AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002580 MtrunA17_Chr4g0071701 97.689 822 17 1 1 822 1 820 0.0 1643
Msa0002580 MtrunA17_Chr2g0298801 52.194 638 216 18 247 822 399 1009 0.0 548
Msa0002580 MtrunA17_Chr2g0298801 76.136 176 34 4 1 172 1 172 4.57e-62 226
Msa0002580 MtrunA17_Chr1g0177421 63.102 187 49 5 1 177 1 177 1.22e-61 223
Msa0002580 MtrunA17_Chr1g0197121 63.636 176 49 5 1 170 1 167 4.83e-57 210
Msa0002580 MtrunA17_Chr4g0073021 51.899 237 103 5 1 234 1 229 3.62e-53 200
Msa0002580 MtrunA17_Chr4g0073021 20.624 577 340 17 291 781 454 998 9.66e-18 88.6
Msa0002580 MtrunA17_Chr3g0105051 45.349 172 79 3 9 166 9 179 3.62e-25 112
Msa0002580 MtrunA17_Chr3g0105051 27.832 309 159 13 449 709 682 974 3.82e-13 73.6
Msa0002580 MtrunA17_Chr5g0430201 38.793 232 125 7 9 226 9 237 9.66e-25 111
Msa0002580 MtrunA17_Chr5g0430201 26.117 291 139 9 449 681 683 955 7.86e-13 72.8
Msa0002580 MtrunA17_Chr3g0113631 42.604 169 83 4 9 166 9 174 6.09e-22 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002580 AT4G29920.2 38.033 610 319 21 247 819 431 1018 2.05e-96 323
Msa0002580 AT4G29920.2 58.506 241 73 7 1 218 1 237 6.11e-61 224
Msa0002580 AT4G29920.1 37.869 610 317 21 247 819 431 1015 1.05e-95 322
Msa0002580 AT4G29920.1 58.506 241 73 7 1 218 1 237 5.26e-61 224
Msa0002580 AT5G57130.1 60.924 238 65 5 1 215 1 233 8.07e-72 255
Msa0002580 AT5G57130.1 33.498 609 322 28 246 820 468 1027 1.86e-64 234
Msa0002580 AT3G52490.1 63.687 179 50 4 1 174 1 169 1.38e-58 214
Msa0002580 AT3G52490.1 24.688 401 223 10 243 587 365 742 1.49e-19 94.7
Msa0002580 AT5G57710.1 55.157 223 77 7 1 213 1 210 2.16e-52 198
Msa0002580 AT4G30350.1 55.172 203 71 4 1 191 1 195 1.45e-46 180
Msa0002580 AT4G30350.1 21.622 592 339 20 264 811 409 919 5.14e-19 92.8
Msa0002580 AT1G07200.2 44.379 169 80 3 9 166 9 174 1.15e-28 124
Msa0002580 AT1G07200.2 22.874 341 201 12 289 589 453 771 8.28e-11 66.6
Msa0002580 AT2G29970.1 44.311 167 83 3 9 166 9 174 1.17e-28 124
Msa0002580 AT2G40130.1 45.455 165 80 3 9 166 9 170 2.20e-28 122
Msa0002580 AT2G40130.1 23.925 372 217 14 447 786 537 874 4.38e-11 67.4
Msa0002580 AT2G40130.2 45.455 165 80 3 9 166 9 170 2.21e-28 122
Msa0002580 AT2G40130.2 23.925 372 217 14 447 786 540 877 4.13e-11 67.4

Find 151 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTGGGATAGTGGGTTTA+TGG 0.097831 1_1:-4526018 Msa0002580:CDS
CTCTTCAATTCTAGGGTTCT+TGG 0.166740 1_1:+4526526 None:intergenic
CCTAATAGCATTTCAGAAAA+TGG 0.180008 1_1:+4526839 None:intergenic
GTTTGGGTGATAATAGAAAT+TGG 0.193442 1_1:-4526040 Msa0002580:CDS
AGAAGAAAACATTGCCTTTC+TGG 0.197917 1_1:-4527684 Msa0002580:CDS
AGTTTAATTTCAATGATAAA+AGG 0.216333 1_1:-4527237 Msa0002580:CDS
AATTCTAGGGTTCTTGGTTT+TGG 0.217523 1_1:+4526532 None:intergenic
TGCCCCTATTCCAGTGATTT+TGG 0.219820 1_1:+4527362 None:intergenic
CTGAGAGAAATTTCATGAAT+TGG 0.260874 1_1:+4526756 None:intergenic
CTCTTGGGGCTCAAGAAATT+AGG 0.268217 1_1:+4526578 None:intergenic
GTTTCAATGTAGCTCTTAAT+AGG 0.268715 1_1:-4529006 Msa0002580:CDS
TTGCTGCTGCTGCTGTTCTA+TGG 0.269718 1_1:+4528883 None:intergenic
AGTAACAAAGAGGGGAATTT+AGG 0.272164 1_1:-4526701 Msa0002580:CDS
TACACTTCCCTCTTTGTCTT+TGG 0.275398 1_1:+4529287 None:intergenic
GCTTGACCCTTCATTCTTCC+AGG 0.278647 1_1:-4528490 Msa0002580:intron
AGAAATTGGGATTGGGATAG+TGG 0.281827 1_1:-4526026 Msa0002580:CDS
CTCTCAGATGGATATGAAAA+AGG 0.296673 1_1:-4526740 Msa0002580:CDS
TAACCGAGTTGAAAAGAAAA+TGG 0.298255 1_1:-4527423 Msa0002580:CDS
TTTAAATGTTATAATAGTTC+TGG 0.304204 1_1:-4528704 Msa0002580:CDS
ATTGTCGACATGGTGTAAAA+TGG 0.305094 1_1:-4525917 Msa0002580:three_prime_UTR
AGAAACACATTTGAATTCAA+TGG 0.324155 1_1:+4526341 None:intergenic
ACTTCATAGAATGAGTAGTT+TGG 0.330186 1_1:-4525962 Msa0002580:exon
GATTCCATTGCAAGCATAGA+AGG 0.340258 1_1:-4527193 Msa0002580:CDS
GGGTTGTTGATTTCTGAAAA+AGG 0.340530 1_1:-4526494 Msa0002580:CDS
CTTCATAGAATGAGTAGTTT+GGG 0.341896 1_1:-4525961 Msa0002580:exon
AGCTGATTTGGTCCTTCAAT+TGG 0.342833 1_1:-4526891 Msa0002580:CDS
