Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665560 | XP_013454671.1 | 93.151 | 146 | 10 | 0 | 1 | 146 | 1 | 146 | 9.53e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665560 | sp|Q9FFY3|LTG30_ARATH | 47.445 | 137 | 65 | 3 | 10 | 139 | 7 | 143 | 3.44e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665560 | A0A072UG85 | 93.151 | 146 | 10 | 0 | 1 | 146 | 1 | 146 | 4.55e-92 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0665560 | Msa1012800 | 0.814198 | 1.740349e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665560 | MtrunA17_Chr4g0003641 | 93.151 | 146 | 10 | 0 | 1 | 146 | 1 | 146 | 8.76e-96 | 275 |
| Msa0665560 | MtrunA17_Chr4g0056621 | 34.906 | 106 | 62 | 4 | 5 | 107 | 4 | 105 | 7.90e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665560 | AT5G13900.1 | 47.445 | 137 | 65 | 3 | 10 | 139 | 7 | 143 | 3.49e-39 | 131 |
Find 54 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGTTGCTATCTGAGTTCT+TGG | 0.265872 | 4_4:+5141818 | None:intergenic |
| ACTATTATACACATGTTATC+AGG | 0.278425 | 4_4:-5141741 | Msa0665560:CDS |
| CTTAATTGCATTTATTGTAT+TGG | 0.309709 | 4_4:-5142610 | Msa0665560:CDS |
| GTTATCAGGGCCAACTAAAC+AGG | 0.322121 | 4_4:-5141727 | Msa0665560:CDS |
| ACTAAACAGGGCTGGACCTT+AGG | 0.350914 | 4_4:-5141714 | Msa0665560:CDS |
| CTATCTGAGTTCTTGGAGCC+AGG | 0.368930 | 4_4:+5141825 | None:intergenic |
| GGAGCGCCGCCGTGAATTGC+CGG | 0.372586 | 4_4:+5139847 | None:intergenic |
| TCCGGTCACCGGCGGTGCTC+CGG | 0.386136 | 4_4:-5139827 | Msa0665560:CDS |
| AAGGTCCAGCCCTGTTTAGT+TGG | 0.395729 | 4_4:+5141717 | None:intergenic |
| AATGGATCACAACAGCTATC+AGG | 0.400276 | 4_4:+5142495 | None:intergenic |
| GGCGGTGCTCCGGCAATTCA+CGG | 0.401928 | 4_4:-5139856 | Msa0665560:CDS |
| CGCCGGAGCAGCCTGTGATC+TGG | 0.419884 | 4_4:-5139880 | Msa0665560:CDS |
| AGTGATGCTCAGAGTTTGCC+TGG | 0.428622 | 4_4:-5142381 | Msa0665560:CDS |
| GGCAATTCACGGCGGCGCTC+CGG | 0.433666 | 4_4:-5139845 | Msa0665560:CDS |
| CGCCAGATCACAGGCTGCTC+CGG | 0.437059 | 4_4:+5139878 | None:intergenic |
| AGGCTGCTCCGGCGTTGACC+AGG | 0.439537 | 4_4:+5139889 | None:intergenic |
| CACGGCGGCGCTCCGGTCAC+CGG | 0.440463 | 4_4:-5139838 | Msa0665560:CDS |
| GTGATCTGGCGGCGGTGCTC+CGG | 0.450640 | 4_4:-5139866 | Msa0665560:CDS |
| CCAGGACATGTTCATCAACT+TGG | 0.453194 | 4_4:+5141791 | None:intergenic |
| TTGGTAACATTGGTCTCAAA+AGG | 0.456282 | 4_4:-5142591 | Msa0665560:CDS |
| GATTCAATCATAGATTTCAA+TGG | 0.457497 | 4_4:+5142477 | None:intergenic |
| CTAAACAGGGCTGGACCTTA+GGG | 0.480862 | 4_4:-5141713 | Msa0665560:intron |
| GCCGGAGCACCGCCGGTGAC+CGG | 0.481792 | 4_4:+5139826 | None:intergenic |
| GAGCACCGCCGCCAGATCAC+AGG | 0.483022 | 4_4:+5139869 | None:intergenic |
| TGTAGCTTGGTAAGTAATAG+AGG | 0.492623 | 4_4:-5142438 | Msa0665560:CDS |
| CGTGTTATTTCAGATTCCCC+TGG | 0.504286 | 4_4:-5141843 | Msa0665560:intron |
| AAAACTCGCCGGAGCACCGC+CGG | 0.512615 | 4_4:+5139819 | None:intergenic |
| GGCGGCGCTCCGGTCACCGG+CGG | 0.520269 | 4_4:-5139835 | Msa0665560:CDS |
| ATTTATTGTATTGGTAACAT+TGG | 0.522078 | 4_4:-5142601 | Msa0665560:CDS |
| TGCAAGATGCTTATGTAGCT+TGG | 0.524904 | 4_4:-5142451 | Msa0665560:CDS |
