AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1392370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392370 MtrunA17_Chr2g0287651 42.037 697 397 2 29 720 63 757 0.0 589
Msa1392370 MtrunA17_Chr1g0203051 35.859 594 364 7 1 580 31 621 4.91e-130 405
Msa1392370 MtrunA17_Chr5g0448761 34.744 567 353 7 44 595 63 627 1.47e-110 359
Msa1392370 MtrunA17_Chr1g0202341 33.449 577 366 8 40 604 50 620 5.32e-98 322
Msa1392370 MtrunA17_Chr2g0296781 31.667 660 427 12 45 686 1 654 3.69e-96 318
Msa1392370 MtrunA17_Chr2g0324011 30.609 575 381 5 44 606 13 581 1.02e-92 305
Msa1392370 MtrunA17_Chr8g0363841 29.493 651 425 12 40 666 16 656 7.63e-88 295
Msa1392370 MtrunA17_Chr5g0441581 32.275 567 349 10 44 593 35 583 1.12e-86 292
Msa1392370 MtrunA17_Chr3g0082121 30.200 649 426 9 1 636 1 635 1.03e-83 284
Msa1392370 MtrunA17_Chr1g0207551 32.379 559 363 10 44 593 37 589 1.07e-83 287
Msa1392370 MtrunA17_Chr6g0477261 32.000 525 339 7 179 687 22 544 6.59e-82 278
Msa1392370 MtrunA17_Chr6g0458391 29.983 577 360 11 34 593 216 765 1.24e-78 272
Msa1392370 MtrunA17_Chr6g0458391 37.391 115 68 3 44 155 94 207 3.10e-14 77.0
Msa1392370 MtrunA17_Chr1g0198761 28.775 702 444 17 44 706 50 734 4.28e-77 267
Msa1392370 MtrunA17_Chr1g0203721 29.260 581 396 10 44 612 66 643 6.63e-75 264
Msa1392370 MtrunA17_Chr1g0196541 29.690 677 413 16 45 686 1 649 9.33e-75 260
Msa1392370 MtrunA17_Chr5g0440451 28.771 643 403 17 44 659 46 660 1.90e-73 260
Msa1392370 MtrunA17_Chr2g0329031 27.778 576 397 11 28 596 1 564 5.15e-72 253
Msa1392370 MtrunA17_Chr3g0118611 30.118 508 341 7 162 661 68 569 5.21e-72 253
Msa1392370 MtrunA17_Chr5g0448511 29.149 470 318 5 205 668 5 465 7.24e-72 248
Msa1392370 MtrunA17_Chr3g0080351 28.110 619 371 12 2 593 52 623 1.41e-71 253
Msa1392370 MtrunA17_Chr2g0287061 28.378 666 400 17 9 655 155 762 4.87e-71 251
Msa1392370 MtrunA17_Chr2g0291591 29.541 501 330 9 22 507 39 531 3.57e-63 224
Msa1392370 MtrunA17_Chr2g0291581 28.319 565 373 12 44 593 74 621 1.08e-62 225
Msa1392370 MtrunA17_Chr5g0431001 31.915 423 266 7 44 446 64 484 1.22e-62 221
Msa1392370 MtrunA17_Chr2g0276841 27.513 567 378 13 44 590 73 626 1.02e-59 217
Msa1392370 MtrunA17_Chr2g0294841 25.578 778 460 20 9 709 14 749 1.10e-58 215
Msa1392370 MtrunA17_Chr2g0290391 25.874 572 380 10 44 588 54 608 1.82e-52 196
Msa1392370 MtrunA17_Chr1g0164591 31.646 316 202 3 115 425 1 307 7.60e-51 182
Msa1392370 MtrunA17_Chr7g0258861 35.125 279 174 3 44 316 13 290 5.33e-48 173
Msa1392370 MtrunA17_Chr2g0308841 31.696 224 153 0 374 597 8 231 3.82e-38 143
Msa1392370 MtrunA17_Chr7g0238821 36.111 108 63 2 45 148 1 106 7.76e-15 71.6
Msa1392370 MtrunA17_Chr1g0149131 30.841 107 69 1 320 421 4 110 4.16e-14 69.7
Msa1392370 MtrunA17_Chr8g0389811 30.252 119 78 1 34 147 77 195 9.61e-13 68.6
Msa1392370 MtrunA17_Chr8g0340801 33.028 109 71 1 147 255 1 107 1.11e-12 65.5
Msa1392370 MtrunA17_Chr2g0329421 35.514 107 67 2 39 143 25 131 1.65e-12 67.8
Msa1392370 MtrunA17_Chr6g0451441 28.511 235 150 7 39 265 80 304 2.20e-12 70.5
Msa1392370 MtrunA17_Chr7g0233911 41.346 104 55 3 44 142 37 139 2.81e-12 67.0
Msa1392370 MtrunA17_Chr1g0171741 30.400 125 75 2 42 158 134 254 4.32e-12 67.4
Msa1392370 MtrunA17_Chr4g0033611 35.000 100 63 2 44 141 79 178 4.98e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392370 AT4G38180.1 34.098 610 385 9 2 597 32 638 2.13e-112 364
Msa1392370 AT4G15090.1 29.402 619 415 11 44 651 54 661 6.86e-84 288
Msa1392370 AT4G15090.5 29.402 619 415 11 44 651 54 661 6.86e-84 288
Msa1392370 AT4G15090.3 29.402 619 415 11 44 651 54 661 6.86e-84 288
Msa1392370 AT4G15090.2 29.402 619 415 11 44 651 54 661 6.86e-84 288
Msa1392370 AT4G15090.4 29.402 619 415 11 44 651 54 661 6.86e-84 288
Msa1392370 AT3G06250.2 28.708 627 390 15 23 641 174 751 1.09e-76 266
Msa1392370 AT3G06250.1 28.708 627 390 15 23 641 174 751 1.09e-76 266
Msa1392370 AT3G06250.3 28.708 627 390 15 23 641 174 751 1.09e-76 266
Msa1392370 AT2G27110.2 29.146 597 382 11 3 593 18 579 4.63e-76 267
Msa1392370 AT2G27110.1 29.146 597 382 11 3 593 18 579 4.63e-76 267
Msa1392370 AT5G18960.2 28.524 603 385 12 44 641 214 775 2.56e-74 261
Msa1392370 AT5G18960.1 28.524 603 385 12 44 641 214 775 2.56e-74 261
Msa1392370 AT3G22170.2 27.288 579 373 8 42 598 71 623 1.03e-70 251
Msa1392370 AT3G22170.1 27.288 579 373 8 42 598 71 623 1.03e-70 251
Msa1392370 AT1G76320.3 27.957 558 381 9 45 594 1 545 3.70e-69 243
Msa1392370 AT1G76320.1 27.957 558 381 9 45 594 1 545 4.15e-69 245
Msa1392370 AT1G76320.4 27.957 558 381 9 45 594 1 545 4.15e-69 245
Msa1392370 AT1G76320.2 27.957 558 381 9 45 594 1 545 4.33e-69 244
Msa1392370 AT2G27110.3 32.398 392 257 3 207 593 46 434 7.66e-67 238
Msa1392370 AT4G19990.6 27.580 591 360 13 44 608 24 572 1.09e-62 227
Msa1392370 AT4G19990.2 27.580 591 360 13 44 608 24 572 1.09e-62 227
Msa1392370 AT4G19990.5 27.580 591 360 13 44 608 24 572 1.37e-62 226
Msa1392370 AT4G19990.3 27.580 591 360 13 44 608 24 572 1.47e-62 226
Msa1392370 AT4G19990.4 27.580 591 360 13 44 608 24 572 1.47e-62 226
Msa1392370 AT4G19990.7 27.580 591 360 13 44 608 38 586 2.55e-62 226
Msa1392370 AT1G80010.1 27.616 583 396 14 44 606 98 674 2.48e-61 223
Msa1392370 AT4G38170.1 29.167 384 261 4 216 593 21 399 2.50e-61 218
Msa1392370 AT1G52520.1 26.871 588 403 10 18 593 66 638 7.84e-61 221
