Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664800 | AES86511.1 | 98.759 | 564 | 7 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664800 | sp|P0C897|Y3264_ARATH | 47.048 | 525 | 237 | 8 | 9 | 528 | 9 | 497 | 2.25e-163 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664800 | G7JFQ2 | 98.759 | 564 | 7 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0664800 | Msa0868000 | 0.857102 | 2.051556e-62 | -8.615850e-47 |
| Msa0483630 | Msa0664800 | 0.861592 | 9.208479e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664800 | MtrunA17_Chr4g0002861 | 98.759 | 564 | 7 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1140 |
| Msa0664800 | MtrunA17_Chr4g0002901 | 89.964 | 558 | 54 | 2 | 1 | 557 | 1 | 557 | 0.0 | 1006 |
| Msa0664800 | MtrunA17_Chr4g0002911 | 73.656 | 558 | 143 | 4 | 1 | 557 | 1 | 555 | 0.0 | 807 |
| Msa0664800 | MtrunA17_Chr7g0220521 | 59.820 | 555 | 211 | 5 | 1 | 554 | 1 | 544 | 0.0 | 678 |
| Msa0664800 | MtrunA17_Chr2g0300311 | 31.020 | 245 | 140 | 7 | 21 | 254 | 30 | 256 | 4.72e-20 | 93.6 |
| Msa0664800 | MtrunA17_Chr2g0297831 | 31.667 | 240 | 144 | 6 | 21 | 254 | 47 | 272 | 3.80e-19 | 90.9 |
| Msa0664800 | MtrunA17_Chr5g0439641 | 28.774 | 212 | 134 | 6 | 357 | 557 | 246 | 451 | 6.28e-18 | 86.7 |
| Msa0664800 | MtrunA17_Chr5g0439641 | 27.419 | 248 | 150 | 10 | 18 | 246 | 4 | 240 | 5.74e-13 | 71.2 |
| Msa0664800 | MtrunA17_Chr5g0439661 | 32.386 | 176 | 106 | 6 | 43 | 214 | 29 | 195 | 8.07e-18 | 82.0 |
| Msa0664800 | MtrunA17_Chr7g0265891 | 29.493 | 217 | 140 | 5 | 38 | 252 | 47 | 252 | 3.89e-17 | 84.3 |
| Msa0664800 | MtrunA17_Chr7g0265891 | 26.543 | 162 | 112 | 3 | 377 | 531 | 270 | 431 | 4.00e-11 | 65.5 |
| Msa0664800 | MtrunA17_Chr5g0439721 | 33.333 | 189 | 117 | 6 | 373 | 559 | 257 | 438 | 1.64e-16 | 82.4 |
| Msa0664800 | MtrunA17_Chr5g0439721 | 26.721 | 247 | 140 | 9 | 18 | 246 | 4 | 227 | 6.92e-14 | 73.9 |
| Msa0664800 | MtrunA17_Chr5g0440401 | 29.412 | 187 | 124 | 5 | 373 | 557 | 38 | 218 | 1.95e-15 | 75.9 |
| Msa0664800 | MtrunA17_Chr5g0401791 | 30.058 | 173 | 106 | 7 | 21 | 187 | 78 | 241 | 4.53e-15 | 78.2 |
| Msa0664800 | MtrunA17_Chr2g0296801 | 29.050 | 179 | 121 | 5 | 377 | 552 | 175 | 350 | 4.75e-15 | 77.0 |
| Msa0664800 | MtrunA17_Chr6g0452601 | 26.347 | 167 | 106 | 2 | 42 | 208 | 25 | 174 | 7.18e-15 | 77.0 |
| Msa0664800 | MtrunA17_Chr6g0452601 | 26.554 | 177 | 129 | 1 | 375 | 550 | 242 | 418 | 1.83e-11 | 66.2 |
| Msa0664800 | MtrunA17_Chr8g0335061 | 32.934 | 167 | 96 | 6 | 42 | 204 | 27 | 181 | 1.75e-14 | 75.9 |
| Msa0664800 | MtrunA17_Chr8g0335061 | 25.806 | 186 | 118 | 3 | 373 | 539 | 245 | 429 | 9.69e-12 | 67.4 |
| Msa0664800 | MtrunA17_Chr7g0238251 | 24.494 | 494 | 270 | 18 | 59 | 527 | 49 | 464 | 5.74e-14 | 74.3 |
| Msa0664800 | MtrunA17_Chr5g0439681 | 28.571 | 182 | 121 | 5 | 379 | 557 | 137 | 312 | 7.59e-14 | 72.8 |
| Msa0664800 | MtrunA17_Chr6g0452161 | 26.190 | 168 | 108 | 2 | 40 | 207 | 23 | 174 | 8.21e-14 | 73.6 |
| Msa0664800 | MtrunA17_Chr6g0452561 | 29.000 | 200 | 131 | 3 | 358 | 550 | 230 | 425 | 9.17e-14 | 73.6 |
| Msa0664800 | MtrunA17_Chr6g0452561 | 25.789 | 190 | 124 | 6 | 20 | 207 | 5 | 179 | 4.72e-11 | 65.1 |
| Msa0664800 | MtrunA17_Chr6g0452551 | 25.309 | 162 | 104 | 2 | 42 | 203 | 25 | 169 | 9.75e-14 | 73.2 |
| Msa0664800 | MtrunA17_Chr8g0334951 | 32.075 | 159 | 93 | 6 | 42 | 196 | 29 | 176 | 3.64e-13 | 71.6 |
| Msa0664800 | MtrunA17_Chr8g0335011 | 30.588 | 170 | 105 | 4 | 42 | 198 | 36 | 205 | 4.09e-13 | 72.0 |
| Msa0664800 | MtrunA17_Chr8g0335011 | 30.496 | 141 | 93 | 3 | 401 | 540 | 349 | 485 | 4.13e-11 | 65.5 |
| Msa0664800 | MtrunA17_Chr6g0452531 | 24.873 | 197 | 127 | 4 | 22 | 218 | 7 | 182 | 4.60e-13 | 71.2 |
| Msa0664800 | MtrunA17_Chr6g0452531 | 28.492 | 179 | 127 | 1 | 373 | 550 | 232 | 410 | 1.87e-12 | 69.3 |
| Msa0664800 | MtrunA17_Chr6g0452501 | 24.691 | 162 | 105 | 2 | 42 | 203 | 25 | 169 | 5.23e-13 | 71.2 |
| Msa0664800 | MtrunA17_Chr6g0452501 | 28.977 | 176 | 122 | 3 | 377 | 550 | 236 | 410 | 1.82e-11 | 66.2 |
