AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0664120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664120 MtrunA17_Chr4g0002141 86.242 487 16 1 1 487 1 436 0.0 836
Msa0664120 MtrunA17_Chr4g0000411 79.466 487 91 3 1 487 1 478 0.0 786
Msa0664120 MtrunA17_Chr2g0289421 47.551 490 192 12 1 487 1 428 4.94e-141 412
Msa0664120 MtrunA17_Chr4g0051481 82.727 110 19 0 350 459 15 124 6.44e-62 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664120 AT1G16860.1 70.842 487 129 6 1 487 1 474 0.0 689
Msa0664120 AT1G78880.1 71.047 487 122 7 1 487 1 468 0.0 688
Msa0664120 AT4G22290.1 48.577 492 201 12 1 487 1 445 1.11e-141 414

Find 202 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTTCCAGTCTGGTTTA+AGG 0.132427 4_4:+3131569 Msa0664120:CDS
ATACGCATCTGGGGACTTTC+TGG 0.148129 4_4:-3131283 None:intergenic
ACACGACTCACTATGTTCTT+AGG 0.155398 4_4:+3128775 Msa0664120:five_prime_UTR
CTTTCACTTGGAATACTTAT+TGG 0.168647 4_4:+3129907 Msa0664120:CDS
ATATTTGATTTGTCAATCTT+AGG 0.195483 4_4:+3128007 Msa0664120:five_prime_UTR
ATAATTACATACCTATAAAA+AGG 0.209822 4_4:-3128462 None:intergenic
TTGTCTTATGGTAATGTATT+GGG 0.215827 4_4:+3128540 Msa0664120:five_prime_UTR
TCTATTGATTCTTTGTCTTA+TGG 0.228221 4_4:+3128528 Msa0664120:five_prime_UTR
TTGGGGAAGAAGAGCTATTA+TGG 0.228841 4_4:+3129926 Msa0664120:CDS
TTTCACTTGGAATACTTATT+GGG 0.234243 4_4:+3129908 Msa0664120:CDS
CACACATCGGCGACTTTCTT+GGG 0.239546 4_4:+3131361 Msa0664120:CDS
CGTGATGGTGCACCTGTTAT+TGG 0.255697 4_4:-3129312 None:intergenic
TTTGTCATGGGTTTCATTGC+TGG 0.264595 4_4:+3129807 Msa0664120:CDS
TTATGTCAATTGTGAATATA+AGG 0.283393 4_4:+3128819 Msa0664120:five_prime_UTR
CTCTGGAGATAACTCTTCTT+TGG 0.287381 4_4:-3131668 None:intergenic
CCACACATCGGCGACTTTCT+TGG 0.287717 4_4:+3131360 Msa0664120:CDS
TTCTTGGGGCCTTAGATTGC+TGG 0.290905 4_4:+3131376 Msa0664120:CDS
AGCAATGGCCTATATGTATC+AGG 0.299693 4_4:+3129147 Msa0664120:CDS
ATTGTGGTTGTGATTCTCTT+TGG 0.305200 4_4:+3129870 Msa0664120:CDS
TTTATGTCCCCACCAGTATA+TGG 0.307702 4_4:-3129222 None:intergenic
GGCTCAAAATCTAGAAAATC+TGG 0.307877 4_4:+3129288 Msa0664120:CDS
CCAACTGGACGTCAACATTC+TGG 0.310059 4_4:+3129540 Msa0664120:CDS
GTTTAACGGGCCGGATGTTA+TGG 0.313922 4_4:-3129610 None:intergenic
CCATCACGAACAACATCTTT+TGG 0.315052 4_4:+3129327 Msa0664120:CDS
AACCGGTATGACATCATTCT+TGG 0.315437 4_4:-3132018 None:intergenic
AAGCTCGGAGTCTGGATAAT+TGG 0.320920 4_4:-3129958 None:intergenic
CCCTCTATTATTAGTGGTGG+TGG 0.321103 4_4:+3132109 Msa0664120:three_prime_UTR
ACCCATCTATCTACCTTCTA+TGG 0.323239 4_4:-3129100 None:intergenic
TTTGTCTTATGGTAATGTAT+TGG 0.329810 4_4:+3128539 Msa0664120:five_prime_UTR
TGTTTGTTGCATCATCTAAT+TGG 0.331070 4_4:+3132062 Msa0664120:three_prime_UTR
TTTAAATAGTTGTATAGTTA+TGG 0.333612 4_4:+3132211 Msa0664120:three_prime_UTR
GAGAACCGTGACAGCTTGAT+TGG 0.337027 4_4:-3129715 None:intergenic
ACCCTTTCCTTCGGCTGCTC+TGG 0.338129 4_4:-3129174 None:intergenic
TCACAAAAGAAATCTAATTC+CGG 0.341069 4_4:+3129453 Msa0664120:CDS
GGAAGCACGGTGAGTGTAAT+GGG 0.343936 4_4:+3131864 Msa0664120:CDS
CAGTGGCAACCTGTTGTAAT+TGG 0.347392 4_4:-3131936 None:intergenic
GGAGGAGCCGGTTCACATTC+CGG 0.350207 4_4:+3129348 Msa0664120:CDS
GTGATGAATATTCCTTTAGA+AGG 0.351769 4_4:+3129745 Msa0664120:CDS
TAGGAAAGTGTCCGGTCCTT+TGG 0.356482 4_4:+3129647 Msa0664120:CDS
AGATTTCCAGTCTGGTTTAA+GGG 0.356876 4_4:+3131570 Msa0664120:CDS
AACTCACTTCCAGCAATCTA+AGG 0.364920 4_4:-3131385 None:intergenic
TCCGGCCCGTTAAACTCTTC+TGG 0.365621 4_4:+3129618 Msa0664120:CDS
ACTTGTCCAGTAGCAAGTTC+TGG 0.366278 4_4:+3129044 Msa0664120:five_prime_UTR
GGACAATTTGTGAAAGTCTC+TGG 0.369526 4_4:+3129996 Msa0664120:CDS
TACATCTCAGATTTCCAGTC+TGG 0.374160 4_4:+3131562 Msa0664120:CDS
ACTTCAGGTTCCATGTCTAT+TGG 0.376754 4_4:+3129411 Msa0664120:CDS
CGGGCTATGTATACAACTTC+AGG 0.380080 4_4:+3129396 Msa0664120:CDS
TATTTGATTTGTCAATCTTA+GGG 0.382126 4_4:+3128008 Msa0664120:five_prime_UTR
GTTGAAAATTAATTCGTTCA+AGG 0.382326 4_4:-3128754 None:intergenic
TGTTGATGTATATACGCATC+TGG 0.385504 4_4:-3131294 None:intergenic
CACAAAAGAAATCTAATTCC+GGG 0.398376 4_4:+3129454 Msa0664120:CDS
CTTTGGAAAATTCCTTCTAA+AGG 0.400379 4_4:-3129757 None:intergenic
TCAAACTGTCAAAGCAATAC+TGG 0.402361 4_4:-3129022 None:intergenic
AGACCTGTTGTCGGAAGAAC+AGG 0.402780 4_4:-3129573 None:intergenic
TGGGGAAGAAGAGCTATTAT+GGG 0.403677 4_4:+3129927 Msa0664120:CDS
CCAGAGTTCCTTCGGTGGTT+GGG 0.404523 4_4:+3131685 Msa0664120:CDS
AATAACCATAACATGGCCTT+TGG 0.408099 4_4:-3129774 None:intergenic
GGAGATAACTCTTCTTTGGT+TGG 0.409039 4_4:-3131664 None:intergenic
AGAGAATCACAACCACAATA+AGG 0.409233 4_4:-3129866 None:intergenic
TTCCATAGAAGGTAGATAGA+TGG 0.410304 4_4:+3129098 Msa0664120:exon
CACGACTCACTATGTTCTTA+GGG 0.412329 4_4:+3128776 Msa0664120:five_prime_UTR
CGCGTCATGCGGCTGGAAGA+AGG 0.413812 4_4:+3131733 Msa0664120:CDS
TACTCAACATAATGTTAAAC+CGG 0.414465 4_4:-3132035 None:intergenic
ATGTCTATTGGTGGCGCGGC+CGG 0.417223 4_4:+3129423 Msa0664120:CDS
AGAAAATCTGGACCAATAAC+AGG 0.418603 4_4:+3129300 Msa0664120:CDS
GCAACGGCCATGCCATATAC+TGG 0.418874 4_4:+3129210 Msa0664120:CDS
ATAGCCCGAGCAGCAGCATT+AGG 0.424098 4_4:-3129381 None:intergenic
TAACTATAATAGAATGTGTA+TGG 0.428734 4_4:+3128411 Msa0664120:five_prime_UTR
TTTAACGGGCCGGATGTTAT+GGG 0.428882 4_4:-3129609 None:intergenic