Msa1392370 AT1G10240.2 26.761 568 381 13 44 590 51 604 2.28e-59 216
Msa1392370 AT1G10240.1 26.761 568 381 13 44 590 51 604 2.28e-59 216
Msa1392370 AT4G19990.1 27.027 555 338 12 79 608 3 515 1.45e-57 211
Msa1392370 AT5G28530.3 24.913 574 391 11 44 592 58 616 2.22e-50 190
Msa1392370 AT5G28530.2 24.913 574 391 11 44 592 58 616 2.22e-50 190
Msa1392370 AT5G28530.1 24.653 576 394 11 44 592 58 620 6.78e-50 188
Msa1392370 AT2G32250.8 27.725 422 281 7 225 631 141 553 2.28e-49 188
Msa1392370 AT2G32250.7 27.725 422 281 7 225 631 141 553 2.30e-49 188
Msa1392370 AT2G32250.6 27.316 421 284 6 225 631 182 594 3.28e-49 188
Msa1392370 AT2G32250.1 27.316 421 284 6 225 631 182 594 3.28e-49 188
Msa1392370 AT2G32250.3 27.316 421 284 6 225 631 182 594 3.28e-49 188
Msa1392370 AT2G32250.2 27.316 421 284 6 225 631 182 594 3.28e-49 188
Msa1392370 AT2G32250.4 27.316 421 284 6 225 631 182 594 3.28e-49 188
Msa1392370 AT2G32250.5 27.725 422 281 7 225 631 182 594 3.63e-49 187
Msa1392370 AT5G28530.5 21.416 565 359 13 44 592 58 553 8.53e-31 129
Msa1392370 AT5G28530.4 21.164 567 362 13 44 592 58 557 2.77e-30 128
Msa1392370 AT3G07500.1 36.842 152 82 6 16 157 3 150 3.18e-15 76.3
Msa1392370 AT4G12850.4 37.391 115 67 3 39 152 9 119 6.57e-12 64.7
Msa1392370 AT3G59470.3 32.639 144 88 5 7 143 33 174 6.73e-12 67.4
Msa1392370 AT3G59470.1 32.639 144 88 5 7 143 33 174 6.73e-12 67.4
Msa1392370 AT4G12850.2 39.216 102 60 2 39 139 9 109 7.34e-12 64.3
Msa1392370 AT3G59470.2 35.514 107 67 2 39 143 80 186 7.60e-12 67.4
Msa1392370 AT4G12850.1 36.066 122 73 3 39 156 9 129 4.20e-11 63.5

Find 176 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATAAGTGGAGAGTTTC+TGG 0.119642 tig0021499:+42685 Msa1392370:CDS
GAAAATTCTTCCAAGAATTT+TGG 0.129657 tig0021499:-43408 None:intergenic
TGTTAGAACCTGTCATATTT+TGG 0.145212 tig0021499:+42825 Msa1392370:CDS
GTCTCATGGCACAAATAATA+TGG 0.183652 tig0021499:-44013 None:intergenic
GTAATCATCCTTTGCTGATT+TGG 0.196309 tig0021499:-44084 None:intergenic
CATCTTTCCATGTTACATTT+TGG 0.217563 tig0021499:-44989 None:intergenic
GCAGACACTGTCCTGCAATT+TGG 0.218987 tig0021499:-46013 None:intergenic
AGTTGTCTGCTCGTGGAAAT+TGG 0.230194 tig0021499:-45151 None:intergenic
CGGATTGACTATGAGTGTTT+TGG 0.239812 tig0021499:+43075 Msa1392370:CDS
AAAGTAGATGCAATTTGATT+TGG 0.270824 tig0021499:-45089 None:intergenic
AACTCATTATCATGTCCTTT+TGG 0.270857 tig0021499:+45930 Msa1392370:CDS
CGTTGCATCGTCTTTGTTCA+TGG 0.271391 tig0021499:+43349 Msa1392370:CDS
CAGACACTGTCCTGCAATTT+GGG 0.276633 tig0021499:-46012 None:intergenic
AAAATTGATGCACCTTGATT+TGG 0.276898 tig0021499:-45125 None:intergenic
AAGACCAATCCATCCGTTAT+TGG 0.279284 tig0021499:+44299 Msa1392370:CDS
TGATAAACCCCATGTTAAAA+TGG 0.283256 tig0021499:+44962 Msa1392370:CDS
TCACTCAATTGACGGTTCTT+AGG 0.285255 tig0021499:-42763 None:intergenic
TTGGCGCCTGTAAAATAATT+AGG 0.301126 tig0021499:-45026 None:intergenic
CATTCAAGTTCTGTTGGATA+TGG 0.304475 tig0021499:+45182 Msa1392370:CDS
CCTTTGGCCTTGGCTTTGAT+AGG 0.324333 tig0021499:-44326 None:intergenic
ATACAGGCACAAAGAGTTAA+TGG 0.341245 tig0021499:+43701 Msa1392370:CDS
GTTGTCTGCTCGTGGAAATT+GGG 0.345810 tig0021499:-45150 None:intergenic
ACGAGGGGCACCTTTGGCCT+TGG 0.345904 tig0021499:-44336 None:intergenic
CAAAGACGATGCAACGAGTT+TGG 0.347736 tig0021499:-43342 None:intergenic
TGTGAAGAATCCAAAATTCT+TGG 0.353566 tig0021499:+43398 Msa1392370:CDS
TGAAGAAGGAAAAGAGGATA+TGG 0.353695 tig0021499:+42381 Msa1392370:CDS
TGGATACTTACAAGAAGATT+AGG 0.354642 tig0021499:+42401 Msa1392370:CDS
TCCAACCCGTTATGCTCATT+TGG 0.356553 tig0021499:+42738 Msa1392370:CDS
TGCTGCGTTGAGTTATTTGC+AGG 0.361206 tig0021499:+42960 Msa1392370:CDS
GAAAGGAGGTCATGAGAGTC+TGG 0.365097 tig0021499:+42864 Msa1392370:CDS
ATAGCCTCTTTATAATCATC+TGG 0.369789 tig0021499:-44215 None:intergenic
AGACATAAATGGTGAAGATT+TGG 0.373826 tig0021499:+42336 Msa1392370:CDS
GCAATTTGATTTGGAAATTG+AGG 0.377041 tig0021499:-45080 None:intergenic
TTGCATTTGACGCAACTTAC+AGG 0.378859 tig0021499:+43106 Msa1392370:CDS
CTTCTTACGAGGGGCACCTT+TGG 0.378868 tig0021499:-44342 None:intergenic
AAGATCGGAACACTTTGAAT+TGG 0.379246 tig0021499:-45056 None:intergenic
GACGTTTAGAAAATTTATTT+TGG 0.380943 tig0021499:+43037 Msa1392370:CDS
CCCACAGTTGCCCAAATTGC+AGG 0.386706 tig0021499:+46002 Msa1392370:CDS
GCAAACGATGGAGACATAAA+TGG 0.387588 tig0021499:+42325 Msa1392370:CDS
ACATCACGTCCAGCTAGTTC+TGG 0.392972 tig0021499:-44434 None:intergenic
TGTATCACAAACAGCCTAAA+GGG 0.400943 tig0021499:+43268 Msa1392370:CDS
CCATCAGTAACCACCCCTTT+AGG 0.408261 tig0021499:-43282 None:intergenic
AAGTTTAAGATGAATAGATT+TGG 0.423772 tig0021499:+43894 Msa1392370:CDS
CTGATAGTCTAATTTGCAAA+AGG 0.431391 tig0021499:+44057 Msa1392370:CDS
CGAGTTTATGCCTTCACACC+TGG 0.432567 tig0021499:-43604 None:intergenic
TCTGATAAAGCCCTTGTTGA+TGG 0.437123 tig0021499:+42787 Msa1392370:CDS
TATCAGATTCACTCAATTGA+CGG 0.439464 tig0021499:-42771 None:intergenic
CCATCACATTCAAGTTCTGT+TGG 0.440650 tig0021499:+45176 Msa1392370:CDS
TGTAGACAGTTTGAACGGAT+TGG 0.441359 tig0021499:+43978 Msa1392370:CDS
GAAGATTTGGCCAGCGGTAA+TGG 0.442024 tig0021499:+42349 Msa1392370:CDS
GAAGGAAAGGCAAGAATAGA+AGG 0.447532 tig0021499:+42925 Msa1392370:CDS
CAATTTGGGCAACTGTGGGA+TGG 0.454366 tig0021499:-45998 None:intergenic
AGAAGAAATCATCCAGGAAA+AGG 0.463612 tig0021499:+44363 Msa1392370:CDS