CTAATAGCATTTCAGAAAAT+GGG 0.352190 1_1:+4526840 None:intergenic
CTAACAAAATGTTTGAGAAA+TGG 0.353619 1_1:-4526136 Msa0002580:CDS
ATTCTCTTGTGTTGGCTAGA+AGG 0.358333 1_1:-4529177 Msa0002580:CDS
TTTGAAGGAACTTAGTCTTA+AGG 0.360363 1_1:+4529105 None:intergenic
TTTCAGACAGAACAATTTCA+TGG 0.360555 1_1:-4528609 Msa0002580:CDS
AAAGCCCTTTAGCAGTAATA+AGG 0.361117 1_1:-4527788 Msa0002580:CDS
TGGCACAGAAGAACAAAATA+AGG 0.368675 1_1:-4527650 Msa0002580:intron
GCACCAAAATCACTGGAATA+GGG 0.370902 1_1:-4527365 Msa0002580:CDS
AGCACCAAAATCACTGGAAT+AGG 0.372688 1_1:-4527366 Msa0002580:CDS
TTTGGGTGATAATAGAAATT+GGG 0.375578 1_1:-4526039 Msa0002580:CDS
TAAGACTAAGTTCCTTCAAA+AGG 0.375696 1_1:-4529102 Msa0002580:CDS
ATCATTGAAATTAAACTCAA+TGG 0.376365 1_1:+4527243 None:intergenic
TGAGAGAAATTTCATGAATT+GGG 0.385237 1_1:+4526757 None:intergenic
CCTTTCTGGCTTCAGTCTCA+TGG 0.390835 1_1:-4527670 Msa0002580:CDS
TTGTTTCCAGCATATGAGAT+AGG 0.393515 1_1:+4527809 None:intergenic
TTGATGATCCTAGTGTTAGT+AGG 0.397262 1_1:-4528805 Msa0002580:CDS
GTTCTTCTCTTCAATGCTTG+TGG 0.404826 1_1:+4526646 None:intergenic
ATGAGTAGTTTGGGTATTGA+GGG 0.408214 1_1:-4525952 Msa0002580:exon
AATTGATTGACATAACATAA+TGG 0.409546 1_1:+4525828 None:intergenic
TTTCATTCTCTTCAATTCTA+GGG 0.410585 1_1:+4526519 None:intergenic
CTGTGATTCTCACTAGTTGA+AGG 0.411339 1_1:+4528653 None:intergenic
CAGTTTAGAAACAGTTAACT+TGG 0.417821 1_1:-4526093 Msa0002580:CDS
GTGATAATAGAAATTGGGAT+TGG 0.418688 1_1:-4526034 Msa0002580:CDS
ATGAAAGAGCTCTAGTAAAC+AGG 0.418818 1_1:+4529391 None:intergenic
CAGCTTTCATGTTCAGATCA+AGG 0.421676 1_1:+4526423 None:intergenic
TAATTAACTTGGATACTCTT+AGG 0.423030 1_1:+4525984 None:intergenic
AGTAGGGTTATGAGAGAAGC+TGG 0.424536 1_1:-4528788 Msa0002580:CDS
GTTTAATTTCAATGATAAAA+GGG 0.427762 1_1:-4527236 Msa0002580:CDS
TGCACCTTATTACTGCTAAA+GGG 0.429521 1_1:+4527784 None:intergenic
AATGAGTAGTTTGGGTATTG+AGG 0.431544 1_1:-4525953 Msa0002580:exon
GTGGATGTTGTGAAGTTTGA+TGG 0.431778 1_1:+4529053 None:intergenic
AGAATTGAAGAGAATGAAAA+GGG 0.443195 1_1:-4526515 Msa0002580:CDS
TTGTCGACATGGTGTAAAAT+GGG 0.447560 1_1:-4525916 Msa0002580:three_prime_UTR
CAATGCAGCAATGAGAGCAT+TGG 0.451420 1_1:+4528937 None:intergenic
TAGAATTGAAGAGAATGAAA+AGG 0.451533 1_1:-4526516 Msa0002580:CDS
TTCATGAAATTTCTCTCAGA+TGG 0.451801 1_1:-4526752 Msa0002580:CDS
TTTGAAGCATTCTCTTGTGT+TGG 0.454108 1_1:-4529185 Msa0002580:CDS
AATATTACCTGGAAGAATGA+AGG 0.464963 1_1:+4528483 None:intergenic
ATGCACCTTATTACTGCTAA+AGG 0.466662 1_1:+4527783 None:intergenic
GGGTCATTTGAAGATGTTTG+TGG 0.467210 1_1:-4526233 Msa0002580:CDS
TGATAATAGAAATTGGGATT+GGG 0.478557 1_1:-4526033 Msa0002580:CDS
AAGACTAAGTTCCTTCAAAA+GGG 0.480191 1_1:-4529101 Msa0002580:CDS
ATCAAAGGAGAAGGTGTTGT+TGG 0.481111 1_1:+4528980 None:intergenic
AAAATGAAATTTCATTTACA+TGG 0.483113 1_1:-4526988 Msa0002580:CDS
TGAAACTTTAAGTAACAAAG+AGG 0.484462 1_1:-4526711 Msa0002580:CDS
ACTGAGTTGACGAGTACATC+AGG 0.485948 1_1:-4528521 Msa0002580:CDS
TTTACCTTCTATGCTTGCAA+TGG 0.488616 1_1:+4527189 None:intergenic
TGATGATCCTAGTGTTAGTA+GGG 0.489344 1_1:-4528804 Msa0002580:CDS
GTAATATTCATCTTAACAAA+AGG 0.492526 1_1:-4526674 Msa0002580:CDS
ATTCTATGAAGTAATTAACT+TGG 0.497847 1_1:+4525973 None:intergenic
GACAAAGAGGGAAGTGTAGT+GGG 0.500303 1_1:-4529282 Msa0002580:five_prime_UTR
ACGGAATCGAGGTGTAAGAT+TGG 0.504184 1_1:+4527285 None:intergenic
AGATGCTCATCTTGGAATCA+AGG 0.504959 1_1:+4527839 None:intergenic
GTTCTGAGAGATGCTCATCT+TGG 0.505466 1_1:+4527831 None:intergenic
CAATGGTGCTGCATGATTGT+TGG 0.507077 1_1:+4527260 None:intergenic
AACATAATGGTTACAAGAGA+AGG 0.509994 1_1:+4525841 None:intergenic
GAACATGAAAGCTGATGAAG+AGG 0.511062 1_1:-4526414 Msa0002580:CDS
ACAAAGAGGGAAGTGTAGTG+GGG 0.511542 1_1:-4529281 Msa0002580:five_prime_UTR
GAAATTGGGATTGGGATAGT+GGG 0.511786 1_1:-4526025 Msa0002580:CDS
GAAGGCTGAGAGTGAATCAA+AGG 0.518124 1_1:+4528965 None:intergenic
TGTTGTGAAGTTTGATGGTG+TGG 0.518229 1_1:+4529058 None:intergenic
ACAAACAGCACCAAAATCAC+TGG 0.519494 1_1:-4527372 Msa0002580:CDS
