Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868000 | AES86511.1 | 98.936 | 564 | 6 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868000 | sp|P0C897|Y3264_ARATH | 47.048 | 525 | 237 | 8 | 9 | 528 | 9 | 497 | 2.40e-163 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868000 | G7JFQ2 | 98.936 | 564 | 6 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626710 | Msa0868000 | 0.843416 | 1.420346e-58 | -8.615850e-47 |
| Msa0664800 | Msa0868000 | 0.857102 | 2.051556e-62 | -8.615850e-47 |
| Msa0483630 | Msa0868000 | 0.994949 | 1.232173e-211 | -8.615850e-47 |
| Msa0586860 | Msa0868000 | 0.814476 | 1.511390e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868000 | MtrunA17_Chr4g0002861 | 98.936 | 564 | 6 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1143 |
| Msa0868000 | MtrunA17_Chr4g0002901 | 90.143 | 558 | 53 | 2 | 1 | 557 | 1 | 557 | 0.0 | 1008 |
| Msa0868000 | MtrunA17_Chr4g0002911 | 73.835 | 558 | 142 | 4 | 1 | 557 | 1 | 555 | 0.0 | 810 |
| Msa0868000 | MtrunA17_Chr7g0220521 | 59.820 | 555 | 211 | 5 | 1 | 554 | 1 | 544 | 0.0 | 677 |
| Msa0868000 | MtrunA17_Chr2g0300311 | 31.020 | 245 | 140 | 7 | 21 | 254 | 30 | 256 | 4.31e-20 | 93.6 |
| Msa0868000 | MtrunA17_Chr2g0297831 | 31.667 | 240 | 144 | 6 | 21 | 254 | 47 | 272 | 3.47e-19 | 90.9 |
| Msa0868000 | MtrunA17_Chr5g0439641 | 28.774 | 212 | 134 | 6 | 357 | 557 | 246 | 451 | 6.11e-18 | 86.7 |
| Msa0868000 | MtrunA17_Chr5g0439641 | 27.419 | 248 | 150 | 10 | 18 | 246 | 4 | 240 | 3.86e-13 | 71.6 |
| Msa0868000 | MtrunA17_Chr5g0439661 | 32.386 | 176 | 106 | 6 | 43 | 214 | 29 | 195 | 7.84e-18 | 82.0 |
| Msa0868000 | MtrunA17_Chr7g0265891 | 29.493 | 217 | 140 | 5 | 38 | 252 | 47 | 252 | 3.79e-17 | 84.3 |
| Msa0868000 | MtrunA17_Chr7g0265891 | 26.543 | 162 | 112 | 3 | 377 | 531 | 270 | 431 | 3.76e-11 | 65.5 |
| Msa0868000 | MtrunA17_Chr5g0439721 | 33.333 | 189 | 117 | 6 | 373 | 559 | 257 | 438 | 1.68e-16 | 82.4 |
| Msa0868000 | MtrunA17_Chr5g0439721 | 26.721 | 247 | 140 | 9 | 18 | 246 | 4 | 227 | 7.42e-14 | 73.9 |
| Msa0868000 | MtrunA17_Chr5g0440401 | 29.412 | 187 | 124 | 5 | 373 | 557 | 38 | 218 | 2.00e-15 | 75.9 |
| Msa0868000 | MtrunA17_Chr5g0401791 | 30.058 | 173 | 106 | 7 | 21 | 187 | 78 | 241 | 4.57e-15 | 78.2 |
| Msa0868000 | MtrunA17_Chr2g0296801 | 29.050 | 179 | 121 | 5 | 377 | 552 | 175 | 350 | 5.02e-15 | 76.6 |
| Msa0868000 | MtrunA17_Chr6g0452601 | 26.347 | 167 | 106 | 2 | 42 | 208 | 25 | 174 | 6.74e-15 | 77.0 |
| Msa0868000 | MtrunA17_Chr6g0452601 | 26.554 | 177 | 129 | 1 | 375 | 550 | 242 | 418 | 1.78e-11 | 66.2 |
| Msa0868000 | MtrunA17_Chr8g0335061 | 32.934 | 167 | 96 | 6 | 42 | 204 | 27 | 181 | 1.50e-14 | 76.3 |
| Msa0868000 | MtrunA17_Chr8g0335061 | 25.806 | 186 | 118 | 3 | 373 | 539 | 245 | 429 | 9.78e-12 | 67.4 |
| Msa0868000 | MtrunA17_Chr7g0238251 | 24.494 | 494 | 270 | 18 | 59 | 527 | 49 | 464 | 3.38e-14 | 75.1 |
| Msa0868000 | MtrunA17_Chr6g0452161 | 26.190 | 168 | 108 | 2 | 40 | 207 | 23 | 174 | 6.17e-14 | 73.9 |
| Msa0868000 | MtrunA17_Chr5g0439681 | 28.571 | 182 | 121 | 5 | 379 | 557 | 137 | 312 | 7.38e-14 | 72.8 |
| Msa0868000 | MtrunA17_Chr6g0452551 | 25.309 | 162 | 104 | 2 | 42 | 203 | 25 | 169 | 8.53e-14 | 73.6 |
| Msa0868000 | MtrunA17_Chr6g0452561 | 29.000 | 200 | 131 | 3 | 358 | 550 | 230 | 425 | 1.00e-13 | 73.6 |
| Msa0868000 | MtrunA17_Chr6g0452561 | 25.789 | 190 | 124 | 6 | 20 | 207 | 5 | 179 | 2.88e-11 | 65.9 |
| Msa0868000 | MtrunA17_Chr8g0335011 | 30.588 | 170 | 105 | 4 | 42 | 198 | 36 | 205 | 2.96e-13 | 72.4 |
| Msa0868000 | MtrunA17_Chr8g0335011 | 30.496 | 141 | 93 | 3 | 401 | 540 | 349 | 485 | 4.10e-11 | 65.5 |
| Msa0868000 | MtrunA17_Chr8g0334951 | 32.075 | 159 | 93 | 6 | 42 | 196 | 29 | 176 | 3.13e-13 | 72.0 |
| Msa0868000 | MtrunA17_Chr6g0452531 | 24.873 | 197 | 127 | 4 | 22 | 218 | 7 | 182 | 4.17e-13 | 71.6 |
| Msa0868000 | MtrunA17_Chr6g0452531 | 28.492 | 179 | 127 | 1 | 373 | 550 | 232 | 410 | 1.91e-12 | 69.3 |
| Msa0868000 | MtrunA17_Chr6g0452501 | 24.691 | 162 | 105 | 2 | 42 | 203 | 25 | 169 | 4.38e-13 | 71.2 |