GGATACTTACAAGAAGATTA+GGG 0.465987 tig0021499:+42402 Msa1392370:CDS
ACAATTTATCAGACAATACA+TGG 0.467170 tig0021499:+43499 Msa1392370:CDS
CAAGAAGATTAGGGAATTGA+CGG 0.467663 tig0021499:+42411 Msa1392370:CDS
AGGAACCAAATGAGCATAAC+GGG 0.471013 tig0021499:-42743 None:intergenic
CAATAAAAGAAGATCAAAAC+AGG 0.473627 tig0021499:+44681 Msa1392370:CDS
ATTTATGTCTCCATCGTTTG+CGG 0.473976 tig0021499:-42323 None:intergenic
AAGTTTACCACAACAGAAGA+AGG 0.481519 tig0021499:+43015 Msa1392370:CDS
TAAATGTTGATACTAATAAG+TGG 0.482914 tig0021499:+42674 Msa1392370:CDS
TAAACGTCCTTCTTCTGTTG+TGG 0.486471 tig0021499:-43022 None:intergenic
TGTCAATGTTACTTCAATGC+AGG 0.488636 tig0021499:+44651 Msa1392370:CDS
ATAGAGCTGTAAAAGAATAC+AGG 0.492679 tig0021499:+43685 Msa1392370:CDS
TCTCATGGCACAAATAATAT+GGG 0.494840 tig0021499:-44012 None:intergenic
GGATGATGATATAAGAGGAT+TGG 0.496802 tig0021499:+42432 Msa1392370:CDS
TTGACGGATGATGATATAAG+AGG 0.497315 tig0021499:+42427 Msa1392370:CDS
CTCAATTTCAAATTTGTCCA+CGG 0.497600 tig0021499:-43454 None:intergenic
ATGTATCACAAACAGCCTAA+AGG 0.498446 tig0021499:+43267 Msa1392370:CDS
GAAATCTATGCAGATTGTCA+TGG 0.498853 tig0021499:+42490 Msa1392370:CDS
AAATTATAGTTCCTCCATGA+TGG 0.499164 tig0021499:-43173 None:intergenic
TATAACTACTTATACAATGA+AGG 0.501991 tig0021499:+42907 Msa1392370:CDS
TTGCACTAGATTGAAAATGA+AGG 0.505947 tig0021499:+44766 Msa1392370:intron
ATGATAATGAGTTGGCCTAC+TGG 0.506108 tig0021499:-45920 None:intergenic
TTTGGAAATTGAGGAAAGAT+CGG 0.506335 tig0021499:-45071 None:intergenic
TCCTGCAATTTGGGCAACTG+TGG 0.507825 tig0021499:-46003 None:intergenic
AGGATTGGAATTTGATTCAG+AGG 0.508865 tig0021499:+42447 Msa1392370:CDS
GATGTAAACAAAGATGATGA+TGG 0.508994 tig0021499:+42532 Msa1392370:CDS
TAGATTGAAAATGAAGGGAT+TGG 0.509056 tig0021499:+44772 Msa1392370:intron
ATTAAACACGCCATTACCGC+TGG 0.509907 tig0021499:-42359 None:intergenic
GTATCTAGTTCAGCTTGATA+AGG 0.514742 tig0021499:+43932 Msa1392370:CDS
CAAAACACTCATAGTCAATC+CGG 0.515222 tig0021499:-43074 None:intergenic
AGTCTGATTGATTTCATGCA+TGG 0.520881 tig0021499:+43657 Msa1392370:CDS
AATTTGAAATTGAGTGGAAG+AGG 0.523012 tig0021499:+43463 Msa1392370:CDS
ATCACCAATAACGGATGGAT+TGG 0.524490 tig0021499:-44303 None:intergenic
AGATGATTATAAAGAGGCTA+TGG 0.524840 tig0021499:+44217 Msa1392370:CDS
AAAAGCCAATCTCATCCAAA+AGG 0.525339 tig0021499:-45945 None:intergenic
TTGTCTGCTCGTGGAAATTG+GGG 0.529245 tig0021499:-45149 None:intergenic
AGAAACAAAGTACATATTCG+AGG 0.529955 tig0021499:+42608 Msa1392370:CDS
ACTTTGAATTGGAACACCGT+TGG 0.530199 tig0021499:-45045 None:intergenic
AGTGATGTGCTCGTGTCTCA+TGG 0.530669 tig0021499:-44027 None:intergenic
TGCAGATTGTCATGGGTTTG+TGG 0.531824 tig0021499:+42498 Msa1392370:CDS
GGGCAACTGTGGGATGGGTG+AGG 0.532080 tig0021499:-45992 None:intergenic
AAATCTATGCAGATTGTCAT+GGG 0.533515 tig0021499:+42491 Msa1392370:CDS
ATAGTCTAATTTGCAAAAGG+TGG 0.533689 tig0021499:+44060 Msa1392370:CDS
GAAAGGCAAGAATAGAAGGT+GGG 0.534127 tig0021499:+42929 Msa1392370:CDS
CAACAGAACTTGAATGTGAT+GGG 0.534436 tig0021499:-45175 None:intergenic
CAAAATGTAACATGGAAAGA+TGG 0.535009 tig0021499:+44990 Msa1392370:CDS
CCAACAGAACTTGAATGTGA+TGG 0.535015 tig0021499:-45176 None:intergenic
ATTTAAATGGCCGCAAACGA+TGG 0.539363 tig0021499:+42313 None:intergenic
TGCAGAACACTTAGTTCGAA+TGG 0.539821 tig0021499:-42635 None:intergenic
AATTTGGGCAACTGTGGGAT+GGG 0.541935 tig0021499:-45997 None:intergenic
TGCACTAGATTGAAAATGAA+GGG 0.542557 tig0021499:+44767 Msa1392370:intron
GTGGCATAAGAACTACATCC+AGG 0.542673 tig0021499:+43586 Msa1392370:CDS
TGGACAAATTTGAAATTGAG+TGG 0.544484 tig0021499:+43457 Msa1392370:CDS
TAGGAACCAAATGAGCATAA+CGG 0.549503 tig0021499:-42744 None:intergenic
CATAAAACCCAAAATATGAC+AGG 0.552239 tig0021499:-42833 None:intergenic
ACACCCAGATGATTATAAAG+AGG 0.558171 tig0021499:+44211 Msa1392370:CDS
AATGGCGTGTTTAATGAAGA+AGG 0.560249 tig0021499:+42367 Msa1392370:CDS
AATGTCCAGAGTCAAGATCA+AGG 0.560616 tig0021499:+44930 Msa1392370:intron
TTTGATAGGATCACCAATAA+CGG 0.561695 tig0021499:-44312 None:intergenic
AAAAGGACATGATAATGAGT+TGG 0.562000 tig0021499:-45928 None:intergenic
AAAGGCAAGAATAGAAGGTG+GGG 0.563747 tig0021499:+42930 Msa1392370:CDS
CCTGCAATTTGGGCAACTGT+GGG 0.564136 tig0021499:-46002 None:intergenic
ATGATTTCTTCTTCTTACGA+GGG 0.564434 tig0021499:-44352 None:intergenic
TGATTATAAAGAGGCTATGG+AGG 0.565059 tig0021499:+44220 Msa1392370:CDS
GTTTAATGAAGAAGGAAAAG+AGG 0.565717 tig0021499:+42375 Msa1392370:CDS
CAAAACTGTCCAGAACTAGC+TGG 0.566062 tig0021499:+44425 Msa1392370:CDS
TGTAACTTTGTTGTCAACAC+AGG 0.566833 tig0021499:-43750 None:intergenic
GATGATTTCTTCTTCTTACG+AGG 0.568426 tig0021499:-44353 None:intergenic
TAGCCTCTTTATAATCATCT+GGG 0.570856 tig0021499:-44214 None:intergenic
TCTAAATGAAGTCAATGAAG+AGG 0.571099 tig0021499:+44457 Msa1392370:CDS
GTAAACTTCGAAAAGAACAT+TGG 0.573497 tig0021499:-43000 None:intergenic
ATTTGAAATTGAGTGGAAGA+GGG 0.577779 tig0021499:+43464 Msa1392370:CDS
ATAGGATCACCAATAACGGA+TGG 0.579076 tig0021499:-44308 None:intergenic
AACGGGTTGGAGTTAACTCA+TGG 0.579913 tig0021499:-42726 None:intergenic
CTACTTATACAATGAAGGAA+AGG 0.581665 tig0021499:+42912 Msa1392370:CDS
CCTAAAGGGGTGGTTACTGA+TGG 0.583557 tig0021499:+43282 Msa1392370:CDS
ATGTAAACAAAGATGATGAT+GGG 0.584402 tig0021499:+42533 Msa1392370:CDS
GTGATTGTAGACAGTTTGAA+CGG 0.585179 tig0021499:+43973 Msa1392370:CDS
