Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664250 | XP_012573096.1 | 87.671 | 219 | 27 | 0 | 1 | 219 | 128 | 346 | 8.39e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664250 | sp|Q9FLD7|GT14A_ARATH | 38.967 | 213 | 119 | 2 | 4 | 215 | 245 | 447 | 6.79e-51 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664250 | A0A1S3EDR9 | 87.671 | 219 | 27 | 0 | 1 | 219 | 128 | 346 | 4.01e-142 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0664250 | Msa1121490 | 0.808437 | 3.098306e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664250 | MtrunA17_Chr4g0002191 | 89.954 | 219 | 13 | 1 | 1 | 219 | 202 | 411 | 1.43e-143 | 406 |
| Msa0664250 | MtrunA17_Chr4g0010141 | 41.315 | 213 | 114 | 2 | 4 | 215 | 217 | 419 | 6.71e-55 | 180 |
| Msa0664250 | MtrunA17_Chr1g0208381 | 41.589 | 214 | 113 | 4 | 4 | 215 | 194 | 397 | 5.14e-53 | 175 |
| Msa0664250 | MtrunA17_Chr4g0063621 | 37.264 | 212 | 122 | 2 | 4 | 214 | 187 | 388 | 7.92e-51 | 169 |
| Msa0664250 | MtrunA17_Chr1g0169461 | 35.514 | 214 | 126 | 1 | 1 | 214 | 237 | 438 | 7.00e-49 | 165 |
| Msa0664250 | MtrunA17_Chr4g0022501 | 39.151 | 212 | 116 | 4 | 4 | 214 | 233 | 432 | 1.87e-48 | 164 |
| Msa0664250 | MtrunA17_Chr6g0452631 | 38.208 | 212 | 120 | 2 | 4 | 214 | 231 | 432 | 6.58e-48 | 162 |
| Msa0664250 | MtrunA17_Chr6g0460801 | 38.028 | 213 | 124 | 2 | 4 | 215 | 199 | 404 | 4.70e-47 | 159 |
| Msa0664250 | MtrunA17_Chr7g0254121 | 36.150 | 213 | 125 | 3 | 4 | 215 | 197 | 399 | 5.11e-45 | 154 |
| Msa0664250 | MtrunA17_Chr2g0317441 | 33.803 | 213 | 125 | 2 | 4 | 215 | 227 | 424 | 2.09e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664250 | AT1G71070.1 | 40.278 | 216 | 118 | 2 | 1 | 215 | 190 | 395 | 4.37e-53 | 175 |
| Msa0664250 | AT5G39990.1 | 38.967 | 213 | 119 | 2 | 4 | 215 | 245 | 447 | 6.90e-52 | 174 |
| Msa0664250 | AT1G03520.2 | 38.208 | 212 | 118 | 4 | 4 | 214 | 158 | 357 | 5.38e-48 | 161 |
| Msa0664250 | AT1G03520.1 | 38.208 | 212 | 118 | 4 | 4 | 214 | 247 | 446 | 4.45e-47 | 161 |
| Msa0664250 | AT4G27480.2 | 36.150 | 213 | 120 | 2 | 4 | 215 | 224 | 421 | 1.56e-46 | 159 |
| Msa0664250 | AT4G27480.3 | 36.150 | 213 | 120 | 2 | 4 | 215 | 224 | 421 | 1.56e-46 | 159 |
| Msa0664250 | AT4G27480.1 | 36.150 | 213 | 120 | 2 | 4 | 215 | 224 | 421 | 1.56e-46 | 159 |
| Msa0664250 | AT5G15050.1 | 35.681 | 213 | 126 | 2 | 4 | 215 | 232 | 434 | 3.94e-46 | 158 |
| Msa0664250 | AT4G03340.2 | 37.264 | 212 | 120 | 4 | 4 | 214 | 225 | 424 | 7.07e-45 | 155 |
| Msa0664250 | AT4G03340.1 | 37.264 | 212 | 120 | 4 | 4 | 214 | 248 | 447 | 1.14e-44 | 154 |