| Msa0868000 | MtrunA17_Chr6g0452501 | 28.977 | 176 | 122 | 3 | 377 | 550 | 236 | 410 | 1.96e-11 | 66.2 |
| Msa0868000 | MtrunA17_Chr6g0452611 | 25.309 | 162 | 106 | 3 | 42 | 203 | 24 | 170 | 6.95e-13 | 70.9 |
| Msa0868000 | MtrunA17_Chr7g0238511 | 27.660 | 188 | 131 | 4 | 372 | 555 | 252 | 438 | 7.11e-13 | 70.9 |
| Msa0868000 | MtrunA17_Chr6g0457371 | 26.519 | 181 | 114 | 5 | 43 | 222 | 26 | 188 | 8.34e-13 | 70.5 |
| Msa0868000 | MtrunA17_Chr8g0334971 | 26.667 | 225 | 146 | 7 | 42 | 258 | 27 | 240 | 1.12e-12 | 70.1 |
| Msa0868000 | MtrunA17_Chr8g0334971 | 30.534 | 131 | 90 | 1 | 409 | 539 | 301 | 430 | 3.75e-12 | 68.6 |
| Msa0868000 | MtrunA17_Chr7g0238051 | 28.767 | 146 | 102 | 2 | 411 | 555 | 223 | 367 | 1.30e-12 | 69.7 |
| Msa0868000 | MtrunA17_Chr3g0118601 | 29.480 | 173 | 121 | 1 | 379 | 550 | 277 | 449 | 3.19e-12 | 68.9 |
| Msa0868000 | MtrunA17_Chr7g0238231 | 29.452 | 146 | 101 | 2 | 411 | 555 | 348 | 492 | 3.20e-12 | 68.9 |
| Msa0868000 | MtrunA17_Chr7g0238131 | 28.947 | 190 | 124 | 4 | 373 | 555 | 232 | 417 | 3.90e-12 | 68.6 |
| Msa0868000 | MtrunA17_Chr8g0334911 | 31.250 | 160 | 96 | 6 | 42 | 198 | 28 | 176 | 6.40e-12 | 67.8 |
| Msa0868000 | MtrunA17_Chr7g0218171 | 28.161 | 174 | 124 | 1 | 378 | 550 | 124 | 297 | 6.85e-12 | 66.6 |
| Msa0868000 | MtrunA17_Chr7g0242071 | 31.847 | 157 | 99 | 3 | 41 | 196 | 28 | 177 | 1.53e-11 | 67.0 |
| Msa0868000 | MtrunA17_Chr8g0335071 | 29.286 | 140 | 97 | 2 | 411 | 550 | 318 | 455 | 1.55e-11 | 66.6 |
| Msa0868000 | MtrunA17_Chr8g0352491 | 27.429 | 175 | 100 | 5 | 398 | 551 | 17 | 185 | 2.31e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868000 | AT3G02645.1 | 47.048 | 525 | 237 | 8 | 9 | 528 | 9 | 497 | 2.44e-164 | 478 |
| Msa0868000 | AT3G50180.1 | 32.922 | 243 | 144 | 11 | 19 | 253 | 153 | 384 | 4.40e-27 | 115 |
| Msa0868000 | AT3G50180.1 | 31.148 | 183 | 116 | 5 | 377 | 552 | 403 | 582 | 4.69e-14 | 75.5 |
| Msa0868000 | AT3G50120.1 | 36.364 | 187 | 108 | 7 | 21 | 204 | 80 | 258 | 4.00e-25 | 109 |
| Msa0868000 | AT3G50120.1 | 29.050 | 179 | 121 | 3 | 377 | 552 | 350 | 525 | 4.60e-13 | 72.4 |
| Msa0868000 | AT3G50170.2 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 6.45e-24 | 105 |
| Msa0868000 | AT3G50170.1 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 1.69e-23 | 104 |
| Msa0868000 | AT3G50170.1 | 30.168 | 179 | 119 | 3 | 377 | 552 | 358 | 533 | 1.75e-14 | 76.6 |
| Msa0868000 | AT3G50130.1 | 32.979 | 188 | 115 | 7 | 21 | 205 | 116 | 295 | 2.36e-21 | 98.2 |
| Msa0868000 | AT3G50140.2 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 1.06e-20 | 95.1 |
| Msa0868000 | AT3G50140.1 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 2.23e-20 | 95.1 |
| Msa0868000 | AT3G50140.1 | 26.154 | 195 | 138 | 3 | 362 | 551 | 339 | 532 | 1.65e-12 | 70.5 |
| Msa0868000 | AT3G50150.2 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.66e-19 | 91.7 |
| Msa0868000 | AT3G50150.1 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.76e-19 | 92.4 |
| Msa0868000 | AT3G50150.1 | 30.899 | 178 | 119 | 3 | 377 | 552 | 328 | 503 | 3.08e-16 | 82.0 |
| Msa0868000 | AT3G50160.1 | 26.289 | 194 | 122 | 5 | 41 | 228 | 103 | 281 | 3.15e-17 | 85.1 |
| Msa0868000 | AT3G50160.1 | 28.796 | 191 | 129 | 4 | 364 | 552 | 310 | 495 | 4.04e-14 | 75.5 |
| Msa0868000 | AT5G11290.2 | 32.903 | 155 | 90 | 3 | 41 | 193 | 32 | 174 | 4.71e-17 | 84.0 |
| Msa0868000 | AT4G31980.1 | 32.278 | 158 | 93 | 4 | 42 | 197 | 293 | 438 | 5.09e-17 | 85.1 |
| Msa0868000 | AT4G31980.1 | 26.012 | 173 | 127 | 1 | 378 | 550 | 506 | 677 | 6.33e-11 | 65.9 |
| Msa0868000 | AT3G47210.1 | 32.317 | 164 | 102 | 3 | 35 | 198 | 86 | 240 | 1.15e-15 | 80.1 |
| Msa0868000 | AT3G50190.2 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.34e-15 | 78.2 |
| Msa0868000 | AT3G50190.4 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.37e-15 | 78.6 |
| Msa0868000 | AT3G50190.3 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.37e-15 | 78.6 |
| Msa0868000 | AT3G50190.1 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 3.49e-15 | 79.0 |
