCGCCAA+CGG | - | chr4_3:71457724-71457743 | Msa0660570:CDS | 35.0% |
| AAGATCGGAACACTTTGAAT+TGG | + | chr4_3:71457754-71457773 | None:intergenic | 35.0% | |
| CAACAGAACTTGAATGTGAT+GGG | + | chr4_3:71457873-71457892 | None:intergenic | 35.0% | |
| ! | CATTCAAGTTCTGTTGGATA+TGG | - | chr4_3:71457877-71457896 | Msa0660570:CDS | 35.0% |
| TGAATGTTGTGTATACTCAC+AGG | + | chr4_3:71457931-71457950 | None:intergenic | 35.0% | |
| GATGGAACGATTAGCAAAAA+TGG | - | chr4_3:71458040-71458059 | Msa0660570:CDS | 35.0% | |
| GCAAACGATGGAGACATAAA+TGG | - | chr4_3:71455019-71455038 | Msa0660570:three_prime_UTR | 40.0% | |
| TGCAGAACACTTAGTTCGAA+TGG | + | chr4_3:71455332-71455351 | None:intergenic | 40.0% | |
| TTCGAACTAAGTGTTCTGCA+AGG | - | chr4_3:71455332-71455351 | Msa0660570:CDS | 40.0% | |
| GTTAACTCATGGTTGTGTGA+GGG | + | chr4_3:71455412-71455431 | None:intergenic | 40.0% | |
| AGTTAACTCATGGTTGTGTG+AGG | + | chr4_3:71455413-71455432 | None:intergenic | 40.0% | |
| TAGGAACCAAATGAGCAGAA+CGG | + | chr4_3:71455441-71455460 | None:intergenic | 40.0% | |
| TCACTCAATTGACGGTTCTT+AGG | + | chr4_3:71455460-71455479 | None:intergenic | 40.0% | |
| TCTGATAAAGCCCTTGTTGA+TGG | - | chr4_3:71455481-71455500 | Msa0660570:CDS | 40.0% | |
| !! | GGTTTTATGATGGCTCAGAA+AGG | - | chr4_3:71455541-71455560 | Msa0660570:CDS | 40.0% |
| TTTATGATGGCTCAGAAAGG+AGG | - | chr4_3:71455544-71455563 | Msa0660570:CDS | 40.0% | |
| GAAGGAAAGGCAAGAATAGA+AGG | - | chr4_3:71455619-71455638 | Msa0660570:intron | 40.0% | |
| GAAAGGCAAGAATAGAAGGT+GGG | - | chr4_3:71455623-71455642 | Msa0660570:intron | 40.0% | |
| AAAGGCAAGAATAGAAGGTG+GGG | - | chr4_3:71455624-71455643 | Msa0660570:intron | 40.0% | |
| TAAACGTCCTTCTTCTGTTG+TGG | + | chr4_3:71455719-71455738 | None:intergenic | 40.0% | |
| ! | CGGATTGACTATGAGTGTTT+TGG | - | chr4_3:71455769-71455788 | Msa0660570:CDS | 40.0% |
| TTGCATTTGACGCAACTTAC+AGG | - | chr4_3:71455800-71455819 | Msa0660570:intron | 40.0% | |
| ! | TTTTCTGGGTGTAACCATCA+TGG | - | chr4_3:71455853-71455872 | Msa0660570:intron | 40.0% |
| AAACACGTGAGACATACAAG+TGG | - | chr4_3:71455914-71455933 | Msa0660570:CDS | 40.0% | |
| GTATCACAAACAGCCTAAAG+GGG | - | chr4_3:71455963-71455982 | Msa0660570:intron | 40.0% | |
| !! | GTTTTTGAGCAGTCTAGTCT+CGG | - | chr4_3:71456556-71456575 | Msa0660570:CDS | 40.0% |
| TGTAGACAGTTTGAACGGAT+TGG | - | chr4_3:71456673-71456692 | Msa0660570:CDS | 40.0% | |
| AAAATGTTCATGTTCCGTCG+AGG | - | chr4_3:71456838-71456857 | Msa0660570:CDS | 40.0% | |