| Msa0664800 | MtrunA17_Chr7g0238511 | 27.660 | 188 | 131 | 4 | 372 | 555 | 252 | 438 | 6.81e-13 | 70.9 |
| Msa0664800 | MtrunA17_Chr6g0452611 | 25.309 | 162 | 106 | 3 | 42 | 203 | 24 | 170 | 8.08e-13 | 70.5 |
| Msa0664800 | MtrunA17_Chr8g0334971 | 26.667 | 225 | 146 | 7 | 42 | 258 | 27 | 240 | 1.27e-12 | 70.1 |
| Msa0664800 | MtrunA17_Chr8g0334971 | 30.534 | 131 | 90 | 1 | 409 | 539 | 301 | 430 | 3.65e-12 | 68.6 |
| Msa0664800 | MtrunA17_Chr7g0238051 | 28.767 | 146 | 102 | 2 | 411 | 555 | 223 | 367 | 1.32e-12 | 69.7 |
| Msa0664800 | MtrunA17_Chr6g0457371 | 26.519 | 181 | 114 | 5 | 43 | 222 | 26 | 188 | 1.34e-12 | 69.7 |
| Msa0664800 | MtrunA17_Chr7g0238231 | 29.452 | 146 | 101 | 2 | 411 | 555 | 348 | 492 | 3.29e-12 | 68.9 |
| Msa0664800 | MtrunA17_Chr3g0118601 | 29.480 | 173 | 121 | 1 | 379 | 550 | 277 | 449 | 3.31e-12 | 68.9 |
| Msa0664800 | MtrunA17_Chr7g0238131 | 28.947 | 190 | 124 | 4 | 373 | 555 | 232 | 417 | 4.22e-12 | 68.2 |
| Msa0664800 | MtrunA17_Chr7g0218171 | 28.161 | 174 | 124 | 1 | 378 | 550 | 124 | 297 | 6.19e-12 | 67.0 |
| Msa0664800 | MtrunA17_Chr8g0334911 | 31.250 | 160 | 96 | 6 | 42 | 198 | 28 | 176 | 7.06e-12 | 67.8 |
| Msa0664800 | MtrunA17_Chr8g0335071 | 29.286 | 140 | 97 | 2 | 411 | 550 | 318 | 455 | 1.47e-11 | 66.6 |
| Msa0664800 | MtrunA17_Chr7g0242071 | 31.847 | 157 | 99 | 3 | 41 | 196 | 28 | 177 | 1.67e-11 | 67.0 |
| Msa0664800 | MtrunA17_Chr8g0352491 | 27.429 | 175 | 100 | 5 | 398 | 551 | 17 | 185 | 2.31e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664800 | AT3G02645.1 | 47.048 | 525 | 237 | 8 | 9 | 528 | 9 | 497 | 2.28e-164 | 478 |
| Msa0664800 | AT3G50180.1 | 32.922 | 243 | 144 | 11 | 19 | 253 | 153 | 384 | 2.52e-27 | 116 |
| Msa0664800 | AT3G50180.1 | 31.148 | 183 | 116 | 5 | 377 | 552 | 403 | 582 | 5.30e-14 | 75.5 |
| Msa0664800 | AT3G50120.1 | 36.364 | 187 | 108 | 7 | 21 | 204 | 80 | 258 | 4.34e-25 | 109 |
| Msa0664800 | AT3G50120.1 | 29.050 | 179 | 121 | 3 | 377 | 552 | 350 | 525 | 5.38e-13 | 72.0 |
| Msa0664800 | AT3G50170.2 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 5.93e-24 | 105 |
| Msa0664800 | AT3G50170.1 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 1.62e-23 | 104 |
| Msa0664800 | AT3G50170.1 | 30.168 | 179 | 119 | 3 | 377 | 552 | 358 | 533 | 1.80e-14 | 76.6 |
| Msa0664800 | AT3G50130.1 | 32.979 | 188 | 115 | 7 | 21 | 205 | 116 | 295 | 2.25e-21 | 98.6 |
| Msa0664800 | AT3G50140.2 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 9.12e-21 | 95.5 |
| Msa0664800 | AT3G50140.1 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 2.02e-20 | 95.5 |
| Msa0664800 | AT3G50140.1 | 26.154 | 195 | 138 | 3 | 362 | 551 | 339 | 532 | 1.69e-12 | 70.5 |
| Msa0664800 | AT3G50150.2 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.39e-19 | 92.0 |
| Msa0664800 | AT3G50150.1 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.50e-19 | 92.4 |
| Msa0664800 | AT3G50150.1 | 30.899 | 178 | 119 | 3 | 377 | 552 | 328 | 503 | 3.20e-16 | 82.0 |
| Msa0664800 | AT5G11290.2 | 32.903 | 155 | 90 | 3 | 41 | 193 | 32 | 174 | 2.50e-17 | 85.1 |
| Msa0664800 | AT3G50160.1 | 26.289 | 194 | 122 | 5 | 41 | 228 | 103 | 281 | 3.26e-17 | 85.1 |
| Msa0664800 | AT3G50160.1 | 28.796 | 191 | 129 | 4 | 364 | 552 | 310 | 495 | 4.37e-14 | 75.5 |
| Msa0664800 | AT4G31980.1 | 32.278 | 158 | 93 | 4 | 42 | 197 | 293 | 438 | 8.46e-17 | 84.3 |
| Msa0664800 | AT4G31980.1 | 26.012 | 173 | 127 | 1 | 378 | 550 | 506 | 677 | 6.66e-11 | 65.5 |
| Msa0664800 | AT3G47210.1 | 32.317 | 164 | 102 | 3 | 35 | 198 | 86 | 240 | 1.12e-15 | 80.1 |
| Msa0664800 | AT3G50190.2 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.10e-15 | 78.2 |
| Msa0664800 | AT3G50190.4 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.12e-15 | 78.6 |
| Msa0664800 | AT3G50190.3 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.12e-15 | 78.6 |
| Msa0664800 | AT3G50190.1 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 3.34e-15 | 79.0 |