TCAGAACCTATCTCATATGC+TGG 0.523908 1_1:-4527815 Msa0002580:CDS
CCATGAGACTGAAGCCAGAA+AGG 0.527419 1_1:+4527670 None:intergenic
AGCTTTCATGTTCAGATCAA+GGG 0.528546 1_1:+4526424 None:intergenic
GAGAAAACATCAACAGCTTG+TGG 0.530991 1_1:-4526810 Msa0002580:CDS
AACAGTTAACTTGGGAGGGA+AGG 0.532413 1_1:-4526084 Msa0002580:CDS
ACACAAGTTCAGATAAAGAC+AGG 0.536618 1_1:-4526289 Msa0002580:CDS
GAAACTTTAAGTAACAAAGA+GGG 0.538982 1_1:-4526710 Msa0002580:CDS
CACCAAAATCACTGGAATAG+GGG 0.539949 1_1:-4527364 Msa0002580:CDS
TAGAAACAGTTAACTTGGGA+GGG 0.540519 1_1:-4526088 Msa0002580:CDS
ACGAGTACATCAGGTGGACT+TGG 0.541210 1_1:-4528512 Msa0002580:CDS
TGATGATTCAAGTGAAAAGG+TGG 0.542844 1_1:-4527137 Msa0002580:CDS
ATATATCAAGTGATGCGCTC+AGG 0.544488 1_1:-4529253 Msa0002580:exon
TGTTGATTTGGTATCAAACA+AGG 0.544854 1_1:+4527015 None:intergenic
TGAAGCAGCCTCTGCTGTGA+GGG 0.545563 1_1:+4529210 None:intergenic
TGATGCTTGATGAATTATTG+AGG 0.548945 1_1:+4527320 None:intergenic
GCTCAATTTCTCAGACCTGC+AGG 0.549147 1_1:-4527709 Msa0002580:CDS
AAATGTTATAATAGTTCTGG+TGG 0.549816 1_1:-4528701 Msa0002580:CDS
CAATGATGATTCAAGTGAAA+AGG 0.551243 1_1:-4527140 Msa0002580:CDS
AAACTGTTATCAATTTGTTG+TGG 0.554067 1_1:-4526619 Msa0002580:CDS
CAAAGAGGGAAGTGTAGTGG+GGG 0.555119 1_1:-4529280 Msa0002580:five_prime_UTR
CTTGCAATGGAATCAAAGAC+TGG 0.557776 1_1:+4527202 None:intergenic
ATATTACCTGGAAGAATGAA+GGG 0.561317 1_1:+4528484 None:intergenic
TGTTCTGTCTGAAACTGCTA+AGG 0.561994 1_1:+4528618 None:intergenic
GCACAAGCTCATCAAAGAAG+AGG 0.562580 1_1:-4528908 Msa0002580:CDS
TCACTAGTTGAAGGTGAACA+TGG 0.565455 1_1:+4528662 None:intergenic
GAATCGAGGTGTAAGATTGG+AGG 0.571539 1_1:+4527288 None:intergenic
TTCTTGTAAAATTGTCGACA+TGG 0.573049 1_1:-4525927 Msa0002580:three_prime_UTR
TTAGAAACAGTTAACTTGGG+AGG 0.573524 1_1:-4526089 Msa0002580:CDS
AAACTTTAAGTAACAAAGAG+GGG 0.574195 1_1:-4526709 Msa0002580:CDS
TGAGAGTGAATCAAAGGAGA+AGG 0.577096 1_1:+4528971 None:intergenic
CTCATAACCCTACTAACACT+AGG 0.579503 1_1:+4528797 None:intergenic
AGTTTAGAAACAGTTAACTT+GGG 0.581458 1_1:-4526092 Msa0002580:CDS
GTTAACTTGGGAGGGAAGGA+AGG 0.581750 1_1:-4526080 Msa0002580:CDS
ACTAGCTTCCAAAGACAAAG+AGG 0.584079 1_1:-4529295 Msa0002580:five_prime_UTR
ATATTCATCTTAACAAAAGG+TGG 0.591782 1_1:-4526671 Msa0002580:CDS
GTAAAGATTAGTCTTGCACT+TGG 0.591838 1_1:-4527163 Msa0002580:CDS
AAAGTGATGGCTACATGTAG+AGG 0.593224 1_1:+4529133 None:intergenic
AGACAAAGAGGGAAGTGTAG+TGG 0.599661 1_1:-4529283 Msa0002580:five_prime_UTR
TCAAGAGCTCTAGATTGAAG+TGG 0.600534 1_1:+4529034 None:intergenic
TCTTAAGGTAAGTAAAGTGA+TGG 0.602666 1_1:+4529120 None:intergenic
CTTGTGTTGGCTAGAAGGAG+AGG 0.606431 1_1:-4529172 Msa0002580:CDS
CTGAAGCAGCCTCTGCTGTG+AGG 0.607118 1_1:+4529209 None:intergenic
ATGAGAGCATTGGAAAGTGA+AGG 0.611410 1_1:+4528947 None:intergenic
GGAATAGTTTCAGATTGCCA+TGG 0.614508 1_1:+4527052 None:intergenic
GATTGTTGGCGACGGAATCG+AGG 0.618402 1_1:+4527274 None:intergenic
TGCTGCATGATTGTTGGCGA+CGG 0.618752 1_1:+4527266 None:intergenic
TAGCAGTAATAAGGTGCATG+AGG 0.621940 1_1:-4527779 Msa0002580:CDS
GTGATTGAAGACATGTGTGT+GGG 0.624972 1_1:-4526173 Msa0002580:CDS
TAATAGCATTTCAGAAAATG+GGG 0.629233 1_1:+4526841 None:intergenic
CTAGCTTCCAAAGACAAAGA+GGG 0.630180 1_1:-4529294 Msa0002580:five_prime_UTR
GATGATTCAAGTGAAAAGGT+GGG 0.632079 1_1:-4527136 Msa0002580:CDS
TATCAAGTGATGCGCTCAGG+AGG 0.632949 1_1:-4529250 Msa0002580:exon
TGTTATAATAGTTCTGGTGG+TGG 0.635592 1_1:-4528698 Msa0002580:CDS
AAAGCTGATGAAGAGGAAGA+TGG 0.637095 1_1:-4526407 Msa0002580:CDS
GCAGCAGACCCTCACAGCAG+AGG 0.647393 1_1:-4529218 Msa0002580:CDS
TAGAAGGAGAGGTCATCCAC+AGG 0.649362 1_1:-4529161 Msa0002580:CDS
AAAGAGGGAAGTGTAGTGGG+GGG 0.656972 1_1:-4529279 Msa0002580:five_prime_UTR
TGATTGAAGACATGTGTGTG+GGG 0.676956 1_1:-4526172 Msa0002580:CDS
ACATGTAGAGGAGTGACCTG+TGG 0.684775 1_1:+4529145 None:intergenic
GGTGATTGAAGACATGTGTG+TGG 0.690099 1_1:-4526174 Msa0002580:CDS
TATTGCAAGAGAATGTGCCA+TGG 0.693666 1_1:-4527069 Msa0002580:CDS
GAGTTGACGAGTACATCAGG+TGG 0.710146 1_1:-4528518 Msa0002580:CDS
