AlfalfaGEDB | Msa0662160

M. sativa cultivar zhongmu-4 / Msa0662160

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0662160	GAU40839.1	68.692	214	61	3	76	288	31	239	1.80e-91	302

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0662160	A0A2Z6P9Q3	68.692	214	61	3	76	288	31	239	8.61e-92	302

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TFs/TRs:

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Gene ID	Type	Classification
Msa0662160	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0662160	Msa0828750	0.941760	2.369010e-101	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0662160	MtrunA17_Chr2g0296781	68.156	179	52	2	110	288	1	174	5.84e-76	248
Msa0662160	MtrunA17_Chr1g0196541	54.438	169	76	1	120	288	7	174	1.01e-52	186
Msa0662160	MtrunA17_Chr6g0476431	58.889	90	33	1	110	199	1	86	2.43e-30	111
Msa0662160	MtrunA17_Chr6g0477261	79.365	63	13	0	226	288	1	63	3.23e-24	104
Msa0662160	MtrunA17_Chr6g0451441	27.559	254	170	6	24	273	5	248	5.21e-19	88.2
Msa0662160	MtrunA17_Chr5g0441581	31.633	196	115	5	99	288	20	202	1.13e-18	87.8
Msa0662160	MtrunA17_Chr5g0409511	78.049	41	9	0	291	331	15	55	8.85e-18	76.6
Msa0662160	MtrunA17_Chr6g0479711	69.231	39	12	0	293	331	62	100	1.15e-15	72.0
Msa0662160	MtrunA17_Chr4g0051451	48.148	81	31	3	291	360	1	81	9.10e-15	69.3
Msa0662160	MtrunA17_Chr7g0258861	24.742	194	138	3	99	288	3	192	3.42e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0662160	AT1G76320.1	30.588	170	109	4	117	284	4	166	1.45e-14	75.5
Msa0662160	AT1G76320.4	30.588	170	109	4	117	284	4	166	1.45e-14	75.5
Msa0662160	AT1G76320.3	30.588	170	109	4	117	284	4	166	1.52e-14	75.5
Msa0662160	AT1G76320.2	30.588	170	109	4	117	284	4	166	1.62e-14	75.5

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Find 70 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACAGTAACAACAG+AGG	0.728183	4_3:+74066117	None:intergenic
AAACATACATGCCGGAGTAT+TGG	0.447153	4_3:+74066323	None:intergenic
AAAGTACCTCATTTAGTAGT+TGG	0.359646	4_3:+74067930	None:intergenic
AAAGTGAGGCGGCTTCGACT+TGG	0.512577	4_3:-74066545	Msa0662160:CDS
AAATGAAGATGATGAACCTA+AGG	0.544931	4_3:-74067053	Msa0662160:CDS
AAGAATTATGCTAGATGTAT+AGG	0.283443	4_3:-74066974	Msa0662160:CDS
AAGCTTGGATTAATGTAAGT+AGG	0.576078	4_3:-74066649	Msa0662160:CDS
AAGTGAGGCGGCTTCGACTT+GGG	0.428800	4_3:-74066544	Msa0662160:CDS
AATGAACCAACTACTAAATG+AGG	0.540642	4_3:-74067936	Msa0662160:intron
AATGTATGTGTGTCTTCAGA+TGG	0.584390	4_3:-74066800	Msa0662160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACCAAAATACTCCTA+GGG	-	chr4_3:74066141-74066160	Msa0662160:CDS	30.0%
GGTTAAGGGTTAATCTAAAA+TGG	+	chr4_3:74066212-74066231	None:intergenic	30.0%
AAAAAGGAAATTAGATGGTG+GGG	+	chr4_3:74066302-74066321	None:intergenic	30.0%
AAGGAAGTAACATAAGGTTA+TGG	+	chr4_3:74066432-74066451	None:intergenic	30.0%
GTAGCAATTCTGATAAAAAG+AGG	+	chr4_3:74066533-74066552	None:intergenic	30.0%
GAATTAAAAGTAAAGGCAAC+AGG	+	chr4_3:74066663-74066682	None:intergenic	30.0%
AAATGAAGATGATGAACCTA+AGG	-	chr4_3:74066963-74066982	Msa0662160:CDS	30.0%
TTAAATTTCATGCCAACCTT+AGG	+	chr4_3:74066982-74067001	None:intergenic	30.0%
AGTACAAAAAATGGAGATGA+TGG	-	chr4_3:74067084-74067103	Msa0662160:CDS	30.0%
TAGCATGAAAACACATTGTA+AGG	-	chr4_3:74067185-74067204	Msa0662160:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	74066081	74067957	74066081	ID=Msa0662160;Name=Msa0662160
chr4_3	mRNA	74066081	74067957	74066081	ID=Msa0662160-mRNA-1;Parent=Msa0662160;Name=Msa0662160-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|369
chr4_3	exon	74067937	74067957	74067937	ID=Msa0662160-mRNA-1:exon:22323;Parent=Msa0662160-mRNA-1
chr4_3	exon	74066511	74067353	74066511	ID=Msa0662160-mRNA-1:exon:22322;Parent=Msa0662160-mRNA-1
chr4_3	exon	74066285	74066412	74066285	ID=Msa0662160-mRNA-1:exon:22321;Parent=Msa0662160-mRNA-1
chr4_3	exon	74066081	74066198	74066081	ID=Msa0662160-mRNA-1:exon:22320;Parent=Msa0662160-mRNA-1
chr4_3	CDS	74067937	74067957	74067937	ID=Msa0662160-mRNA-1:cds;Parent=Msa0662160-mRNA-1
chr4_3	CDS	74066511	74067353	74066511	ID=Msa0662160-mRNA-1:cds;Parent=Msa0662160-mRNA-1
chr4_3	CDS	74066285	74066412	74066285	ID=Msa0662160-mRNA-1:cds;Parent=Msa0662160-mRNA-1
chr4_3	CDS	74066081	74066198	74066081	ID=Msa0662160-mRNA-1:cds;Parent=Msa0662160-mRNA-1