| Msa0664800 | AT2G36430.1 | 27.354 | 223 | 143 | 5 | 38 | 255 | 41 | 249 | 1.38e-14 | 76.6 |
| Msa0664800 | AT3G47250.3 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.60e-14 | 75.9 |
| Msa0664800 | AT3G47250.2 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.60e-14 | 75.9 |
| Msa0664800 | AT3G47250.1 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.60e-14 | 75.9 |
| Msa0664800 | AT5G22560.1 | 26.692 | 266 | 132 | 10 | 22 | 252 | 24 | 261 | 1.92e-13 | 73.6 |
| Msa0664800 | AT5G22560.1 | 27.072 | 181 | 129 | 2 | 377 | 555 | 335 | 514 | 7.75e-11 | 65.1 |
| Msa0664800 | AT3G47200.1 | 29.518 | 166 | 100 | 5 | 35 | 196 | 39 | 191 | 8.10e-13 | 71.2 |
| Msa0664800 | AT3G47200.2 | 29.518 | 166 | 100 | 5 | 35 | 196 | 39 | 191 | 8.10e-13 | 71.2 |
| Msa0664800 | AT5G22550.1 | 28.889 | 180 | 127 | 1 | 377 | 555 | 259 | 438 | 9.32e-13 | 70.9 |
| Msa0664800 | AT5G22550.2 | 28.889 | 180 | 127 | 1 | 377 | 555 | 308 | 487 | 1.08e-12 | 70.9 |
| Msa0664800 | AT5G22550.2 | 25.000 | 236 | 139 | 7 | 32 | 252 | 34 | 246 | 1.27e-12 | 70.9 |
| Msa0664800 | AT5G22540.1 | 28.108 | 185 | 116 | 5 | 22 | 198 | 6 | 181 | 3.31e-11 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGTCCTTACCATTAT+TGG | 0.181399 | 4_4:+4069862 | Msa0664800:CDS |
| AGCAATCATTCAATGAAATT+TGG | 0.198118 | 4_4:+4070531 | Msa0664800:CDS |
| TCATTTCCTGTTTCCAATTT+AGG | 0.220417 | 4_4:-4070422 | None:intergenic |
| TGACATGATTGTGCCTAAAT+TGG | 0.220993 | 4_4:+4070409 | Msa0664800:CDS |
| GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 4_4:+4071040 | Msa0664800:CDS |
| CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 4_4:+4069803 | Msa0664800:CDS |
| TATACTTGTAGTCGCTTCTT+TGG | 0.274811 | 4_4:+4071319 | Msa0664800:CDS |
| CCTCTTCAAATTCTTCTTCA+AGG | 0.288017 | 4_4:-4069752 | None:intergenic |
| TACAAGAAGGTGCAACAAAA+AGG | 0.297447 | 4_4:+4070111 | Msa0664800:CDS |
| CTACCTTTGATGAACTTAGA+TGG | 0.311336 | 4_4:+4069709 | Msa0664800:CDS |
| TTACCTTCCTATAATTGGTT+TGG | 0.311845 | 4_4:+4070895 | Msa0664800:CDS |
| CTTTGCATTTCATAGAGTTC+TGG | 0.331900 | 4_4:-4069888 | None:intergenic |
| ATCAAGCAAATGTGCACTTT+CGG | 0.361310 | 4_4:-4070378 | None:intergenic |
| TTAACATCCAAACCAATTAT+AGG | 0.368618 | 4_4:-4070902 | None:intergenic |
| TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 4_4:+4071220 | Msa0664800:CDS |
| GTTAAAGAACTTGTGAAGTC+AGG | 0.374433 | 4_4:+4070806 | Msa0664800:CDS |
| GACCTATAAAATCTCTCAAA+AGG | 0.379762 | 4_4:+4070579 | Msa0664800:CDS |
| CTCTTCAAATTCTTCTTCAA+GGG | 0.387908 | 4_4:-4069751 | None:intergenic |
| TTTGTTCATACTTTGTCAAT+TGG | 0.390968 | 4_4:-4069980 | None:intergenic |
| CGTTCAAATCTAAGAATTTG+TGG | 0.397038 | 4_4:-4070019 | None:intergenic |
| AAGTATGAACAAAGGGTTAG+AGG | 0.411014 | 4_4:+4069990 | Msa0664800:CDS |
| TGTTGTGGAACATAAGAATC+TGG | 0.428693 | 4_4:-4069834 | None:intergenic |
| AGTCTTATGTGTTTGGTTCA+TGG | 0.433433 | 4_4:+4071227 | Msa0664800:CDS |
| AGAGTTCTGGTCTCCAATAA+TGG | 0.437374 | 4_4:-4069875 | None:intergenic |
| TATGAATCATCGGTTGGATC+GGG | 0.439610 | 4_4:+4070956 | Msa0664800:CDS |
| ATTGTGCCTAAATTGGAAAC+AGG | 0.445841 | 4_4:+4070416 | Msa0664800:CDS |
| AAAATCATAAGCAATCTTCC+AGG | 0.447323 | 4_4:+4070647 | Msa0664800:CDS |
| TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 4_4:-4069810 | None:intergenic |
| CGTTATACCGAGTTGATGAA+TGG | 0.460396 | 4_4:+4070995 | Msa0664800:CDS |
| GTTCCACAACAAGTTGCAAT+TGG | 0.462687 | 4_4:+4069846 | Msa0664800:CDS |
| CTTGATATGCTCCCATTAGT+AGG | 0.468372 | 4_4:-4070842 | None:intergenic |
| CACAAATTCTTAGATTTGAA+CGG | 0.491137 | 4_4:+4070020 | Msa0664800:CDS |
| GGTGAAGATGAAAATTCAAA+AGG | 0.496710 | 4_4:+4070491 | Msa0664800:CDS |
| GTATGAATCATCGGTTGGAT+CGG | 0.497293 | 4_4:+4070955 | Msa0664800:CDS |
| TACCTTTGATGAACTTAGAT+GGG | 0.498045 | 4_4:+4069710 | Msa0664800:CDS |
| GGACCAATTGCAACTTGTTG+TGG | 0.498583 | 4_4:-4069849 | None:intergenic |
| CTTTCGGAGACTTTAATGCT+TGG | 0.499690 | 4_4:-4070362 | None:intergenic |
| AAGTACTTGTAAAGTTTCCA+TGG | 0.499937 | 4_4:+4070624 | Msa0664800:CDS |