| AAGACCAATCCATCCGTTAT+TGG | - | chr4_3:71456994-71457013 | Msa0660570:CDS | 40.0% | |
| !! | ATCACCAATAACGGATGGAT+TGG | + | chr4_3:71457001-71457020 | None:intergenic | 40.0% |
| ! | ATAGGATCACCAATAACGGA+TGG | + | chr4_3:71457006-71457025 | None:intergenic | 40.0% |
| ! | AGAACAATGTCTCCTTTTCC+TGG | + | chr4_3:71457073-71457092 | None:intergenic | 40.0% |
| TCTGACCATGACAAAAACGT+TGG | - | chr4_3:71457189-71457208 | Msa0660570:intron | 40.0% | |
| ! | CACATCCAACGTTTTTGTCA+TGG | + | chr4_3:71457197-71457216 | None:intergenic | 40.0% |
| TGACAAAAACGTTGGATGTG+AGG | - | chr4_3:71457197-71457216 | Msa0660570:intron | 40.0% | |
| ! | GTGTTGATAAGAGTTGTGAC+AGG | - | chr4_3:71457306-71457325 | Msa0660570:intron | 40.0% |
| AATGTCCAGAGTCAAGATCA+AGG | - | chr4_3:71457625-71457644 | Msa0660570:CDS | 40.0% | |
| ACTTTGAATTGGAACACCGT+TGG | + | chr4_3:71457743-71457762 | None:intergenic | 40.0% | |
| CCAACAGAACTTGAATGTGA+TGG | + | chr4_3:71457874-71457893 | None:intergenic | 40.0% | |
| ! | CCATCACATTCAAGTTCTGT+TGG | - | chr4_3:71457871-71457890 | Msa0660570:CDS | 40.0% |
| TACTCACAGGTGTATGATGA+GGG | + | chr4_3:71457918-71457937 | None:intergenic | 40.0% | |
| ATACTCACAGGTGTATGATG+AGG | + | chr4_3:71457919-71457938 | None:intergenic | 40.0% | |
| ! | ATGTTAGTTTATGGGTGCCT+TGG | - | chr4_3:71458016-71458035 | Msa0660570:CDS | 40.0% |
| TTGCTTGTGATTCGAGAGTT+TGG | + | chr4_3:71458093-71458112 | None:intergenic | 40.0% | |
| AACTCTCGAATCACAAGCAA+TGG | - | chr4_3:71458093-71458112 | Msa0660570:CDS | 40.0% | |
| ACTCTCGAATCACAAGCAAT+GGG | - | chr4_3:71458094-71458113 | Msa0660570:CDS | 40.0% | |
| AATGGTGAAGATTTGGCCAG+CGG | - | chr4_3:71455037-71455056 | Msa0660570:three_prime_UTR | 45.0% | |
| ATTAAACACGCCATTACCGC+TGG | + | chr4_3:71455056-71455075 | None:intergenic | 45.0% | |
| TGCAGATTGTCATGGGTTTG+TGG | - | chr4_3:71455192-71455211 | Msa0660570:CDS | 45.0% | |
| !! | AACGGGTTGGAGTTAACTCA+TGG | + | chr4_3:71455423-71455442 | None:intergenic | 45.0% |
| AGGAACCAAATGAGCAGAAC+GGG | + | chr4_3:71455440-71455459 | None:intergenic | 45.0% | |
| TGCGTGAAGACCATCAACAA+GGG | + | chr4_3:71455494-71455513 | None:intergenic | 45.0% | |
| AAAGGAGGTCATGAGAGTCT+GGG | - | chr4_3:71455559-71455578 | Msa0660570:CDS | 45.0% | |
| !! | ATGAGAGTCTGGGATTTTGC+AGG | - | chr4_3:71455569-71455588 | Msa0660570:CDS | 45.0% |
| GGAAAGGCAAGAATAGAAGG+TGG | - | chr4_3:71455622-71455641 | Msa0660570:intron | 45.0% | |
| TGCTGCGTTGAGTTATTTGC+AGG | - | chr4_3:71455654-71455673 | Msa0660570:intron | 45.0% | |