| CCAAGTTGATGAACATGTCC+TGG | 0.531866 | 4_4:-5141791 | Msa0665560:CDS |
| ACAAGACAAGCTGAGAAAGC+TGG | 0.539901 | 4_4:-5142414 | Msa0665560:CDS |
| TGAAATCATCATAACTAGCC+AGG | 0.545446 | 4_4:+5141773 | None:intergenic |
| AGCAGCCTGTGATCTGGCGG+CGG | 0.552962 | 4_4:-5139874 | Msa0665560:CDS |
| CAGGGCCAACTAAACAGGGC+TGG | 0.553578 | 4_4:-5141722 | Msa0665560:CDS |
| TATCTGAGTTCTTGGAGCCA+GGG | 0.555866 | 4_4:+5141826 | None:intergenic |
| CAGAGTTTGCCTGGGAGATG+TGG | 0.558352 | 4_4:-5142372 | Msa0665560:CDS |
| CTTGTTTAAACTACCTCAGT+GGG | 0.561020 | 4_4:-5142530 | Msa0665560:CDS |
| CTATTATACACATGTTATCA+GGG | 0.572754 | 4_4:-5141740 | Msa0665560:CDS |
| ATCTGAGTTCTTGGAGCCAG+GGG | 0.576023 | 4_4:+5141827 | None:intergenic |
| TGATGGCTGTGGTCAACACC+TGG | 0.589949 | 4_4:-5139907 | Msa0665560:CDS |
| ATAAATGCAATTAAGCAAAG+TGG | 0.596891 | 4_4:+5142618 | None:intergenic |
| ACATGCTGACCACATCTCCC+AGG | 0.601458 | 4_4:+5142363 | None:intergenic |
| CCACTGAGGTAGTTTAAACA+AGG | 0.617736 | 4_4:+5142531 | None:intergenic |
| AGAAGGAAATCATACTTGAG+AGG | 0.620662 | 4_4:+5142325 | None:intergenic |
| TTATCAGGGCCAACTAAACA+GGG | 0.620709 | 4_4:-5141726 | Msa0665560:CDS |
| GTGATGCTCAGAGTTTGCCT+GGG | 0.622268 | 4_4:-5142380 | Msa0665560:CDS |
| CGGAGCAGCCTGTGATCTGG+CGG | 0.629024 | 4_4:-5139877 | Msa0665560:CDS |
| CAAGAACTCAGATAGCAACT+CGG | 0.638659 | 4_4:-5141817 | Msa0665560:CDS |
| ATACTTGAGAGGCATGACAA+TGG | 0.643563 | 4_4:+5142336 | None:intergenic |
| GGATCACAACAGCTATCAGG+TGG | 0.647561 | 4_4:+5142498 | None:intergenic |
| CCTTGTTTAAACTACCTCAG+TGG | 0.655484 | 4_4:-5142531 | Msa0665560:CDS |
| GGTCAACACCTGGTCAACGC+CGG | 0.660878 | 4_4:-5139897 | Msa0665560:CDS |
| GGTGCTCCGGCAATTCACGG+CGG | 0.703085 | 4_4:-5139853 | Msa0665560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAGATAAATACA+AGG | + | chr4_4:5141098-5141117 | None:intergenic | 10.0% |
| !!! | TTCTTTGTTTTTTTTTTTTT+TGG | - | chr4_4:5141775-5141794 | Msa0665560:CDS | 10.0% |
| !!! | AGAGTTTTTATTTAAAAATT+GGG | + | chr4_4:5142499-5142518 | None:intergenic | 10.0% |
| !! | GGTAAATTTAAAAAATAATG+AGG | - | chr4_4:5140275-5140294 | Msa0665560:intron | 15.0% |
| !!! | ATATTTTTTTTTCATTGTTG+TGG | - | chr4_4:5141300-5141319 | Msa0665560:intron | 15.0% |
| !!! | CTTTTTTTATAACAAATCAA+TGG | + | chr4_4:5141668-5141687 | None:intergenic | 15.0% |
| !! | AATATTAATATTACGTATCA+AGG | + | chr4_4:5141901-5141920 | None:intergenic | 15.0% |
| !!! | GAGTTTTTATTTAAAAATTG+GGG | + | chr4_4:5142498-5142517 | None:intergenic | 15.0% |
| !!! | GAGAGTTTTTATTTAAAAAT+TGG | + | chr4_4:5142500-5142519 | None:intergenic | 15.0% |
| !! | CTTAATTGCATTTATTGTAT+TGG | - | chr4_4:5139838-5139857 | Msa0665560:CDS | 20.0% |
| !!! | ATTTATTGTATTGGTAACAT+TGG | - | chr4_4:5139847-5139866 | Msa0665560:CDS | 20.0% |
| !!! | TTAGTAGAAAGTATTATGAA+TGG | - | chr4_4:5140254-5140273 | Msa0665560:intron | 20.0% |
| !! | ATGCATCTAATTATATCTTA+TGG | + | chr4_4:5140351-5140370 | None:intergenic | 20.0% |
| !!! | AAGTAGAGATTCATATTTTT+AGG | + | chr4_4:5140512-5140531 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGACTCATATCTT+GGG | + | chr4_4:5140790-5140809 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGACTCATATCT+TGG | + | chr4_4:5140791-5140810 | None:intergenic | 20.0% |