TTATTGCAAACAACTGACTT+TGG 0.429211 4_4:+3128953 Msa0664120:five_prime_UTR
GCAGTTCTAAGCTCGGAGTC+TGG 0.438914 4_4:-3129966 None:intergenic
ATCTTAAGACTATACCTTCA+AGG 0.438994 4_4:-3131983 None:intergenic
TGACGACCGCGTCATGCGGC+TGG 0.439958 4_4:+3131726 Msa0664120:CDS
GCAGCAGCATTAGGATGAAT+TGG 0.442526 4_4:-3129372 None:intergenic
GAACCGAGTCATCGACATAA+GGG 0.443736 4_4:-3131627 None:intergenic
ATTGTCGGAACCCTTTCCTT+CGG 0.445815 4_4:-3129183 None:intergenic
AAGTCTTCTGGTCCTCAGTC+TGG 0.446644 4_4:+3129507 Msa0664120:CDS
TGGTAATGTATTGGGGTAGT+TGG 0.447443 4_4:+3128548 Msa0664120:five_prime_UTR
TCATCCTAATGCTGCTGCTC+GGG 0.448028 4_4:+3129377 Msa0664120:CDS
CAACCTGTTGTAATTGGCTC+TGG 0.449007 4_4:-3131930 None:intergenic
CCCAACCACCGAAGGAACTC+TGG 0.451038 4_4:-3131685 None:intergenic
GCTCCTGTTCTTCCGACAAC+AGG 0.451493 4_4:+3129570 Msa0664120:CDS
TCCAGAGTTCCTTCGGTGGT+TGG 0.451936 4_4:+3131684 Msa0664120:CDS
CCAGTCTGGTTTAAGGGCAT+TGG 0.452634 4_4:+3131576 Msa0664120:CDS
TCTGGTGGAGTAACTCCAAC+TGG 0.452783 4_4:+3129525 Msa0664120:CDS
TTCATCCTAATGCTGCTGCT+CGG 0.459175 4_4:+3129376 Msa0664120:CDS
GACAATTTGTGAAAGTCTCT+GGG 0.466857 4_4:+3129997 Msa0664120:CDS
TCAAAATTGAAATCAACAAA+AGG 0.470235 4_4:-3128994 None:intergenic
AGTTATCTCCAGAGTTCCTT+CGG 0.477647 4_4:+3131677 Msa0664120:CDS
AAAGGACCGGACACTTTCCT+AGG 0.477866 4_4:-3129645 None:intergenic
AATAGTTGTATAGTTATGGC+TGG 0.478194 4_4:+3132215 Msa0664120:three_prime_UTR
ACAACAGGTCTCATTACATC+GGG 0.478936 4_4:+3129585 Msa0664120:CDS
TCAGACGAGTCTTCCATAGA+AGG 0.479662 4_4:+3129087 Msa0664120:five_prime_UTR
AAATTCAGGTATGTTAAAGA+AGG 0.480328 4_4:+3131843 Msa0664120:intron
CCTGTTGTAATTGGCTCTGG+TGG 0.480509 4_4:-3131927 None:intergenic
CAGATTATTATAGATTAAGA+TGG 0.481748 4_4:+3132145 Msa0664120:three_prime_UTR
AGGAAGCACGGTGAGTGTAA+TGG 0.482841 4_4:+3131863 Msa0664120:CDS
TCCACCACCACTAATAATAG+AGG 0.483290 4_4:-3132110 None:intergenic
GAGCACCAGAAGAGTTTAAC+GGG 0.484627 4_4:-3129623 None:intergenic
AATTGGTCCGGAATGTGAAC+CGG 0.485882 4_4:-3129355 None:intergenic
CTGGCCGCCCTGATACATAT+AGG 0.492316 4_4:-3129155 None:intergenic
ACTATACCTTCAAGGCTAGC+AGG 0.493773 4_4:-3131975 None:intergenic
TTCCCCTCTATTATTAGTGG+TGG 0.495890 4_4:+3132106 Msa0664120:three_prime_UTR
AGAACCGAGTCATCGACATA+AGG 0.496748 4_4:-3131628 None:intergenic
TAGTTGCTGCGTCTTTCACT+TGG 0.499653 4_4:+3129895 Msa0664120:CDS
ATGTTTGATATTCCTACTGA+TGG 0.501815 4_4:+3129267 Msa0664120:CDS
TCCGGTCCTTTGGAAGCGAC+AGG 0.503063 4_4:+3129657 Msa0664120:CDS
AGAACCGTGACAGCTTGATT+GGG 0.504116 4_4:-3129714 None:intergenic
CCACCAGAGCCAATTACAAC+AGG 0.509786 4_4:+3131927 Msa0664120:CDS
TCCATGTCGTGTAGTAGAAA+CGG 0.511622 4_4:-3128927 None:intergenic
ACATCGGGGCCCATAACATC+CGG 0.514434 4_4:+3129600 Msa0664120:CDS
TAAACTCTTCTGGTGCTCCT+AGG 0.515059 4_4:+3129628 Msa0664120:CDS
GGCCAGAGCAGCCGAAGGAA+AGG 0.516639 4_4:+3129172 Msa0664120:CDS
GTATTGCCAGAACTTGCTAC+TGG 0.519364 4_4:-3129050 None:intergenic
CAATCCTACTCTCCTTATTG+TGG 0.520480 4_4:+3129854 Msa0664120:CDS
ATCTGTAAACCAAGAAAACC+TGG 0.520746 4_4:-3128116 None:intergenic
CCAAGAAAGTCGCCGATGTG+TGG 0.521299 4_4:-3131360 None:intergenic
TGTCTTATGGTAATGTATTG+GGG 0.521388 4_4:+3128541 Msa0664120:five_prime_UTR
TCAGGTTCCATGTCTATTGG+TGG 0.521553 4_4:+3129414 Msa0664120:CDS
GCTGTCACGGTTCTCAATCA+AGG 0.524641 4_4:+3129723 Msa0664120:CDS
GGAGCACCAGAAGAGTTTAA+CGG 0.526982 4_4:-3129624 None:intergenic
TCCATAGAAGGTAGATAGAT+GGG 0.529424 4_4:+3129099 Msa0664120:exon
GATGTAATGAGACCTGTTGT+CGG 0.530788 4_4:-3129582 None:intergenic
TTAAGGGCATTGGTCAAGAC+TGG 0.533377 4_4:+3131586 Msa0664120:CDS
TCCGGGCCGTTGAGTAAGCA+TGG 0.533729 4_4:+3129471 Msa0664120:CDS
AGCATTAGGATGAATTGGTC+CGG 0.534541 4_4:-3129367 None:intergenic
GCCAGAGCAGCCGAAGGAAA+GGG 0.535600 4_4:+3129173 Msa0664120:CDS
GCATTGGTCAAGACTGGTCA+TGG 0.535819 4_4:+3131592 Msa0664120:CDS
ATGGCCGTTGCAGTCATTGT+CGG 0.539664 4_4:-3129198 None:intergenic
ATAGAATACAAGCTTTCTTG+TGG 0.542535 4_4:+3132335 Msa0664120:three_prime_UTR
ACCTGTCGCTTCCAAAGGAC+CGG 0.542637 4_4:-3129658 None:intergenic
GTTGTAATTGGCTCTGGTGG+AGG 0.543129 4_4:-3131924 None:intergenic
ATCGAACCTGTCGCTTCCAA+AGG 0.546674 4_4:-3129663 None:intergenic
ACCAGAAGAGTTTAACGGGC+CGG 0.548740 4_4:-3129619 None:intergenic
ACACATCGGCGACTTTCTTG+GGG 0.550057 4_4:+3131362 Msa0664120:CDS
TCTTCATTTGTAAGTTGACT+AGG 0.550288 4_4:+3128582 Msa0664120:five_prime_UTR
CAAGTGACGACCGCGTCATG+CGG 0.550405 4_4:+3131722 Msa0664120:CDS
GTTGATGTATATACGCATCT+GGG 0.554560 4_4:-3131293 None:intergenic
CCAATGCCCTTAAACCAGAC+TGG 0.554916 4_4:-3131576 None:intergenic
CAATTACAACAGGTTGCCAC+TGG 0.559535 4_4:+3131937 Msa0664120:CDS
CGGCCATGCCATATACTGGT+GGG 0.563584 4_4:+3129214 Msa0664120:CDS
TCTTCTGGTCCTCAGTCTGG+TGG 0.564069 4_4:+3129510 Msa0664120:CDS
CAAGAAAGTCGCCGATGTGT+GGG 0.564808 4_4:-3131359 None:intergenic
GCGTCATGCGGCTGGAAGAA+GGG 0.567626 4_4:+3131734 Msa0664120:CDS
CCGGGCCGTTGAGTAAGCAT+GGG 0.569197 4_4:+3129472 Msa0664120:CDS
TTCTCTCTCCCAACCACCGA+AGG 0.571271 4_4:-3131693 None:intergenic
CCCATGCTTACTCAACGGCC+CGG 0.573033 4_4:-3129472 None:intergenic
AGTCACACATAATTACAAGT+TGG 0.575705 4_4:-3128063 None:intergenic
TTCACTTGGAATACTTATTG+GGG 0.584812 4_4:+3129909 Msa0664120:CDS