GAATTGAAGAGAATGAAAAG+GGG 0.732384 1_1:-4526514 Msa0002580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATGTTATAATAGTTC+TGG - chr1_1:4526514-4526533 Msa0002580:CDS 15.0%
!!! TTCTTAATTTGTTTGATTTA+AGG - chr1_1:4526879-4526898 Msa0002580:CDS 15.0%
!!! AGTTTAATTTCAATGATAAA+AGG - chr1_1:4527981-4528000 Msa0002580:intron 15.0%
!!! GTTTAATTTCAATGATAAAA+GGG - chr1_1:4527982-4528001 Msa0002580:intron 15.0%
!! AAAATGAAATTTCATTTACA+TGG - chr1_1:4528230-4528249 Msa0002580:intron 15.0%
!!! TTTTTTCTGTTTAAGATTAA+AGG - chr1_1:4528964-4528983 Msa0002580:CDS 15.0%
!!! TTTTTCTGTTTAAGATTAAA+GGG - chr1_1:4528965-4528984 Msa0002580:CDS 15.0%
!! GTTTCTTTGATAGAAAAAAT+AGG - chr1_1:4525889-4525908 Msa0002580:three_prime_UTR 20.0%
!! CATTTAAAAACAGAATTAGA+AGG + chr1_1:4526502-4526521 None:intergenic 20.0%
!! AAGCAAAATAAAATATTACC+TGG + chr1_1:4526749-4526768 None:intergenic 20.0%
!!! TGTTTGATTTAAGGTATAAA+AGG - chr1_1:4526888-4526907 Msa0002580:CDS 20.0%
!!! TTATGTTTACCTTTCTTTTT+TGG + chr1_1:4526939-4526958 None:intergenic 20.0%
!! CCATAATTAAGCAAATAAAT+AGG + chr1_1:4527326-4527345 None:intergenic 20.0%
!! CCTATTTATTTGCTTAATTA+TGG - chr1_1:4527323-4527342 Msa0002580:CDS 20.0%
!!! ATGAATAATTCAACATTTTC+AGG - chr1_1:4527766-4527785 Msa0002580:CDS 20.0%
!! ATCATTGAAATTAAACTCAA+TGG + chr1_1:4527978-4527997 None:intergenic 20.0%
!!! TTCATTTTGTTTTGTTGATT+TGG + chr1_1:4528218-4528237 None:intergenic 20.0%
!!! TTTACATGGTTATTTTTACA+AGG - chr1_1:4528244-4528263 Msa0002580:intron 20.0%
!! GTAATATTCATCTTAACAAA+AGG - chr1_1:4528544-4528563 Msa0002580:CDS 20.0%
!!! TATACATTTTAGACTTTGTT+TGG - chr1_1:4529161-4529180 Msa0002580:CDS 20.0%
!!! ATACATTTTAGACTTTGTTT+GGG - chr1_1:4529162-4529181 Msa0002580:CDS 20.0%
!! ATTCTATGAAGTAATTAACT+TGG + chr1_1:4529248-4529267 None:intergenic 20.0%
!! AATTGATTGACATAACATAA+TGG + chr1_1:4529393-4529412 None:intergenic 20.0%
!!! TTTTTTCTATCAAAGAAACG+TGG + chr1_1:4525888-4525907 None:intergenic 25.0%
!!! AAATGTTATAATAGTTCTGG+TGG - chr1_1:4526517-4526536 Msa0002580:CDS 25.0%
! TATAACACTTAGTACATGTT+TGG - chr1_1:4526779-4526798 Msa0002580:CDS 25.0%
! ACACATGTTATGTTACTAAA+AGG + chr1_1:4526860-4526879 None:intergenic 25.0%
! TAAATGCAACCAAAAAAGAA+AGG - chr1_1:4526927-4526946 Msa0002580:CDS 25.0%
!!! TCAGTCAAATTATTTTGAGT+TGG - chr1_1:4527177-4527196 Msa0002580:CDS 25.0%
! AAAGACTACACTTTATCTAA+AGG - chr1_1:4527208-4527227 Msa0002580:CDS 25.0%
!!! TTGAGCTTCTTTTTCATAAT+TGG + chr1_1:4527495-4527514 None:intergenic 25.0%
!! ATTCCATTTTCTTTTCAACT+CGG + chr1_1:4527801-4527820 None:intergenic 25.0%
!!! TTTTTAGCATATCCAATTGA+AGG + chr1_1:4528342-4528361 None:intergenic 25.0%
! TCAATTGGATATGCTAAAAA+AGG - chr1_1:4528342-4528361 Msa0002580:intron 25.0%
! TAATAGCATTTCAGAAAATG+GGG + chr1_1:4528380-4528399 None:intergenic 25.0%
! CTAATAGCATTTCAGAAAAT+GGG + chr1_1:4528381-4528400 None:intergenic 25.0%
! TGAGAGAAATTTCATGAATT+GGG + chr1_1:4528464-4528483 None:intergenic 25.0%
! TGAAACTTTAAGTAACAAAG+AGG - chr1_1:4528507-4528526 Msa0002580:CDS 25.0%
! GAAACTTTAAGTAACAAAGA+GGG - chr1_1:4528508-4528527 Msa0002580:CDS 25.0%
! AAACTTTAAGTAACAAAGAG+GGG - chr1_1:4528509-4528528 Msa0002580:CDS 25.0%
! ATATTCATCTTAACAAAAGG+TGG - chr1_1:4528547-4528566 Msa0002580:CDS 25.0%
!!! AAACTGTTATCAATTTGTTG+TGG - chr1_1:4528599-4528618 Msa0002580:CDS 25.0%
! TTTCATTCTCTTCAATTCTA+GGG + chr1_1:4528702-4528721 None:intergenic 25.0%
!! TTTTCATTCTCTTCAATTCT+AGG + chr1_1:4528703-4528722 None:intergenic 25.0%
! TAGAATTGAAGAGAATGAAA+AGG - chr1_1:4528702-4528721 Msa0002580:CDS 25.0%
! AGAATTGAAGAGAATGAAAA+GGG - chr1_1:4528703-4528722 Msa0002580:CDS 25.0%
! AGAAACACATTTGAATTCAA+TGG + chr1_1:4528880-4528899 None:intergenic 25.0%
!!! GAATTTTAGTGTAGATGAAA+AGG - chr1_1:4529023-4529042 Msa0002580:CDS 25.0%
! CTAACAAAATGTTTGAGAAA+TGG - chr1_1:4529082-4529101 Msa0002580:CDS 25.0%
! AGTTTAGAAACAGTTAACTT+GGG - chr1_1:4529126-4529145 Msa0002580:CDS 25.0%
! TTTGGGTGATAATAGAAATT+GGG - chr1_1:4529179-4529198 Msa0002580:CDS 25.0%