| Msa0868000 | AT2G36430.1 | 26.009 | 223 | 146 | 4 | 38 | 255 | 41 | 249 | 1.14e-14 | 77.0 |
| Msa0868000 | AT3G47250.3 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.49e-14 | 75.9 |
| Msa0868000 | AT3G47250.2 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.49e-14 | 75.9 |
| Msa0868000 | AT3G47250.1 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 2.49e-14 | 75.9 |
| Msa0868000 | AT5G22560.1 | 26.692 | 266 | 132 | 10 | 22 | 252 | 24 | 261 | 2.17e-13 | 73.2 |
| Msa0868000 | AT5G22560.1 | 27.072 | 181 | 129 | 2 | 377 | 555 | 335 | 514 | 7.88e-11 | 65.1 |
| Msa0868000 | AT3G47200.1 | 29.268 | 164 | 103 | 3 | 35 | 196 | 39 | 191 | 6.79e-13 | 71.6 |
| Msa0868000 | AT3G47200.2 | 29.268 | 164 | 103 | 3 | 35 | 196 | 39 | 191 | 6.79e-13 | 71.6 |
| Msa0868000 | AT5G22550.1 | 28.889 | 180 | 127 | 1 | 377 | 555 | 259 | 438 | 9.74e-13 | 70.9 |
| Msa0868000 | AT5G22550.2 | 28.889 | 180 | 127 | 1 | 377 | 555 | 308 | 487 | 1.06e-12 | 70.9 |
| Msa0868000 | AT5G22550.2 | 25.000 | 236 | 139 | 7 | 32 | 252 | 34 | 246 | 1.27e-12 | 70.9 |
| Msa0868000 | AT5G22540.1 | 28.108 | 185 | 116 | 4 | 22 | 198 | 6 | 181 | 3.31e-11 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGTCCTTACCATTAT+TGG | 0.181399 | 6_1:+1381459 | Msa0868000:CDS |
| AGCAATCATTCAATGAAATT+TGG | 0.198118 | 6_1:+1382128 | Msa0868000:CDS |
| TCATTTCCTGTTTCCAATTT+AGG | 0.220417 | 6_1:-1382019 | None:intergenic |
| TGACATGATTGTGCCTAAAT+TGG | 0.220993 | 6_1:+1382006 | Msa0868000:CDS |
| GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 6_1:+1382637 | Msa0868000:CDS |
| CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 6_1:+1381400 | Msa0868000:CDS |
| TATACTTGTAGTCGCTTCTT+TGG | 0.274811 | 6_1:+1382916 | Msa0868000:CDS |
| CCTCTTCAAATTCTTCTTCA+AGG | 0.288017 | 6_1:-1381349 | None:intergenic |
| TGCAAGAAGGTGCAACAAAA+AGG | 0.295985 | 6_1:+1381708 | Msa0868000:CDS |
| CTACCTTTGATGAACTTAGA+TGG | 0.311336 | 6_1:+1381306 | Msa0868000:CDS |
| TTACCTTCCTATAATTGGTT+TGG | 0.311845 | 6_1:+1382492 | Msa0868000:CDS |
| CTTTGCATTTCATAGAGTTC+TGG | 0.331900 | 6_1:-1381485 | None:intergenic |
| ATCAAGCAAATGTGCACTTT+CGG | 0.361310 | 6_1:-1381975 | None:intergenic |
| TTAACATCCAAACCAATTAT+AGG | 0.368618 | 6_1:-1382499 | None:intergenic |
| TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 6_1:+1382817 | Msa0868000:CDS |
| GTTAAAGAACTTGTGAAGTC+AGG | 0.374433 | 6_1:+1382403 | Msa0868000:CDS |
| GACCTATAAAATCTCTCAAA+AGG | 0.379762 | 6_1:+1382176 | Msa0868000:CDS |
| CTCTTCAAATTCTTCTTCAA+GGG | 0.387908 | 6_1:-1381348 | None:intergenic |
| TTTGTTCATACTTTGTCAAT+TGG | 0.390968 | 6_1:-1381577 | None:intergenic |
| CGTTCAAATCTAAGAATTTG+TGG | 0.397038 | 6_1:-1381616 | None:intergenic |
| TGTTGTGGAACGTAAGAATC+TGG | 0.408953 | 6_1:-1381431 | None:intergenic |
| AAGTATGAACAAAGGGTTAG+AGG | 0.411014 | 6_1:+1381587 | Msa0868000:CDS |
| AGTCTTATGTGTTTGGTTCA+TGG | 0.433433 | 6_1:+1382824 | Msa0868000:CDS |
| AGAGTTCTGGTCTCCAATAA+TGG | 0.437374 | 6_1:-1381472 | None:intergenic |
| TATGAATCATCGGTTGGATC+GGG | 0.439610 | 6_1:+1382553 | Msa0868000:CDS |
| ATTGTGCCTAAATTGGAAAC+AGG | 0.445841 | 6_1:+1382013 | Msa0868000:CDS |
| AAAATCATAAGCAATCTTCC+AGG | 0.447323 | 6_1:+1382244 | Msa0868000:CDS |
| TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 6_1:-1381407 | None:intergenic |
| CGTTATACCGAGTTGATGAA+TGG | 0.460396 | 6_1:+1382592 | Msa0868000:CDS |
| CTTGATATGCTCCCATTAGT+AGG | 0.468372 | 6_1:-1382439 | None:intergenic |
| GTTCCACAACAAGTTGCAAT+TGG | 0.472042 | 6_1:+1381443 | Msa0868000:CDS |
| CAAATTTATGCAATGCAAGA+AGG | 0.480891 | 6_1:+1381695 | Msa0868000:CDS |
| CACAAATTCTTAGATTTGAA+CGG | 0.491137 | 6_1:+1381617 | Msa0868000:CDS |
| GGTGAAGATGAAAATTCAAA+AGG | 0.496710 | 6_1:+1382088 | Msa0868000:CDS |
| GTATGAATCATCGGTTGGAT+CGG | 0.497293 | 6_1:+1382552 | Msa0868000:CDS |
| TACCTTTGATGAACTTAGAT+GGG | 0.498045 | 6_1:+1381307 | Msa0868000:CDS |
| GGACCAATTGCAACTTGTTG+TGG | 0.498583 | 6_1:-1381446 | None:intergenic |