GTTGATGGTCTTCACGCACA+CGG 0.587234 tig0021499:+42802 Msa1392370:CDS
AGTTAACTCATGGTTGTGTG+AGG 0.591294 tig0021499:-42716 None:intergenic
GATTATAAAGAGGCTATGGA+GGG 0.593735 tig0021499:+44221 Msa1392370:CDS
GGAAAGGCAAGAATAGAAGG+TGG 0.594681 tig0021499:+42928 Msa1392370:CDS
ACCAAATGAGCATAACGGGT+TGG 0.596668 tig0021499:-42739 None:intergenic
AGAACTACATCCAGGTGTGA+AGG 0.599918 tig0021499:+43594 Msa1392370:CDS
TCGATTAGTATGTAATAGAG+AGG 0.600970 tig0021499:+42570 Msa1392370:CDS
ATAAAGAGGCGTCGTGAGAG+TGG 0.603066 tig0021499:+44266 Msa1392370:CDS
ACACTCATAGTCAATCCGGC+TGG 0.606173 tig0021499:-43070 None:intergenic
GTTTGTGTGAGAAAATAAAG+AGG 0.607012 tig0021499:+44252 Msa1392370:CDS
TTTGGTCGGATTCAACCAGC+CGG 0.607373 tig0021499:+43055 Msa1392370:CDS
TGTTGACAACAAAGTTACAC+AGG 0.607980 tig0021499:+43754 Msa1392370:CDS
CCTATCAAAGCCAAGGCCAA+AGG 0.609665 tig0021499:+44326 Msa1392370:CDS
TTTATGATGGCTCAGAAAGG+AGG 0.609928 tig0021499:+42850 Msa1392370:CDS
AAAGGAGGTCATGAGAGTCT+GGG 0.612373 tig0021499:+42865 Msa1392370:CDS
TGGAAGACCAAAATGTAACA+TGG 0.612794 tig0021499:+44982 Msa1392370:CDS
GTGTTGATAAGAGTTGTGAC+AGG 0.616075 tig0021499:+44611 Msa1392370:CDS
TACTCACAGGTGTATGATGA+GGG 0.616777 tig0021499:-45220 None:intergenic
TGGTGATCCTATCAAAGCCA+AGG 0.618217 tig0021499:+44319 Msa1392370:CDS
GATGGGAAGTTGTCTGCTCG+TGG 0.621816 tig0021499:-45158 None:intergenic
GTAAGAAGAAGAAATCATCC+AGG 0.628639 tig0021499:+44357 Msa1392370:CDS
GTTAACTCATGGTTGTGTGA+GGG 0.630795 tig0021499:-42715 None:intergenic
TGATTTCTTCTTCTTACGAG+GGG 0.631063 tig0021499:-44351 None:intergenic
CATATGAGATGAAGACAATG+TGG 0.635222 tig0021499:+43532 Msa1392370:CDS
GTGCGTGAAGACCATCAACA+AGG 0.635936 tig0021499:-42798 None:intergenic
CGATTAGTATGTAATAGAGA+GGG 0.642038 tig0021499:+42571 Msa1392370:CDS
GCACAAATAATATGGGAACA+TGG 0.643217 tig0021499:-44005 None:intergenic
ATACTCACAGGTGTATGATG+AGG 0.644284 tig0021499:-45221 None:intergenic
AAGGTGGACCAAATCAGCAA+AGG 0.645642 tig0021499:+44076 Msa1392370:CDS
GATTTATGCTAATTATACCG+TGG 0.646515 tig0021499:+43437 Msa1392370:CDS
CAATTTATCAGACAATACAT+GGG 0.647591 tig0021499:+43500 Msa1392370:CDS
AATGAGAGAAGCTATCAAAG+AGG 0.650952 tig0021499:+43314 Msa1392370:CDS
ATTATAAAGAGGCTATGGAG+GGG 0.655805 tig0021499:+44222 Msa1392370:CDS
TTCGAACTAAGTGTTCTGCA+AGG 0.661356 tig0021499:+42638 Msa1392370:CDS
GTATCACAAACAGCCTAAAG+GGG 0.665924 tig0021499:+43269 Msa1392370:CDS
CAGTAGACATAGTTCCTCGA+CGG 0.666039 tig0021499:-44157 None:intergenic
TATGTTCTCAGGGTACCAGT+AGG 0.668100 tig0021499:+45905 Msa1392370:intron
ATATGAGATGAAGACAATGT+GGG 0.670288 tig0021499:+43533 Msa1392370:CDS
TGCGTGAAGACCATCAACAA+GGG 0.673392 tig0021499:-42797 None:intergenic
ATAATTAGCATAAATCAATG+AGG 0.681924 tig0021499:-43430 None:intergenic
AATGGTGAAGATTTGGCCAG+CGG 0.682068 tig0021499:+42343 Msa1392370:CDS
TCACAAACAGCCTAAAGGGG+TGG 0.683003 tig0021499:+43272 Msa1392370:CDS
TCTGGGTGTAACCATCATGG+AGG 0.690656 tig0021499:+43162 Msa1392370:CDS
AAAATGTTCATGTTCCGTCG+AGG 0.700917 tig0021499:+44143 Msa1392370:CDS
AAACACGTGAGACATACAAG+TGG 0.704359 tig0021499:+43220 Msa1392370:CDS
TGTCTGCTCGTGGAAATTGG+GGG 0.731356 tig0021499:-45148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTAATTTTATTGAATAAT+AGG + tig0021499:45789-45808 Msa1392370:intron 10.0%
!!! TTTAGAAAATTTATTTTGGT+CGG + tig0021499:43041-43060 Msa1392370:CDS 15.0%
!! AAACAACAAAAATAAACAAT+TGG - tig0021499:45508-45527 None:intergenic 15.0%
!!! TTGTTTATTTTTGTTGTTTT+AGG + tig0021499:45509-45528 Msa1392370:intron 15.0%
!! TAAATGTTGATACTAATAAG+TGG + tig0021499:42674-42693 Msa1392370:CDS 20.0%
!! TATAACTACTTATACAATGA+AGG + tig0021499:42907-42926 Msa1392370:CDS 20.0%
!!! GACGTTTAGAAAATTTATTT+TGG + tig0021499:43037-43056 Msa1392370:CDS 20.0%
!! ATAATTAGCATAAATCAATG+AGG - tig0021499:43433-43452 None:intergenic 20.0%
!!! AAGTTTAAGATGAATAGATT+TGG + tig0021499:43894-43913 Msa1392370:CDS 20.0%
!!! TAATTATAATTTGTTTGCAC+AGG + tig0021499:44588-44607 Msa1392370:intron 20.0%
!!! AATTATAATTTGTTTGCACA+GGG + tig0021499:44589-44608 Msa1392370:intron 20.0%
!!! TATGTTCCTAATTATTTTAC+AGG + tig0021499:45020-45039 Msa1392370:CDS 20.0%
!!! TCTCTATTTATGTTAGTTTA+TGG + tig0021499:45312-45331 Msa1392370:intron 20.0%
!!! CTCTATTTATGTTAGTTTAT+GGG + tig0021499:45313-45332 Msa1392370:intron 20.0%
!! AAAAATGTCAAAACAAACAT+TGG - tig0021499:45480-45499 None:intergenic 20.0%
!!! TTAGAGTATTTAAAGTTTGA+AGG + tig0021499:45653-45672 Msa1392370:intron 20.0%
! ATGTAAACAAAGATGATGAT+GGG + tig0021499:42533-42552 Msa1392370:CDS 25.0%
!!! TCATATTTTGGGTTTTATGA+TGG + tig0021499:42837-42856 Msa1392370:CDS 25.0%
!! GAAAATTCTTCCAAGAATTT+TGG - tig0021499:43411-43430 None:intergenic 25.0%
! ACAATTTATCAGACAATACA+TGG + tig0021499:43499-43518 Msa1392370:CDS 25.0%
! CAATTTATCAGACAATACAT+GGG + tig0021499:43500-43519 Msa1392370:CDS 25.0%
! CAATAAAAGAAGATCAAAAC+AGG + tig0021499:44681-44700 Msa1392370:CDS 25.0%
!!! AAGATACTTGATACTTTTTG+TGG + tig0021499:44710-44729 Msa1392370:intron 25.0%
!! TTATCTGTCATGTTTTCATT+AGG - tig0021499:44802-44821 None:intergenic 25.0%
! AGTAGTTTCTCATAGTTAAT+TGG + tig0021499:44850-44869 Msa1392370:intron 25.0%
! AAAGTAGATGCAATTTGATT+TGG - tig0021499:45092-45111 None:intergenic 25.0%
! AAAATGGATAAGAATACATG+TGG + tig0021499:45361-45380 Msa1392370:intron 25.0%
! ACTCAAAATTATCATCACTT+TGG - tig0021499:45433-45452 None:intergenic 25.0%