| !!! | AAGGAATTTTTGTTTTTAGT+GGG | + | chr4_4:5140846-5140865 | None:intergenic | 20.0% |
| !!! | GAAATTACATGTTATTTGAT+TGG | - | chr4_4:5141348-5141367 | Msa0665560:intron | 20.0% |
| !!! | TTATTTTGTTTTTCTAGTTG+TGG | - | chr4_4:5141373-5141392 | Msa0665560:intron | 20.0% |
| !! | TTGTTATAAAAAAAGTCCAA+TGG | - | chr4_4:5141673-5141692 | Msa0665560:intron | 20.0% |
| !! | TTCATTAAATTCATCTGTTA+TGG | + | chr4_4:5142071-5142090 | None:intergenic | 20.0% |
| !! | ATGAATAGTTCTTACTAATT+TGG | - | chr4_4:5142157-5142176 | Msa0665560:intron | 20.0% |
| ! | ATAAATGCAATTAAGCAAAG+TGG | + | chr4_4:5139833-5139852 | None:intergenic | 25.0% |
| ! | GATTCAATCATAGATTTCAA+TGG | + | chr4_4:5139974-5139993 | None:intergenic | 25.0% |
| ! | ACAAAAATTGGACTAAAAGA+AGG | + | chr4_4:5140143-5140162 | None:intergenic | 25.0% |
| ! | CATGGTAAGTTAACAAAAAT+TGG | + | chr4_4:5140155-5140174 | None:intergenic | 25.0% |
| ! | AAAATTAGGGATAGATAACA+TGG | + | chr4_4:5140173-5140192 | None:intergenic | 25.0% |
| ! | ACTATTATACACATGTTATC+AGG | - | chr4_4:5140707-5140726 | Msa0665560:intron | 25.0% |
| ! | CTATTATACACATGTTATCA+GGG | - | chr4_4:5140708-5140727 | Msa0665560:intron | 25.0% |
| !!! | GAAGGAATTTTTGTTTTTAG+TGG | + | chr4_4:5140847-5140866 | None:intergenic | 25.0% |
| ! | TCAAGTTTGAACATCTTATA+TGG | + | chr4_4:5141330-5141349 | None:intergenic | 25.0% |
| !! | ACTATCAAATTTTGCAAGTA+CGG | - | chr4_4:5141514-5141533 | Msa0665560:intron | 25.0% |
| ! | TTAGCATATTCATAAACGAA+TGG | - | chr4_4:5141563-5141582 | Msa0665560:intron | 25.0% |
| ! | TTAATGAATGAATAGAGAAG+AGG | - | chr4_4:5142083-5142102 | Msa0665560:intron | 25.0% |
| ! | AAGCCCATTAAATAAACAAT+AGG | - | chr4_4:5142455-5142474 | Msa0665560:CDS | 25.0% |
| !!! | TTTGTCAGATTTTTAGTTGA+TGG | - | chr4_4:5142524-5142543 | Msa0665560:CDS | 25.0% |
| AATTAGACATCGAGTAGATA+AGG | + | chr4_4:5140312-5140331 | None:intergenic | 30.0% | |
| TTAAATCGGGGAAGAATAAA+AGG | + | chr4_4:5140919-5140938 | None:intergenic | 30.0% | |
| AGAGGAAACGGAAATTAAAT+CGG | + | chr4_4:5140933-5140952 | None:intergenic | 30.0% | |
| !! | TGTTTTAGGCCTATTAGAAT+TGG | - | chr4_4:5140963-5140982 | Msa0665560:intron | 30.0% |
| !! | GTTTTAGGCCTATTAGAATT+GGG | - | chr4_4:5140964-5140983 | Msa0665560:intron | 30.0% |
| TAGAAGTAACTCCAAATTGA+GGG | - | chr4_4:5141437-5141456 | Msa0665560:intron | 30.0% | |
| ! | TTTTTCTTCAACCCTCAATT+TGG | + | chr4_4:5141451-5141470 | None:intergenic | 30.0% |
| GGTTGAAGAAAAAATTGAAG+TGG | - | chr4_4:5141458-5141477 | Msa0665560:intron | 30.0% | |
| TTCATAAACGAATGGAGTAT+TGG | - | chr4_4:5141571-5141590 | Msa0665560:intron | 30.0% | |
| ATCAATGGCTAACATTCAAT+GGG | + | chr4_4:5141653-5141672 | None:intergenic | 30.0% | |
| AATCAATGGCTAACATTCAA+TGG | + | chr4_4:5141654-5141673 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGCAGAATGC+TGG | - | chr4_4:5141786-5141805 | Msa0665560:CDS | 30.0% |
| !!! | TTTTTTTTTGGCAGAATGCT+GGG | - | chr4_4:5141787-5141806 | Msa0665560:CDS | 30.0% |
| TGTGAAAGAATGTTAATCTG+TGG | - | chr4_4:5141860-5141879 | Msa0665560:intron | 30.0% | |