| CTTTCGGAGACTTTAATGCT+TGG | 0.499690 | 6_1:-1381959 | None:intergenic |
| AAGTACTTGTAAAGTTTCCA+TGG | 0.499937 | 6_1:+1382221 | Msa0868000:CDS |
| ATTGACAAAGTATGAACAAA+GGG | 0.500245 | 6_1:+1381580 | Msa0868000:CDS |
| GCAAGTCATTGAGATTATCA+AGG | 0.501646 | 6_1:+1382719 | Msa0868000:CDS |
| ATCGGTTGGATCGGGACCAT+TGG | 0.507267 | 6_1:+1382561 | Msa0868000:CDS |
| AACTTTACAAGTACTTTCAA+AGG | 0.510207 | 6_1:-1382214 | None:intergenic |
| TTCACAAGTTCTTTAACAGA+AGG | 0.512475 | 6_1:-1382397 | None:intergenic |
| AACTCTTCAATCATCTTGAA+AGG | 0.518028 | 6_1:-1381935 | None:intergenic |
| GAAGAATTTGAAGAGGAAGA+TGG | 0.518706 | 6_1:+1381356 | Msa0868000:CDS |
| ACCTATAAAATCTCTCAAAA+GGG | 0.519470 | 6_1:+1382177 | Msa0868000:CDS |
| CAAGTCATTGAGATTATCAA+GGG | 0.529827 | 6_1:+1382720 | Msa0868000:CDS |
| TTTAGAATTATATGACATAG+TGG | 0.530037 | 6_1:-1381282 | None:intergenic |
| CTTGGTTGCGTATGAATCAT+CGG | 0.532252 | 6_1:+1382543 | Msa0868000:CDS |
| GTTGCGTATGAATCATCGGT+TGG | 0.541693 | 6_1:+1382547 | Msa0868000:CDS |
| TTAAAGAACTTGTGAAGTCA+GGG | 0.544355 | 6_1:+1382404 | Msa0868000:CDS |
| ATAAAGAAGTTGCTGATATG+TGG | 0.544942 | 6_1:+1382686 | Msa0868000:CDS |
| ATAGTGATTTCTTCAATCAA+AGG | 0.550729 | 6_1:-1382373 | None:intergenic |
| TCACATTTAGTTGACTATGC+TGG | 0.552649 | 6_1:+1381749 | Msa0868000:CDS |
| TGTTGAGATTCAACAAGAAG+AGG | 0.558169 | 6_1:+1382054 | Msa0868000:CDS |
| CACCCATCTAAGTTCATCAA+AGG | 0.560565 | 6_1:-1381309 | None:intergenic |
| TCTGGTCTCCAATAATGGTA+AGG | 0.564617 | 6_1:-1381467 | None:intergenic |
| CCTTGAAGAAGAATTTGAAG+AGG | 0.574533 | 6_1:+1381349 | Msa0868000:CDS |
| GTGATTTCTTCAATCAAAGG+TGG | 0.576916 | 6_1:-1382370 | None:intergenic |
| GAAGTTGCTGATATGTGGAA+TGG | 0.576981 | 6_1:+1382691 | Msa0868000:CDS |
| ATTCTTTCAAAACTTAACAA+AGG | 0.581545 | 6_1:+1382154 | Msa0868000:CDS |
| CATCCAAACCAATTATAGGA+AGG | 0.589371 | 6_1:-1382495 | None:intergenic |
| ACTTTGTCAATTGGTCAACA+AGG | 0.606799 | 6_1:-1381568 | None:intergenic |
| GTATAACGCGTTATAACCAA+TGG | 0.608845 | 6_1:-1382577 | None:intergenic |
| AATTGACAAAGTATGAACAA+AGG | 0.638794 | 6_1:+1381579 | Msa0868000:CDS |
| AGATTTGAACGGAGAAACGA+TGG | 0.639181 | 6_1:+1381628 | Msa0868000:CDS |
| TATAATTCCATTCATCAACT+CGG | 0.660857 | 6_1:-1382599 | None:intergenic |
| CAAGAAGAGGAACAAGACAA+AGG | 0.664135 | 6_1:+1382067 | Msa0868000:CDS |
| GAATGGAATTATAGACTCGG+AGG | 0.673937 | 6_1:+1382609 | Msa0868000:CDS |
| ATCATAAGCAATCTTCCAGG+AGG | 0.678359 | 6_1:+1382247 | Msa0868000:CDS |
| TGAACGGAGAAACGATGGTG+TGG | 0.683030 | 6_1:+1381633 | Msa0868000:CDS |
| TAAAGAACTTGTGAAGTCAG+GGG | 0.688848 | 6_1:+1382405 | Msa0868000:CDS |
| GATGAATGGAATTATAGACT+CGG | 0.697026 | 6_1:+1382606 | Msa0868000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTCAAAACAAATAA+CGG | - | chr6_1:1381833-1381852 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | + | chr6_1:1382298-1382317 | Msa0868000:CDS | 15.0% |
| !!! | AATTTTCTCAAAACAAATAA+CGG | - | chr6_1:1381833-1381852 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | + | chr6_1:1382298-1382317 | Msa0868000:CDS | 15.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | - | chr6_1:1381285-1381304 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+AGG | + | chr6_1:1381893-1381912 | Msa0868000:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | + | chr6_1:1382154-1382173 | Msa0868000:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | - | chr6_1:1382289-1382308 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | + | chr6_1:1382780-1382799 | Msa0868000:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | + | chr6_1:1382870-1382889 | Msa0868000:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | + | chr6_1:1382871-1382890 | Msa0868000:CDS | 20.