! TGATAATAGAAATTGGGATT+GGG - chr1_1:4529185-4529204 Msa0002580:CDS 25.0%
!! TAATTAACTTGGATACTCTT+AGG + chr1_1:4529237-4529256 None:intergenic 25.0%
TCTTAAGGTAAGTAAAGTGA+TGG + chr1_1:4526101-4526120 None:intergenic 30.0%
!! TTTGAAGGAACTTAGTCTTA+AGG + chr1_1:4526116-4526135 None:intergenic 30.0%
TAAGACTAAGTTCCTTCAAA+AGG - chr1_1:4526116-4526135 Msa0002580:CDS 30.0%
AAGACTAAGTTCCTTCAAAA+GGG - chr1_1:4526117-4526136 Msa0002580:CDS 30.0%
GTTTCAATGTAGCTCTTAAT+AGG - chr1_1:4526212-4526231 Msa0002580:CDS 30.0%
TTTCAGACAGAACAATTTCA+TGG - chr1_1:4526609-4526628 Msa0002580:CDS 30.0%
ATATTACCTGGAAGAATGAA+GGG + chr1_1:4526737-4526756 None:intergenic 30.0%
AATATTACCTGGAAGAATGA+AGG + chr1_1:4526738-4526757 None:intergenic 30.0%
!! ACACATGTTAAAAGCATTGT+TGG - chr1_1:4527066-4527085 Msa0002580:CDS 30.0%
!! ATGTTAAAAGCATTGTTGGT+TGG - chr1_1:4527070-4527089 Msa0002580:CDS 30.0%
ATAATGCAATCATCGTGTAT+TGG + chr1_1:4527650-4527669 None:intergenic 30.0%
CACATCTATGATAGTACTAT+TGG - chr1_1:4527740-4527759 Msa0002580:CDS 30.0%
! TAACCGAGTTGAAAAGAAAA+TGG - chr1_1:4527795-4527814 Msa0002580:CDS 30.0%
TGATGCTTGATGAATTATTG+AGG + chr1_1:4527901-4527920 None:intergenic 30.0%
CAATGATGATTCAAGTGAAA+AGG - chr1_1:4528078-4528097 Msa0002580:intron 30.0%
! AACAAGGCTTTTGATATTGA+AGG + chr1_1:4528190-4528209 None:intergenic 30.0%
!! TGTTGATTTGGTATCAAACA+AGG + chr1_1:4528206-4528225 None:intergenic 30.0%
CCTAATAGCATTTCAGAAAA+TGG + chr1_1:4528382-4528401 None:intergenic 30.0%
!!! CCATTTTCTGAAATGCTATT+AGG - chr1_1:4528379-4528398 Msa0002580:intron 30.0%
CTGAGAGAAATTTCATGAAT+TGG + chr1_1:4528465-4528484 None:intergenic 30.0%
TTCATGAAATTTCTCTCAGA+TGG - chr1_1:4528466-4528485 Msa0002580:intron 30.0%
! TCAAATTCAGCTTTTCTCTT+GGG + chr1_1:4528658-4528677 None:intergenic 30.0%
! ATCAAATTCAGCTTTTCTCT+TGG + chr1_1:4528659-4528678 None:intergenic 30.0%
GAATTGAAGAGAATGAAAAG+GGG - chr1_1:4528704-4528723 Msa0002580:CDS 30.0%
! TTCTGAAAAAGGAAGCAAAA+AGG - chr1_1:4528735-4528754 Msa0002580:CDS 30.0%
TGTTTGTGGTAAGAAAAATG+TGG - chr1_1:4528999-4529018 Msa0002580:CDS 30.0%
CAGTTTAGAAACAGTTAACT+TGG - chr1_1:4529125-4529144 Msa0002580:CDS 30.0%
GTTTGGGTGATAATAGAAAT+TGG - chr1_1:4529178-4529197 Msa0002580:CDS 30.0%
GTGATAATAGAAATTGGGAT+TGG - chr1_1:4529184-4529203 Msa0002580:CDS 30.0%
ACTTCATAGAATGAGTAGTT+TGG - chr1_1:4529256-4529275 Msa0002580:exon 30.0%
CTTCATAGAATGAGTAGTTT+GGG - chr1_1:4529257-4529276 Msa0002580:exon 30.0%
TTCTTGTAAAATTGTCGACA+TGG - chr1_1:4529291-4529310 Msa0002580:five_prime_UTR 30.0%
AACATAATGGTTACAAGAGA+AGG + chr1_1:4529380-4529399 None:intergenic 30.0%
! ATGAAAGAGCTCTAGTAAAC+AGG + chr1_1:4525830-4525849 None:intergenic 35.0%
! TTTGAAGCATTCTCTTGTGT+TGG - chr1_1:4526033-4526052 Msa0002580:CDS 35.0%
! TTGATGATCCTAGTGTTAGT+AGG - chr1_1:4526413-4526432 Msa0002580:CDS 35.0%
TGATGATCCTAGTGTTAGTA+GGG - chr1_1:4526414-4526433 Msa0002580:CDS 35.0%
!! TGTTATAATAGTTCTGGTGG+TGG - chr1_1:4526520-4526539 Msa0002580:CDS 35.0%
CTAAAAGGTTAGTGCATGTT+TGG + chr1_1:4526845-4526864 None:intergenic 35.0%
!! AAAGTGTTGTCTAGTTCTGA+TGG - chr1_1:4526972-4526991 Msa0002580:CDS 35.0%
!! ATTTGTTGTGCAATGTGTTG+AGG - chr1_1:4527014-4527033 Msa0002580:CDS 35.0%
! AATGTGTTGAGGAGTATGTA+CGG - chr1_1:4527025-4527044 Msa0002580:CDS 35.0%
TTGACTGATTAACGTGTAAG+AGG + chr1_1:4527165-4527184 None:intergenic 35.0%
TTGTTTCCAGCATATGAGAT+AGG + chr1_1:4527412-4527431 None:intergenic 35.0%
AAAGCCCTTTAGCAGTAATA+AGG - chr1_1:4527430-4527449 Msa0002580:CDS 35.0%
TGCACCTTATTACTGCTAAA+GGG + chr1_1:4527437-4527456 None:intergenic 35.0%
ATGCACCTTATTACTGCTAA+AGG + chr1_1:4527438-4527457 None:intergenic 35.0%
AGAAGAAAACATTGCCTTTC+TGG - chr1_1:4527534-4527553 Msa0002580:intron 35.0%
TGGCACAGAAGAACAAAATA+AGG - chr1_1:4527568-4527587 Msa0002580:intron 35.0%
!!! GATTTTGGTGCTGTTTGTTT+TGG + chr1_1:4527844-4527863 None:intergenic 35.0%
TTTACCTTCTATGCTTGCAA+TGG + chr1_1:4528032-4528051 None:intergenic 35.0%
!! GTAAAGATTAGTCTTGCACT+TGG - chr1_1:4528055-4528074 Msa0002580:intron 35.0%