| ! | GTGGAAATCATTTTGAATCT+TGG | - | chr4_4:5142302-5142321 | Msa0665560:intron | 30.0% |
| ! | ATTTTGAATCTTGGATCTGA+GGG | - | chr4_4:5142311-5142330 | Msa0665560:intron | 30.0% |
| TAAAAAGCAGCAAACAAAAC+AGG | - | chr4_4:5142403-5142422 | Msa0665560:CDS | 30.0% | |
| !! | TTAATGGGCTTAGCATATTT+GGG | + | chr4_4:5142446-5142465 | None:intergenic | 30.0% |
| !! | TTTAATGGGCTTAGCATATT+TGG | + | chr4_4:5142447-5142466 | None:intergenic | 30.0% |
| GGGCCTATTGTTTATTTAAT+GGG | + | chr4_4:5142461-5142480 | None:intergenic | 30.0% | |
| ! | TTGGTAACATTGGTCTCAAA+AGG | - | chr4_4:5139857-5139876 | Msa0665560:CDS | 35.0% |
| CTTGTTTAAACTACCTCAGT+GGG | - | chr4_4:5139918-5139937 | Msa0665560:CDS | 35.0% | |
| TGTAGCTTGGTAAGTAATAG+AGG | - | chr4_4:5140010-5140029 | Msa0665560:intron | 35.0% | |
| AGAAGGAAATCATACTTGAG+AGG | + | chr4_4:5140126-5140145 | None:intergenic | 35.0% | |
| TATTCTATACTGTCGTCTGT+CGG | - | chr4_4:5140379-5140398 | Msa0665560:intron | 35.0% | |
| TGAAATCATCATAACTAGCC+AGG | + | chr4_4:5140678-5140697 | None:intergenic | 35.0% | |
| AGAATAAAAGGAAAGTCCGA+TGG | + | chr4_4:5140907-5140926 | None:intergenic | 35.0% | |
| AGGAAACGGAAATTAAATCG+GGG | + | chr4_4:5140931-5140950 | None:intergenic | 35.0% | |
| GAGGAAACGGAAATTAAATC+GGG | + | chr4_4:5140932-5140951 | None:intergenic | 35.0% | |
| CTAAAACAAGACAACAGAAG+AGG | + | chr4_4:5140951-5140970 | None:intergenic | 35.0% | |
| !!! | CTCTTCTGTTGTCTTGTTTT+AGG | - | chr4_4:5140949-5140968 | Msa0665560:intron | 35.0% |
| CTAGATGACCCAATTCTAAT+AGG | + | chr4_4:5140975-5140994 | None:intergenic | 35.0% | |
| !!! | TGTTAGGTGGGTGTTTTTTT+GGG | - | chr4_4:5141002-5141021 | Msa0665560:intron | 35.0% |
| ! | TTTGAGGTTCCTCATGTATA+CGG | - | chr4_4:5141032-5141051 | Msa0665560:intron | 35.0% |
| AAATCACTACCGTATACATG+AGG | + | chr4_4:5141044-5141063 | None:intergenic | 35.0% | |
| ! | ACGGTAGTGATTTTCATCTT+TGG | - | chr4_4:5141051-5141070 | Msa0665560:intron | 35.0% |
| ! | CGGTAGTGATTTTCATCTTT+GGG | - | chr4_4:5141052-5141071 | Msa0665560:intron | 35.0% |
| ATTGTAAGTCCTTAGGTTCA+GGG | + | chr4_4:5141214-5141233 | None:intergenic | 35.0% | |
| AATTGTAAGTCCTTAGGTTC+AGG | + | chr4_4:5141215-5141234 | None:intergenic | 35.0% | |
| CACTACAATTGTAAGTCCTT+AGG | + | chr4_4:5141221-5141240 | None:intergenic | 35.0% | |
| ATGTGTTGCAGAAAATGTTG+AGG | - | chr4_4:5141244-5141263 | Msa0665560:intron | 35.0% | |
| TGTGTTGCAGAAAATGTTGA+GGG | - | chr4_4:5141245-5141264 | Msa0665560:intron | 35.0% | |
| GTTTGAACATCTTATATGGC+AGG | + | chr4_4:5141326-5141345 | None:intergenic | 35.0% | |
| GTAGAAGTAACTCCAAATTG+AGG | - | chr4_4:5141436-5141455 | Msa0665560:intron | 35.0% | |
| !! | ATGGAGTATTGGTATGTGTT+TGG | - | chr4_4:5141582-5141601 | Msa0665560:intron | 35.0% |
| !! | TGGAGTATTGGTATGTGTTT+GGG | - | chr4_4:5141583-5141602 | Msa0665560:intron | 35.0% |
| AATTTGCACCACTAGAACTT+TGG | - | chr4_4:5141615-5141634 | Msa0665560:intron | 35.0% | |
| ATTTGCACCACTAGAACTTT+GGG | - | chr4_4:5141616-5141635 | Msa0665560:intron | 35.0% | |
| AGTCCAATGGTGTAGATTAA+AGG | - | chr4_4:5141686-5141705 | Msa0665560:intron | 35.0% | |