CCACCACCACTAATAATAGA+GGG 0.585626 4_4:-3132109 None:intergenic
CAGAATTAATAACCATAACA+TGG 0.587882 4_4:-3129781 None:intergenic
ATAAACATTTATAGACATGT+AGG 0.590588 4_4:+3128434 Msa0664120:five_prime_UTR
CCAGAATGTTGACGTCCAGT+TGG 0.591032 4_4:-3129540 None:intergenic
ACCGTTTCTACTACACGACA+TGG 0.591867 4_4:+3128926 Msa0664120:five_prime_UTR
TGTTCCCAATCAAGCTGTCA+CGG 0.592305 4_4:+3129710 Msa0664120:CDS
GGCCGCGCCACCAATAGACA+TGG 0.592797 4_4:-3129421 None:intergenic
CCAAAAGATGTTGTTCGTGA+TGG 0.593399 4_4:-3129327 None:intergenic
GGTGCTCCTAGGAAAGTGTC+CGG 0.594458 4_4:+3129639 Msa0664120:CDS
CCATTGCTAAGCTGATGAGA+TGG 0.595252 4_4:-3129132 None:intergenic
GTCCAAGAATGATGTCATAC+CGG 0.596211 4_4:+3132016 Msa0664120:CDS
GTTTATATGAGTATCGAGGA+TGG 0.596932 4_4:+3131318 Msa0664120:CDS
ACAACCACAATAAGGAGAGT+AGG 0.597391 4_4:-3129858 None:intergenic
TTCCATGTCTATTGGTGGCG+CGG 0.597736 4_4:+3129419 Msa0664120:CDS
GTCATGGGTTTCATTGCTGG+CGG 0.598110 4_4:+3129810 Msa0664120:CDS
AACCCCTTATGTCGATGACT+CGG 0.606820 4_4:+3131624 Msa0664120:CDS
GACAACAGGTCTCATTACAT+CGG 0.606983 4_4:+3129584 Msa0664120:CDS
GGCCATGCCATATACTGGTG+GGG 0.607165 4_4:+3129215 Msa0664120:CDS
TTTATATGAGTATCGAGGAT+GGG 0.609039 4_4:+3131319 Msa0664120:CDS
CTTCTTCCAGCCGCATGACG+CGG 0.611684 4_4:-3131732 None:intergenic
AGAGGCACAAAACTCATGAC+TGG 0.612062 4_4:-3128259 None:intergenic
ATACTGTAGGTCGTTACTTG+CGG 0.613603 4_4:+3131236 Msa0664120:intron
CCATCTCATCAGCTTAGCAA+TGG 0.621180 4_4:+3129132 Msa0664120:CDS
ACGGCCATGCCATATACTGG+TGG 0.621711 4_4:+3129213 Msa0664120:CDS
AGGGCGGCCAGAGCAGCCGA+AGG 0.624884 4_4:+3129167 Msa0664120:CDS
GCAATGGCCTATATGTATCA+GGG 0.626956 4_4:+3129148 Msa0664120:CDS
TATCTCCAGAGTTCCTTCGG+TGG 0.629619 4_4:+3131680 Msa0664120:CDS
GTCCCCACCAGTATATGGCA+TGG 0.636397 4_4:-3129217 None:intergenic
ACAGGTTCGATGAAGCTGCA+AGG 0.638065 4_4:+3129675 Msa0664120:CDS
GAAGCACGGTGAGTGTAATG+GGG 0.642631 4_4:+3131865 Msa0664120:CDS
GTCGGAAGAACAGGAGCTTG+AGG 0.645472 4_4:-3129564 None:intergenic
AACCGAGTCATCGACATAAG+GGG 0.653406 4_4:-3131626 None:intergenic
AAGGAGAGTAGGATTGTGCA+CGG 0.656895 4_4:-3129847 None:intergenic
GGTTCCCCATGCTTACTCAA+CGG 0.659541 4_4:-3129477 None:intergenic
AGACTCGTCTGAGAACTCGC+GGG 0.661342 4_4:-3129076 None:intergenic
GGTTCCGACAATGACTGCAA+CGG 0.666643 4_4:+3129194 Msa0664120:CDS
AAGACTCGTCTGAGAACTCG+CGG 0.669505 4_4:-3129077 None:intergenic
GTATGTTAAAGAAGGAAGCA+CGG 0.670526 4_4:+3131851 Msa0664120:CDS
ACAAGTTTATATGAGTATCG+AGG 0.671590 4_4:+3131314 Msa0664120:CDS
AGGTATAGTCTTAAGATGCG+AGG 0.673800 4_4:+3131989 Msa0664120:CDS
CACCACCACTAATAATAGAG+GGG 0.678036 4_4:-3132108 None:intergenic
TTCTGGAAAGATGACTCTAG+AGG 0.681620 4_4:-3131266 None:intergenic
AAGCTGCAAATCCCACACAT+CGG 0.686120 4_4:+3131348 Msa0664120:CDS
TTGATGTATATACGCATCTG+GGG 0.691928 4_4:-3131292 None:intergenic
AAGCACGGTGAGTGTAATGG+GGG 0.692901 4_4:+3131866 Msa0664120:CDS
CGGGCCGTTGAGTAAGCATG+GGG 0.703124 4_4:+3129473 Msa0664120:CDS
TGAAAATTGTGTGAGGACAG+TGG 0.706767 4_4:+3128384 Msa0664120:five_prime_UTR
GGAGTTACTCCACCAGACTG+AGG 0.706915 4_4:-3129519 None:intergenic
ACAATTTGTGAAAGTCTCTG+GGG 0.715397 4_4:+3129998 Msa0664120:CDS
TGTCATGTGACAGAGGCGTG+TGG 0.723365 4_4:+3131531 Msa0664120:intron
GAATGCATGAAAATTGTGTG+AGG 0.744830 4_4:+3128377 Msa0664120:five_prime_UTR
CAACAGGTCTCATTACATCG+GGG 0.785514 4_4:+3129586 Msa0664120:CDS
ATGGCCTATATGTATCAGGG+CGG 0.795476 4_4:+3129151 Msa0664120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAAATCTACACT+AGG - chr4_4:3128195-3128214 None:intergenic 15.0%
!!! TTTTTTTTTGTGAAAAGAAA+AGG + chr4_4:3128221-3128240 Msa0664120:five_prime_UTR 15.0%
!! TAATTACATACCTATAAAAA+GGG - chr4_4:3128464-3128483 None:intergenic 15.0%
!! ATAATTACATACCTATAAAA+AGG - chr4_4:3128465-3128484 None:intergenic 15.0%
!!! TATTTTCTTTATGACAAAAT+CGG - chr4_4:3131041-3131060 None:intergenic 15.0%
!! TTTAAATAGTTGTATAGTTA+TGG + chr4_4:3132211-3132230 Msa0664120:three_prime_UTR 15.0%
!!! ATATTTGATTTGTCAATCTT+AGG + chr4_4:3128007-3128026 Msa0664120:five_prime_UTR 20.0%
!!! TATTTGATTTGTCAATCTTA+GGG + chr4_4:3128008-3128027 Msa0664120:five_prime_UTR 20.0%
!! TAATATGAAAAAATGAATCC+AGG + chr4_4:3128098-3128117 Msa0664120:five_prime_UTR 20.0%
!!! CAAGTTTGAAAAAAATCTTT+TGG + chr4_4:3128144-3128163 Msa0664120:five_prime_UTR 20.0%
!! TAACTATAATAGAATGTGTA+TGG + chr4_4:3128411-3128430 Msa0664120:five_prime_UTR 20.0%
!! ATAAACATTTATAGACATGT+AGG + chr4_4:3128434-3128453 Msa0664120:five_prime_UTR 20.0%
!! TTATGTCAATTGTGAATATA+AGG + chr4_4:3128819-3128838 Msa0664120:five_prime_UTR 20.0%
!!! TTAAGTTTTAGAACAAACTT+TGG - chr4_4:3128847-3128866 None:intergenic 20.0%
!! TCAAAATTGAAATCAACAAA+AGG - chr4_4:3128997-3129016 None:intergenic 20.0%
!!! ATTAGATTTCTTTTGTGAAT+TGG - chr4_4:3129451-3129470 None:intergenic 20.0%
!! TATAGTTTGATAGAGATAAA+AGG + chr4_4:3130201-3130220 Msa0664120:intron 20.0%
!! GATAAACTATACTTTACAAT+TGG + chr4_4:3130231-3130250 Msa0664120:intron 20.0%
!!! GAGTAGTTTTTAGATTTAAA+TGG + chr4_4:3130262-3130281 Msa0664120:intron 20.0%
!! TTAGATTTAAATGGTCTAAT+AGG + chr4_4:3130271-3130290 Msa0664120:intron 20.0%
!! TAGATTTAAATGGTCTAATA+GGG + chr4_4:3130272-3130291 Msa0664120:intron 20.0%