TGATGATTCAAGTGAAAAGG+TGG - chr1_1:4528081-4528100 Msa0002580:intron 35.0%
GATGATTCAAGTGAAAAGGT+GGG - chr1_1:4528082-4528101 Msa0002580:intron 35.0%
! GCTATTGCAGAATCAGTTTT+TGG - chr1_1:4528301-4528320 Msa0002580:intron 35.0%
!!! AGTTTTTGGTTCAGCTGATT+TGG - chr1_1:4528315-4528334 Msa0002580:intron 35.0%
CTCTCAGATGGATATGAAAA+AGG - chr1_1:4528478-4528497 Msa0002580:intron 35.0%
AGTAACAAAGAGGGGAATTT+AGG - chr1_1:4528517-4528536 Msa0002580:CDS 35.0%
! CAAATTCAGCTTTTCTCTTG+GGG + chr1_1:4528657-4528676 None:intergenic 35.0%
!!! AATTCTAGGGTTCTTGGTTT+TGG + chr1_1:4528689-4528708 None:intergenic 35.0%
!! GGGTTGTTGATTTCTGAAAA+AGG - chr1_1:4528724-4528743 Msa0002580:CDS 35.0%
AGCTTTCATGTTCAGATCAA+GGG + chr1_1:4528797-4528816 None:intergenic 35.0%
ACACAAGTTCAGATAAAGAC+AGG - chr1_1:4528929-4528948 Msa0002580:CDS 35.0%
! TTAGAAACAGTTAACTTGGG+AGG - chr1_1:4529129-4529148 Msa0002580:CDS 35.0%
! TAGAAACAGTTAACTTGGGA+GGG - chr1_1:4529130-4529149 Msa0002580:CDS 35.0%
! AATGAGTAGTTTGGGTATTG+AGG - chr1_1:4529265-4529284 Msa0002580:five_prime_UTR 35.0%
!! ATGAGTAGTTTGGGTATTGA+GGG - chr1_1:4529266-4529285 Msa0002580:five_prime_UTR 35.0%
ATTGTCGACATGGTGTAAAA+TGG - chr1_1:4529301-4529320 Msa0002580:five_prime_UTR 35.0%
TTGTCGACATGGTGTAAAAT+GGG - chr1_1:4529302-4529321 Msa0002580:five_prime_UTR 35.0%
! ACTAGCTTCCAAAGACAAAG+AGG - chr1_1:4525923-4525942 Msa0002580:three_prime_UTR 40.0%
CTAGCTTCCAAAGACAAAGA+GGG - chr1_1:4525924-4525943 Msa0002580:three_prime_UTR 40.0%
TACACTTCCCTCTTTGTCTT+TGG + chr1_1:4525934-4525953 None:intergenic 40.0%
ATATATCAAGTGATGCGCTC+AGG - chr1_1:4525965-4525984 Msa0002580:exon 40.0%
!! ATTCTCTTGTGTTGGCTAGA+AGG - chr1_1:4526041-4526060 Msa0002580:CDS 40.0%
AAAGTGATGGCTACATGTAG+AGG + chr1_1:4526088-4526107 None:intergenic 40.0%
! CTTAAGACAAGCCCTTTTGA+AGG + chr1_1:4526131-4526150 None:intergenic 40.0%
!! TGTTGTGAAGTTTGATGGTG+TGG + chr1_1:4526163-4526182 None:intergenic 40.0%
GTGGATGTTGTGAAGTTTGA+TGG + chr1_1:4526168-4526187 None:intergenic 40.0%
!! TCAAGAGCTCTAGATTGAAG+TGG + chr1_1:4526187-4526206 None:intergenic 40.0%
!! ATCAAAGGAGAAGGTGTTGT+TGG + chr1_1:4526241-4526260 None:intergenic 40.0%
TGAGAGTGAATCAAAGGAGA+AGG + chr1_1:4526250-4526269 None:intergenic 40.0%
!! ATGAGAGCATTGGAAAGTGA+AGG + chr1_1:4526274-4526293 None:intergenic 40.0%
CTCATAACCCTACTAACACT+AGG + chr1_1:4526424-4526443 None:intergenic 40.0%
TCACTAGTTGAAGGTGAACA+TGG + chr1_1:4526559-4526578 None:intergenic 40.0%
CTGTGATTCTCACTAGTTGA+AGG + chr1_1:4526568-4526587 None:intergenic 40.0%
! TGTTCTGTCTGAAACTGCTA+AGG + chr1_1:4526603-4526622 None:intergenic 40.0%
! GTCAACTCAGTTCTTTTTGG+TGG + chr1_1:4526688-4526707 None:intergenic 40.0%
! CTCGTCAACTCAGTTCTTTT+TGG + chr1_1:4526691-4526710 None:intergenic 40.0%
TATGTACGGTTACTGAGCTA+TGG - chr1_1:4527039-4527058 Msa0002580:CDS 40.0%
!! AGCATTGTTGGTTGGTAGTA+AGG - chr1_1:4527078-4527097 Msa0002580:CDS 40.0%
AGATGCTCATCTTGGAATCA+AGG + chr1_1:4527382-4527401 None:intergenic 40.0%
TCAGAACCTATCTCATATGC+TGG - chr1_1:4527403-4527422 Msa0002580:CDS 40.0%
TAGCAGTAATAAGGTGCATG+AGG - chr1_1:4527439-4527458 Msa0002580:intron 40.0%
! AATGTTTTCTTCTGTCCTGC+AGG + chr1_1:4527527-4527546 None:intergenic 40.0%
!!! GTTTGTTTTGGTGTAGACAG+TGG + chr1_1:4527832-4527851 None:intergenic 40.0%
ACAAACAGCACCAAAATCAC+TGG - chr1_1:4527846-4527865 Msa0002580:intron 40.0%
AGCACCAAAATCACTGGAAT+AGG - chr1_1:4527852-4527871 Msa0002580:intron 40.0%
GCACCAAAATCACTGGAATA+GGG - chr1_1:4527853-4527872 Msa0002580:intron 40.0%
CACCAAAATCACTGGAATAG+GGG - chr1_1:4527854-4527873 Msa0002580:intron 40.0%
CTTGCAATGGAATCAAAGAC+TGG + chr1_1:4528019-4528038 None:intergenic 40.0%
GATTCCATTGCAAGCATAGA+AGG - chr1_1:4528025-4528044 Msa0002580:intron 40.0%
TATTGCAAGAGAATGTGCCA+TGG - chr1_1:4528149-4528168 Msa0002580:intron 40.0%
GGAATAGTTTCAGATTGCCA+TGG + chr1_1:4528169-4528188 None:intergenic 40.0%
!! AGCTGATTTGGTCCTTCAAT+TGG - chr1_1:4528327-4528346 Msa0002580:intron 40.0%