| CTACCTTTAATCTACACCAT+TGG | + | chr4_4:5141692-5141711 | None:intergenic | 35.0% | |
| CAATGGTGTAGATTAAAGGT+AGG | - | chr4_4:5141690-5141709 | Msa0665560:intron | 35.0% | |
| !!! | GGTTTTGTTGAATTGTTGCT+GGG | - | chr4_4:5141808-5141827 | Msa0665560:CDS | 35.0% |
| TGAATAGAGAAGAGGTTACA+AGG | - | chr4_4:5142091-5142110 | Msa0665560:intron | 35.0% | |
| ! | GTTTACATAGCACTTGTTAG+TGG | + | chr4_4:5142185-5142204 | None:intergenic | 35.0% |
| ! | CATTTTGAATCTTGGATCTG+AGG | - | chr4_4:5142310-5142329 | Msa0665560:intron | 35.0% |
| ! | ATCTAGAGCTGTCAATTTGA+TGG | - | chr4_4:5142339-5142358 | Msa0665560:intron | 35.0% |
| ! | TCTAGAGCTGTCAATTTGAT+GGG | - | chr4_4:5142340-5142359 | Msa0665560:CDS | 35.0% |
| !! | TAATGGGCTTAGCATATTTG+GGG | + | chr4_4:5142445-5142464 | None:intergenic | 35.0% |
| GGGGCCTATTGTTTATTTAA+TGG | + | chr4_4:5142462-5142481 | None:intergenic | 35.0% | |
| AAATAAACAATAGGCCCCAA+AGG | - | chr4_4:5142464-5142483 | Msa0665560:CDS | 35.0% | |
| AATAAACAATAGGCCCCAAA+GGG | - | chr4_4:5142465-5142484 | Msa0665560:CDS | 35.0% | |
| !!! | AGATTTTTAGTTGATGGCTG+TGG | - | chr4_4:5142530-5142549 | Msa0665560:CDS | 35.0% |
| CCACTGAGGTAGTTTAAACA+AGG | + | chr4_4:5139920-5139939 | None:intergenic | 40.0% | |
| ! | CCTTGTTTAAACTACCTCAG+TGG | - | chr4_4:5139917-5139936 | Msa0665560:CDS | 40.0% |
| AATGGATCACAACAGCTATC+AGG | + | chr4_4:5139956-5139975 | None:intergenic | 40.0% | |
| TGCAAGATGCTTATGTAGCT+TGG | - | chr4_4:5139997-5140016 | Msa0665560:intron | 40.0% | |
| ! | ATACTTGAGAGGCATGACAA+TGG | + | chr4_4:5140115-5140134 | None:intergenic | 40.0% |
| CAAGAACTCAGATAGCAACT+CGG | - | chr4_4:5140631-5140650 | Msa0665560:intron | 40.0% | |
| TTATCAGGGCCAACTAAACA+GGG | - | chr4_4:5140722-5140741 | Msa0665560:intron | 40.0% | |
| TTCCATCACCATCATTCCAT+CGG | - | chr4_4:5140888-5140907 | Msa0665560:intron | 40.0% | |
| CAAGACAACAGAAGAGGAAA+CGG | + | chr4_4:5140945-5140964 | None:intergenic | 40.0% | |
| !!! | GAATTGGGTCATCTAGCTTT+TGG | - | chr4_4:5140979-5140998 | Msa0665560:intron | 40.0% |
| !!! | GTCATCTAGCTTTTGGTGTT+AGG | - | chr4_4:5140986-5141005 | Msa0665560:intron | 40.0% |
| !!! | ATCTAGCTTTTGGTGTTAGG+TGG | - | chr4_4:5140989-5141008 | Msa0665560:intron | 40.0% |
| !!! | TCTAGCTTTTGGTGTTAGGT+GGG | - | chr4_4:5140990-5141009 | Msa0665560:intron | 40.0% |
| !!! | GTGTTAGGTGGGTGTTTTTT+TGG | - | chr4_4:5141001-5141020 | Msa0665560:intron | 40.0% |
| TCGGCTCTGTAATTGAAAAG+AGG | + | chr4_4:5141174-5141193 | None:intergenic | 40.0% | |
| GTGTTGCAGAAAATGTTGAG+GGG | - | chr4_4:5141246-5141265 | Msa0665560:intron | 40.0% | |
| TACTTCTACTTCCACTCGAA+AGG | + | chr4_4:5141425-5141444 | None:intergenic | 40.0% | |
| !! | GGAGTATTGGTATGTGTTTG+GGG | - | chr4_4:5141584-5141603 | Msa0665560:intron | 40.0% |
| AACATTCAATGGGTCCAAGT+TGG | + | chr4_4:5141643-5141662 | None:intergenic | 40.0% | |
| GAGGAATCAACTTGCATCTT+TGG | + | chr4_4:5141719-5141738 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGTTGAATTGTTGC+TGG | - | chr4_4:5141807-5141826 | Msa0665560:CDS | 40.0% |
| ! | TTGAATTGTTGCTGGGCTTT+TGG | - | chr4_4:5141815-5141834 | Msa0665560:CDS | 40.0% |