!! TAATTCTTTAATACTGTGTT+TGG + chr4_4:3130720-3130739 Msa0664120:intron 20.0%
!!! ATCTATTTTTACAGTTGTAT+CGG + chr4_4:3131766-3131785 Msa0664120:intron 20.0%
!!! TGTAACTTCTTTTTAAATTC+AGG + chr4_4:3131829-3131848 Msa0664120:intron 20.0%
!! CAGATTATTATAGATTAAGA+TGG + chr4_4:3132145-3132164 Msa0664120:three_prime_UTR 20.0%
!!! TCTATTGATTCTTTGTCTTA+TGG + chr4_4:3128528-3128547 Msa0664120:five_prime_UTR 25.0%
!! TTTGTCTTATGGTAATGTAT+TGG + chr4_4:3128539-3128558 Msa0664120:five_prime_UTR 25.0%
!! TTGTCTTATGGTAATGTATT+GGG + chr4_4:3128540-3128559 Msa0664120:five_prime_UTR 25.0%
! GTTGAAAATTAATTCGTTCA+AGG - chr4_4:3128757-3128776 None:intergenic 25.0%
! ATAAAAAAGTCAGGAGAATT+GGG + chr4_4:3129240-3129259 Msa0664120:CDS 25.0%
! TCACAAAAGAAATCTAATTC+CGG + chr4_4:3129453-3129472 Msa0664120:CDS 25.0%
! CAGAATTAATAACCATAACA+TGG - chr4_4:3129784-3129803 None:intergenic 25.0%
!!! ATTAATTCTGCTTTTTGTCA+TGG + chr4_4:3129794-3129813 Msa0664120:CDS 25.0%
!!! TTAATTCTGCTTTTTGTCAT+GGG + chr4_4:3129795-3129814 Msa0664120:CDS 25.0%
! TTTCACTTGGAATACTTATT+GGG + chr4_4:3129908-3129927 Msa0664120:CDS 25.0%
!!! CCTTTTTCATTAAATTGGAT+CGG - chr4_4:3130354-3130373 None:intergenic 25.0%
!! AAAGAATTAAAAAAGTACGC+AGG - chr4_4:3130709-3130728 None:intergenic 25.0%
!!! ACTCATGATTTATTTTGATC+AGG + chr4_4:3131087-3131106 Msa0664120:intron 25.0%
!!! CTCATGATTTATTTTGATCA+GGG + chr4_4:3131088-3131107 Msa0664120:intron 25.0%
!!! TTCTAAGGCAAATATTACTT+GGG - chr4_4:3131118-3131137 None:intergenic 25.0%
! CAATAAATGACAGTAATGTT+TGG + chr4_4:3131208-3131227 Msa0664120:intron 25.0%
! TTACAAGAGATGATATAACT+TGG + chr4_4:3131806-3131825 Msa0664120:intron 25.0%
! AAATTCAGGTATGTTAAAGA+AGG + chr4_4:3131843-3131862 Msa0664120:intron 25.0%
! TACTCAACATAATGTTAAAC+CGG - chr4_4:3132038-3132057 None:intergenic 25.0%
!!! CTTTTAGGATTTGTAAACTT+TGG + chr4_4:3132247-3132266 Msa0664120:three_prime_UTR 25.0%
AGTCACACATAATTACAAGT+TGG - chr4_4:3128066-3128085 None:intergenic 30.0%
! AAAATGAATCCAGGTTTTCT+TGG + chr4_4:3128107-3128126 Msa0664120:five_prime_UTR 30.0%
! AAATCTTTTGGATGTTGACA+TGG + chr4_4:3128156-3128175 Msa0664120:five_prime_UTR 30.0%
! TCTCTGCATATAGATTTTAG+TGG + chr4_4:3128317-3128336 Msa0664120:five_prime_UTR 30.0%
! TGTCTTATGGTAATGTATTG+GGG + chr4_4:3128541-3128560 Msa0664120:five_prime_UTR 30.0%
! TCTTCATTTGTAAGTTGACT+AGG + chr4_4:3128582-3128601 Msa0664120:five_prime_UTR 30.0%
! AAGATTTTCTTGCTTCATGA+AGG + chr4_4:3128674-3128693 Msa0664120:intron 30.0%
! TTTTGTTGCTACGTTACATT+TGG + chr4_4:3128716-3128735 Msa0664120:five_prime_UTR 30.0%
! TTATTGCAAACAACTGACTT+TGG + chr4_4:3128953-3128972 Msa0664120:five_prime_UTR 30.0%
CATAAAAAAGTCAGGAGAAT+TGG + chr4_4:3129239-3129258 Msa0664120:CDS 30.0%
ATGTTTGATATTCCTACTGA+TGG + chr4_4:3129267-3129286 Msa0664120:CDS 30.0%
! TTTCTTTTGTGAATTGGAAC+CGG - chr4_4:3129445-3129464 None:intergenic 30.0%
CACAAAAGAAATCTAATTCC+GGG + chr4_4:3129454-3129473 Msa0664120:CDS 30.0%
GTGATGAATATTCCTTTAGA+AGG + chr4_4:3129745-3129764 Msa0664120:CDS 30.0%
! CTTTGGAAAATTCCTTCTAA+AGG - chr4_4:3129760-3129779 None:intergenic 30.0%
!! CTTTAGAAGGAATTTTCCAA+AGG + chr4_4:3129758-3129777 Msa0664120:CDS 30.0%
CTTTCACTTGGAATACTTAT+TGG + chr4_4:3129907-3129926 Msa0664120:CDS 30.0%
TTCACTTGGAATACTTATTG+GGG + chr4_4:3129909-3129928 Msa0664120:CDS 30.0%
!!! ATTTTTTGCAGTTCTAAGCT+CGG - chr4_4:3129976-3129995 None:intergenic 30.0%
ATAAATAGCCTTTACCAGTT+TGG + chr4_4:3130098-3130117 Msa0664120:intron 30.0%
CCGATCCAATTTAATGAAAA+AGG + chr4_4:3130351-3130370 Msa0664120:intron 30.0%
!! GATACTTAATGAGAGCATTT+AGG + chr4_4:3130528-3130547 Msa0664120:intron 30.0%
!! CTACTTTTATAAACTGTGAC+AGG + chr4_4:3130589-3130608 Msa0664120:intron 30.0%
TATCATTACATATCGCATGT+GGG - chr4_4:3130650-3130669 None:intergenic 30.0%
ATATCATTACATATCGCATG+TGG - chr4_4:3130651-3130670 None:intergenic 30.0%
! AATTAAAAAAGTACGCAGGT+GGG - chr4_4:3130705-3130724 None:intergenic 30.0%
TTGTCAGTGTTGTCAAATAT+CGG + chr4_4:3130823-3130842 Msa0664120:intron 30.0%
TTCTTTATGACAAAATCGGA+TGG - chr4_4:3131037-3131056 None:intergenic 30.0%
!! GTTCTAAGGCAAATATTACT+TGG - chr4_4:3131119-3131138 None:intergenic 30.0%
AAACATAACTGGATGTTCTA+AGG - chr4_4:3131133-3131152 None:intergenic 30.0%
! ACAAGTTTATATGAGTATCG+AGG + chr4_4:3131314-3131333 Msa0664120:CDS 30.0%
!! TTTATATGAGTATCGAGGAT+GGG + chr4_4:3131319-3131338 Msa0664120:CDS 30.0%
ATCTTAAGACTATACCTTCA+AGG - chr4_4:3131986-3132005 None:intergenic 30.0%
! TGTTTGTTGCATCATCTAAT+TGG + chr4_4:3132062-3132081 Msa0664120:three_prime_UTR 30.0%
AATAGTTGTATAGTTATGGC+TGG + chr4_4:3132215-3132234 Msa0664120:three_prime_UTR 30.0%
ATAGAATACAAGCTTTCTTG+TGG + chr4_4:3132335-3132354 Msa0664120:three_prime_UTR 30.0%
ATCTGTAAACCAAGAAAACC+TGG - chr4_4:3128119-3128138 None:intergenic 35.0%
!!! ACAATTTTTGGTGCACATAG+AGG - chr4_4:3128280-3128299 None:intergenic 35.0%
ACCAAAAATTGTTCCACTAC+AGG + chr4_4:3128288-3128307 Msa0664120:five_prime_UTR 35.0%
!! TCCTGTAGTGGAACAATTTT+TGG - chr4_4:3128292-3128311 None:intergenic 35.0%
GAATGCATGAAAATTGTGTG+AGG + chr4_4:3128377-3128396 Msa0664120:five_prime_UTR 35.0%
! TGTAGGTATGCCCTTTTTAT+AGG + chr4_4:3128451-3128470 Msa0664120:five_prime_UTR 35.0%
TCTTGCTTCATGAAGGAAAA+CGG + chr4_4:3128681-3128700 Msa0664120:intron 35.0%