GAGAAAACATCAACAGCTTG+TGG - chr1_1:4528408-4528427 Msa0002580:intron 40.0%
GTTCTTCTCTTCAATGCTTG+TGG + chr1_1:4528575-4528594 None:intergenic 40.0%
!! CTCTTCAATTCTAGGGTTCT+TGG + chr1_1:4528695-4528714 None:intergenic 40.0%
CAGCTTTCATGTTCAGATCA+AGG + chr1_1:4528798-4528817 None:intergenic 40.0%
GAACATGAAAGCTGATGAAG+AGG - chr1_1:4528804-4528823 Msa0002580:CDS 40.0%
AAAGCTGATGAAGAGGAAGA+TGG - chr1_1:4528811-4528830 Msa0002580:CDS 40.0%
GGGTCATTTGAAGATGTTTG+TGG - chr1_1:4528985-4529004 Msa0002580:CDS 40.0%
GTGATTGAAGACATGTGTGT+GGG - chr1_1:4529045-4529064 Msa0002580:CDS 40.0%
TGATTGAAGACATGTGTGTG+GGG - chr1_1:4529046-4529065 Msa0002580:CDS 40.0%
AGAAATTGGGATTGGGATAG+TGG - chr1_1:4529192-4529211 Msa0002580:CDS 40.0%
GAAATTGGGATTGGGATAGT+GGG - chr1_1:4529193-4529212 Msa0002580:CDS 40.0%
! AGACAAAGAGGGAAGTGTAG+TGG - chr1_1:4525935-4525954 Msa0002580:three_prime_UTR 45.0%
! GACAAAGAGGGAAGTGTAGT+GGG - chr1_1:4525936-4525955 Msa0002580:three_prime_UTR 45.0%
! ACAAAGAGGGAAGTGTAGTG+GGG - chr1_1:4525937-4525956 Msa0002580:three_prime_UTR 45.0%
GAAGGCTGAGAGTGAATCAA+AGG + chr1_1:4526256-4526275 None:intergenic 45.0%
! CAATGCAGCAATGAGAGCAT+TGG + chr1_1:4526284-4526303 None:intergenic 45.0%
GCACAAGCTCATCAAAGAAG+AGG - chr1_1:4526310-4526329 Msa0002580:CDS 45.0%
AGTAGGGTTATGAGAGAAGC+TGG - chr1_1:4526430-4526449 Msa0002580:CDS 45.0%
! ACTGAGTTGACGAGTACATC+AGG - chr1_1:4526697-4526716 Msa0002580:CDS 45.0%
!! GTTCTGAGAGATGCTCATCT+TGG + chr1_1:4527390-4527409 None:intergenic 45.0%
! TGCCCCTATTCCAGTGATTT+TGG + chr1_1:4527859-4527878 None:intergenic 45.0%
GAATCGAGGTGTAAGATTGG+AGG + chr1_1:4527933-4527952 None:intergenic 45.0%
ACGGAATCGAGGTGTAAGAT+TGG + chr1_1:4527936-4527955 None:intergenic 45.0%
!! CAATGGTGCTGCATGATTGT+TGG + chr1_1:4527961-4527980 None:intergenic 45.0%
CTCTTGGGGCTCAAGAAATT+AGG + chr1_1:4528643-4528662 None:intergenic 45.0%
GGTGATTGAAGACATGTGTG+TGG - chr1_1:4529044-4529063 Msa0002580:CDS 45.0%
! AACAGTTAACTTGGGAGGGA+AGG - chr1_1:4529134-4529153 Msa0002580:CDS 45.0%
!! GGATTGGGATAGTGGGTTTA+TGG - chr1_1:4529200-4529219 Msa0002580:CDS 45.0%
! CAAAGAGGGAAGTGTAGTGG+GGG - chr1_1:4525938-4525957 Msa0002580:three_prime_UTR 50.0%
! AAAGAGGGAAGTGTAGTGGG+GGG - chr1_1:4525939-4525958 Msa0002580:three_prime_UTR 50.0%
TATCAAGTGATGCGCTCAGG+AGG - chr1_1:4525968-4525987 Msa0002580:exon 50.0%
!! CTTGTGTTGGCTAGAAGGAG+AGG - chr1_1:4526046-4526065 Msa0002580:CDS 50.0%
TAGAAGGAGAGGTCATCCAC+AGG - chr1_1:4526057-4526076 Msa0002580:CDS 50.0%
ACATGTAGAGGAGTGACCTG+TGG + chr1_1:4526076-4526095 None:intergenic 50.0%
TTGCTGCTGCTGCTGTTCTA+TGG + chr1_1:4526338-4526357 None:intergenic 50.0%
GAGTTGACGAGTACATCAGG+TGG - chr1_1:4526700-4526719 Msa0002580:CDS 50.0%
! ACGAGTACATCAGGTGGACT+TGG - chr1_1:4526706-4526725 Msa0002580:CDS 50.0%
GCTTGACCCTTCATTCTTCC+AGG - chr1_1:4526728-4526747 Msa0002580:CDS 50.0%
GCTCAATTTCTCAGACCTGC+AGG - chr1_1:4527509-4527528 Msa0002580:intron 50.0%
CCATGAGACTGAAGCCAGAA+AGG + chr1_1:4527551-4527570 None:intergenic 50.0%
!! CCTTTCTGGCTTCAGTCTCA+TGG - chr1_1:4527548-4527567 Msa0002580:intron 50.0%
TGCTGCATGATTGTTGGCGA+CGG + chr1_1:4527955-4527974 None:intergenic 50.0%
! GTTAACTTGGGAGGGAAGGA+AGG - chr1_1:4529138-4529157 Msa0002580:CDS 50.0%
TGAAGCAGCCTCTGCTGTGA+GGG + chr1_1:4526011-4526030 None:intergenic 55.0%
GATTGTTGGCGACGGAATCG+AGG + chr1_1:4527947-4527966 None:intergenic 55.0%
CTGAAGCAGCCTCTGCTGTG+AGG + chr1_1:4526012-4526031 None:intergenic 60.0%
GCAGCAGACCCTCACAGCAG+AGG - chr1_1:4526000-4526019 Msa0002580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4525823 4529417 4525823 ID=Msa0002580;Name=Msa0002580
chr1_1 mRNA 4525823 4529417 4525823 ID=Msa0002580-mRNA-1;Parent=Msa0002580;Name=Msa0002580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|3|148|822
chr1_1 exon 4525823 4527452 4525823 ID=Msa0002580-mRNA-1:exon:1420;Parent=Msa0002580-mRNA-1
chr1_1 exon 4527651 4527864 4527651 ID=Msa0002580-mRNA-1:exon:1419;Parent=Msa0002580-mRNA-1
chr1_1 exon 4528491 4529417 4528491 ID=Msa0002580-mRNA-1:exon:1418;Parent=Msa0002580-mRNA-1