| Msa0664250 | AT3G24040.1 | 36.279 | 215 | 126 | 3 | 1 | 214 | 210 | 414 | 1.14e-42 | 149 |
| Msa0664250 | AT3G15350.2 | 36.279 | 215 | 119 | 3 | 4 | 215 | 225 | 424 | 4.01e-42 | 147 |
| Msa0664250 | AT3G15350.1 | 36.279 | 215 | 119 | 3 | 4 | 215 | 225 | 424 | 4.01e-42 | 147 |
| Msa0664250 | AT2G37585.1 | 35.849 | 212 | 108 | 2 | 4 | 215 | 201 | 384 | 3.80e-40 | 141 |
| Msa0664250 | AT1G53100.1 | 31.925 | 213 | 126 | 4 | 4 | 214 | 227 | 422 | 2.32e-36 | 132 |
| Msa0664250 | AT1G53100.2 | 31.707 | 205 | 121 | 4 | 4 | 206 | 227 | 414 | 9.20e-34 | 125 |
| Msa0664250 | AT3G03690.1 | 40.278 | 144 | 85 | 1 | 4 | 146 | 197 | 340 | 2.24e-33 | 123 |
Find 33 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTAATAGAACTTTAAA+TGG | 0.201353 | 4_4:-3301234 | Msa0664250:CDS |
| TCTAGAGAAAATTGATGATT+TGG | 0.283786 | 4_4:-3301256 | Msa0664250:CDS |
| GAAAGTGTATGTTTAGTATA+TGG | 0.357907 | 4_4:-3301138 | Msa0664250:CDS |
| CGAAATATCTTAAAAGCATC+AGG | 0.395787 | 4_4:+3303738 | None:intergenic |
| TTAAGTGAAATTGTTAATAG+TGG | 0.398428 | 4_4:-3301063 | Msa0664250:CDS |
| GTTGTAAAGCCAGGATTGTT+TGG | 0.420135 | 4_4:-3301105 | Msa0664250:CDS |
| TTCACTTTACTTTGCTGTTG+AGG | 0.427499 | 4_4:-3303772 | Msa0664250:CDS |
| TATGATACAATGATGGAAAC+TGG | 0.434308 | 4_4:-3301318 | Msa0664250:CDS |
| ATTATTTAATAGGTTCTCCT+TGG | 0.437153 | 4_4:-3301566 | Msa0664250:intron |
| TTTATGGAGTATTGTGTGAA+TGG | 0.438026 | 4_4:-3301525 | Msa0664250:CDS |
| CAGTAATGTAGCTTATCCTA+TGG | 0.453414 | 4_4:-3301466 | Msa0664250:CDS |
| GCTGCATTTGCACGTCCATT+TGG | 0.453621 | 4_4:-3301294 | Msa0664250:CDS |
| TGAAATCTTGGGAGTTACAT+AGG | 0.456676 | 4_4:+3301424 | None:intergenic |
| AACATTGATGTTGTAAAGCC+AGG | 0.461968 | 4_4:-3301114 | Msa0664250:CDS |
| ACTTTAAATGGATTTGTTCA+AGG | 0.466698 | 4_4:-3301222 | Msa0664250:CDS |
| ATGGATTTGTTCAAGGTGAA+TGG | 0.479874 | 4_4:-3301215 | Msa0664250:CDS |
| ACAAGATCACCTTCACCAAA+TGG | 0.480206 | 4_4:+3301279 | None:intergenic |
| AAAAGCATCAGGAGTATCTC+TGG | 0.483957 | 4_4:+3303749 | None:intergenic |
| AGTTTGATGCCAAACAATCC+TGG | 0.484819 | 4_4:+3301096 | None:intergenic |
| TGGAGTATTGTGTGAATGGA+TGG | 0.505200 | 4_4:-3301521 | Msa0664250:CDS |
| TAAGTGAAATTGTTAATAGT+GGG | 0.516005 | 4_4:-3301062 | Msa0664250:CDS |
| ACGAAACATGAATCAAATAG+TGG | 0.530778 | 4_4:-3303826 | None:intergenic |
| ACACTAATTGCAATTGACAT+TGG | 0.535605 | 4_4:+3301025 | None:intergenic |
| GTCACACTATGATACAATGA+TGG | 0.547246 | 4_4:-3301325 | Msa0664250:CDS |
| TCAAGTAATTGAGATTCTGA+TGG | 0.565400 | 4_4:+3301351 | None:intergenic |
| TACAAAGGTTATAGAAGATG+AGG | 0.566651 | 4_4:-3301160 | Msa0664250:CDS |