TCAAACTGTCAAAGCAATAC+TGG - chr4_4:3129025-3129044 None:intergenic 35.0%
TTCCATAGAAGGTAGATAGA+TGG + chr4_4:3129098-3129117 Msa0664120:exon 35.0%
TCCATAGAAGGTAGATAGAT+GGG + chr4_4:3129099-3129118 Msa0664120:exon 35.0%
GGCTCAAAATCTAGAAAATC+TGG + chr4_4:3129288-3129307 Msa0664120:CDS 35.0%
AGAAAATCTGGACCAATAAC+AGG + chr4_4:3129300-3129319 Msa0664120:CDS 35.0%
GAACCGATTAAAAAGTCTTC+TGG + chr4_4:3129495-3129514 Msa0664120:CDS 35.0%
! GGACCAGAAGACTTTTTAAT+CGG - chr4_4:3129501-3129520 None:intergenic 35.0%
! ATTTTCCAAAGGCCATGTTA+TGG + chr4_4:3129769-3129788 Msa0664120:CDS 35.0%
AATAACCATAACATGGCCTT+TGG - chr4_4:3129777-3129796 None:intergenic 35.0%
AGAGAATCACAACCACAATA+AGG - chr4_4:3129869-3129888 None:intergenic 35.0%
ATTGTGGTTGTGATTCTCTT+TGG + chr4_4:3129870-3129889 Msa0664120:CDS 35.0%
GAGCTTAGAACTGCAAAAAA+TGG + chr4_4:3129975-3129994 Msa0664120:CDS 35.0%
GACAATTTGTGAAAGTCTCT+GGG + chr4_4:3129997-3130016 Msa0664120:CDS 35.0%
ACAATTTGTGAAAGTCTCTG+GGG + chr4_4:3129998-3130017 Msa0664120:CDS 35.0%
AGGATAGTTTGATAGAGGTA+AGG + chr4_4:3130162-3130181 Msa0664120:intron 35.0%
TCGTCATAATTTCCTATCAC+AGG - chr4_4:3130315-3130334 None:intergenic 35.0%
!! CAGGGCCTTTTTCATTAAAT+TGG - chr4_4:3130359-3130378 None:intergenic 35.0%
CAATTTAATGAAAAAGGCCC+TGG + chr4_4:3130357-3130376 Msa0664120:intron 35.0%
GACGAAAATATCATCGTGAA+CGG + chr4_4:3130444-3130463 Msa0664120:intron 35.0%
TGAACGGAAAGCCTTTAATT+TGG + chr4_4:3130460-3130479 Msa0664120:intron 35.0%
!! GAAAGCCTTTAATTTGGTCT+TGG + chr4_4:3130466-3130485 Msa0664120:intron 35.0%
AACAGCCAAGACCAAATTAA+AGG - chr4_4:3130474-3130493 None:intergenic 35.0%
TATAAAAGTAGCAACTCCAG+AGG - chr4_4:3130580-3130599 None:intergenic 35.0%
! GAATTAAAAAAGTACGCAGG+TGG - chr4_4:3130706-3130725 None:intergenic 35.0%
! AAATATCGGTGGCAGTTTTT+AGG + chr4_4:3130837-3130856 Msa0664120:intron 35.0%
ATAACATTCAGTGTTGTCGA+TGG - chr4_4:3130978-3130997 None:intergenic 35.0%
TTGATGTATATACGCATCTG+GGG - chr4_4:3131295-3131314 None:intergenic 35.0%
GTTGATGTATATACGCATCT+GGG - chr4_4:3131296-3131315 None:intergenic 35.0%
TGTTGATGTATATACGCATC+TGG - chr4_4:3131297-3131316 None:intergenic 35.0%
!! GTTTATATGAGTATCGAGGA+TGG + chr4_4:3131318-3131337 Msa0664120:CDS 35.0%
TTCTGTTTCACTTGATTGAC+CGG + chr4_4:3131502-3131521 Msa0664120:intron 35.0%
CTGTCACATGACATATATTC+CGG - chr4_4:3131524-3131543 None:intergenic 35.0%
GAATATATGTCATGTGACAG+AGG + chr4_4:3131524-3131543 Msa0664120:intron 35.0%
! AGATTTCCAGTCTGGTTTAA+GGG + chr4_4:3131570-3131589 Msa0664120:CDS 35.0%
GTATCGGATATCAAGTCATA+TGG + chr4_4:3131782-3131801 Msa0664120:intron 35.0%
GTATGTTAAAGAAGGAAGCA+CGG + chr4_4:3131851-3131870 Msa0664120:CDS 35.0%
GAAAAATACATTTGAGCCAG+TGG - chr4_4:3131956-3131975 None:intergenic 35.0%
! CTTTTCCCCTCTATTATTAG+TGG + chr4_4:3132103-3132122 Msa0664120:three_prime_UTR 35.0%
GCAGAGAAAAATTCCTGTAG+TGG - chr4_4:3128304-3128323 None:intergenic 40.0%
TGAAAATTGTGTGAGGACAG+TGG + chr4_4:3128384-3128403 Msa0664120:five_prime_UTR 40.0%
! TGGTAATGTATTGGGGTAGT+TGG + chr4_4:3128548-3128567 Msa0664120:five_prime_UTR 40.0%
ACACGACTCACTATGTTCTT+AGG + chr4_4:3128775-3128794 Msa0664120:five_prime_UTR 40.0%
CACGACTCACTATGTTCTTA+GGG + chr4_4:3128776-3128795 Msa0664120:five_prime_UTR 40.0%
TCCATGTCGTGTAGTAGAAA+CGG - chr4_4:3128930-3128949 None:intergenic 40.0%
ACCCATCTATCTACCTTCTA+TGG - chr4_4:3129103-3129122 None:intergenic 40.0%
AGCAATGGCCTATATGTATC+AGG + chr4_4:3129147-3129166 Msa0664120:CDS 40.0%
GCAATGGCCTATATGTATCA+GGG + chr4_4:3129148-3129167 Msa0664120:CDS 40.0%
TTTATGTCCCCACCAGTATA+TGG - chr4_4:3129225-3129244 None:intergenic 40.0%
! CTAGATTTTGAGCCATCAGT+AGG - chr4_4:3129282-3129301 None:intergenic 40.0%
CCAAAAGATGTTGTTCGTGA+TGG - chr4_4:3129330-3129349 None:intergenic 40.0%
! CCATCACGAACAACATCTTT+TGG + chr4_4:3129327-3129346 Msa0664120:CDS 40.0%
! TCACGAACAACATCTTTTGG+AGG + chr4_4:3129330-3129349 Msa0664120:CDS 40.0%
AGCATTAGGATGAATTGGTC+CGG - chr4_4:3129370-3129389 None:intergenic 40.0%
! ACTTCAGGTTCCATGTCTAT+TGG + chr4_4:3129411-3129430 Msa0664120:CDS 40.0%
GATGTAATGAGACCTGTTGT+CGG - chr4_4:3129585-3129604 None:intergenic 40.0%
GACAACAGGTCTCATTACAT+CGG + chr4_4:3129584-3129603 Msa0664120:CDS 40.0%
ACAACAGGTCTCATTACATC+GGG + chr4_4:3129585-3129604 Msa0664120:CDS 40.0%
TTTGTCATGGGTTTCATTGC+TGG + chr4_4:3129807-3129826 Msa0664120:CDS 40.0%
!!! ATTGCTGGCGGTTTTATTCT+TGG + chr4_4:3129822-3129841 Msa0664120:CDS 40.0%
CAATCCTACTCTCCTTATTG+TGG + chr4_4:3129854-3129873 Msa0664120:CDS 40.0%
ACAACCACAATAAGGAGAGT+AGG - chr4_4:3129861-3129880 None:intergenic 40.0%
TTGGGGAAGAAGAGCTATTA+TGG + chr4_4:3129926-3129945 Msa0664120:CDS 40.0%
TGGGGAAGAAGAGCTATTAT+GGG + chr4_4:3129927-3129946 Msa0664120:CDS 40.0%
GGACAATTTGTGAAAGTCTC+TGG + chr4_4:3129996-3130015 Msa0664120:CDS 40.0%
TGTCTTCTCCAAACTGGTAA+AGG - chr4_4:3130109-3130128 None:intergenic 40.0%
CTTAAGTGTCTTCTCCAAAC+TGG - chr4_4:3130115-3130134 None:intergenic 40.0%
CAGTTTGGAGAAGACACTTA+AGG + chr4_4:3130113-3130132 Msa0664120:intron 40.0%
! ACACTTAAGGCATCAATGCT+AGG + chr4_4:3130126-3130145 Msa0664120:intron 40.0%
! CACTTAAGGCATCAATGCTA+GGG + chr4_4:3130127-3130146 Msa0664120:intron 40.0%
GAGGAAGGATAGTTTGATAG+AGG + chr4_4:3130157-3130176 Msa0664120:intron 40.0%