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | - | chr6_1:1381285-1381304 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+AGG | + | chr6_1:1381893-1381912 | Msa0868000:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | + | chr6_1:1382154-1382173 | Msa0868000:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | - | chr6_1:1382289-1382308 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | + | chr6_1:1382780-1382799 | Msa0868000:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | + | chr6_1:1382870-1382889 | Msa0868000:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | + | chr6_1:1382871-1382890 | Msa0868000:CDS | 20.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | - | chr6_1:1381525-1381544 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | - | chr6_1:1381580-1381599 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | + | chr6_1:1381579-1381598 | Msa0868000:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | + | chr6_1:1381580-1381599 | Msa0868000:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | + | chr6_1:1381617-1381636 | Msa0868000:CDS | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | + | chr6_1:1382128-1382147 | Msa0868000:CDS | 25.0% |
| ! | ACCTATAAAATCTCTCAAAA+GGG | + | chr6_1:1382177-1382196 | Msa0868000:CDS | 25.0% |
| ! | AACTTTACAAGTACTTTCAA+AGG | - | chr6_1:1382217-1382236 | None:intergenic | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | - | chr6_1:1382376-1382395 | None:intergenic | 25.0% |
| !! | TGAATTTTTCTCCTACTAAT+GGG | + | chr6_1:1382428-1382447 | Msa0868000:CDS | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | + | chr6_1:1382487-1382506 | Msa0868000:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | - | chr6_1:1382502-1382521 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr6_1:1382527-1382546 | None:intergenic | 25.0% |
| ! | TATAATTCCATTCATCAACT+CGG | - | chr6_1:1382602-1382621 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr6_1:1382638-1382657 | Msa0868000:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr6_1:1382817-1382836 | Msa0868000:CDS | 25.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | - | chr6_1:1381525-1381544 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | - | chr6_1:1381580-1381599 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | + | chr6_1:1381579-1381598 | Msa0868000:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | + | chr6_1:1381580-1381599 | Msa0868000:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | + | chr6_1:1381617-1381636 | Msa0868000:CDS | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | + | chr6_1:1382128-1382147 | Msa0868000:CDS | 25.0% |
| ! | ACCTATAAAATCTCTCAAAA+GGG | + | chr6_1:1382177-1382196 | Msa0868000:CDS | 25.0% |
| ! | AACTTTACAAGTACTTTCAA+AGG | - | chr6_1:1382217-1382236 | None:intergenic | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | - | chr6_1:1382376-1382395 | None:intergenic | 25.0% |
| !! | TGAATTTTTCTCCTACTAAT+GGG | + | chr6_1:1382428-1382447 | Msa0868000:CDS | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | + | chr6_1:1382487-1382506 | Msa0868000:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | - | chr6_1:1382502-1382521 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | - | chr6_1:1382527-1382546 | None:intergenic | 25.0% |
| ! | TATAATTCCATTCATCAACT+CGG | - | chr6_1:1382602-1382621 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | + | chr6_1:1382638-1382657 | Msa0868000:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | + | chr6_1:1382817-1382836 | Msa0868000:CDS | 25.0% |
| TACCTTTGATGAACTTAGAT+GGG | + | chr6_1:1381307-1381326 | Msa0868000:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | - | chr6_1:1381351-1381370 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | - | chr6_1:1381619-1381638 | None:intergenic | 30.0% | |
| CAAATTTATGCAATGCAAGA+AGG | + | chr6_1:1381695-1381714 | Msa0868000:CDS | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | - | chr6_1:1381938-1381957 | None:intergenic | 30.0% | |
| TCATTTCCTGTTTCCAATTT+AGG | - | chr6_1:1382022-1382041 | None:intergenic | 30.0% | |
| GGTGAAGATGAAAATTCAAA+AGG | + | chr6_1:1382088-1382107 | Msa0868000:CDS | 30.0% | |
| GACCTATAAAATCTCTCAAA+AGG | + | chr6_1:1382176-1382195 | Msa0868000:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+AGG | - | chr6_1:1382181-1382200 | None:intergenic | 30.0% |