chr1_1 five_prime_UTR 4529264 4529417 4529264 ID=Msa0002580-mRNA-1:five_prime_utr;Parent=Msa0002580-mRNA-1
chr1_1 CDS 4528491 4529263 4528491 ID=Msa0002580-mRNA-1:cds;Parent=Msa0002580-mRNA-1
chr1_1 CDS 4527651 4527864 4527651 ID=Msa0002580-mRNA-1:cds;Parent=Msa0002580-mRNA-1
chr1_1 CDS 4525971 4527452 4525971 ID=Msa0002580-mRNA-1:cds;Parent=Msa0002580-mRNA-1
chr1_1 three_prime_UTR 4525823 4525970 4525823 ID=Msa0002580-mRNA-1:three_prime_utr;Parent=Msa0002580-mRNA-1
Gene Sequence

>Msa0002580

ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGTCATCCACAGGTCACTCCTCTACATGTAGCCATCACTTTACTTACCTTAAGACTAAGTTCCTTCAAAAGGGCTTGTCTTAAGTCTCATCAACCACACCATCAAACTTCACAACATCCACTTCAATCTAGAGCTCTTGAGCTTTGTTTCAATGTAGCTCTTAATAGGTTACCAACAACACCTTCTCCTTTGATTCACTCTCAGCCTTCACTTTCCAATGCTCTCATTGCTGCATTGAAAAGAGCACAAGCTCATCAAAGAAGAGGTTCCATAGAACAGCAGCAGCAGCAACAGCAAACAGTTCTTACTGTGAAAGTTGAACTTGAACAGCTTATTATATCTATACTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGATTCTCTAGTACTCTTGTTAAGAACAATTTAGAAGACTCTTTCTCACCTTCTAATTCTGTTTTTAAATGTTATAATAGTTCTGGTGGTGGTGTGTTTTCATCTCCATGTTCACCTTCAACTAGTGAGAATCACAGAGAAAACATCAACCTTAGCAGTTTCAGACAGAACAATTTCATGGCTGCTACTAGTGCTAAGCACAGTTCTTGTGAGTTTAACTCAGTTCTCTTTTCTCCACCAAAAAGAACTGAGTTGACGAGTACATCAGGTGGACTTGGCTTGACCCTTCATTCTTCCAGTGTCCTTGATTCCAAGATGAGCATCTCTCAGAACCTATCTCATATGCTGGAAACAAAGCCCTTTAGCAGTAATAAGGTGCATGAGGATAAACTTAATTGTTGTGAAGAATGTGCTTCCAATTATGAAAAAGAAGCTCAATTTCTCAGACCTGCAGGACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACAAAATAAGGATGCATTAACCGAGTTGAAAAGAAAATGGAATAGACTATGCCACTGTCTACACCAAAACAAACAGCACCAAAATCACTGGAATAGGGGCAACAACAATCATAGTTCAAACCTCAATAATTCATCAAGCATCATATCTCACGCCTCCAATCTTACACCTCGATTCCGTCGCCAACAATCATGCAGCACCATTGAGTTTAATTTCAATGATAAAAGGGAAACAACAAAGCCAGTCTTTGATTCCATTGCAAGCATAGAAGGTAAAGAAGTAAAGATTAGTCTTGCACTTGGCAATGATGATTCAAGTGAAAAGGTGGGAAATATAACTGATACAACACTACAACAAGCTCATGTTTGTAAACTATTGCAAGAGAATGTGCCATGGCAATCTGAAACTATTCCTTCAATATCAAAAGCCTTGTTTGATACCAAATCAACAAAACAAAATGAAATTTCATTTACATGGTTATTTTTACAAGGCAATGATTTCATAAGCAAGAGAAGATTAGCACTTGCTATTGCAGAATCAGTTTTTGGTTCAGCTGATTTGGTCCTTCAATTGGATATGCTAAAAAAGGAAACTTTAATAGCCCCATTTTCTGAAATGCTATTAGGAGCATTGAGAAAACATCAACAGCTTGTGGTTTTGATTGAAAATGTTGATTCTGCTGATACCCAATTCATGAAATTTCTCTCAGATGGATATGAAAAAGGAAAGTTTGAAACTTTAAGTAACAAAGAGGGGAATTTAGGTCAAGTAATATTCATCTTAACAAAAGGTGGATCCACAAGCATTGAAGAGAAGAACAAAAAAACTGTTATCAATTTGTTGTGGCAAATCAGTGAAACTAAGCCTAATTTCTTGAGCCCCAAGAGAAAAGCTGAATTTGATTTGTTTTCCAAAACCAAGAACCCTAGAATTGAAGAGAATGAAAAGGGGTTGTTGATTTCTGAAAAAGGAAGCAAAAAGGAAGAATTTTTAAGACAATCAAGCTTTAACAGTAACACCCTTGATCTGAACATGAAAGCTGATGAAGAGGAAGATGGTGAAGATAAAGCAATTGAAAGTAGCTCAATTTCAAGTGATAATCCATTGAATTCAAATGTGTTTCTTGATTCAATTGAGAACAAGTTTGAGTTTAACACAAGTTCAGATAAAGACAGGAAAAAGACAGAGTTTTTTCTGTTTAAGATTAAAGGGTCATTTGAAGATGTTTGTGGTAAGAAAAATGTGGTGAATTTTAGTGTAGATGAAAAGGTGATTGAAGACATGTGTGTGGGGTGTTGTTTTTTTACTAACAAAATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTAGAAACAGTTAACTTGGGAGGGAAGGAAGGTATACATTTTAGACTTTGTTTGGGTGATAATAGAAATTGGGATTGGGATAGTGGGTTTATGGATTCTTCTCTGCCTAAGAGTATCCAAGTTAATTACTTCATAGAATGA

Protein sequence

>Msa0002580

MRSGGCALQQTLTAEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKRACLKSHQPHHQTSQHPLQSRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGSIEQQQQQQQTVLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSFSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRENINLSSFRQNNFMAATSAKHSSCEFNSVLFSPPKRTELTSTSGGLGLTLHSSSVLDSKMSISQNLSHMLETKPFSSNKVHEDKLNCCEECASNYEKEAQFLRPAGQKKTLPFWLQSHGTEEQNKDALTELKRKWNRLCHCLHQNKQHQNHWNRGNNNHSSNLNNSSSIISHASNLTPRFRRQQSCSTIEFNFNDKRETTKPVFDSIASIEGKEVKISLALGNDDSSEKVGNITDTTLQQAHVCKLLQENVPWQSETIPSISKALFDTKSTKQNEISFTWLFLQGNDFISKRRLALAIAESVFGSADLVLQLDMLKKETLIAPFSEMLLGALRKHQQLVVLIENVDSADTQFMKFLSDGYEKGKFETLSNKEGNLGQVIFILTKGGSTSIEEKNKKTVINLLWQISETKPNFLSPKRKAEFDLFSKTKNPRIEENEKGLLISEKGSKKEEFLRQSSFNSNTLDLNMKADEEEDGEDKAIESSSISSDNPLNSNVFLDSIENKFEFNTSSDKDRKKTEFFLFKIKGSFEDVCGKKNVVNFSVDEKVIEDMCVGCCFFTNKMFEKWLKDIFQSSLETVNLGGKEGIHFRLCLGDNRNWDWDSGFMDSSLPKSIQVNYFIE*