! AAAACAAACATTGGAACAAA+TGG - tig0021499:45471-45490 None:intergenic 25.0%
! AACTAATTGAAAGTAACTTC+AGG - tig0021499:45679-45698 None:intergenic 25.0%
!!! TAATAGGTTTGTTAACCATA+TGG + tig0021499:45805-45824 Msa1392370:intron 25.0%
! CACAACTAAATTAAGTATCA+TGG - tig0021499:45881-45900 None:intergenic 25.0%
AGACATAAATGGTGAAGATT+TGG + tig0021499:42336-42355 Msa1392370:CDS 30.0%
GTTTAATGAAGAAGGAAAAG+AGG + tig0021499:42375-42394 Msa1392370:CDS 30.0%
TGGATACTTACAAGAAGATT+AGG + tig0021499:42401-42420 Msa1392370:CDS 30.0%
GGATACTTACAAGAAGATTA+GGG + tig0021499:42402-42421 Msa1392370:CDS 30.0%
AAATCTATGCAGATTGTCAT+GGG + tig0021499:42491-42510 Msa1392370:CDS 30.0%
GATGTAAACAAAGATGATGA+TGG + tig0021499:42532-42551 Msa1392370:CDS 30.0%
TCGATTAGTATGTAATAGAG+AGG + tig0021499:42570-42589 Msa1392370:CDS 30.0%
CGATTAGTATGTAATAGAGA+GGG + tig0021499:42571-42590 Msa1392370:CDS 30.0%
AGAAACAAAGTACATATTCG+AGG + tig0021499:42608-42627 Msa1392370:CDS 30.0%
TATCAGATTCACTCAATTGA+CGG - tig0021499:42774-42793 None:intergenic 30.0%
! TGTTAGAACCTGTCATATTT+TGG + tig0021499:42825-42844 Msa1392370:CDS 30.0%
! GTTAGAACCTGTCATATTTT+GGG + tig0021499:42826-42845 Msa1392370:CDS 30.0%
CATAAAACCCAAAATATGAC+AGG - tig0021499:42836-42855 None:intergenic 30.0%
CTACTTATACAATGAAGGAA+AGG + tig0021499:42912-42931 Msa1392370:CDS 30.0%
GTAAACTTCGAAAAGAACAT+TGG - tig0021499:43003-43022 None:intergenic 30.0%
!!! AAGCCTCTTGTTATTTTTTC+TGG + tig0021499:43144-43163 Msa1392370:CDS 30.0%
!!! AGCCTCTTGTTATTTTTTCT+GGG + tig0021499:43145-43164 Msa1392370:CDS 30.0%
AAATTATAGTTCCTCCATGA+TGG - tig0021499:43176-43195 None:intergenic 30.0%
! CATGGAGGAACTATAATTTT+TGG + tig0021499:43177-43196 Msa1392370:CDS 30.0%
TGTGAAGAATCCAAAATTCT+TGG + tig0021499:43398-43417 Msa1392370:CDS 30.0%
GATTTATGCTAATTATACCG+TGG + tig0021499:43437-43456 Msa1392370:CDS 30.0%
CTCAATTTCAAATTTGTCCA+CGG - tig0021499:43457-43476 None:intergenic 30.0%
! TGGACAAATTTGAAATTGAG+TGG + tig0021499:43457-43476 Msa1392370:CDS 30.0%
! AATTTGAAATTGAGTGGAAG+AGG + tig0021499:43463-43482 Msa1392370:CDS 30.0%
! ATTTGAAATTGAGTGGAAGA+GGG + tig0021499:43464-43483 Msa1392370:CDS 30.0%
ATATGAGATGAAGACAATGT+GGG + tig0021499:43533-43552 Msa1392370:CDS 30.0%
!!! ATGCGAGAAAACTTTTTTTG+TGG + tig0021499:43567-43586 Msa1392370:CDS 30.0%
ATAGAGCTGTAAAAGAATAC+AGG + tig0021499:43685-43704 Msa1392370:CDS 30.0%
AAGCTTCAAAAATCTTTACG+AGG + tig0021499:43787-43806 Msa1392370:CDS 30.0%
TCTCATGGCACAAATAATAT+GGG - tig0021499:44015-44034 None:intergenic 30.0%
! CTTTTGCAAATTAGACTATC+AGG - tig0021499:44059-44078 None:intergenic 30.0%
! CTGATAGTCTAATTTGCAAA+AGG + tig0021499:44057-44076 Msa1392370:CDS 30.0%
! ATAGTCTAATTTGCAAAAGG+TGG + tig0021499:44060-44079 Msa1392370:CDS 30.0%
TAGCCTCTTTATAATCATCT+GGG - tig0021499:44217-44236 None:intergenic 30.0%
ATAGCCTCTTTATAATCATC+TGG - tig0021499:44218-44237 None:intergenic 30.0%
AGATGATTATAAAGAGGCTA+TGG + tig0021499:44217-44236 Msa1392370:CDS 30.0%
GTTTGTGTGAGAAAATAAAG+AGG + tig0021499:44252-44271 Msa1392370:CDS 30.0%
TTTGATAGGATCACCAATAA+CGG - tig0021499:44315-44334 None:intergenic 30.0%
ATGATTTCTTCTTCTTACGA+GGG - tig0021499:44355-44374 None:intergenic 30.0%
TCTAAATGAAGTCAATGAAG+AGG + tig0021499:44457-44476 Msa1392370:CDS 30.0%
CAAAAACACATTTAACACGA+TGG - tig0021499:44538-44557 None:intergenic 30.0%
TTGCACTAGATTGAAAATGA+AGG + tig0021499:44766-44785 Msa1392370:intron 30.0%
TGCACTAGATTGAAAATGAA+GGG + tig0021499:44767-44786 Msa1392370:intron 30.0%
TAGATTGAAAATGAAGGGAT+TGG + tig0021499:44772-44791 Msa1392370:intron 30.0%
TGATAAACCCCATGTTAAAA+TGG + tig0021499:44962-44981 Msa1392370:CDS 30.0%
!! TTGGTCTTCCATTTTAACAT+GGG - tig0021499:44973-44992 None:intergenic 30.0%
!! TTTGGTCTTCCATTTTAACA+TGG - tig0021499:44974-44993 None:intergenic 30.0%
! CATCTTTCCATGTTACATTT+TGG - tig0021499:44992-45011 None:intergenic 30.0%
CAAAATGTAACATGGAAAGA+TGG + tig0021499:44990-45009 Msa1392370:CDS 30.0%
TTTGGAAATTGAGGAAAGAT+CGG - tig0021499:45074-45093 None:intergenic 30.0%
!! GCAATTTGATTTGGAAATTG+AGG - tig0021499:45083-45102 None:intergenic 30.0%
!! CCTTGATTTGGAAAAAATTG+TGG - tig0021499:45116-45135 None:intergenic 30.0%
!!! CCACAATTTTTTCCAAATCA+AGG + tig0021499:45113-45132 Msa1392370:CDS 30.0%
AAAATTGATGCACCTTGATT+TGG - tig0021499:45128-45147 None:intergenic 30.0%
!! ATAATTTTGAGTCGTGCAAA+AGG + tig0021499:45441-45460 Msa1392370:intron 30.0%
CAACAGTTAAAGCAACAAAT+AGG - tig0021499:45550-45569 None:intergenic 30.0%
TAACTGTTGAAAATCATGAG+TGG + tig0021499:45561-45580 Msa1392370:intron 30.0%
CACTATCATTTCAATCATCA+AGG - tig0021499:45627-45646 None:intergenic 30.0%
ATTGAATCAGTTTAAGCCAT+TGG + tig0021499:45717-45736 Msa1392370:intron 30.0%
ACTGCAATTATCTATTCCAA+TGG - tig0021499:45736-45755 None:intergenic 30.0%
GATTGCAAATGAAAACCATA+TGG - tig0021499:45823-45842 None:intergenic 30.0%
AGTTGTGAAAATATGTTCTC+AGG + tig0021499:45894-45913 Msa1392370:intron 30.0%
GTTGTGAAAATATGTTCTCA+GGG + tig0021499:45895-45914 Msa1392370:intron 30.0%
! AAAAGGACATGATAATGAGT+TGG - tig0021499:45931-45950 None:intergenic 30.0%
! AACTCATTATCATGTCCTTT+TGG + tig0021499:45930-45949 Msa1392370:CDS 30.0%
ATTTATGTCTCCATCGTTTG+CGG - tig0021499:42326-42345 None:intergenic 35.0%
AATGGCGTGTTTAATGAAGA+AGG + tig0021499:42367-42386 Msa1392370:CDS 35.0%