| ! | TGAATTGTTGCTGGGCTTTT+GGG | - | chr4_4:5141816-5141835 | Msa0665560:CDS | 40.0% |
| TCTGACTTCTTACAAGAGCA+AGG | + | chr4_4:5142045-5142064 | None:intergenic | 40.0% | |
| ATAGAGAAGAGGTTACAAGG+AGG | - | chr4_4:5142094-5142113 | Msa0665560:intron | 40.0% | |
| CTGTAACTGTAATGACACAG+AGG | + | chr4_4:5142132-5142151 | None:intergenic | 40.0% | |
| AAGTGCTATGTAAACTCAGC+TGG | - | chr4_4:5142190-5142209 | Msa0665560:intron | 40.0% | |
| !! | ACTGTGCTGACTCAAGTATA+TGG | - | chr4_4:5142224-5142243 | Msa0665560:intron | 40.0% |
| ! | ATGTTTTCACGACCAACAAC+TGG | - | chr4_4:5142268-5142287 | Msa0665560:intron | 40.0% |
| CTAGAGCTGTCAATTTGATG+GGG | - | chr4_4:5142341-5142360 | Msa0665560:CDS | 40.0% | |
| TTTAAGCCCCCTTAACATGT+GGG | + | chr4_4:5142387-5142406 | None:intergenic | 40.0% | |
| ! | TTTTAAGCCCCCTTAACATG+TGG | + | chr4_4:5142388-5142407 | None:intergenic | 40.0% |
| ! | ATTTGGGGCCTATGTGAAAT+GGG | + | chr4_4:5142430-5142449 | None:intergenic | 40.0% |
| ! | TATTTGGGGCCTATGTGAAA+TGG | + | chr4_4:5142431-5142450 | None:intergenic | 40.0% |
| !!! | GTGGATTTTTAGTCCCACTG+AGG | + | chr4_4:5139934-5139953 | None:intergenic | 45.0% |
| ACAAGACAAGCTGAGAAAGC+TGG | - | chr4_4:5140034-5140053 | Msa0665560:intron | 45.0% | |
| !! | CGTGTTATTTCAGATTCCCC+TGG | - | chr4_4:5140605-5140624 | Msa0665560:intron | 45.0% |
| TATCTGAGTTCTTGGAGCCA+GGG | + | chr4_4:5140625-5140644 | None:intergenic | 45.0% | |
| CGAGTTGCTATCTGAGTTCT+TGG | + | chr4_4:5140633-5140652 | None:intergenic | 45.0% | |
| CCAGGACATGTTCATCAACT+TGG | + | chr4_4:5140660-5140679 | None:intergenic | 45.0% | |
| !! | CCAAGTTGATGAACATGTCC+TGG | - | chr4_4:5140657-5140676 | Msa0665560:intron | 45.0% |
| GTTATCAGGGCCAACTAAAC+AGG | - | chr4_4:5140721-5140740 | Msa0665560:intron | 45.0% | |
| TGAGCTACTTGCATACCCTA+AGG | + | chr4_4:5140753-5140772 | None:intergenic | 45.0% | |
| AGGGTATGCAAGTAGCTCAA+TGG | - | chr4_4:5140754-5140773 | Msa0665560:intron | 45.0% | |
| AGGAAAGTCCGATGGAATGA+TGG | + | chr4_4:5140899-5140918 | None:intergenic | 45.0% | |
| !!! | TAGGTGGGTGTTTTTTTGGG+AGG | - | chr4_4:5141005-5141024 | Msa0665560:intron | 45.0% |
| !!! | AGGTGGGTGTTTTTTTGGGA+GGG | - | chr4_4:5141006-5141025 | Msa0665560:intron | 45.0% |
| !!! | TTTTTTGGGAGGGTGGTTTG+AGG | - | chr4_4:5141016-5141035 | Msa0665560:intron | 45.0% |
| ATCAGCTAGATCCTTTCGAG+TGG | - | chr4_4:5141411-5141430 | Msa0665560:intron | 45.0% | |
| AGTACGGATCATATGCCAAG+TGG | - | chr4_4:5141530-5141549 | Msa0665560:intron | 45.0% | |
| GCTAAGAATCTTGAGCCACT+TGG | + | chr4_4:5141548-5141567 | None:intergenic | 45.0% | |
| ! | AGTTGGACCCAAAGTTCTAG+TGG | + | chr4_4:5141626-5141645 | None:intergenic | 45.0% |
| CTAGAACTTTGGGTCCAACT+TGG | - | chr4_4:5141626-5141645 | Msa0665560:intron | 45.0% | |
| ACTACATGTGAGCATGAGAG+AGG | + | chr4_4:5141738-5141757 | None:intergenic | 45.0% | |
| CTCTCATGCTCACATGTAGT+TGG | - | chr4_4:5141738-5141757 | Msa0665560:CDS | 45.0% | |
| ! | GAATTGTTGCTGGGCTTTTG+GGG | - | chr4_4:5141817-5141836 | Msa0665560:CDS | 45.0% |
| ! | AATTGTTGCTGGGCTTTTGG+GGG | - | chr4_4:5141818-5141837 | Msa0665560:CDS | 45.0% |