| !!! | CTATGAGTGTTTTGGGGATG+TGG | - | chr4_3:71455777-71455796 | Msa0660570:intron | 45.0% |
| CAAAGACGATGCAACGAGTT+TGG | + | chr4_3:71456039-71456058 | None:intergenic | 45.0% | |
| CGTTGCATCGTCTTTGTTCA+TGG | - | chr4_3:71456043-71456062 | Msa0660570:intron | 45.0% | |
| GTGGCATAAGAACTACATCC+AGG | - | chr4_3:71456281-71456300 | Msa0660570:CDS | 45.0% | |
| AGAACTACATCCAGGTGTGA+AGG | - | chr4_3:71456289-71456308 | Msa0660570:CDS | 45.0% | |
| AAGGTGGACCAAATCAGCAA+AGG | - | chr4_3:71456771-71456790 | Msa0660570:CDS | 45.0% | |
| CAGTAGACATAGTTCCTCGA+CGG | + | chr4_3:71456855-71456874 | None:intergenic | 45.0% | |
| TGGTGATCCTATCAAAGCCA+AGG | - | chr4_3:71457014-71457033 | Msa0660570:intron | 45.0% | |
| CAAAACTGTCCAGAACTAGC+TGG | - | chr4_3:71457120-71457139 | Msa0660570:intron | 45.0% | |
| CATCACCTTGATCTTGACTC+TGG | + | chr4_3:71457633-71457652 | None:intergenic | 45.0% | |
| TTGTCTGCTCGTGGAAATTG+GGG | + | chr4_3:71457847-71457866 | None:intergenic | 45.0% | |
| GTTGTCTGCTCGTGGAAATT+GGG | + | chr4_3:71457848-71457867 | None:intergenic | 45.0% | |
| AGTTGTCTGCTCGTGGAAAT+TGG | + | chr4_3:71457849-71457868 | None:intergenic | 45.0% | |
| TGCTAATCGTTCCATCTCCA+AGG | + | chr4_3:71458036-71458055 | None:intergenic | 45.0% | |
| GAAGATTTGGCCAGCGGTAA+TGG | - | chr4_3:71455043-71455062 | Msa0660570:three_prime_UTR | 50.0% | |
| TCCAACCCGTTCTGCTCATT+TGG | - | chr4_3:71455432-71455451 | Msa0660570:CDS | 50.0% | |
| ACCAAATGAGCAGAACGGGT+TGG | + | chr4_3:71455436-71455455 | None:intergenic | 50.0% | |
| GTGCGTGAAGACCATCAACA+AGG | + | chr4_3:71455495-71455514 | None:intergenic | 50.0% | |
| !! | GTTGATGGTCTTCACGCACA+CGG | - | chr4_3:71455496-71455515 | Msa0660570:CDS | 50.0% |
| GAAAGGAGGTCATGAGAGTC+TGG | - | chr4_3:71455558-71455577 | Msa0660570:CDS | 50.0% | |
| !! | GAGTCTGGGATTTTGCAGGA+AGG | - | chr4_3:71455573-71455592 | Msa0660570:CDS | 50.0% |
| TTTGGTCGGATTCAACCAGC+CGG | - | chr4_3:71455749-71455768 | Msa0660570:CDS | 50.0% | |
| ACACTCATAGTCAATCCGGC+TGG | + | chr4_3:71455767-71455786 | None:intergenic | 50.0% | |
| TCTGGGTGTAACCATCATGG+AGG | - | chr4_3:71455856-71455875 | Msa0660570:intron | 50.0% | |
| TCACAAACAGCCTAAAGGGG+TGG | - | chr4_3:71455966-71455985 | Msa0660570:intron | 50.0% | |
| CCATCAGTAACCACCCCTTT+AGG | + | chr4_3:71455979-71455998 | None:intergenic | 50.0% | |
| CCTAAAGGGGTGGTTACTGA+TGG | - | chr4_3:71455976-71455995 | Msa0660570:intron | 50.0% | |
| CGAGTTTATGCCTTCACACC+TGG | + | chr4_3:71456302-71456321 | None:intergenic | 50.0% | |