| AGAGATAAATAAAACTACAA+AGG | 0.603372 | 4_4:-3301175 | Msa0664250:CDS |
| GTGTGGAAATAAGTTTCCAT+AGG | 0.603863 | 4_4:+3301450 | None:intergenic |
| TTTGCACGTCCATTTGGTGA+AGG | 0.610741 | 4_4:-3301288 | Msa0664250:CDS |
| GATCTTGTAAGAATCATCCA+AGG | 0.638587 | 4_4:+3301549 | None:intergenic |
| GGAGTATTGTGTGAATGGAT+GGG | 0.648311 | 4_4:-3301520 | Msa0664250:CDS |
| AATTAGATTATTGTCCACTG+TGG | 0.680300 | 4_4:+3301395 | None:intergenic |
| GGGAGTTACATAGGACTGTG+TGG | 0.702417 | 4_4:+3301433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAATTATTTAAT+AGG | - | chr4_4:3303266-3303285 | Msa0664250:intron | 0.0% |
| !! | TAATATATCTTATATCTAAT+TGG | + | chr4_4:3301155-3301174 | None:intergenic | 10.0% |
| !!! | GTTACAAATTTATCTTTTTA+AGG | - | chr4_4:3302613-3302632 | Msa0664250:intron | 15.0% |
| !!! | AGTTTTAAGAAATAAAACTA+TGG | - | chr4_4:3303105-3303124 | Msa0664250:intron | 15.0% |
| !!! | GATTTTTACAAAATCTTTTA+AGG | - | chr4_4:3303161-3303180 | Msa0664250:intron | 15.0% |
| !! | TTAACAACTATAAATTGATA+TGG | + | chr4_4:3303222-3303241 | None:intergenic | 15.0% |
| !!! | AACTTTTACCAAAATTATGA+TGG | + | chr4_4:3301268-3301287 | None:intergenic | 20.0% |
| !!! | ATGAATATCTATTTTCTAGA+AGG | - | chr4_4:3301865-3301884 | Msa0664250:intron | 20.0% |
| !! | TGAATCTTATCTTTACTTAA+AGG | - | chr4_4:3302386-3302405 | Msa0664250:intron | 20.0% |
| !!! | GTTTTTTCTTTACAACATAT+AGG | - | chr4_4:3302504-3302523 | Msa0664250:intron | 20.0% |
| !! | GACATTGAATAATATATGTA+TGG | + | chr4_4:3302670-3302689 | None:intergenic | 20.0% |
| !! | TTTGAGAAAATCACATAATT+CGG | - | chr4_4:3302977-3302996 | Msa0664250:intron | 20.0% |
| !! | AGAGATAAATAAAACTACAA+AGG | - | chr4_4:3303667-3303686 | Msa0664250:intron | 20.0% |
| !! | TTAAGTGAAATTGTTAATAG+TGG | - | chr4_4:3303779-3303798 | Msa0664250:CDS | 20.0% |
| !! | TAAGTGAAATTGTTAATAGT+GGG | - | chr4_4:3303780-3303799 | Msa0664250:CDS | 20.0% |
| !! | TCTTTTCTTCATGTAAACTT+GGG | + | chr4_4:3301046-3301065 | None:intergenic | 25.0% |
| !!! | TTTTTAGTGTGTGTTTGAAT+TGG | - | chr4_4:3301216-3301235 | Msa0664250:CDS | 25.0% |
| !! | ATGATCAACCATCATAATTT+TGG | - | chr4_4:3301257-3301276 | Msa0664250:CDS | 25.0% |
| ! | TCATCTTAATATATCAGACT+TGG | - | chr4_4:3301571-3301590 | Msa0664250:intron | 25.0% |
| ! | TTTAGTAGTCAAATTCACTT+TGG | - | chr4_4:3301639-3301658 | Msa0664250:intron | 25.0% |
| ! | AGGATATAGATATATCCATT+AGG | - | chr4_4:3301885-3301904 | Msa0664250:intron | 25.0% |
| ! | GGATATAGATATATCCATTA+GGG | - | chr4_4:3301886-3301905 | Msa0664250:intron | 25.0% |
| ! | TTCTAATTGCAATCATCAAA+AGG | - | chr4_4:3302187-3302206 | Msa0664250:intron | 25.0% |
