Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012800 | XP_013447911.1 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012800 | sp|Q94CD1|HHT1_ARATH | 73.441 | 433 | 109 | 4 | 11 | 437 | 25 | 457 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012800 | A0A072TYM0 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005380 | Msa1012800 | 0.811735 | 6.035292e-51 | -8.615850e-47 |
| Msa0011840 | Msa1012800 | 0.848525 | 5.797021e-60 | -8.615850e-47 |
| Msa0016310 | Msa1012800 | 0.868532 | 6.087012e-66 | -8.615850e-47 |
| Msa0028620 | Msa1012800 | 0.804807 | 1.809076e-49 | -8.615850e-47 |
| Msa0030700 | Msa1012800 | 0.802656 | 5.059686e-49 | -8.615850e-47 |
| Msa0053860 | Msa1012800 | 0.832851 | 7.465114e-56 | -8.615850e-47 |
| Msa0060670 | Msa1012800 | 0.827809 | 1.274637e-54 | -8.615850e-47 |
| Msa0076290 | Msa1012800 | 0.801344 | 9.411166e-49 | -8.615850e-47 |
| Msa0076350 | Msa1012800 | 0.808736 | 2.675450e-50 | -8.615850e-47 |
| Msa0083340 | Msa1012800 | 0.856147 | 3.916279e-62 | -8.615850e-47 |
| Msa0099700 | Msa1012800 | 0.811753 | 5.979854e-51 | -8.615850e-47 |
| Msa0105410 | Msa1012800 | 0.849550 | 3.009829e-60 | -8.615850e-47 |
| Msa0106620 | Msa1012800 | 0.813472 | 2.515705e-51 | -8.615850e-47 |
| Msa0106710 | Msa1012800 | 0.806283 | 8.866432e-50 | -8.615850e-47 |
| Msa0605370 | Msa1012800 | 0.812337 | 4.460370e-51 | -8.615850e-47 |
| Msa0608190 | Msa1012800 | 0.801220 | 9.978415e-49 | -8.615850e-47 |
| Msa0612350 | Msa1012800 | 0.854019 | 1.626780e-61 | -8.615850e-47 |
| Msa0619050 | Msa1012800 | 0.812119 | 4.975983e-51 | -8.615850e-47 |
| Msa0626270 | Msa1012800 | 0.804461 | 2.136846e-49 | -8.615850e-47 |
| Msa0626460 | Msa1012800 | 0.817114 | 3.900082e-52 | -8.615850e-47 |
| Msa0646240 | Msa1012800 | 0.820074 | 8.313707e-53 | -8.615850e-47 |
| Msa0648510 | Msa1012800 | 0.814010 | 1.914769e-51 | -8.615850e-47 |
| Msa0663270 | Msa1012800 | 0.815068 | 1.116985e-51 | -8.615850e-47 |
| Msa0664090 | Msa1012800 | 0.808163 | 3.544196e-50 | -8.615850e-47 |
| Msa0664540 | Msa1012800 | 0.841562 | 4.408355e-58 | -8.615850e-47 |
| Msa0665560 | Msa1012800 | 0.814198 | 1.740349e-51 | -8.615850e-47 |
| Msa0686000 | Msa1012800 | 0.800444 | 1.436854e-48 | -8.615850e-47 |
| Msa0687580 | Msa1012800 | 0.848031 | 7.938196e-60 | -8.615850e-47 |
| Msa0693330 | Msa1012800 | 0.800551 | 1.366723e-48 | -8.615850e-47 |
| Msa0702410 | Msa1012800 | 0.808752 | 2.653321e-50 | -8.615850e-47 |
| Msa0702720 | Msa1012800 | 0.833992 | 3.877004e-56 | -8.615850e-47 |
| Msa0705580 | Msa1012800 | 0.800020 | 1.752963e-48 | -8.615850e-47 |
| Msa0708310 | Msa1012800 | 0.817818 | 2.706657e-52 | -8.615850e-47 |
| Msa0709120 | Msa1012800 | 0.807277 | 5.466755e-50 | -8.615850e-47 |
| Msa0748670 | Msa1012800 | 0.826595 | 2.489135e-54 | -8.615850e-47 |