Gene Sequence

>Msa0662160

ATGAACCAACTACTAAATGAGTTGATTAATTTAAGTTTCTTTTTTAAAAAATTTGTTGCATTAGTGGAGAAAAGATCTACATCTTGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGTGAAAATTGTGAGGATAATTTAGCAGAAAATGAAGATGATGAACCTAAGGTTGGCATGAAATTTAATTCTGCAGAAGAAGTTGACGAAGAAGTTGACAAATATTACAAGAATTATGCTAGATGTATAGGTTTTGGAGTTAGCAAAATCAGTACAAAAAATGGAGATGATGGAAAAAAGTATTTTACTCTAGGGTGTAGCCGTGCAAGAAGCTATGTGAGTAATTCCAAAAATCTTTTAAAGCCAAATCCTAGCATGAAAACACATTGTAAGGCTAGAGTAAATGTATGTGTGTCTTCAGATGGAACAATTACTATTTCTAAGGTTGCTCTTGGACATAATCATGACTTAATAAGTCCAAGCAAATCAAGATATTTTAAATGCAACAAGAATATAGACCCTAGTATAAAAAGGAGATTGGAGGTTAATGACCAAGCTTGGATTAATGTAAGTAGGAATTTTTGGTCTATGGTTGTTGAAGCAAGTGGATATGATAACCTTACATTCGGGAAAAAAGATGTTAGAAACTACATAGACAAAGTGAGGCGGCTTCGACTTGGGATAGGAGACGCTGAAGCCATTCAAAATTATTTTGGCTGCTTATGGGATGAGTTAGTGGAGAAGGTTAAAGTGTTGACTTGGAGGTGGTTGTTCGGAAGATCCAATACTCCGGCATGTATGTTTTACGAGTGGAGTTGGTGTCCCCGGGAGTGTCTTTTGAGAACAGCAGCCACTGGTGCTGCTTTCTGCCTGCTGCGCAGGCTGGTTGTTGCTGTTCGGGCCTCTGTTGTTACTGTTTGTTTTGGGACATTTTCCTTGGGCGGTTTTGGGTTGGCATAG

Protein sequence

>Msa0662160

MNQLLNELINLSFFFKKFVALVEKRSTSCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGENCEDNLAENEDDEPKVGMKFNSAEEVDEEVDKYYKNYARCIGFGVSKISTKNGDDGKKYFTLGCSRARSYVSNSKNLLKPNPSMKTHCKARVNVCVSSDGTITISKVALGHNHDLISPSKSRYFKCNKNIDPSIKRRLEVNDQAWINVSRNFWSMVVEASGYDNLTFGKKDVRNYIDKVRRLRLGIGDAEAIQNYFGCLWDELVEKVKVLTWRWLFGRSNTPACMFYEWSWCPRECLLRTAATGAAFCLLRRLVVAVRASVVTVCFGTFSLGGFGLA*