CATTAGACATGACCTGTGAT+AGG + chr4_4:3130300-3130319 Msa0664120:intron 40.0%
TTTAATGAAAAAGGCCCTGG+CGG + chr4_4:3130360-3130379 Msa0664120:intron 40.0%
TCAGTGTTGTCAAATATCGG+TGG + chr4_4:3130826-3130845 Msa0664120:intron 40.0%
ATATCGGTCGAAATTGGGTA+TGG - chr4_4:3130870-3130889 None:intergenic 40.0%
ATACCCAATTTCGACCGATA+TGG + chr4_4:3130869-3130888 Msa0664120:intron 40.0%
TCCACCATAATCCGATATGA+CGG + chr4_4:3130900-3130919 Msa0664120:intron 40.0%
AGCTTCTCGTCAAACATAAC+TGG - chr4_4:3131144-3131163 None:intergenic 40.0%
ATGTTTGGCTGTGATACTGT+AGG + chr4_4:3131223-3131242 Msa0664120:intron 40.0%
ATACTGTAGGTCGTTACTTG+CGG + chr4_4:3131236-3131255 Msa0664120:intron 40.0%
! TTCTGGAAAGATGACTCTAG+AGG - chr4_4:3131269-3131288 None:intergenic 40.0%
AACTCACTTCCAGCAATCTA+AGG - chr4_4:3131388-3131407 None:intergenic 40.0%
TACATCTCAGATTTCCAGTC+TGG + chr4_4:3131562-3131581 Msa0664120:CDS 40.0%
! CAGATTTCCAGTCTGGTTTA+AGG + chr4_4:3131569-3131588 Msa0664120:CDS 40.0%
GGAGATAACTCTTCTTTGGT+TGG - chr4_4:3131667-3131686 None:intergenic 40.0%
! CTCTGGAGATAACTCTTCTT+TGG - chr4_4:3131671-3131690 None:intergenic 40.0%
AGTTATCTCCAGAGTTCCTT+CGG + chr4_4:3131677-3131696 Msa0664120:CDS 40.0%
!!! ATTTTTCCTGCTAGCCTTGA+AGG + chr4_4:3131969-3131988 Msa0664120:CDS 40.0%
! AGGTATAGTCTTAAGATGCG+AGG + chr4_4:3131989-3132008 Msa0664120:CDS 40.0%
GTCCAAGAATGATGTCATAC+CGG + chr4_4:3132016-3132035 Msa0664120:CDS 40.0%
AACCGGTATGACATCATTCT+TGG - chr4_4:3132021-3132040 None:intergenic 40.0%
TTCCCCTCTATTATTAGTGG+TGG + chr4_4:3132106-3132125 Msa0664120:three_prime_UTR 40.0%
CACCACCACTAATAATAGAG+GGG - chr4_4:3132111-3132130 None:intergenic 40.0%
CCACCACCACTAATAATAGA+GGG - chr4_4:3132112-3132131 None:intergenic 40.0%
TCCACCACCACTAATAATAG+AGG - chr4_4:3132113-3132132 None:intergenic 40.0%
!!! GGCTGGTTTGATGTTCTTTT+AGG + chr4_4:3132232-3132251 Msa0664120:three_prime_UTR 40.0%
! AGAGGCACAAAACTCATGAC+TGG - chr4_4:3128262-3128281 None:intergenic 45.0%
ACCGTTTCTACTACACGACA+TGG + chr4_4:3128926-3128945 Msa0664120:five_prime_UTR 45.0%
ACTTGTCCAGTAGCAAGTTC+TGG + chr4_4:3129044-3129063 Msa0664120:five_prime_UTR 45.0%
!! GTATTGCCAGAACTTGCTAC+TGG - chr4_4:3129053-3129072 None:intergenic 45.0%
TCAGACGAGTCTTCCATAGA+AGG + chr4_4:3129087-3129106 Msa0664120:five_prime_UTR 45.0%
CCATTGCTAAGCTGATGAGA+TGG - chr4_4:3129135-3129154 None:intergenic 45.0%
CCATCTCATCAGCTTAGCAA+TGG + chr4_4:3129132-3129151 Msa0664120:CDS 45.0%
ATGGCCTATATGTATCAGGG+CGG + chr4_4:3129151-3129170 Msa0664120:CDS 45.0%
ATTGTCGGAACCCTTTCCTT+CGG - chr4_4:3129186-3129205 None:intergenic 45.0%
GGTGGGGACATAAAAAAGTC+AGG + chr4_4:3129231-3129250 Msa0664120:CDS 45.0%
!! ACAACATCTTTTGGAGGAGC+CGG + chr4_4:3129336-3129355 Msa0664120:CDS 45.0%
AATTGGTCCGGAATGTGAAC+CGG - chr4_4:3129358-3129377 None:intergenic 45.0%
GCAGCAGCATTAGGATGAAT+TGG - chr4_4:3129375-3129394 None:intergenic 45.0%
TTCATCCTAATGCTGCTGCT+CGG + chr4_4:3129376-3129395 Msa0664120:CDS 45.0%
CGGGCTATGTATACAACTTC+AGG + chr4_4:3129396-3129415 Msa0664120:CDS 45.0%
TCAGGTTCCATGTCTATTGG+TGG + chr4_4:3129414-3129433 Msa0664120:CDS 45.0%
CAACAGGTCTCATTACATCG+GGG + chr4_4:3129586-3129605 Msa0664120:CDS 45.0%
! TTTAACGGGCCGGATGTTAT+GGG - chr4_4:3129612-3129631 None:intergenic 45.0%
GAGCACCAGAAGAGTTTAAC+GGG - chr4_4:3129626-3129645 None:intergenic 45.0%
! GGAGCACCAGAAGAGTTTAA+CGG - chr4_4:3129627-3129646 None:intergenic 45.0%
TAAACTCTTCTGGTGCTCCT+AGG + chr4_4:3129628-3129647 Msa0664120:CDS 45.0%
TGTTCCCAATCAAGCTGTCA+CGG + chr4_4:3129710-3129729 Msa0664120:CDS 45.0%
AGAACCGTGACAGCTTGATT+GGG - chr4_4:3129717-3129736 None:intergenic 45.0%
AAGGAGAGTAGGATTGTGCA+CGG - chr4_4:3129850-3129869 None:intergenic 45.0%
TAGTTGCTGCGTCTTTCACT+TGG + chr4_4:3129895-3129914 Msa0664120:CDS 45.0%
AAGCTCGGAGTCTGGATAAT+TGG - chr4_4:3129961-3129980 None:intergenic 45.0%
TCAATGCTAGGGTAGACTAG+AGG + chr4_4:3130138-3130157 Msa0664120:intron 45.0%
AACTATAATAGCCACCGCCA+GGG - chr4_4:3130377-3130396 None:intergenic 45.0%
AAACTATAATAGCCACCGCC+AGG - chr4_4:3130378-3130397 None:intergenic 45.0%
AGAGGTTTAGTGCGCAAACA+AGG - chr4_4:3130562-3130581 None:intergenic 45.0%
TTGTTTGCGCACTAAACCTC+TGG + chr4_4:3130561-3130580 Msa0664120:intron 45.0%
ACAGGTATCAGACACGTACT+TGG + chr4_4:3130607-3130626 Msa0664120:intron 45.0%
CTGCCATATCGGTCGAAATT+GGG - chr4_4:3130875-3130894 None:intergenic 45.0%
GGTGGAAAATCCTGCCATAT+CGG - chr4_4:3130886-3130905 None:intergenic 45.0%
ACATTCAGTGTTGTCGATGG+CGG - chr4_4:3130975-3130994 None:intergenic 45.0%
AAGCTGCAAATCCCACACAT+CGG + chr4_4:3131348-3131367 Msa0664120:CDS 45.0%
!! TTAAGGGCATTGGTCAAGAC+TGG + chr4_4:3131586-3131605 Msa0664120:CDS 45.0%
AACCCCTTATGTCGATGACT+CGG + chr4_4:3131624-3131643 Msa0664120:CDS 45.0%
AACCGAGTCATCGACATAAG+GGG - chr4_4:3131629-3131648 None:intergenic 45.0%
GAACCGAGTCATCGACATAA+GGG - chr4_4:3131630-3131649 None:intergenic 45.0%
AGAACCGAGTCATCGACATA+AGG - chr4_4:3131631-3131650 None:intergenic 45.0%
! CAACCTGTTGTAATTGGCTC+TGG - chr4_4:3131933-3131952 None:intergenic 45.0%
CAGTGGCAACCTGTTGTAAT+TGG - chr4_4:3131939-3131958 None:intergenic 45.0%
CAATTACAACAGGTTGCCAC+TGG + chr4_4:3131937-3131956 Msa0664120:CDS 45.0%
ACTATACCTTCAAGGCTAGC+AGG - chr4_4:3131978-3131997 None:intergenic 45.0%