| ! | GTAAAGATAAGATTCAATTG+AGG | + | chr4_4:3302382-3302401 | None:intergenic | 25.0% |
| ! | CTTTGTGAACTTAGTTAAAT+TGG | + | chr4_4:3302697-3302716 | None:intergenic | 25.0% |
| !!! | TTTGGATATTCTAAAATGAG+GGG | + | chr4_4:3302782-3302801 | None:intergenic | 25.0% |
| !!! | GTTTGGATATTCTAAAATGA+GGG | + | chr4_4:3302783-3302802 | None:intergenic | 25.0% |
| !!! | TGTTTGGATATTCTAAAATG+AGG | + | chr4_4:3302784-3302803 | None:intergenic | 25.0% |
| ! | ATAAAAGTTAAGGTTCTGTT+TGG | + | chr4_4:3302800-3302819 | None:intergenic | 25.0% |
| ! | CCAAAGGATAATAAAAGTTA+AGG | + | chr4_4:3302810-3302829 | None:intergenic | 25.0% |
| !! | CCTTAACTTTTATTATCCTT+TGG | - | chr4_4:3302807-3302826 | Msa0664250:intron | 25.0% |
| ! | TCTCAAATTATTAGTAGTGT+CGG | + | chr4_4:3302964-3302983 | None:intergenic | 25.0% |
| !! | GATTTTGTAAAAATCATCCA+AGG | + | chr4_4:3303156-3303175 | None:intergenic | 25.0% |
| ! | ATTATTTAATAGGTTCTCCT+TGG | - | chr4_4:3303276-3303295 | Msa0664250:intron | 25.0% |
| !! | GATTCTTACAAGATCTTTTA+TGG | - | chr4_4:3303301-3303320 | Msa0664250:intron | 25.0% |
| ! | AAAAACATTAGTAGCTTTCT+TGG | + | chr4_4:3303356-3303375 | None:intergenic | 25.0% |
| !! | TCTAGAGAAAATTGATGATT+TGG | - | chr4_4:3303586-3303605 | Msa0664250:intron | 25.0% |
| ! | GCTCTTAATAGAACTTTAAA+TGG | - | chr4_4:3303608-3303627 | Msa0664250:intron | 25.0% |
| !! | ACTTTAAATGGATTTGTTCA+AGG | - | chr4_4:3303620-3303639 | Msa0664250:intron | 25.0% |
| !! | GAAAGTGTATGTTTAGTATA+TGG | - | chr4_4:3303704-3303723 | Msa0664250:intron | 25.0% |
| ! | CTCTTTTCTTCATGTAAACT+TGG | + | chr4_4:3301047-3301066 | None:intergenic | 30.0% |
| !! | CGAAATATCTTAAAAGCATC+AGG | + | chr4_4:3301107-3301126 | None:intergenic | 30.0% |
| !!! | GATGCTTTTAAGATATTTCG+AGG | - | chr4_4:3301107-3301126 | Msa0664250:CDS | 30.0% |
| GATTTAAAAAGTGAAGCGAA+CGG | + | chr4_4:3301475-3301494 | None:intergenic | 30.0% | |
| !!! | GTTCGCTTCACTTTTTAAAT+CGG | - | chr4_4:3301474-3301493 | Msa0664250:CDS | 30.0% |
| CAATCAAACTCCTTATCATT+TGG | + | chr4_4:3301803-3301822 | None:intergenic | 30.0% | |
| TTTGATTGTTGTGGAACATT+AGG | - | chr4_4:3301815-3301834 | Msa0664250:intron | 30.0% | |
| !! | TCAATGGTTAGTTTGTAAGA+TGG | - | chr4_4:3301913-3301932 | Msa0664250:intron | 30.0% |
| ! | TAAGAGATGATAGTGAAGTT+TGG | - | chr4_4:3302020-3302039 | Msa0664250:intron | 30.0% |
| GATAGTGAAGTTTGGTTATA+TGG | - | chr4_4:3302028-3302047 | Msa0664250:intron | 30.0% | |
| ! | TTTTCTTCTTCTCAATCATG+TGG | - | chr4_4:3302055-3302074 | Msa0664250:intron | 30.0% |