| ATTGACAAAGTATGAACAAA+GGG | 0.500245 | 4_4:+4069983 | Msa0664800:CDS |
| CAAATTTATGCAATACAAGA+AGG | 0.500609 | 4_4:+4070098 | Msa0664800:CDS |
| GCAAGTCATTGAGATTATCA+AGG | 0.501646 | 4_4:+4071122 | Msa0664800:CDS |
| ATCGGTTGGATCGGGACCAT+TGG | 0.507267 | 4_4:+4070964 | Msa0664800:CDS |
| AACTTTACAAGTACTTTCAA+AGG | 0.510207 | 4_4:-4070617 | None:intergenic |
| TTCACAAGTTCTTTAACAGA+AGG | 0.512475 | 4_4:-4070800 | None:intergenic |
| AACTCTTCAATCATCTTGAA+AGG | 0.518028 | 4_4:-4070338 | None:intergenic |
| GAAGAATTTGAAGAGGAAGA+TGG | 0.518706 | 4_4:+4069759 | Msa0664800:CDS |
| ACCTATAAAATCTCTCAAAA+GGG | 0.519470 | 4_4:+4070580 | Msa0664800:CDS |
| CAAGTCATTGAGATTATCAA+GGG | 0.529827 | 4_4:+4071123 | Msa0664800:CDS |
| TTTAGAATTATATGACATAG+TGG | 0.530037 | 4_4:-4069685 | None:intergenic |
| CTTGGTTGCGTATGAATCAT+CGG | 0.532252 | 4_4:+4070946 | Msa0664800:CDS |
| GTTGCGTATGAATCATCGGT+TGG | 0.541693 | 4_4:+4070950 | Msa0664800:CDS |
| TTAAAGAACTTGTGAAGTCA+GGG | 0.544355 | 4_4:+4070807 | Msa0664800:CDS |
| ATAAAGAAGTTGCTGATATG+TGG | 0.544942 | 4_4:+4071089 | Msa0664800:CDS |
| ATAGTGATTTCTTCAATCAA+AGG | 0.550729 | 4_4:-4070776 | None:intergenic |
| TCACATTTAGTTGACTATGC+TGG | 0.552649 | 4_4:+4070152 | Msa0664800:CDS |
| TGTTGAGATTCAACAAGAAG+AGG | 0.558169 | 4_4:+4070457 | Msa0664800:CDS |
| CACCCATCTAAGTTCATCAA+AGG | 0.560565 | 4_4:-4069712 | None:intergenic |
| TCTGGTCTCCAATAATGGTA+AGG | 0.564617 | 4_4:-4069870 | None:intergenic |
| CCTTGAAGAAGAATTTGAAG+AGG | 0.574533 | 4_4:+4069752 | Msa0664800:CDS |
| GTGATTTCTTCAATCAAAGG+TGG | 0.576916 | 4_4:-4070773 | None:intergenic |
| GAAGTTGCTGATATGTGGAA+TGG | 0.576981 | 4_4:+4071094 | Msa0664800:CDS |
| ATTCTTTCAAAACTTAACAA+AGG | 0.581545 | 4_4:+4070557 | Msa0664800:CDS |
| CATCCAAACCAATTATAGGA+AGG | 0.589371 | 4_4:-4070898 | None:intergenic |
| ACTTTGTCAATTGGTCAACA+AGG | 0.606799 | 4_4:-4069971 | None:intergenic |
| GTATAACGCGTTATAACCAA+TGG | 0.608845 | 4_4:-4070980 | None:intergenic |
| AATTGACAAAGTATGAACAA+AGG | 0.638794 | 4_4:+4069982 | Msa0664800:CDS |
| AGATTTGAACGGAGAAACGA+TGG | 0.639181 | 4_4:+4070031 | Msa0664800:CDS |
| TATAATTCCATTCATCAACT+CGG | 0.660857 | 4_4:-4071002 | None:intergenic |
| CAAGAAGAGGAACAAGACAA+AGG | 0.664135 | 4_4:+4070470 | Msa0664800:CDS |
| GAATGGAATTATAGACTCGG+AGG | 0.673937 | 4_4:+4071012 | Msa0664800:CDS |
| ATCATAAGCAATCTTCCAGG+AGG | 0.678359 | 4_4:+4070650 | Msa0664800:CDS |
| TGAACGGAGAAACGATGGTG+TGG | 0.683030 | 4_4:+4070036 | Msa0664800:CDS |
| TAAAGAACTTGTGAAGTCAG+GGG | 0.688848 | 4_4:+4070808 | Msa0664800:CDS |
| GATGAATGGAATTATAGACT+CGG | 0.697026 | 4_4:+4071009 | Msa0664800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTCAAAACAAATAA+CGG | - | chr4_4:4070236-4070255 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | + | chr4_4:4070701-4070720 | Msa0664800:CDS | 15.0% |
| !!! | AATTTTCTCAAAACAAATAA+CGG | - | chr4_4:4070236-4070255 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | + | chr4_4:4070701-4070720 | Msa0664800:CDS | 15.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | - | chr4_4:4069688-4069707 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+AGG | + | chr4_4:4070296-4070315 | Msa0664800:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | + | chr4_4:4070557-4070576 | Msa0664800:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | - | chr4_4:4070692-4070711 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | + | chr4_4:4071183-4071202 | Msa0664800:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | + | chr4_4:4071273-4071292 | Msa0664800:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | + | chr4_4:4071274-4071293 | Msa0664800:CDS | 20.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | - | chr4_4:4069688-4069707 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+AGG | + | chr4_4:4070296-4070315 | Msa0664800:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | + | chr4_4:4070557-4070576 | Msa0664800:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | - | chr4_4:4070692-4070711 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | + | chr4_4:4071183-4071202 | Msa0664800:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | + | chr4_4:4071273-4071292 | Msa0664800:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | + | chr4_4:4071274-4071293 | Msa0664800:CDS | 20.