CCCTCTATTATTAGTGGTGG+TGG + chr4_4:3132109-3132128 Msa0664120:three_prime_UTR 45.0%
!! AAATCTTAAAAATTAAAATT+TGG + chr4_4:3130679-3130698 Msa0664120:intron 5.0%
AAGACTCGTCTGAGAACTCG+CGG - chr4_4:3129080-3129099 None:intergenic 50.0%
GGTTCCGACAATGACTGCAA+CGG + chr4_4:3129194-3129213 Msa0664120:CDS 50.0%
ATGGCCGTTGCAGTCATTGT+CGG - chr4_4:3129201-3129220 None:intergenic 50.0%
! CGTGATGGTGCACCTGTTAT+TGG - chr4_4:3129315-3129334 None:intergenic 50.0%
TCATCCTAATGCTGCTGCTC+GGG + chr4_4:3129377-3129396 Msa0664120:CDS 50.0%
!! TTCCATGTCTATTGGTGGCG+CGG + chr4_4:3129419-3129438 Msa0664120:CDS 50.0%
GGTTCCCCATGCTTACTCAA+CGG - chr4_4:3129480-3129499 None:intergenic 50.0%
AAGTCTTCTGGTCCTCAGTC+TGG + chr4_4:3129507-3129526 Msa0664120:CDS 50.0%
TCTGGTGGAGTAACTCCAAC+TGG + chr4_4:3129525-3129544 Msa0664120:CDS 50.0%
CCAGAATGTTGACGTCCAGT+TGG - chr4_4:3129543-3129562 None:intergenic 50.0%
CCAACTGGACGTCAACATTC+TGG + chr4_4:3129540-3129559 Msa0664120:CDS 50.0%
AGACCTGTTGTCGGAAGAAC+AGG - chr4_4:3129576-3129595 None:intergenic 50.0%
! GTTTAACGGGCCGGATGTTA+TGG - chr4_4:3129613-3129632 None:intergenic 50.0%
! ACCAGAAGAGTTTAACGGGC+CGG - chr4_4:3129622-3129641 None:intergenic 50.0%
AAAGGACCGGACACTTTCCT+AGG - chr4_4:3129648-3129667 None:intergenic 50.0%
!! TAGGAAAGTGTCCGGTCCTT+TGG + chr4_4:3129647-3129666 Msa0664120:CDS 50.0%
! ATCGAACCTGTCGCTTCCAA+AGG - chr4_4:3129666-3129685 None:intergenic 50.0%
ACAGGTTCGATGAAGCTGCA+AGG + chr4_4:3129675-3129694 Msa0664120:CDS 50.0%
GAGAACCGTGACAGCTTGAT+TGG - chr4_4:3129718-3129737 None:intergenic 50.0%
GCTGTCACGGTTCTCAATCA+AGG + chr4_4:3129723-3129742 Msa0664120:CDS 50.0%
GTCATGGGTTTCATTGCTGG+CGG + chr4_4:3129810-3129829 Msa0664120:CDS 50.0%
TGCTAGGGTAGACTAGAGGA+AGG + chr4_4:3130142-3130161 Msa0664120:intron 50.0%
CCTGCCATATCGGTCGAAAT+TGG - chr4_4:3130876-3130895 None:intergenic 50.0%
CCAATTTCGACCGATATGGC+AGG + chr4_4:3130873-3130892 Msa0664120:intron 50.0%
GCCGTCATATCGGATTATGG+TGG - chr4_4:3130904-3130923 None:intergenic 50.0%
CGTGCCGTCATATCGGATTA+TGG - chr4_4:3130907-3130926 None:intergenic 50.0%
GTTGTGACGTGCCGTCATAT+CGG - chr4_4:3130914-3130933 None:intergenic 50.0%
GACGGCACGTCACAACAAAT+CGG + chr4_4:3130918-3130937 Msa0664120:intron 50.0%
GAGACAAAATTCCGCCACAC+CGG - chr4_4:3130944-3130963 None:intergenic 50.0%
ATACGCATCTGGGGACTTTC+TGG - chr4_4:3131286-3131305 None:intergenic 50.0%
CAAGAAAGTCGCCGATGTGT+GGG - chr4_4:3131362-3131381 None:intergenic 50.0%
CACACATCGGCGACTTTCTT+GGG + chr4_4:3131361-3131380 Msa0664120:CDS 50.0%
ACACATCGGCGACTTTCTTG+GGG + chr4_4:3131362-3131381 Msa0664120:CDS 50.0%
TTCTTGGGGCCTTAGATTGC+TGG + chr4_4:3131376-3131395 Msa0664120:CDS 50.0%
CCAATGCCCTTAAACCAGAC+TGG - chr4_4:3131579-3131598 None:intergenic 50.0%
! CCAGTCTGGTTTAAGGGCAT+TGG + chr4_4:3131576-3131595 Msa0664120:CDS 50.0%
! GCATTGGTCAAGACTGGTCA+TGG + chr4_4:3131592-3131611 Msa0664120:CDS 50.0%
TATCTCCAGAGTTCCTTCGG+TGG + chr4_4:3131680-3131699 Msa0664120:CDS 50.0%
! AGGAAGCACGGTGAGTGTAA+TGG + chr4_4:3131863-3131882 Msa0664120:CDS 50.0%
! GGAAGCACGGTGAGTGTAAT+GGG + chr4_4:3131864-3131883 Msa0664120:CDS 50.0%
GAAGCACGGTGAGTGTAATG+GGG + chr4_4:3131865-3131884 Msa0664120:CDS 50.0%
AAGCACGGTGAGTGTAATGG+GGG + chr4_4:3131866-3131885 Msa0664120:CDS 50.0%
! GTGTAATGGGGGTTGTTCAC+AGG + chr4_4:3131877-3131896 Msa0664120:CDS 50.0%
!! GTTGTAATTGGCTCTGGTGG+AGG - chr4_4:3131927-3131946 None:intergenic 50.0%
!! CCTGTTGTAATTGGCTCTGG+TGG - chr4_4:3131930-3131949 None:intergenic 50.0%
CCACCAGAGCCAATTACAAC+AGG + chr4_4:3131927-3131946 Msa0664120:CDS 50.0%
AGACTCGTCTGAGAACTCGC+GGG - chr4_4:3129079-3129098 None:intergenic 55.0%
CTGGCCGCCCTGATACATAT+AGG - chr4_4:3129158-3129177 None:intergenic 55.0%
GCAACGGCCATGCCATATAC+TGG + chr4_4:3129210-3129229 Msa0664120:CDS 55.0%
ACGGCCATGCCATATACTGG+TGG + chr4_4:3129213-3129232 Msa0664120:CDS 55.0%
CGGCCATGCCATATACTGGT+GGG + chr4_4:3129214-3129233 Msa0664120:CDS 55.0%
GGCCATGCCATATACTGGTG+GGG + chr4_4:3129215-3129234 Msa0664120:CDS 55.0%
GTCCCCACCAGTATATGGCA+TGG - chr4_4:3129220-3129239 None:intergenic 55.0%
ATAGCCCGAGCAGCAGCATT+AGG - chr4_4:3129384-3129403 None:intergenic 55.0%
TCTTCTGGTCCTCAGTCTGG+TGG + chr4_4:3129510-3129529 Msa0664120:CDS 55.0%
GGAGTTACTCCACCAGACTG+AGG - chr4_4:3129522-3129541 None:intergenic 55.0%
GTCGGAAGAACAGGAGCTTG+AGG - chr4_4:3129567-3129586 None:intergenic 55.0%
GCTCCTGTTCTTCCGACAAC+AGG + chr4_4:3129570-3129589 Msa0664120:CDS 55.0%
ACATCGGGGCCCATAACATC+CGG + chr4_4:3129600-3129619 Msa0664120:CDS 55.0%
TCCGGCCCGTTAAACTCTTC+TGG + chr4_4:3129618-3129637 Msa0664120:CDS 55.0%
!! GGTGCTCCTAGGAAAGTGTC+CGG + chr4_4:3129639-3129658 Msa0664120:CDS 55.0%
! ACCTGTCGCTTCCAAAGGAC+CGG - chr4_4:3129661-3129680 None:intergenic 55.0%
!! GCAGTTCTAAGCTCGGAGTC+TGG - chr4_4:3129969-3129988 None:intergenic 55.0%
AATGAAAAAGGCCCTGGCGG+TGG + chr4_4:3130363-3130382 Msa0664120:intron 55.0%
GCACGTCACAACAAATCGGC+CGG + chr4_4:3130922-3130941 Msa0664120:intron 55.0%
TCACAACAAATCGGCCGGTG+TGG + chr4_4:3130927-3130946 Msa0664120:intron 55.0%
!! TCAGTGTTGTCGATGGCGGA+TGG - chr4_4:3130971-3130990 None:intergenic 55.0%
CCAAGAAAGTCGCCGATGTG+TGG - chr4_4:3131363-3131382 None:intergenic 55.0%