| ATCGTACTCTAATATTGCTT+TGG | - | chr4_4:3302157-3302176 | Msa0664250:intron | 30.0% | |
| CTTTACTTTCTTCCTTCATT+AGG | - | chr4_4:3302228-3302247 | Msa0664250:intron | 30.0% | |
| ! | TGAAATTAGCTTCCTAATGA+AGG | + | chr4_4:3302243-3302262 | None:intergenic | 30.0% |
| TTTAACCATACATTGAGAGA+AGG | - | chr4_4:3302281-3302300 | Msa0664250:intron | 30.0% | |
| AATTTCCTTCTCTCAATGTA+TGG | + | chr4_4:3302289-3302308 | None:intergenic | 30.0% | |
| !! | AAATTGACGTGTTGATTGAT+TGG | - | chr4_4:3302304-3302323 | Msa0664250:intron | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+TGG | - | chr4_4:3302591-3302610 | Msa0664250:intron | 30.0% |
| TGTGAACTTAGTTAAATTGG+CGG | + | chr4_4:3302694-3302713 | None:intergenic | 30.0% | |
| !! | TTGGATATTCTAAAATGAGG+GGG | + | chr4_4:3302781-3302800 | None:intergenic | 30.0% |
| ! | GGATACACTCAAATTACTTT+TGG | + | chr4_4:3302885-3302904 | None:intergenic | 30.0% |
| ! | TGCATTGATATATATGACCT+TGG | - | chr4_4:3303136-3303155 | Msa0664250:intron | 30.0% |
| !! | TTTATGGAGTATTGTGTGAA+TGG | - | chr4_4:3303317-3303336 | Msa0664250:intron | 30.0% |
| !!! | TGTGGTGTTTTTGAAATCTT+GGG | + | chr4_4:3303432-3303451 | None:intergenic | 30.0% |
| AATTAGATTATTGTCCACTG+TGG | + | chr4_4:3303450-3303469 | None:intergenic | 30.0% | |
| TCAAGTAATTGAGATTCTGA+TGG | + | chr4_4:3303494-3303513 | None:intergenic | 30.0% | |
| ! | TATGATACAATGATGGAAAC+TGG | - | chr4_4:3303524-3303543 | Msa0664250:intron | 30.0% |
| TACAAAGGTTATAGAAGATG+AGG | - | chr4_4:3303682-3303701 | Msa0664250:intron | 30.0% | |
| ACACTAATTGCAATTGACAT+TGG | + | chr4_4:3303820-3303839 | None:intergenic | 30.0% | |
| !! | TTCACTTTACTTTGCTGTTG+AGG | - | chr4_4:3301070-3301089 | Msa0664250:CDS | 35.0% |
| TTAGTGTGTGTTTGAATTGG+TGG | - | chr4_4:3301219-3301238 | Msa0664250:CDS | 35.0% | |
| !! | GTTTGAATTGGTGGTGAAAT+TGG | - | chr4_4:3301228-3301247 | Msa0664250:CDS | 35.0% |
| ACTCTCAATCCAAACATATC+CGG | - | chr4_4:3301332-3301351 | Msa0664250:CDS | 35.0% | |
| AGAATGCAAAGTTCTCTTGA+CGG | + | chr4_4:3301605-3301624 | None:intergenic | 35.0% | |
| CTAACAAAGCATGTTAGCTA+TGG | - | chr4_4:3301776-3301795 | Msa0664250:intron | 35.0% | |
| TAGCTATGGTCCAAATGATA+AGG | - | chr4_4:3301790-3301809 | Msa0664250:intron | 35.0% | |
| GATAAGGAGTTTGATTGTTG+TGG | - | chr4_4:3301806-3301825 | Msa0664250:intron | 35.0% | |
| TATCCATTAGGGTGAATCAA+TGG | - | chr4_4:3301897-3301916 | Msa0664250:intron | 35.0% | |
| !! | TAACCATTGATTCACCCTAA+TGG | + | chr4_4:3301903-3301922 | None:intergenic | 35.0% |
| ! | AGGTTGTATCGATGTAAGTT+TGG | - | chr4_4:3301950-3301969 | Msa0664250:intron | 35.0% |