| CAGATCCAATGTCCAGTTGT+TGG | + | chr4_4:5142283-5142302 | None:intergenic | 45.0% | |
| ACAACTGGACATTGGATCTG+TGG | - | chr4_4:5142283-5142302 | Msa0665560:intron | 45.0% | |
| TTGATGGGGCTGCAACATTT+AGG | - | chr4_4:5142355-5142374 | Msa0665560:CDS | 45.0% | |
| AAACAGGCCCCATTTCACAT+AGG | - | chr4_4:5142419-5142438 | Msa0665560:CDS | 45.0% | |
| ! | TTTGGGGCCTATGTGAAATG+GGG | + | chr4_4:5142429-5142448 | None:intergenic | 45.0% |
| ! | ATTGGGGCTTTTAGCCCTTT+GGG | + | chr4_4:5142482-5142501 | None:intergenic | 45.0% |
| ! | AATTGGGGCTTTTAGCCCTT+TGG | + | chr4_4:5142483-5142502 | None:intergenic | 45.0% |
| !! | AAAACTTAAAAAAAAAATTA+GGG | + | chr4_4:5140186-5140205 | None:intergenic | 5.0% |
| !! | TAAAACTTAAAAAAAAAATT+AGG | + | chr4_4:5140187-5140206 | None:intergenic | 5.0% |
| GGATCACAACAGCTATCAGG+TGG | + | chr4_4:5139953-5139972 | None:intergenic | 50.0% | |
| AGTGATGCTCAGAGTTTGCC+TGG | - | chr4_4:5140067-5140086 | Msa0665560:intron | 50.0% | |
| GTGATGCTCAGAGTTTGCCT+GGG | - | chr4_4:5140068-5140087 | Msa0665560:intron | 50.0% | |
| ATCTGAGTTCTTGGAGCCAG+GGG | + | chr4_4:5140624-5140643 | None:intergenic | 50.0% | |
| CTATCTGAGTTCTTGGAGCC+AGG | + | chr4_4:5140626-5140645 | None:intergenic | 50.0% | |
| AAGGTCCAGCCCTGTTTAGT+TGG | + | chr4_4:5140734-5140753 | None:intergenic | 50.0% | |
| ACTAAACAGGGCTGGACCTT+AGG | - | chr4_4:5140734-5140753 | Msa0665560:intron | 50.0% | |
| CTAAACAGGGCTGGACCTTA+GGG | - | chr4_4:5140735-5140754 | Msa0665560:intron | 50.0% | |
| TGCAAGTAGCTCAATGGAGC+CGG | - | chr4_4:5140760-5140779 | Msa0665560:intron | 50.0% | |
| GACTCATATCTTGGGAGACC+CGG | + | chr4_4:5140782-5140801 | None:intergenic | 50.0% | |
| GTACAGAGAGAAGGAGAGGA+AGG | + | chr4_4:5140865-5140884 | None:intergenic | 50.0% | |
| ATGGAACGCGTACAGAGAGA+AGG | + | chr4_4:5140874-5140893 | None:intergenic | 50.0% | |
| ! | GTCCGATGGAATGATGGTGA+TGG | + | chr4_4:5140893-5140912 | None:intergenic | 50.0% |
| !!! | TGGGTGTTTTTTTGGGAGGG+TGG | - | chr4_4:5141009-5141028 | Msa0665560:intron | 50.0% |
| ATTCGTAGGCCCTGAACCTA+AGG | - | chr4_4:5141202-5141221 | Msa0665560:intron | 50.0% | |
| CACGACCAACAACTGGACAT+TGG | - | chr4_4:5142275-5142294 | Msa0665560:intron | 50.0% | |
| ! | TTGGGGCTTTTAGCCCTTTG+GGG | + | chr4_4:5142481-5142500 | None:intergenic | 50.0% |
| CAGAGTTTGCCTGGGAGATG+TGG | - | chr4_4:5140076-5140095 | Msa0665560:intron | 55.0% | |
| ACATGCTGACCACATCTCCC+AGG | + | chr4_4:5140088-5140107 | None:intergenic | 55.0% | |
| GCAAGTAGCTCAATGGAGCC+GGG | - | chr4_4:5140761-5140780 | Msa0665560:intron | 55.0% | |
| ACGCGTACAGAGAGAAGGAG+AGG | + | chr4_4:5140869-5140888 | None:intergenic | 55.0% | |
| CAATTACAGAGCCGAGCCTC+CGG | - | chr4_4:5141179-5141198 | Msa0665560:intron | 55.0% | |
| AGGTTCAGGGCCTACGAATC+CGG | + | chr4_4:5141201-5141220 | None:intergenic | 55.0% | |
| TGATGGCTGTGGTCAACACC+TGG | - | chr4_4:5142541-5142560 | Msa0665560:CDS | 55.0% | |
| CAGGGCCAACTAAACAGGGC+TGG | - | chr4_4:5140726-5140745 | Msa0665560:intron | 60.0% | |
| TTCAGGGCCTACGAATCCGG+AGG | + | chr4_4:5141198-5141217 | None:intergenic | 60.0% | |
| AGGCCCCAGCCCACATGTTA+AGG | - | chr4_4:5142375-5142394 | Msa0665560:CDS | 60.0% | |