TGAAGAAGGAAAAGAGGATA+TGG + tig0021499:42381-42400 Msa1392370:CDS 35.0%
CAAGAAGATTAGGGAATTGA+CGG + tig0021499:42411-42430 Msa1392370:CDS 35.0%
! TTGACGGATGATGATATAAG+AGG + tig0021499:42427-42446 Msa1392370:CDS 35.0%
GGATGATGATATAAGAGGAT+TGG + tig0021499:42432-42451 Msa1392370:CDS 35.0%
AGGATTGGAATTTGATTCAG+AGG + tig0021499:42447-42466 Msa1392370:CDS 35.0%
GAAATCTATGCAGATTGTCA+TGG + tig0021499:42490-42509 Msa1392370:CDS 35.0%
ACTAATAAGTGGAGAGTTTC+TGG + tig0021499:42685-42704 Msa1392370:CDS 35.0%
TAGGAACCAAATGAGCATAA+CGG - tig0021499:42747-42766 None:intergenic 35.0%
AAGTTTACCACAACAGAAGA+AGG + tig0021499:43015-43034 Msa1392370:CDS 35.0%
CAAAACACTCATAGTCAATC+CGG - tig0021499:43077-43096 None:intergenic 35.0%
! GGATTGACTATGAGTGTTTT+GGG + tig0021499:43076-43095 Msa1392370:CDS 35.0%
! GATTGACTATGAGTGTTTTG+GGG + tig0021499:43077-43096 Msa1392370:CDS 35.0%
CACCCAGAAAAAATAACAAG+AGG - tig0021499:43150-43169 None:intergenic 35.0%
ATGTATCACAAACAGCCTAA+AGG + tig0021499:43267-43286 Msa1392370:CDS 35.0%
TGTATCACAAACAGCCTAAA+GGG + tig0021499:43268-43287 Msa1392370:CDS 35.0%
AATGAGAGAAGCTATCAAAG+AGG + tig0021499:43314-43333 Msa1392370:CDS 35.0%
CATATGAGATGAAGACAATG+TGG + tig0021499:43532-43551 Msa1392370:CDS 35.0%
! AGTCTGATTGATTTCATGCA+TGG + tig0021499:43657-43676 Msa1392370:CDS 35.0%
ATACAGGCACAAAGAGTTAA+TGG + tig0021499:43701-43720 Msa1392370:CDS 35.0%
! TGTAACTTTGTTGTCAACAC+AGG - tig0021499:43753-43772 None:intergenic 35.0%
TGTTGACAACAAAGTTACAC+AGG + tig0021499:43754-43773 Msa1392370:CDS 35.0%
! GTATCTAGTTCAGCTTGATA+AGG + tig0021499:43932-43951 Msa1392370:CDS 35.0%
GTGATTGTAGACAGTTTGAA+CGG + tig0021499:43973-43992 Msa1392370:CDS 35.0%
GCACAAATAATATGGGAACA+TGG - tig0021499:44008-44027 None:intergenic 35.0%
GTCTCATGGCACAAATAATA+TGG - tig0021499:44016-44035 None:intergenic 35.0%
! GTAATCATCCTTTGCTGATT+TGG - tig0021499:44087-44106 None:intergenic 35.0%
ACACCCAGATGATTATAAAG+AGG + tig0021499:44211-44230 Msa1392370:CDS 35.0%
TGATTATAAAGAGGCTATGG+AGG + tig0021499:44220-44239 Msa1392370:CDS 35.0%
GATTATAAAGAGGCTATGGA+GGG + tig0021499:44221-44240 Msa1392370:CDS 35.0%
ATTATAAAGAGGCTATGGAG+GGG + tig0021499:44222-44241 Msa1392370:CDS 35.0%
TGATTTCTTCTTCTTACGAG+GGG - tig0021499:44354-44373 None:intergenic 35.0%
GATGATTTCTTCTTCTTACG+AGG - tig0021499:44356-44375 None:intergenic 35.0%
GTAAGAAGAAGAAATCATCC+AGG + tig0021499:44357-44376 Msa1392370:CDS 35.0%
AGAAGAAATCATCCAGGAAA+AGG + tig0021499:44363-44382 Msa1392370:CDS 35.0%
! TGTCAATGTTACTTCAATGC+AGG + tig0021499:44651-44670 Msa1392370:CDS 35.0%
ACAGATAAAAACATGCACAC+AGG + tig0021499:44814-44833 Msa1392370:CDS 35.0%
!! TGGTCTTCCATTTTAACATG+GGG - tig0021499:44972-44991 None:intergenic 35.0%
TGGAAGACCAAAATGTAACA+TGG + tig0021499:44982-45001 Msa1392370:CDS 35.0%
TTGGCGCCTGTAAAATAATT+AGG - tig0021499:45029-45048 None:intergenic 35.0%
!! AATTATTTTACAGGCGCCAA+CGG + tig0021499:45029-45048 Msa1392370:CDS 35.0%
AAGATCGGAACACTTTGAAT+TGG - tig0021499:45059-45078 None:intergenic 35.0%
CAACAGAACTTGAATGTGAT+GGG - tig0021499:45178-45197 None:intergenic 35.0%
! CATTCAAGTTCTGTTGGATA+TGG + tig0021499:45182-45201 Msa1392370:CDS 35.0%
TGAATGTTGTGTATACTCAC+AGG - tig0021499:45236-45255 None:intergenic 35.0%
GATGGAACGATTAGCAAAAA+TGG + tig0021499:45345-45364 Msa1392370:intron 35.0%
! CTTTTTGCGTGCAATTATCA+CGG + tig0021499:45843-45862 Msa1392370:intron 35.0%
AAAAGCCAATCTCATCCAAA+AGG - tig0021499:45948-45967 None:intergenic 35.0%
GCAAACGATGGAGACATAAA+TGG + tig0021499:42325-42344 Msa1392370:CDS 40.0%
TGCAGAACACTTAGTTCGAA+TGG - tig0021499:42638-42657 None:intergenic 40.0%
TTCGAACTAAGTGTTCTGCA+AGG + tig0021499:42638-42657 Msa1392370:CDS 40.0%
GTTAACTCATGGTTGTGTGA+GGG - tig0021499:42718-42737 None:intergenic 40.0%
AGTTAACTCATGGTTGTGTG+AGG - tig0021499:42719-42738 None:intergenic 40.0%
AGGAACCAAATGAGCATAAC+GGG - tig0021499:42746-42765 None:intergenic 40.0%
TCACTCAATTGACGGTTCTT+AGG - tig0021499:42766-42785 None:intergenic 40.0%
TCTGATAAAGCCCTTGTTGA+TGG + tig0021499:42787-42806 Msa1392370:CDS 40.0%
!! GGTTTTATGATGGCTCAGAA+AGG + tig0021499:42847-42866 Msa1392370:CDS 40.0%
TTTATGATGGCTCAGAAAGG+AGG + tig0021499:42850-42869 Msa1392370:CDS 40.0%
GAAGGAAAGGCAAGAATAGA+AGG + tig0021499:42925-42944 Msa1392370:CDS 40.0%
GAAAGGCAAGAATAGAAGGT+GGG + tig0021499:42929-42948 Msa1392370:CDS 40.0%
AAAGGCAAGAATAGAAGGTG+GGG + tig0021499:42930-42949 Msa1392370:CDS 40.0%
TAAACGTCCTTCTTCTGTTG+TGG - tig0021499:43025-43044 None:intergenic 40.0%
! CGGATTGACTATGAGTGTTT+TGG + tig0021499:43075-43094 Msa1392370:CDS 40.0%
TTGCATTTGACGCAACTTAC+AGG + tig0021499:43106-43125 Msa1392370:CDS 40.0%
! TTTTCTGGGTGTAACCATCA+TGG + tig0021499:43159-43178 Msa1392370:CDS 40.0%
AAACACGTGAGACATACAAG+TGG + tig0021499:43220-43239 Msa1392370:CDS 40.0%
GTATCACAAACAGCCTAAAG+GGG + tig0021499:43269-43288 Msa1392370:CDS 40.0%
!! GTTTTTGAGCAGTCTAGTCT+CGG + tig0021499:43861-43880 Msa1392370:CDS 40.0%
TGTAGACAGTTTGAACGGAT+TGG + tig0021499:43978-43997 Msa1392370:CDS 40.0%
AAAATGTTCATGTTCCGTCG+AGG + tig0021499:44143-44162 Msa1392370:CDS 40.0%
AAGACCAATCCATCCGTTAT+TGG + tig0021499:44299-44318 Msa1392370:CDS 40.0%
!! ATCACCAATAACGGATGGAT+TGG - tig0021499:44306-44325 None:intergenic 40.0%
! ATAGGATCACCAATAACGGA+TGG - tig0021499:44311-44330 None:intergenic 40.0%