| ! | TGTATCGATGTAAGTTTGGA+CGG | - | chr4_4:3301954-3301973 | Msa0664250:intron | 35.0% |
| AGTAGAACCCTCAACTATTT+AGG | - | chr4_4:3302096-3302115 | Msa0664250:intron | 35.0% | |
| GTAGAACCCTCAACTATTTA+GGG | - | chr4_4:3302097-3302116 | Msa0664250:intron | 35.0% | |
| AGACATATAACCAAGATCTC+AGG | + | chr4_4:3302137-3302156 | None:intergenic | 35.0% | |
| GAAGAAAGTAAAGTAGCACT+GGG | + | chr4_4:3302221-3302240 | None:intergenic | 35.0% | |
| GGTTAAAATTCACCATCCAA+GGG | + | chr4_4:3302268-3302287 | None:intergenic | 35.0% | |
| TGGTTAAAATTCACCATCCA+AGG | + | chr4_4:3302269-3302288 | None:intergenic | 35.0% | |
| TGGTGTATATACTTCCGTAA+GGG | + | chr4_4:3302865-3302884 | None:intergenic | 35.0% | |
| TTGGTGTATATACTTCCGTA+AGG | + | chr4_4:3302866-3302885 | None:intergenic | 35.0% | |
| ! | TTCGGTGTAGTTATATGTGT+CGG | - | chr4_4:3302995-3303014 | Msa0664250:intron | 35.0% |
| TAACCAATACCTGTGAAGAA+TGG | + | chr4_4:3303073-3303092 | None:intergenic | 35.0% | |
| GATCTTGTAAGAATCATCCA+AGG | + | chr4_4:3303296-3303315 | None:intergenic | 35.0% | |
| CAGTAATGTAGCTTATCCTA+TGG | - | chr4_4:3303376-3303395 | Msa0664250:intron | 35.0% | |
| GTGTGGAAATAAGTTTCCAT+AGG | + | chr4_4:3303395-3303414 | None:intergenic | 35.0% | |
| TGAAATCTTGGGAGTTACAT+AGG | + | chr4_4:3303421-3303440 | None:intergenic | 35.0% | |
| !!! | CTGTGGTGTTTTTGAAATCT+TGG | + | chr4_4:3303433-3303452 | None:intergenic | 35.0% |
| AGATTTCAAAAACACCACAG+TGG | - | chr4_4:3303433-3303452 | Msa0664250:intron | 35.0% | |
| GTCACACTATGATACAATGA+TGG | - | chr4_4:3303517-3303536 | Msa0664250:intron | 35.0% | |
| ! | ATGGATTTGTTCAAGGTGAA+TGG | - | chr4_4:3303627-3303646 | Msa0664250:intron | 35.0% |
| AACATTGATGTTGTAAAGCC+AGG | - | chr4_4:3303728-3303747 | Msa0664250:intron | 35.0% | |
| !! | AAAAGCATCAGGAGTATCTC+TGG | + | chr4_4:3301096-3301115 | None:intergenic | 40.0% |
| CATAAGTGACCGGATATGTT+TGG | + | chr4_4:3301344-3301363 | None:intergenic | 40.0% | |
| CAAACATATCCGGTCACTTA+TGG | - | chr4_4:3301342-3301361 | Msa0664250:CDS | 40.0% | |
| TTTAACGCACCATAAGTGAC+CGG | + | chr4_4:3301354-3301373 | None:intergenic | 40.0% | |
| TGCTCTTTAGACACCTAGAA+AGG | - | chr4_4:3301431-3301450 | Msa0664250:CDS | 40.0% | |
| AGACACCTAGAAAGGTTGAA+CGG | - | chr4_4:3301439-3301458 | Msa0664250:CDS | 40.0% | |
| GTCTAACGACAGTTAATGCT+CGG | - | chr4_4:3301516-3301535 | Msa0664250:CDS | 40.0% | |
| GGTTTATGTGTGCAATTGCT+AGG | - | chr4_4:3301541-3301560 | Msa0664250:CDS | 40.0% | |
| GGTTCTTCCTTCGATAATCT+AGG | - | chr4_4:3301975-3301994 | Msa0664250:intron | 40.0% | |
| !! | TATTTAGGGCGGCATTCTTT+TGG | - | chr4_4:3302111-3302130 | Msa0664250:intron | 40.0% |