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | - | chr4_4:4069928-4069947 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | - | chr4_4:4069983-4070002 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | + | chr4_4:4069982-4070001 | Msa0664800:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | + | chr4_4:4069983-4070002 | Msa0664800:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | + | chr4_4:4070020-4070039 | Msa0664800:CDS | 25.0% |
| ! | CAAATTTATGCAATACAAGA+AGG | + | chr4_4:4070098-4070117 | Msa0664800:CDS | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | + | chr4_4:4070531-4070550 | Msa0664800:CDS | 25.0% |
| ! | ACCTATAAAATCTCTCAAAA+GGG | + | chr4_4:4070580-4070599 | Msa0664800:CDS | 25.0% |
| ! | AACTTTACAAGTACTTTCAA+AGG | - | chr4_4:4070620-4070639 | None:intergenic | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | - | chr4_4:4070779-4070798 | None:intergenic | 25.0% |
| !! | TGAATTTTTCTCCTACTAAT+GGG | + | chr4_4:4070831-4070850 | Msa0664800:CDS | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | + | chr4_4:4070890-4070909 | Msa0664800:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | - | chr4_4:4070905-4070924 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr4_4:4070930-4070949 | None:intergenic | 25.0% |
| ! | TATAATTCCATTCATCAACT+CGG | - | chr4_4:4071005-4071024 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr4_4:4071041-4071060 | Msa0664800:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr4_4:4071220-4071239 | Msa0664800:CDS | 25.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | - | chr4_4:4069928-4069947 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | - | chr4_4:4069983-4070002 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | + | chr4_4:4069982-4070001 | Msa0664800:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | + | chr4_4:4069983-4070002 | Msa0664800:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | + | chr4_4:4070020-4070039 | Msa0664800:CDS | 25.0% |
| ! | CAAATTTATGCAATACAAGA+AGG | + | chr4_4:4070098-4070117 | Msa0664800:CDS | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | + | chr4_4:4070531-4070550 | Msa0664800:CDS | 25.0% |
| ! | ACCTATAAAATCTCTCAAAA+GGG | + | chr4_4:4070580-4070599 | Msa0664800:CDS | 25.0% |
| ! | AACTTTACAAGTACTTTCAA+AGG | - | chr4_4:4070620-4070639 | None:intergenic | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | - | chr4_4:4070779-4070798 | None:intergenic | 25.0% |
| !! | TGAATTTTTCTCCTACTAAT+GGG | + | chr4_4:4070831-4070850 | Msa0664800:CDS | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | + | chr4_4:4070890-4070909 | Msa0664800:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | - | chr4_4:4070905-4070924 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr4_4:4070930-4070949 | None:intergenic | 25.0% |
| ! | TATAATTCCATTCATCAACT+CGG | - | chr4_4:4071005-4071024 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr4_4:4071041-4071060 | Msa0664800:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr4_4:4071220-4071239 | Msa0664800:CDS | 25.0% |
| TACCTTTGATGAACTTAGAT+GGG | + | chr4_4:4069710-4069729 | Msa0664800:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | - | chr4_4:4069754-4069773 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | - | chr4_4:4070022-4070041 | None:intergenic | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | - | chr4_4:4070341-4070360 | None:intergenic | 30.0% | |
| TCATTTCCTGTTTCCAATTT+AGG | - | chr4_4:4070425-4070444 | None:intergenic | 30.0% | |
| GGTGAAGATGAAAATTCAAA+AGG | + | chr4_4:4070491-4070510 | Msa0664800:CDS | 30.0% | |