| AGTGATGTGCTCGTGTCTCA+TGG | + | chr4_3:71456725-71456744 | None:intergenic | 50.0% | |
| !! | ATAAAGAGGCGTCGTGAGAG+TGG | - | chr4_3:71456961-71456980 | Msa0660570:CDS | 50.0% |
| !! | CCTTTGGCCTTGGCTTTGAT+AGG | + | chr4_3:71457024-71457043 | None:intergenic | 50.0% |
| CCTATCAAAGCCAAGGCCAA+AGG | - | chr4_3:71457021-71457040 | Msa0660570:intron | 50.0% | |
| ACATCACGTCCAGCTAGTTC+TGG | + | chr4_3:71457132-71457151 | None:intergenic | 50.0% | |
| TGTCTGCTCGTGGAAATTGG+GGG | + | chr4_3:71457846-71457865 | None:intergenic | 50.0% | |
| GTTTATGGGTGCCTTGGAGA+TGG | - | chr4_3:71458022-71458041 | Msa0660570:CDS | 50.0% | |
| !! | CTTCTTACGAGGGGCACCTT+TGG | + | chr4_3:71457040-71457059 | None:intergenic | 55.0% |
| GATGGGAAGTTGTCTGCTCG+TGG | + | chr4_3:71457856-71457875 | None:intergenic | 55.0% | |
| !! | ACGAGGGGCACCTTTGGCCT+TGG | + | chr4_3:71457034-71457053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71455013 | 71458249 | 71455013 | ID=Msa0660570;Name=Msa0660570 |
| chr4_3 | mRNA | 71455013 | 71458249 | 71455013 | ID=Msa0660570-mRNA-1;Parent=Msa0660570;Name=Msa0660570-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.8|0.66|1|0.8|0.66|6|116|725 |
| chr4_3 | exon | 71455013 | 71455239 | 71455013 | ID=Msa0660570-mRNA-1:exon:21370;Parent=Msa0660570-mRNA-1 |
| chr4_3 | exon | 71455332 | 71455628 | 71455332 | ID=Msa0660570-mRNA-1:exon:21369;Parent=Msa0660570-mRNA-1 |
| chr4_3 | exon | 71455721 | 71455792 | 71455721 | ID=Msa0660570-mRNA-1:exon:21368;Parent=Msa0660570-mRNA-1 |
| chr4_3 | exon | 71455865 | 71455957 | 71455865 | ID=Msa0660570-mRNA-1:exon:21367;Parent=Msa0660570-mRNA-1 |
| chr4_3 | exon | 71456044 | 71457020 | 71456044 | ID=Msa0660570-mRNA-1:exon:21366;Parent=Msa0660570-mRNA-1 |
| chr4_3 | exon | 71457622 | 71458249 | 71457622 | ID=Msa0660570-mRNA-1:exon:21365;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71457622 | 71458249 | 71457622 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71456044 | 71457020 | 71456044 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71455865 | 71455957 | 71455865 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71455721 | 71455792 | 71455721 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71455332 | 71455628 | 71455332 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | CDS | 71455129 | 71455239 | 71455129 | ID=Msa0660570-mRNA-1:cds;Parent=Msa0660570-mRNA-1 |
| chr4_3 | three_prime_UTR | 71455013 | 71455128 | 71455013 | ID=Msa0660570-mRNA-1:three_prime_utr;Parent=Msa0660570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