| ! | ATTCTTTTGGCCTGAGATCT+TGG | - | chr4_4:3302124-3302143 | Msa0664250:intron | 40.0% |
| ! | AAAGTAAAGTAGCACTGGGA+TGG | + | chr4_4:3302217-3302236 | None:intergenic | 40.0% |
| GGAAGAAAGTAAAGTAGCAC+TGG | + | chr4_4:3302222-3302241 | None:intergenic | 40.0% | |
| !! | TCTTTACTTAAAGGCGTCTC+CGG | - | chr4_4:3302395-3302414 | Msa0664250:intron | 40.0% |
| AAGCTCGTTGTAGTAAACTC+CGG | + | chr4_4:3302417-3302436 | None:intergenic | 40.0% | |
| TGAGAGGAAATCGAATGGAA+GGG | + | chr4_4:3302746-3302765 | None:intergenic | 40.0% | |
| ATGAGAGGAAATCGAATGGA+AGG | + | chr4_4:3302747-3302766 | None:intergenic | 40.0% | |
| TGGAATGAGAGGAAATCGAA+TGG | + | chr4_4:3302751-3302770 | None:intergenic | 40.0% | |
| ! | CACGAGATTTTTGTCCCTTA+CGG | - | chr4_4:3302848-3302867 | Msa0664250:intron | 40.0% |
| TGTCCATTCTTCACAGGTAT+TGG | - | chr4_4:3303067-3303086 | Msa0664250:intron | 40.0% | |
| !! | TGGAGTATTGTGTGAATGGA+TGG | - | chr4_4:3303321-3303340 | Msa0664250:intron | 40.0% |
| !! | GGAGTATTGTGTGAATGGAT+GGG | - | chr4_4:3303322-3303341 | Msa0664250:intron | 40.0% |
| ACAAGATCACCTTCACCAAA+TGG | + | chr4_4:3303566-3303585 | None:intergenic | 40.0% | |
| GTTGTAAAGCCAGGATTGTT+TGG | - | chr4_4:3303737-3303756 | Msa0664250:CDS | 40.0% | |
| AGTTTGATGCCAAACAATCC+TGG | + | chr4_4:3303749-3303768 | None:intergenic | 40.0% | |
| AACCACCGTTCAACCTTTCT+AGG | + | chr4_4:3301447-3301466 | None:intergenic | 45.0% | |
| AACGACAGTTAATGCTCGGT+AGG | - | chr4_4:3301520-3301539 | Msa0664250:CDS | 45.0% | |
| AGATGGTACCTTGTTCGTGA+AGG | - | chr4_4:3301930-3301949 | Msa0664250:intron | 45.0% | |
| CGATACAACCTTCACGAACA+AGG | + | chr4_4:3301941-3301960 | None:intergenic | 45.0% | |
| CCTTCGATAATCTAGGAACG+CGG | - | chr4_4:3301982-3302001 | Msa0664250:intron | 45.0% | |
| CTTCGATAATCTAGGAACGC+GGG | - | chr4_4:3301983-3302002 | Msa0664250:intron | 45.0% | |
| GAACCCTCAACTATTTAGGG+CGG | - | chr4_4:3302100-3302119 | Msa0664250:intron | 45.0% | |
| ATGCCGCCCTAAATAGTTGA+GGG | + | chr4_4:3302106-3302125 | None:intergenic | 45.0% | |
| AATGCCGCCCTAAATAGTTG+AGG | + | chr4_4:3302107-3302126 | None:intergenic | 45.0% | |
| GGAAGCTAATTTCACTCCCT+TGG | - | chr4_4:3302249-3302268 | Msa0664250:intron | 45.0% | |
| GCTAATTTCACTCCCTTGGA+TGG | - | chr4_4:3302253-3302272 | Msa0664250:intron | 45.0% | |
| AAAATCTCGTGGAAGCTGAG+TGG | + | chr4_4:3302839-3302858 | None:intergenic | 45.0% | |
| CGTAAGGGACAAAAATCTCG+TGG | + | chr4_4:3302850-3302869 | None:intergenic | 45.0% | |
| TGAAGCTCGGATACTGTCAT+GGG | - | chr4_4:3302910-3302929 | Msa0664250:intron | 45.0% | |