! AGAACAATGTCTCCTTTTCC+TGG - tig0021499:44378-44397 None:intergenic 40.0%
TCTGACCATGACAAAAACGT+TGG + tig0021499:44494-44513 Msa1392370:CDS 40.0%
! CACATCCAACGTTTTTGTCA+TGG - tig0021499:44502-44521 None:intergenic 40.0%
TGACAAAAACGTTGGATGTG+AGG + tig0021499:44502-44521 Msa1392370:CDS 40.0%
! GTGTTGATAAGAGTTGTGAC+AGG + tig0021499:44611-44630 Msa1392370:CDS 40.0%
AATGTCCAGAGTCAAGATCA+AGG + tig0021499:44930-44949 Msa1392370:intron 40.0%
ACTTTGAATTGGAACACCGT+TGG - tig0021499:45048-45067 None:intergenic 40.0%
CCAACAGAACTTGAATGTGA+TGG - tig0021499:45179-45198 None:intergenic 40.0%
! CCATCACATTCAAGTTCTGT+TGG + tig0021499:45176-45195 Msa1392370:CDS 40.0%
TACTCACAGGTGTATGATGA+GGG - tig0021499:45223-45242 None:intergenic 40.0%
ATACTCACAGGTGTATGATG+AGG - tig0021499:45224-45243 None:intergenic 40.0%
! ATGTTAGTTTATGGGTGCCT+TGG + tig0021499:45321-45340 Msa1392370:intron 40.0%
TTGCTTGTGATTCGAGAGTT+TGG - tig0021499:45398-45417 None:intergenic 40.0%
AACTCTCGAATCACAAGCAA+TGG + tig0021499:45398-45417 Msa1392370:intron 40.0%
ACTCTCGAATCACAAGCAAT+GGG + tig0021499:45399-45418 Msa1392370:intron 40.0%
CGTGATAATTGCACGCAAAA+AGG - tig0021499:45845-45864 None:intergenic 40.0%
! ATGATAATGAGTTGGCCTAC+TGG - tig0021499:45923-45942 None:intergenic 40.0%
! CATGTCCTTTTGGATGAGAT+TGG + tig0021499:45940-45959 Msa1392370:CDS 40.0%
!!! TTGGATGAGATTGGCTTTTC+TGG + tig0021499:45949-45968 Msa1392370:CDS 40.0%
AATGGTGAAGATTTGGCCAG+CGG + tig0021499:42343-42362 Msa1392370:CDS 45.0%
ATTAAACACGCCATTACCGC+TGG - tig0021499:42362-42381 None:intergenic 45.0%
TGCAGATTGTCATGGGTTTG+TGG + tig0021499:42498-42517 Msa1392370:CDS 45.0%
!! AACGGGTTGGAGTTAACTCA+TGG - tig0021499:42729-42748 None:intergenic 45.0%
TCCAACCCGTTATGCTCATT+TGG + tig0021499:42738-42757 Msa1392370:CDS 45.0%
!! ACCAAATGAGCATAACGGGT+TGG - tig0021499:42742-42761 None:intergenic 45.0%
TGCGTGAAGACCATCAACAA+GGG - tig0021499:42800-42819 None:intergenic 45.0%
AAAGGAGGTCATGAGAGTCT+GGG + tig0021499:42865-42884 Msa1392370:CDS 45.0%
!! ATGAGAGTCTGGGATTTTGC+AGG + tig0021499:42875-42894 Msa1392370:CDS 45.0%
GGAAAGGCAAGAATAGAAGG+TGG + tig0021499:42928-42947 Msa1392370:CDS 45.0%
TGCTGCGTTGAGTTATTTGC+AGG + tig0021499:42960-42979 Msa1392370:CDS 45.0%
!!! CTATGAGTGTTTTGGGGATG+TGG + tig0021499:43083-43102 Msa1392370:CDS 45.0%
CAAAGACGATGCAACGAGTT+TGG - tig0021499:43345-43364 None:intergenic 45.0%
CGTTGCATCGTCTTTGTTCA+TGG + tig0021499:43349-43368 Msa1392370:CDS 45.0%
GTGGCATAAGAACTACATCC+AGG + tig0021499:43586-43605 Msa1392370:CDS 45.0%
AGAACTACATCCAGGTGTGA+AGG + tig0021499:43594-43613 Msa1392370:CDS 45.0%
AAGGTGGACCAAATCAGCAA+AGG + tig0021499:44076-44095 Msa1392370:CDS 45.0%
CAGTAGACATAGTTCCTCGA+CGG - tig0021499:44160-44179 None:intergenic 45.0%
TGGTGATCCTATCAAAGCCA+AGG + tig0021499:44319-44338 Msa1392370:CDS 45.0%
CAAAACTGTCCAGAACTAGC+TGG + tig0021499:44425-44444 Msa1392370:CDS 45.0%
CATCACCTTGATCTTGACTC+TGG - tig0021499:44938-44957 None:intergenic 45.0%
TTGTCTGCTCGTGGAAATTG+GGG - tig0021499:45152-45171 None:intergenic 45.0%
GTTGTCTGCTCGTGGAAATT+GGG - tig0021499:45153-45172 None:intergenic 45.0%
AGTTGTCTGCTCGTGGAAAT+TGG - tig0021499:45154-45173 None:intergenic 45.0%
TGCTAATCGTTCCATCTCCA+AGG - tig0021499:45341-45360 None:intergenic 45.0%
! TATGTTCTCAGGGTACCAGT+AGG + tig0021499:45905-45924 Msa1392370:intron 45.0%
!!! GAGATTGGCTTTTCTGGTAG+CGG + tig0021499:45955-45974 Msa1392370:CDS 45.0%
AATTTGGGCAACTGTGGGAT+GGG - tig0021499:46000-46019 None:intergenic 45.0%
CAGACACTGTCCTGCAATTT+GGG - tig0021499:46015-46034 None:intergenic 45.0%
GAAGATTTGGCCAGCGGTAA+TGG + tig0021499:42349-42368 Msa1392370:CDS 50.0%
GTGCGTGAAGACCATCAACA+AGG - tig0021499:42801-42820 None:intergenic 50.0%
!! GTTGATGGTCTTCACGCACA+CGG + tig0021499:42802-42821 Msa1392370:CDS 50.0%
GAAAGGAGGTCATGAGAGTC+TGG + tig0021499:42864-42883 Msa1392370:CDS 50.0%
!! GAGTCTGGGATTTTGCAGGA+AGG + tig0021499:42879-42898 Msa1392370:CDS 50.0%
TTTGGTCGGATTCAACCAGC+CGG + tig0021499:43055-43074 Msa1392370:CDS 50.0%
ACACTCATAGTCAATCCGGC+TGG - tig0021499:43073-43092 None:intergenic 50.0%
TCTGGGTGTAACCATCATGG+AGG + tig0021499:43162-43181 Msa1392370:CDS 50.0%
TCACAAACAGCCTAAAGGGG+TGG + tig0021499:43272-43291 Msa1392370:CDS 50.0%
CCATCAGTAACCACCCCTTT+AGG - tig0021499:43285-43304 None:intergenic 50.0%
CCTAAAGGGGTGGTTACTGA+TGG + tig0021499:43282-43301 Msa1392370:CDS 50.0%
CGAGTTTATGCCTTCACACC+TGG - tig0021499:43607-43626 None:intergenic 50.0%
AGTGATGTGCTCGTGTCTCA+TGG - tig0021499:44030-44049 None:intergenic 50.0%
!! ATAAAGAGGCGTCGTGAGAG+TGG + tig0021499:44266-44285 Msa1392370:CDS 50.0%
!! CCTTTGGCCTTGGCTTTGAT+AGG - tig0021499:44329-44348 None:intergenic 50.0%
CCTATCAAAGCCAAGGCCAA+AGG + tig0021499:44326-44345 Msa1392370:CDS 50.0%
ACATCACGTCCAGCTAGTTC+TGG - tig0021499:44437-44456 None:intergenic 50.0%
TGTCTGCTCGTGGAAATTGG+GGG - tig0021499:45151-45170 None:intergenic 50.0%
GTTTATGGGTGCCTTGGAGA+TGG + tig0021499:45327-45346 Msa1392370:intron 50.0%
CAATTTGGGCAACTGTGGGA+TGG - tig0021499:46001-46020 None:intergenic 50.0%
CCTGCAATTTGGGCAACTGT+GGG - tig0021499:46005-46024 None:intergenic 50.0%
TCCTGCAATTTGGGCAACTG+TGG - tig0021499:46006-46025 None:intergenic 50.0%
GCAGACACTGTCCTGCAATT+TGG - tig0021499:46016-46035 None:intergenic 50.0%
!! CTTCTTACGAGGGGCACCTT+TGG - tig0021499:44345-44364 None:intergenic 55.0%