| Msa0759490 | Msa1012800 | 0.804772 | 1.839904e-49 | -8.615850e-47 |
| Msa0806840 | Msa1012800 | 0.819793 | 9.636637e-53 | -8.615850e-47 |
| Msa0810330 | Msa1012800 | 0.836179 | 1.089069e-56 | -8.615850e-47 |
| Msa0829650 | Msa1012800 | 0.805602 | 1.233368e-49 | -8.615850e-47 |
| Msa0833530 | Msa1012800 | 0.816779 | 4.637910e-52 | -8.615850e-47 |
| Msa0124320 | Msa1012800 | 0.817093 | 3.943883e-52 | -8.615850e-47 |
| Msa0129700 | Msa1012800 | 0.867432 | 1.375088e-65 | -8.615850e-47 |
| Msa0139670 | Msa1012800 | 0.806856 | 6.713190e-50 | -8.615850e-47 |
| Msa0148320 | Msa1012800 | 0.811294 | 7.524813e-51 | -8.615850e-47 |
| Msa0187540 | Msa1012800 | 0.803078 | 4.138165e-49 | -8.615850e-47 |
| Msa0200020 | Msa1012800 | 0.810603 | 1.061581e-50 | -8.615850e-47 |
| Msa0210610 | Msa1012800 | 0.819878 | 9.217578e-53 | -8.615850e-47 |
| Msa0219340 | Msa1012800 | 0.816499 | 5.358981e-52 | -8.615850e-47 |
| Msa0226310 | Msa1012800 | 0.847962 | 8.296201e-60 | -8.615850e-47 |
| Msa0234090 | Msa1012800 | 0.830060 | 3.632504e-55 | -8.615850e-47 |
| Msa0402530 | Msa1012800 | 0.837417 | 5.261829e-57 | -8.615850e-47 |
| Msa0432160 | Msa1012800 | 0.800253 | 1.572141e-48 | -8.615850e-47 |
| Msa0448950 | Msa1012800 | 0.825550 | 4.409564e-54 | -8.615850e-47 |
| Msa0450400 | Msa1012800 | -0.803130 | 4.036850e-49 | -8.615850e-47 |
| Msa0470880 | Msa1012800 | 0.803536 | 3.327414e-49 | -8.615850e-47 |
| Msa0476680 | Msa1012800 | 0.806306 | 8.768686e-50 | -8.615850e-47 |
| Msa0481630 | Msa1012800 | 0.807394 | 5.163839e-50 | -8.615850e-47 |
| Msa0999680 | Msa1012800 | 0.808861 | 2.515727e-50 | -8.615850e-47 |
| Msa1012710 | Msa1012800 | 0.898319 | 5.960274e-77 | -8.615850e-47 |
| Msa1012800 | Msa1026480 | 0.826289 | 2.943133e-54 | -8.615850e-47 |
| Msa1012800 | Msa1028560 | 0.822802 | 1.949298e-53 | -8.615850e-47 |
| Msa1012800 | Msa1030810 | 0.807792 | 4.251822e-50 | -8.615850e-47 |
| Msa1012800 | Msa1054250 | 0.885958 | 5.185941e-72 | -8.615850e-47 |
| Msa1012800 | Msa1069890 | 0.813764 | 2.170231e-51 | -8.615850e-47 |
| Msa1012800 | Msa1089450 | 0.827050 | 1.937995e-54 | -8.615850e-47 |
| Msa1012800 | Msa1094410 | 0.911984 | 3.272996e-83 | -8.615850e-47 |
| Msa1012800 | Msa1129330 | 0.826552 | 2.548019e-54 | -8.615850e-47 |
| Msa1012800 | Msa1131270 | 0.895020 | 1.423802e-75 | -8.615850e-47 |
| Msa1012800 | Msa1132470 | 0.815454 | 9.168864e-52 | -8.615850e-47 |
| Msa1012800 | Msa1159170 | 0.804651 | 1.949878e-49 | -8.615850e-47 |
| Msa1012800 | Msa1191180 | 0.826589 | 2.497135e-54 | -8.615850e-47 |
| Msa1012800 | Msa1202800 | 0.807684 | 4.481562e-50 | -8.615850e-47 |
| Msa1012800 | Msa1203440 | 0.879898 | 8.553368e-70 | -8.615850e-47 |
| Msa1012800 | Msa1212050 | 0.806690 | 7.278363e-50 | -8.615850e-47 |
| Msa1012800 | Msa1212130 | 0.812926 | 3.315944e-51 | -8.615850e-47 |