| TCCTCAGAGTAGGTATGTCT+CGG | + | chr4_4:3303046-3303065 | None:intergenic | 45.0% | |
| ! | TTTGCACGTCCATTTGGTGA+AGG | - | chr4_4:3303554-3303573 | Msa0664250:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTATCATA+AGG | + | chr4_4:3302472-3302491 | None:intergenic | 5.0% |
| CACCTAGAAAGGTTGAACGG+TGG | - | chr4_4:3301442-3301461 | Msa0664250:CDS | 50.0% | |
| CCGCGTTCCTAGATTATCGA+AGG | + | chr4_4:3301985-3302004 | None:intergenic | 50.0% | |
| ! | TCTAGGAACGCGGGTTATAG+AGG | - | chr4_4:3301992-3302011 | Msa0664250:intron | 50.0% |
| TAAAATGAGGGGGAGCTGAG+TGG | + | chr4_4:3302771-3302790 | None:intergenic | 50.0% | |
| AGCTGAGTGGAATGCACCAA+AGG | + | chr4_4:3302826-3302845 | None:intergenic | 50.0% | |
| GTGTATCCGTCTGTGAAGCT+CGG | - | chr4_4:3302897-3302916 | Msa0664250:intron | 50.0% | |
| CAGTATCCGAGCTTCACAGA+CGG | + | chr4_4:3302906-3302925 | None:intergenic | 50.0% | |
| GTGAAGCTCGGATACTGTCA+TGG | - | chr4_4:3302909-3302928 | Msa0664250:intron | 50.0% | |
| TCGGATACTGTCATGGGTAC+CGG | - | chr4_4:3302916-3302935 | Msa0664250:intron | 50.0% | |
| GTCAGTGTCCATATCGTGTC+CGG | + | chr4_4:3302938-3302957 | None:intergenic | 50.0% | |
| GAGTAGGTATGTCTCGGTCT+CGG | + | chr4_4:3303040-3303059 | None:intergenic | 50.0% | |
| ACCGAGACATACCTACTCTG+AGG | - | chr4_4:3303042-3303061 | Msa0664250:intron | 50.0% | |
| GAATGGACACTCCTCAGAGT+AGG | + | chr4_4:3303056-3303075 | None:intergenic | 50.0% | |
| !! | GAGGAGTGTCCATTCTTCAC+AGG | - | chr4_4:3303061-3303080 | Msa0664250:intron | 50.0% |
| GGGAGTTACATAGGACTGTG+TGG | + | chr4_4:3303412-3303431 | None:intergenic | 50.0% | |
| GCTGCATTTGCACGTCCATT+TGG | - | chr4_4:3303548-3303567 | Msa0664250:intron | 50.0% | |
| !! | CATGGGTACCGGACACGATA+TGG | - | chr4_4:3302927-3302946 | Msa0664250:intron | 55.0% |
| GGGGAGCTGAGTGGAATGAG+AGG | + | chr4_4:3302762-3302781 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3301023 | 3303841 | 3301023 | ID=Msa0664250;Name=Msa0664250 |
| chr4_4 | mRNA | 3301023 | 3303841 | 3301023 | ID=Msa0664250-mRNA-1;Parent=Msa0664250;Name=Msa0664250-mRNA-1;_AED=0.01;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|219 |
| chr4_4 | exon | 3303736 | 3303841 | 3303736 | ID=Msa0664250-mRNA-1:exon:1043;Parent=Msa0664250-mRNA-1 |
| chr4_4 | exon | 3301023 | 3301576 | 3301023 | ID=Msa0664250-mRNA-1:exon:1042;Parent=Msa0664250-mRNA-1 |
| chr4_4 | CDS | 3303736 | 3303841 | 3303736 | ID=Msa0664250-mRNA-1:cds;Parent=Msa0664250-mRNA-1 |
| chr4_4 | CDS | 3301023 | 3301576 | 3301023 | ID=Msa0664250-mRNA-1:cds;Parent=Msa0664250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