GATGGGAAGTTGTCTGCTCG+TGG - tig0021499:45161-45180 None:intergenic 55.0%
CCCACAGTTGCCCAAATTGC+AGG + tig0021499:46002-46021 Msa1392370:CDS 55.0%
!! ACGAGGGGCACCTTTGGCCT+TGG - tig0021499:44339-44358 None:intergenic 65.0%
GGGCAACTGTGGGATGGGTG+AGG - tig0021499:45995-46014 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021499 gene 42319 46056 42319 ID=Msa1392370;Name=Msa1392370
tig0021499 mRNA 42319 46056 42319 ID=Msa1392370-mRNA-1;Parent=Msa1392370;Name=Msa1392370-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0.75|0.6|0.8|1|1|5|0|935
tig0021499 exon 42319 44523 42319 ID=Msa1392370-mRNA-1:exon:13138;Parent=Msa1392370-mRNA-1
tig0021499 exon 44610 44702 44610 ID=Msa1392370-mRNA-1:exon:13139;Parent=Msa1392370-mRNA-1
tig0021499 exon 44775 44846 44775 ID=Msa1392370-mRNA-1:exon:13140;Parent=Msa1392370-mRNA-1
tig0021499 exon 44939 45235 44939 ID=Msa1392370-mRNA-1:exon:13141;Parent=Msa1392370-mRNA-1
tig0021499 exon 45916 46056 45916 ID=Msa1392370-mRNA-1:exon:13142;Parent=Msa1392370-mRNA-1
tig0021499 CDS 42319 44523 42319 ID=Msa1392370-mRNA-1:cds;Parent=Msa1392370-mRNA-1
tig0021499 CDS 44610 44702 44610 ID=Msa1392370-mRNA-1:cds;Parent=Msa1392370-mRNA-1
tig0021499 CDS 44775 44846 44775 ID=Msa1392370-mRNA-1:cds;Parent=Msa1392370-mRNA-1
tig0021499 CDS 44939 45235 44939 ID=Msa1392370-mRNA-1:cds;Parent=Msa1392370-mRNA-1
tig0021499 CDS 45916 46056 45916 ID=Msa1392370-mRNA-1:cds;Parent=Msa1392370-mRNA-1
Gene Sequence

>Msa1392370

ATGGCCGCAAACGATGGAGACATAAATGGTGAAGATTTGGCCAGCGGTAATGGCGTGTTTAATGAAGAAGGAAAAGAGGATATGGATACTTACAAGAAGATTAGGGAATTGACGGATGATGATATAAGAGGATTGGAATTTGATTCAGAGGAAAAAGCGACACAATTTTATGAAATCTATGCAGATTGTCATGGGTTTGTGGTAAGAAAAGATGATGTAAACAAAGATGATGATGGGAATATAATTGCACGTCGATTAGTATGTAATAGAGAGGGTGAGAATAAAAATAAGAAACAAAGTACATATTCGAGGCAGACCATTCGAACTAAGTGTTCTGCAAGGCTTCGAGTAGTTTTAAATGTTGATACTAATAAGTGGAGAGTTTCTGGATTCGAGCCCTCACACAACCATGAGTTAACTCCAACCCGTTATGCTCATTTGGTTCCTAAGAACCGTCAATTGAGTGAATCTGATAAAGCCCTTGTTGATGGTCTTCACGCACACGGTGTTAGAACCTGTCATATTTTGGGTTTTATGATGGCTCAGAAAGGAGGTCATGAGAGTCTGGGATTTTGCAGGAAGGACTTATATAACTACTTATACAATGAAGGAAAGGCAAGAATAGAAGGTGGGGATTCTTTTGCTGCGTTGAGTTATTTGCAGGCTAAAGCTGATAATGATCCAATGTTCTTTTCGAAGTTTACCACAACAGAAGAAGGACGTTTAGAAAATTTATTTTGGTCGGATTCAACCAGCCGGATTGACTATGAGTGTTTTGGGGATGTGGTTGCATTTGACGCAACTTACAGGAAGAACAGATATGACAAGCCTCTTGTTATTTTTTCTGGGTGTAACCATCATGGAGGAACTATAATTTTTGGTTGTGCTTTAGTTTCTAATGAAACACGTGAGACATACAAGTGGCTTTTAAATACATTTTTAGAAGCAATGTATCACAAACAGCCTAAAGGGGTGGTTACTGATGGAGATCTTTCAATGAGAGAAGCTATCAAAGAGGTATTTCCAAACTCGTTGCATCGTCTTTGTTCATGGCATTTTCATCGAAACGCTGAAGAGAATGTGAAGAATCCAAAATTCTTGGAAGAATTTTCCTCATTGATTTATGCTAATTATACCGTGGACAAATTTGAAATTGAGTGGAAGAGGGTCATTGATGATTACAATTTATCAGACAATACATGGGTTAAAAAAGCATATGAGATGAAGACAATGTGGGCGAGTGCATACATGCGAGAAAACTTTTTTTGTGGCATAAGAACTACATCCAGGTGTGAAGGCATAAACTCGTTTATAAATATGTATGTTGAAAGCAAAAACAGTCTGATTGATTTCATGCATGGTTTTAATAGAGCTGTAAAAGAATACAGGCACAAAGAGTTAATGGCAGATTTTAATACGTTCTATTACAAACCTGTGTTGACAACAAAGTTACACAGGTTTGAGCTTGAAGCTTCAAAAATCTTTACGAGGATAAAATTTTATGAAGTTCAAAATGAAATAGAAGATGCAATCACATTAAATGTTTTTGAGCAGTCTAGTCTCGGAAAGACTGTGAAGTTTAAGATGAATAGATTTGGCAACAAAGATTCTACGTATCTAGTTCAGCTTGATAAGGAACAAAGTAAATTTTTATGTGATTGTAGACAGTTTGAACGGATTGGAATTCCATGTTCCCATATTATTTGTGCCATGAGACACGAGCACATCACTGAGTTTCCTGATAGTCTAATTTGCAAAAGGTGGACCAAATCAGCAAAGGATGATTACATATCGTCTATGTCTTCTAAAGAATGCGATGATGAAAAAATGTTCATGTTCCGTCGAGGAACTATGTCTACTGCATTGAATAATCTATATGACATTTCTTGTAAACACCCAGATGATTATAAAGAGGCTATGGAGGGGATTTACAGTTTGTGTGAGAAAATAAAGAGGCGTCGTGAGAGTGGTGAAAAATATAAGACCAATCCATCCGTTATTGGTGATCCTATCAAAGCCAAGGCCAAAGGTGCCCCTCGTAAGAAGAAGAAATCATCCAGGAAAAGGAGACATTGTTCTCTCTGCAAAAATATTGCTCACACGAAGCAAAACTGTCCAGAACTAGCTGGACGTGATGTTCTAAATGAAGTCAATGAAGAGGATTATTCTCGTCGATCTGACCATGACAAAAACGTTGGATGTGAGGGTGTTGATAAGAGTTGTGACAGGAAGCGTAAGAGAAAAGTTGTCAATGTTACTTCAATGCAGGAAGATATCAATAAAAGAAGATCAAAACAGATTGAAAATGAAGGGATTGGTCGACCTAATGAAAACATGACAGATAAAAACATGCACACAGGATTTGACAACAGTCAAGATCAAGGTGATGTACATGATAAACCCCATGTTAAAATGGAAGACCAAAATGTAACATGGAAAGATGGTTCAATGTATGTTCCTAATTATTTTACAGGCGCCAACGGTGTTCCAATTCAAAGTGTTCCGATCTTTCCTCAATTTCCAAATCAAATTGCATCTACTTTTCCACAATTTTTTCCAAATCAAGGTGCATCAATTTTCCCCCAATTTCCACGAGCAGACAACTTCCCATCACATTCAAGTTCTGTTGGATATGGCAGAGCACATAATGTCCCTCATCATACACCTGGTACCAGTAGGCCAACTCATTATCATGTCCTTTTGGATGAGATTGGCTTTTCTGGTAGCGGTCGTGATATCAATGCCTCACCCATCCCACAGTTGCCCAAATTGCAGGACAGTGTCTGCAACTCTATGTTCTTTGTTTGA
Protein sequence

>Msa1392370

MAANDGDINGEDLASGNGVFNEEGKEDMDTYKKIRELTDDDIRGLEFDSEEKATQFYEIYADCHGFVVRKDDVNKDDDGNIIARRLVCNREGENKNKKQSTYSRQTIRTKCSARLRVVLNVDTNKWRVSGFEPSHNHELTPTRYAHLVPKNRQLSESDKALVDGLHAHGVRTCHILGFMMAQKGGHESLGFCRKDLYNYLYNEGKARIEGGDSFAALSYLQAKADNDPMFFSKFTTTEEGRLENLFWSDSTSRIDYECFGDVVAFDATYRKNRYDKPLVIFSGCNHHGGTIIFGCALVSNETRETYKWLLNTFLEAMYHKQPKGVVTDGDLSMREAIKEVFPNSLHRLCSWHFHRNAEENVKNPKFLEEFSSLIYANYTVDKFEIEWKRVIDDYNLSDNTWVKKAYEMKTMWASAYMRENFFCGIRTTSRCEGINSFINMYVESKNSLIDFMHGFNRAVKEYRHKELMADFNTFYYKPVLTTKLHRFELEASKIFTRIKFYEVQNEIEDAITLNVFEQSSLGKTVKFKMNRFGNKDSTYLVQLDKEQSKFLCDCRQFERIGIPCSHIICAMRHEHITEFPDSLICKRWTKSAKDDYISSMSSKECDDEKMFMFRRGTMSTALNNLYDISCKHPDDYKEAMEGIYSLCEKIKRRRESGEKYKTNPSVIGDPIKAKAKGAPRKKKKSSRKRRHCSLCKNIAHTKQNCPELAGRDVLNEVNEEDYSRRSDHDKNVGCEGVDKSCDRKRKRKVVNVTSMQEDINKRRSKQIENEGIGRPNENMTDKNMHTGFDNSQDQGDVHDKPHVKMEDQNVTWKDGSMYVPNYFTGANGVPIQSVPIFPQFPNQIASTFPQFFPNQGASIFPQFPRADNFPSHSSSVGYGRAHNVPHHTPGTSRPTHYHVLLDEIGFSGSGRDINASPIPQLPKLQDSVCNSMFFV*