| AAGTACTTGTAAAGTTTCCA+TGG | + | chr6_1:1382221-1382240 | Msa0868000:CDS | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | - | chr6_1:1382241-1382260 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | + | chr6_1:1382244-1382263 | Msa0868000:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | - | chr6_1:1382400-1382419 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | + | chr6_1:1382404-1382423 | Msa0868000:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | + | chr6_1:1382427-1382446 | Msa0868000:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | + | chr6_1:1382492-1382511 | Msa0868000:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr6_1:1382525-1382544 | Msa0868000:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | + | chr6_1:1382606-1382625 | Msa0868000:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr6_1:1382637-1382656 | Msa0868000:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | + | chr6_1:1382686-1382705 | Msa0868000:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | + | chr6_1:1382720-1382739 | Msa0868000:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | + | chr6_1:1382732-1382751 | Msa0868000:CDS | 30.0% |
| TACCTTTGATGAACTTAGAT+GGG | + | chr6_1:1381307-1381326 | Msa0868000:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | - | chr6_1:1381351-1381370 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | - | chr6_1:1381619-1381638 | None:intergenic | 30.0% | |
| CAAATTTATGCAATGCAAGA+AGG | + | chr6_1:1381695-1381714 | Msa0868000:CDS | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | - | chr6_1:1381938-1381957 | None:intergenic | 30.0% | |
| TCATTTCCTGTTTCCAATTT+AGG | - | chr6_1:1382022-1382041 | None:intergenic | 30.0% | |
| GGTGAAGATGAAAATTCAAA+AGG | + | chr6_1:1382088-1382107 | Msa0868000:CDS | 30.0% | |
| GACCTATAAAATCTCTCAAA+AGG | + | chr6_1:1382176-1382195 | Msa0868000:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+AGG | - | chr6_1:1382181-1382200 | None:intergenic | 30.0% |
| AAGTACTTGTAAAGTTTCCA+TGG | + | chr6_1:1382221-1382240 | Msa0868000:CDS | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | - | chr6_1:1382241-1382260 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | + | chr6_1:1382244-1382263 | Msa0868000:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | - | chr6_1:1382400-1382419 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | + | chr6_1:1382404-1382423 | Msa0868000:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | + | chr6_1:1382427-1382446 | Msa0868000:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | + | chr6_1:1382492-1382511 | Msa0868000:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | + | chr6_1:1382525-1382544 | Msa0868000:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | + | chr6_1:1382606-1382625 | Msa0868000:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | + | chr6_1:1382637-1382656 | Msa0868000:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | + | chr6_1:1382686-1382705 | Msa0868000:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | + | chr6_1:1382720-1382739 | Msa0868000:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | + | chr6_1:1382732-1382751 | Msa0868000:CDS | 30.0% |
| CTACCTTTGATGAACTTAGA+TGG | + | chr6_1:1381306-1381325 | Msa0868000:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | - | chr6_1:1381352-1381371 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | + | chr6_1:1381349-1381368 | Msa0868000:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | + | chr6_1:1381356-1381375 | Msa0868000:CDS | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | + | chr6_1:1381459-1381478 | Msa0868000:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | - | chr6_1:1381488-1381507 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | - | chr6_1:1381571-1381590 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | + | chr6_1:1381587-1381606 | Msa0868000:CDS | 35.0% | |