CCACACATCGGCGACTTTCT+TGG + chr4_4:3131360-3131379 Msa0664120:CDS 55.0%
! TGTCATGTGACAGAGGCGTG+TGG + chr4_4:3131531-3131550 Msa0664120:intron 55.0%
TCCAGAGTTCCTTCGGTGGT+TGG + chr4_4:3131684-3131703 Msa0664120:CDS 55.0%
CCAGAGTTCCTTCGGTGGTT+GGG + chr4_4:3131685-3131704 Msa0664120:CDS 55.0%
TTCTCTCTCCCAACCACCGA+AGG - chr4_4:3131696-3131715 None:intergenic 55.0%
GCCAGAGCAGCCGAAGGAAA+GGG + chr4_4:3129173-3129192 Msa0664120:CDS 60.0%
ACCCTTTCCTTCGGCTGCTC+TGG - chr4_4:3129177-3129196 None:intergenic 60.0%
! GGAGGAGCCGGTTCACATTC+CGG + chr4_4:3129348-3129367 Msa0664120:CDS 60.0%
!! ATGTCTATTGGTGGCGCGGC+CGG + chr4_4:3129423-3129442 Msa0664120:CDS 60.0%
TCCGGGCCGTTGAGTAAGCA+TGG + chr4_4:3129471-3129490 Msa0664120:CDS 60.0%
CCCATGCTTACTCAACGGCC+CGG - chr4_4:3129475-3129494 None:intergenic 60.0%
CCGGGCCGTTGAGTAAGCAT+GGG + chr4_4:3129472-3129491 Msa0664120:CDS 60.0%
CGGGCCGTTGAGTAAGCATG+GGG + chr4_4:3129473-3129492 Msa0664120:CDS 60.0%
! TCCGGTCCTTTGGAAGCGAC+AGG + chr4_4:3129657-3129676 Msa0664120:CDS 60.0%
CAACAAATCGGCCGGTGTGG+CGG + chr4_4:3130930-3130949 Msa0664120:intron 60.0%
CCCAACCACCGAAGGAACTC+TGG - chr4_4:3131688-3131707 None:intergenic 60.0%
CAAGTGACGACCGCGTCATG+CGG + chr4_4:3131722-3131741 Msa0664120:CDS 60.0%
CTTCTTCCAGCCGCATGACG+CGG - chr4_4:3131735-3131754 None:intergenic 60.0%
GCGTCATGCGGCTGGAAGAA+GGG + chr4_4:3131734-3131753 Msa0664120:CDS 60.0%
GGCCAGAGCAGCCGAAGGAA+AGG + chr4_4:3129172-3129191 Msa0664120:CDS 65.0%
GGCCGCGCCACCAATAGACA+TGG - chr4_4:3129424-3129443 None:intergenic 65.0%
CGCGTCATGCGGCTGGAAGA+AGG + chr4_4:3131733-3131752 Msa0664120:CDS 65.0%
TGACGACCGCGTCATGCGGC+TGG + chr4_4:3131726-3131745 Msa0664120:CDS 70.0%
AGGGCGGCCAGAGCAGCCGA+AGG + chr4_4:3129167-3129186 Msa0664120:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 3127994 3132364 3127994 ID=Msa0664120;Name=Msa0664120
chr4_4 mRNA 3127994 3132364 3127994 ID=Msa0664120-mRNA-1;Parent=Msa0664120;Name=Msa0664120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1094|1|1|1|0.75|0.6|5|321|487
chr4_4 exon 3127994 3128684 3127994 ID=Msa0664120-mRNA-1:exon:934;Parent=Msa0664120-mRNA-1
chr4_4 exon 3128714 3130019 3128714 ID=Msa0664120-mRNA-1:exon:935;Parent=Msa0664120-mRNA-1
chr4_4 exon 3131245 3131400 3131245 ID=Msa0664120-mRNA-1:exon:936;Parent=Msa0664120-mRNA-1
chr4_4 exon 3131544 3131755 3131544 ID=Msa0664120-mRNA-1:exon:937;Parent=Msa0664120-mRNA-1
chr4_4 exon 3131851 3132364 3131851 ID=Msa0664120-mRNA-1:exon:938;Parent=Msa0664120-mRNA-1
chr4_4 five_prime_UTR 3127994 3128684 3127994 ID=Msa0664120-mRNA-1:five_prime_utr;Parent=Msa0664120-mRNA-1
chr4_4 five_prime_UTR 3128714 3129116 3128714 ID=Msa0664120-mRNA-1:five_prime_utr;Parent=Msa0664120-mRNA-1
chr4_4 CDS 3129117 3130019 3129117 ID=Msa0664120-mRNA-1:cds;Parent=Msa0664120-mRNA-1
chr4_4 CDS 3131245 3131400 3131245 ID=Msa0664120-mRNA-1:cds;Parent=Msa0664120-mRNA-1
chr4_4 CDS 3131544 3131755 3131544 ID=Msa0664120-mRNA-1:cds;Parent=Msa0664120-mRNA-1
chr4_4 CDS 3131851 3132043 3131851 ID=Msa0664120-mRNA-1:cds;Parent=Msa0664120-mRNA-1
chr4_4 three_prime_UTR 3132044 3132364 3132044 ID=Msa0664120-mRNA-1:three_prime_utr;Parent=Msa0664120-mRNA-1
Gene Sequence

>Msa0664120

ATGGGTTCTAGAATTCCATCTCATCAGCTTAGCAATGGCCTATATGTATCAGGGCGGCCAGAGCAGCCGAAGGAAAGGGTTCCGACAATGACTGCAACGGCCATGCCATATACTGGTGGGGACATAAAAAAGTCAGGAGAATTGGGAAAAATGTTTGATATTCCTACTGATGGCTCAAAATCTAGAAAATCTGGACCAATAACAGGTGCACCATCACGAACAACATCTTTTGGAGGAGCCGGTTCACATTCCGGACCAATTCATCCTAATGCTGCTGCTCGGGCTATGTATACAACTTCAGGTTCCATGTCTATTGGTGGCGCGGCCGGTTCCAATTCACAAAAGAAATCTAATTCCGGGCCGTTGAGTAAGCATGGGGAACCGATTAAAAAGTCTTCTGGTCCTCAGTCTGGTGGAGTAACTCCAACTGGACGTCAACATTCTGGACCTCAAGCTCCTGTTCTTCCGACAACAGGTCTCATTACATCGGGGCCCATAACATCCGGCCCGTTAAACTCTTCTGGTGCTCCTAGGAAAGTGTCCGGTCCTTTGGAAGCGACAGGTTCGATGAAGCTGCAAGGTTCTGCTGTTGCTGTTCCCAATCAAGCTGTCACGGTTCTCAATCAAGGTGATGAATATTCCTTTAGAAGGAATTTTCCAAAGGCCATGTTATGGTTATTAATTCTGCTTTTTGTCATGGGTTTCATTGCTGGCGGTTTTATTCTTGGAGCCGTGCACAATCCTACTCTCCTTATTGTGGTTGTGATTCTCTTTGGCTTAGTTGCTGCGTCTTTCACTTGGAATACTTATTGGGGAAGAAGAGCTATTATGGGATTCATTGCCAATTATCCAGACTCCGAGCTTAGAACTGCAAAAAATGGACAATTTGTGAAAGTCTCTGGGGTCGTTACTTGCGGTAATGTGCCTCTAGAGTCATCTTTCCAGAAAGTCCCCAGATGCGTATATACATCAACAAGTTTATATGAGTATCGAGGATGGGACTCAAAAGCTGCAAATCCCACACATCGGCGACTTTCTTGGGGCCTTAGATTGCTGGAAAGGCGTGTGGTTGATTTTTACATCTCAGATTTCCAGTCTGGTTTAAGGGCATTGGTCAAGACTGGTCATGGATCAAGAGTAACCCCTTATGTCGATGACTCGGTTCTCATCAATGTAAATCCAACCAAAGAAGAGTTATCTCCAGAGTTCCTTCGGTGGTTGGGAGAGAGAAATTTGTCAAGTGACGACCGCGTCATGCGGCTGGAAGAAGGGTATGTTAAAGAAGGAAGCACGGTGAGTGTAATGGGGGTTGTTCACAGGAATGAGAATGTGCTTATGATTGTTCCTCCACCAGAGCCAATTACAACAGGTTGCCACTGGCTCAAATGTATTTTTCCTGCTAGCCTTGAAGGTATAGTCTTAAGATGCGAGGACACGTCCAAGAATGATGTCATACCGGTTTAA
Protein sequence

>Msa0664120

MGSRIPSHQLSNGLYVSGRPEQPKERVPTMTATAMPYTGGDIKKSGELGKMFDIPTDGSKSRKSGPITGAPSRTTSFGGAGSHSGPIHPNAAARAMYTTSGSMSIGGAAGSNSQKKSNSGPLSKHGEPIKKSSGPQSGGVTPTGRQHSGPQAPVLPTTGLITSGPITSGPLNSSGAPRKVSGPLEATGSMKLQGSAVAVPNQAVTVLNQGDEYSFRRNFPKAMLWLLILLFVMGFIAGGFILGAVHNPTLLIVVVILFGLVAASFTWNTYWGRRAIMGFIANYPDSELRTAKNGQFVKVSGVVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPTHRRLSWGLRLLERRVVDFYISDFQSGLRALVKTGHGSRVTPYVDDSVLINVNPTKEELSPEFLRWLGERNLSSDDRVMRLEEGYVKEGSTVSVMGVVHRNENVLMIVPPPEPITTGCHWLKCIFPASLEGIVLRCEDTSKNDVIPV*