| GGCCCCAGCCCACATGTTAA+GGG | - | chr4_4:5142376-5142395 | Msa0665560:CDS | 60.0% | |
| GCCCCAGCCCACATGTTAAG+GGG | - | chr4_4:5142377-5142396 | Msa0665560:CDS | 60.0% | |
| ! | CCCCCTTAACATGTGGGCTG+GGG | + | chr4_4:5142381-5142400 | None:intergenic | 60.0% |
| CCCCAGCCCACATGTTAAGG+GGG | - | chr4_4:5142378-5142397 | Msa0665560:CDS | 60.0% | |
| GCCCCCTTAACATGTGGGCT+GGG | + | chr4_4:5142382-5142401 | None:intergenic | 60.0% | |
| AGCCCCCTTAACATGTGGGC+TGG | + | chr4_4:5142383-5142402 | None:intergenic | 60.0% | |
| GGTCAACACCTGGTCAACGC+CGG | - | chr4_4:5142551-5142570 | Msa0665560:CDS | 60.0% | |
| AGCCGAGCCTCCGGATTCGT+AGG | - | chr4_4:5141188-5141207 | Msa0665560:intron | 65.0% | |
| GGCCTACGAATCCGGAGGCT+CGG | + | chr4_4:5141193-5141212 | None:intergenic | 65.0% | |
| CGCCAGATCACAGGCTGCTC+CGG | + | chr4_4:5142573-5142592 | None:intergenic | 65.0% | |
| CGGAGCAGCCTGTGATCTGG+CGG | - | chr4_4:5142571-5142590 | Msa0665560:CDS | 65.0% | |
| AGCAGCCTGTGATCTGGCGG+CGG | - | chr4_4:5142574-5142593 | Msa0665560:CDS | 65.0% | |
| GGCGGTGCTCCGGCAATTCA+CGG | - | chr4_4:5142592-5142611 | Msa0665560:CDS | 65.0% | |
| GGTGCTCCGGCAATTCACGG+CGG | - | chr4_4:5142595-5142614 | Msa0665560:CDS | 65.0% | |
| !! | AAAACTCGCCGGAGCACCGC+CGG | + | chr4_4:5142632-5142651 | None:intergenic | 65.0% |
| !! | AGGCTGCTCCGGCGTTGACC+AGG | + | chr4_4:5142562-5142581 | None:intergenic | 70.0% |
| CGCCGGAGCAGCCTGTGATC+TGG | - | chr4_4:5142568-5142587 | Msa0665560:CDS | 70.0% | |
| ! | GAGCACCGCCGCCAGATCAC+AGG | + | chr4_4:5142582-5142601 | None:intergenic | 70.0% |
| GTGATCTGGCGGCGGTGCTC+CGG | - | chr4_4:5142582-5142601 | Msa0665560:CDS | 70.0% | |
| !! | GGAGCGCCGCCGTGAATTGC+CGG | + | chr4_4:5142604-5142623 | None:intergenic | 70.0% |
| GGCAATTCACGGCGGCGCTC+CGG | - | chr4_4:5142603-5142622 | Msa0665560:CDS | 70.0% | |
| TCCGGTCACCGGCGGTGCTC+CGG | - | chr4_4:5142621-5142640 | Msa0665560:CDS | 75.0% | |
| ! | CACGGCGGCGCTCCGGTCAC+CGG | - | chr4_4:5142610-5142629 | Msa0665560:CDS | 80.0% |
| !!! | GCCGGAGCACCGCCGGTGAC+CGG | + | chr4_4:5142625-5142644 | None:intergenic | 80.0% |
| ! | GGCGGCGCTCCGGTCACCGG+CGG | - | chr4_4:5142613-5142632 | Msa0665560:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5139812 | 5142658 | 5139812 | ID=Msa0665560;Name=Msa0665560 |
| chr4_4 | mRNA | 5139812 | 5142658 | 5139812 | ID=Msa0665560-mRNA-1;Parent=Msa0665560;Name=Msa0665560-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.66|1|1|3|0|194 |
| chr4_4 | exon | 5142340 | 5142658 | 5142340 | ID=Msa0665560-mRNA-1:exon:1701;Parent=Msa0665560-mRNA-1 |
| chr4_4 | exon | 5141714 | 5141852 | 5141714 | ID=Msa0665560-mRNA-1:exon:1700;Parent=Msa0665560-mRNA-1 |
| chr4_4 | exon | 5139812 | 5139938 | 5139812 | ID=Msa0665560-mRNA-1:exon:1699;Parent=Msa0665560-mRNA-1 |
| chr4_4 | CDS | 5142340 | 5142658 | 5142340 | ID=Msa0665560-mRNA-1:cds;Parent=Msa0665560-mRNA-1 |
| chr4_4 | CDS | 5141714 | 5141852 | 5141714 | ID=Msa0665560-mRNA-1:cds;Parent=Msa0665560-mRNA-1 |
| chr4_4 | CDS | 5139812 | 5139938 | 5139812 | ID=Msa0665560-mRNA-1:cds;Parent=Msa0665560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