| GACCTATAAAATCTCTCAAA+AGG | + | chr4_4:4070579-4070598 | Msa0664800:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+AGG | - | chr4_4:4070584-4070603 | None:intergenic | 30.0% |
| AAGTACTTGTAAAGTTTCCA+TGG | + | chr4_4:4070624-4070643 | Msa0664800:CDS | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | - | chr4_4:4070644-4070663 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | + | chr4_4:4070647-4070666 | Msa0664800:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | - | chr4_4:4070803-4070822 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | + | chr4_4:4070807-4070826 | Msa0664800:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | + | chr4_4:4070830-4070849 | Msa0664800:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | + | chr4_4:4070895-4070914 | Msa0664800:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr4_4:4070928-4070947 | Msa0664800:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | + | chr4_4:4071009-4071028 | Msa0664800:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr4_4:4071040-4071059 | Msa0664800:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | + | chr4_4:4071089-4071108 | Msa0664800:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | + | chr4_4:4071123-4071142 | Msa0664800:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | + | chr4_4:4071135-4071154 | Msa0664800:CDS | 30.0% |
| TACCTTTGATGAACTTAGAT+GGG | + | chr4_4:4069710-4069729 | Msa0664800:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | - | chr4_4:4069754-4069773 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | - | chr4_4:4070022-4070041 | None:intergenic | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | - | chr4_4:4070341-4070360 | None:intergenic | 30.0% | |
| TCATTTCCTGTTTCCAATTT+AGG | - | chr4_4:4070425-4070444 | None:intergenic | 30.0% | |
| GGTGAAGATGAAAATTCAAA+AGG | + | chr4_4:4070491-4070510 | Msa0664800:CDS | 30.0% | |
| GACCTATAAAATCTCTCAAA+AGG | + | chr4_4:4070579-4070598 | Msa0664800:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+AGG | - | chr4_4:4070584-4070603 | None:intergenic | 30.0% |
| AAGTACTTGTAAAGTTTCCA+TGG | + | chr4_4:4070624-4070643 | Msa0664800:CDS | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | - | chr4_4:4070644-4070663 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | + | chr4_4:4070647-4070666 | Msa0664800:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | - | chr4_4:4070803-4070822 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | + | chr4_4:4070807-4070826 | Msa0664800:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | + | chr4_4:4070830-4070849 | Msa0664800:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | + | chr4_4:4070895-4070914 | Msa0664800:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr4_4:4070928-4070947 | Msa0664800:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | + | chr4_4:4071009-4071028 | Msa0664800:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr4_4:4071040-4071059 | Msa0664800:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | + | chr4_4:4071089-4071108 | Msa0664800:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | + | chr4_4:4071123-4071142 | Msa0664800:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | + | chr4_4:4071135-4071154 | Msa0664800:CDS | 30.0% |
| CTACCTTTGATGAACTTAGA+TGG | + | chr4_4:4069709-4069728 | Msa0664800:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | - | chr4_4:4069755-4069774 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | + | chr4_4:4069752-4069771 | Msa0664800:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | + | chr4_4:4069759-4069778 | Msa0664800:CDS | 35.0% | |
| TGTTGTGGAACATAAGAATC+TGG | - | chr4_4:4069837-4069856 | None:intergenic | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | + | chr4_4:4069862-4069881 | Msa0664800:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | - | chr4_4:4069891-4069910 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | - | chr4_4:4069974-4069993 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | + | chr4_4:4069990-4070009 | Msa0664800:CDS | 35.0% | |