| TCACATTTAGTTGACTATGC+TGG | + | chr6_1:1381749-1381768 | Msa0868000:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | - | chr6_1:1381978-1381997 | None:intergenic | 35.0% | |
| TGACATGATTGTGCCTAAAT+TGG | + | chr6_1:1382006-1382025 | Msa0868000:CDS | 35.0% | |
| ATTGTGCCTAAATTGGAAAC+AGG | + | chr6_1:1382013-1382032 | Msa0868000:CDS | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | + | chr6_1:1382054-1382073 | Msa0868000:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | - | chr6_1:1382265-1382284 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | - | chr6_1:1382373-1382392 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | + | chr6_1:1382403-1382422 | Msa0868000:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | + | chr6_1:1382405-1382424 | Msa0868000:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | - | chr6_1:1382498-1382517 | None:intergenic | 35.0% | |
| GTATAACGCGTTATAACCAA+TGG | - | chr6_1:1382580-1382599 | None:intergenic | 35.0% | |
| GCAAGTCATTGAGATTATCA+AGG | + | chr6_1:1382719-1382738 | Msa0868000:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr6_1:1382824-1382843 | Msa0868000:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | + | chr6_1:1382916-1382935 | Msa0868000:CDS | 35.0% | |
| CTACCTTTGATGAACTTAGA+TGG | + | chr6_1:1381306-1381325 | Msa0868000:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | - | chr6_1:1381352-1381371 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | + | chr6_1:1381349-1381368 | Msa0868000:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | + | chr6_1:1381356-1381375 | Msa0868000:CDS | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | + | chr6_1:1381459-1381478 | Msa0868000:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | - | chr6_1:1381488-1381507 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | - | chr6_1:1381571-1381590 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | + | chr6_1:1381587-1381606 | Msa0868000:CDS | 35.0% | |
| TCACATTTAGTTGACTATGC+TGG | + | chr6_1:1381749-1381768 | Msa0868000:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | - | chr6_1:1381978-1381997 | None:intergenic | 35.0% | |
| TGACATGATTGTGCCTAAAT+TGG | + | chr6_1:1382006-1382025 | Msa0868000:CDS | 35.0% | |
| ATTGTGCCTAAATTGGAAAC+AGG | + | chr6_1:1382013-1382032 | Msa0868000:CDS | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | + | chr6_1:1382054-1382073 | Msa0868000:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | - | chr6_1:1382265-1382284 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | - | chr6_1:1382373-1382392 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | + | chr6_1:1382403-1382422 | Msa0868000:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | + | chr6_1:1382405-1382424 | Msa0868000:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | - | chr6_1:1382498-1382517 | None:intergenic | 35.0% | |
| GTATAACGCGTTATAACCAA+TGG | - | chr6_1:1382580-1382599 | None:intergenic | 35.0% | |
| GCAAGTCATTGAGATTATCA+AGG | + | chr6_1:1382719-1382738 | Msa0868000:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | + | chr6_1:1382824-1382843 | Msa0868000:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | + | chr6_1:1382916-1382935 | Msa0868000:CDS | 35.0% | |
| CACCCATCTAAGTTCATCAA+AGG | - | chr6_1:1381312-1381331 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr6_1:1381400-1381419 | Msa0868000:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr6_1:1381410-1381429 | None:intergenic | 40.0% | |
| TGTTGTGGAACGTAAGAATC+TGG | - | chr6_1:1381434-1381453 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr6_1:1381443-1381462 | Msa0868000:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | - | chr6_1:1381470-1381489 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | - | chr6_1:1381475-1381494 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | + | chr6_1:1381628-1381647 | Msa0868000:CDS | 40.0% | |
| ! | TGCAAGAAGGTGCAACAAAA+AGG | + | chr6_1:1381708-1381727 | Msa0868000:CDS | 40.0% |