| ! | TACAAGAAGGTGCAACAAAA+AGG | + | chr4_4:4070111-4070130 | Msa0664800:CDS | 35.0% |
| ! | ACAAGAAGGTGCAACAAAAA+GGG | + | chr4_4:4070112-4070131 | Msa0664800:CDS | 35.0% |
| TCACATTTAGTTGACTATGC+TGG | + | chr4_4:4070152-4070171 | Msa0664800:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | - | chr4_4:4070381-4070400 | None:intergenic | 35.0% | |
| TGACATGATTGTGCCTAAAT+TGG | + | chr4_4:4070409-4070428 | Msa0664800:CDS | 35.0% | |
| ATTGTGCCTAAATTGGAAAC+AGG | + | chr4_4:4070416-4070435 | Msa0664800:CDS | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | + | chr4_4:4070457-4070476 | Msa0664800:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | - | chr4_4:4070668-4070687 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | - | chr4_4:4070776-4070795 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | + | chr4_4:4070806-4070825 | Msa0664800:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | + | chr4_4:4070808-4070827 | Msa0664800:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | - | chr4_4:4070901-4070920 | None:intergenic | 35.0% | |
| GTATAACGCGTTATAACCAA+TGG | - | chr4_4:4070983-4071002 | None:intergenic | 35.0% | |
| GCAAGTCATTGAGATTATCA+AGG | + | chr4_4:4071122-4071141 | Msa0664800:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr4_4:4071227-4071246 | Msa0664800:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | + | chr4_4:4071319-4071338 | Msa0664800:CDS | 35.0% | |
| CTACCTTTGATGAACTTAGA+TGG | + | chr4_4:4069709-4069728 | Msa0664800:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | - | chr4_4:4069755-4069774 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | + | chr4_4:4069752-4069771 | Msa0664800:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | + | chr4_4:4069759-4069778 | Msa0664800:CDS | 35.0% | |
| TGTTGTGGAACATAAGAATC+TGG | - | chr4_4:4069837-4069856 | None:intergenic | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | + | chr4_4:4069862-4069881 | Msa0664800:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | - | chr4_4:4069891-4069910 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | - | chr4_4:4069974-4069993 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | + | chr4_4:4069990-4070009 | Msa0664800:CDS | 35.0% | |
| ! | TACAAGAAGGTGCAACAAAA+AGG | + | chr4_4:4070111-4070130 | Msa0664800:CDS | 35.0% |
| ! | ACAAGAAGGTGCAACAAAAA+GGG | + | chr4_4:4070112-4070131 | Msa0664800:CDS | 35.0% |
| TCACATTTAGTTGACTATGC+TGG | + | chr4_4:4070152-4070171 | Msa0664800:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | - | chr4_4:4070381-4070400 | None:intergenic | 35.0% | |
| TGACATGATTGTGCCTAAAT+TGG | + | chr4_4:4070409-4070428 | Msa0664800:CDS | 35.0% | |
| ATTGTGCCTAAATTGGAAAC+AGG | + | chr4_4:4070416-4070435 | Msa0664800:CDS | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | + | chr4_4:4070457-4070476 | Msa0664800:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | - | chr4_4:4070668-4070687 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | - | chr4_4:4070776-4070795 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | + | chr4_4:4070806-4070825 | Msa0664800:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | + | chr4_4:4070808-4070827 | Msa0664800:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | - | chr4_4:4070901-4070920 | None:intergenic | 35.0% | |
| GTATAACGCGTTATAACCAA+TGG | - | chr4_4:4070983-4071002 | None:intergenic | 35.0% | |
| GCAAGTCATTGAGATTATCA+AGG | + | chr4_4:4071122-4071141 | Msa0664800:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr4_4:4071227-4071246 | Msa0664800:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | + | chr4_4:4071319-4071338 | Msa0664800:CDS | 35.0% | |
| CACCCATCTAAGTTCATCAA+AGG | - | chr4_4:4069715-4069734 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr4_4:4069803-4069822 | Msa0664800:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr4_4:4069813-4069832 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr4_4:4069846-4069865 | Msa0664800:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | - | chr4_4:4069873-4069892 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | - | chr4_4:4069878-4069897 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | + | chr4_4:4070031-4070050 | Msa0664800:CDS | 40.0% | |
| CTTTCGGAGACTTTAATGCT+TGG | - | chr4_4:4070365-4070384 | None:intergenic | 40.0% | |
| CAAGAAGAGGAACAAGACAA+AGG | + | chr4_4:4070470-4070489 | Msa0664800:CDS | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | + | chr4_4:4070650-4070669 | Msa0664800:CDS | 40.0% | |
| CTTGATATGCTCCCATTAGT+AGG | - | chr4_4:4070845-4070864 | None:intergenic | 40.0% | |
| CTTGGTTGCGTATGAATCAT+CGG | + | chr4_4:4070946-4070965 | Msa0664800:CDS | 40.0% | |
| ! | GTATGAATCATCGGTTGGAT+CGG | + | chr4_4:4070955-4070974 | Msa0664800:CDS | 40.0% |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr4_4:4070956-4070975 | Msa0664800:CDS | 40.0% |
| !! | CGTTATACCGAGTTGATGAA+TGG | + | chr4_4:4070995-4071014 | Msa0664800:CDS | 40.0% |
| GAATGGAATTATAGACTCGG+AGG | + | chr4_4:4071012-4071031 | Msa0664800:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | + | chr4_4:4071094-4071113 | Msa0664800:CDS | 40.0% | |
| CACCCATCTAAGTTCATCAA+AGG | - | chr4_4:4069715-4069734 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr4_4:4069803-4069822 | Msa0664800:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr4_4:4069813-4069832 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr4_4:4069846-4069865 | Msa0664800:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | - | chr4_4:4069873-4069892 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | - | chr4_4:4069878-4069897 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | + | chr4_4:4070031-4070050 | Msa0664800:CDS | 40.0% | |
| CTTTCGGAGACTTTAATGCT+TGG | - | chr4_4:4070365-4070384 | None:intergenic | 40.0% | |
| CAAGAAGAGGAACAAGACAA+AGG | + | chr4_4:4070470-4070489 | Msa0664800:CDS | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | + | chr4_4:4070650-4070669 | Msa0664800:CDS | 40.0% | |
| CTTGATATGCTCCCATTAGT+AGG | - | chr4_4:4070845-4070864 | None:intergenic | 40.0% | |
| CTTGGTTGCGTATGAATCAT+CGG | + | chr4_4:4070946-4070965 | Msa0664800:CDS | 40.0% | |
| ! | GTATGAATCATCGGTTGGAT+CGG | + | chr4_4:4070955-4070974 | Msa0664800:CDS | 40.0% |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr4_4:4070956-4070975 | Msa0664800:CDS | 40.0% |
| !! | CGTTATACCGAGTTGATGAA+TGG | + | chr4_4:4070995-4071014 | Msa0664800:CDS | 40.0% |
| GAATGGAATTATAGACTCGG+AGG | + | chr4_4:4071012-4071031 | Msa0664800:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | + | chr4_4:4071094-4071113 | Msa0664800:CDS | 40.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr4_4:4069852-4069871 | None:intergenic | 45.0% |
| GTTGCGTATGAATCATCGGT+TGG | + | chr4_4:4070950-4070969 | Msa0664800:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr4_4:4069852-4069871 | None:intergenic | 45.0% |
| GTTGCGTATGAATCATCGGT+TGG | + | chr4_4:4070950-4070969 | Msa0664800:CDS | 45.0% | |
| TGAACGGAGAAACGATGGTG+TGG | + | chr4_4:4070036-4070055 | Msa0664800:CDS | 50.0% | |
| TGAACGGAGAAACGATGGTG+TGG | + | chr4_4:4070036-4070055 | Msa0664800:CDS | 50.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | + | chr4_4:4070964-4070983 | Msa0664800:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | + | chr4_4:4070964-4070983 | Msa0664800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4069669 | 4071363 | 4069669 | ID=Msa0664800;Name=Msa0664800 |
| chr4_4 | mRNA | 4069669 | 4071363 | 4069669 | ID=Msa0664800-mRNA-1;Parent=Msa0664800;Name=Msa0664800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|564 |
| chr4_4 | exon | 4069669 | 4071363 | 4069669 | ID=Msa0664800-mRNA-1:exon:1319;Parent=Msa0664800-mRNA-1 |
| chr4_4 | CDS | 4069669 | 4071363 | 4069669 | ID=Msa0664800-mRNA-1:cds;Parent=Msa0664800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