| ! | GCAAGAAGGTGCAACAAAAA+GGG | + | chr6_1:1381709-1381728 | Msa0868000:CDS | 40.0% |
| CTTTCGGAGACTTTAATGCT+TGG | - | chr6_1:1381962-1381981 | None:intergenic | 40.0% | |
| CAAGAAGAGGAACAAGACAA+AGG | + | chr6_1:1382067-1382086 | Msa0868000:CDS | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | + | chr6_1:1382247-1382266 | Msa0868000:CDS | 40.0% | |
| CTTGATATGCTCCCATTAGT+AGG | - | chr6_1:1382442-1382461 | None:intergenic | 40.0% | |
| CTTGGTTGCGTATGAATCAT+CGG | + | chr6_1:1382543-1382562 | Msa0868000:CDS | 40.0% | |
| ! | GTATGAATCATCGGTTGGAT+CGG | + | chr6_1:1382552-1382571 | Msa0868000:CDS | 40.0% |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr6_1:1382553-1382572 | Msa0868000:CDS | 40.0% |
| !! | CGTTATACCGAGTTGATGAA+TGG | + | chr6_1:1382592-1382611 | Msa0868000:CDS | 40.0% |
| GAATGGAATTATAGACTCGG+AGG | + | chr6_1:1382609-1382628 | Msa0868000:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | + | chr6_1:1382691-1382710 | Msa0868000:CDS | 40.0% | |
| CACCCATCTAAGTTCATCAA+AGG | - | chr6_1:1381312-1381331 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | + | chr6_1:1381400-1381419 | Msa0868000:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | - | chr6_1:1381410-1381429 | None:intergenic | 40.0% | |
| TGTTGTGGAACGTAAGAATC+TGG | - | chr6_1:1381434-1381453 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | + | chr6_1:1381443-1381462 | Msa0868000:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | - | chr6_1:1381470-1381489 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | - | chr6_1:1381475-1381494 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | + | chr6_1:1381628-1381647 | Msa0868000:CDS | 40.0% | |
| ! | TGCAAGAAGGTGCAACAAAA+AGG | + | chr6_1:1381708-1381727 | Msa0868000:CDS | 40.0% |
| ! | GCAAGAAGGTGCAACAAAAA+GGG | + | chr6_1:1381709-1381728 | Msa0868000:CDS | 40.0% |
| CTTTCGGAGACTTTAATGCT+TGG | - | chr6_1:1381962-1381981 | None:intergenic | 40.0% | |
| CAAGAAGAGGAACAAGACAA+AGG | + | chr6_1:1382067-1382086 | Msa0868000:CDS | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | + | chr6_1:1382247-1382266 | Msa0868000:CDS | 40.0% | |
| CTTGATATGCTCCCATTAGT+AGG | - | chr6_1:1382442-1382461 | None:intergenic | 40.0% | |
| CTTGGTTGCGTATGAATCAT+CGG | + | chr6_1:1382543-1382562 | Msa0868000:CDS | 40.0% | |
| ! | GTATGAATCATCGGTTGGAT+CGG | + | chr6_1:1382552-1382571 | Msa0868000:CDS | 40.0% |
| ! | TATGAATCATCGGTTGGATC+GGG | + | chr6_1:1382553-1382572 | Msa0868000:CDS | 40.0% |
| !! | CGTTATACCGAGTTGATGAA+TGG | + | chr6_1:1382592-1382611 | Msa0868000:CDS | 40.0% |
| GAATGGAATTATAGACTCGG+AGG | + | chr6_1:1382609-1382628 | Msa0868000:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | + | chr6_1:1382691-1382710 | Msa0868000:CDS | 40.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr6_1:1381449-1381468 | None:intergenic | 45.0% |
| GTTGCGTATGAATCATCGGT+TGG | + | chr6_1:1382547-1382566 | Msa0868000:CDS | 45.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | - | chr6_1:1381449-1381468 | None:intergenic | 45.0% |
| GTTGCGTATGAATCATCGGT+TGG | + | chr6_1:1382547-1382566 | Msa0868000:CDS | 45.0% | |
| TGAACGGAGAAACGATGGTG+TGG | + | chr6_1:1381633-1381652 | Msa0868000:CDS | 50.0% | |
| TGAACGGAGAAACGATGGTG+TGG | + | chr6_1:1381633-1381652 | Msa0868000:CDS | 50.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | + | chr6_1:1382561-1382580 | Msa0868000:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | + | chr6_1:1382561-1382580 | Msa0868000:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1381266 | 1382960 | 1381266 | ID=Msa0868000;Name=Msa0868000 |
| chr6_1 | mRNA | 1381266 | 1382960 | 1381266 | ID=Msa0868000-mRNA-1;Parent=Msa0868000;Name=Msa0868000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|564 |
| chr6_1 | exon | 1381266 | 1382960 | 1381266 | ID=Msa0868000-mRNA-1:exon:357;Parent=Msa0868000-mRNA-1 |
| chr6_1 | CDS | 1381266 | 1382960 | 1381266 | ID=Msa0868000-mRNA-1:cds;Parent=Msa0868000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