| Msa1012800 | Msa1225860 | -0.800027 | 1.747605e-48 | -8.615850e-47 |
| Msa1012800 | Msa1238170 | 0.802836 | 4.643315e-49 | -8.615850e-47 |
| Msa1012800 | Msa1238600 | 0.820011 | 8.592626e-53 | -8.615850e-47 |
| Msa1012800 | Msa1244500 | 0.822254 | 2.613395e-53 | -8.615850e-47 |
| Msa1012800 | Msa1255210 | 0.829637 | 4.604476e-55 | -8.615850e-47 |
| Msa1012800 | Msa1255690 | 0.847789 | 9.256290e-60 | -8.615850e-47 |
| Msa1012800 | Msa1259860 | 0.816488 | 5.388110e-52 | -8.615850e-47 |
| Msa1012800 | Msa1271130 | 0.814475 | 1.511873e-51 | -8.615850e-47 |
| Msa1012800 | Msa1285550 | 0.816210 | 6.219977e-52 | -8.615850e-47 |
| Msa1012800 | Msa1295650 | 0.826873 | 2.135910e-54 | -8.615850e-47 |
| Msa1012800 | Msa1325410 | -0.810541 | 1.095054e-50 | -8.615850e-47 |
| Msa1012800 | Msa1325920 | 0.810969 | 8.849541e-51 | -8.615850e-47 |
| Msa1012800 | Msa1327870 | 0.810545 | 1.092982e-50 | -8.615850e-47 |
| Msa1012800 | Msa1340200 | 0.806672 | 7.341147e-50 | -8.615850e-47 |
| Msa1012800 | Msa1341840 | 0.847708 | 9.745989e-60 | -8.615850e-47 |
| Msa1012800 | Msa1353890 | 0.830720 | 2.505679e-55 | -8.615850e-47 |
| Msa1012800 | Msa1369920 | -0.805366 | 1.382282e-49 | -8.615850e-47 |
| Msa1012800 | Msa1386890 | 0.813097 | 3.041910e-51 | -8.615850e-47 |
| Msa1012800 | Msa1390290 | 0.833151 | 6.289232e-56 | -8.615850e-47 |
| Msa1012800 | Msa1418240 | 0.800995 | 1.109312e-48 | -8.615850e-47 |
| Msa1012800 | Msa1439270 | 0.816026 | 6.837869e-52 | -8.615850e-47 |
| Msa1012800 | Msa1442920 | 0.813449 | 2.544971e-51 | -8.615850e-47 |
| Msa1012800 | Msa1458680 | 0.801045 | 1.083765e-48 | -8.615850e-47 |
| Msa1012800 | Msa1461370 | 0.830763 | 2.445434e-55 | -8.615850e-47 |
| Msa0240900 | Msa1012800 | 0.827857 | 1.240834e-54 | -8.615850e-47 |
| Msa0242530 | Msa1012800 | 0.810073 | 1.381424e-50 | -8.615850e-47 |
| Msa0251710 | Msa1012800 | 0.824691 | 7.036222e-54 | -8.615850e-47 |
| Msa0256920 | Msa1012800 | 0.806054 | 9.909690e-50 | -8.615850e-47 |
| Msa0267790 | Msa1012800 | 0.829695 | 4.457769e-55 | -8.615850e-47 |
| Msa0271540 | Msa1012800 | 0.814256 | 1.689784e-51 | -8.615850e-47 |
| Msa0279850 | Msa1012800 | 0.803646 | 3.156937e-49 | -8.615850e-47 |
| Msa0289960 | Msa1012800 | 0.807945 | 3.945030e-50 | -8.615850e-47 |
| Msa0297910 | Msa1012800 | 0.826926 | 2.075087e-54 | -8.615850e-47 |
| Msa0304570 | Msa1012800 | 0.864150 | 1.495993e-64 | -8.615850e-47 |
| Msa0304680 | Msa1012800 | 0.856544 | 2.993592e-62 | -8.615850e-47 |
| Msa0317970 | Msa1012800 | 0.826824 | 2.194660e-54 | -8.615850e-47 |
| Msa0322900 | Msa1012800 | 0.806338 | 8.634692e-50 | -8.615850e-47 |
| Msa0327760 | Msa1012800 | 0.809547 | 1.792508e-50 | -8.615850e-47 |
| Msa0485240 | Msa1012800 | 0.803344 | 3.646679e-49 | -8.615850e-47 |
| Msa0497190 | Msa1012800 | 0.825261 | 5.163286e-54 | -8.615850e-47 |
| Msa0521010 | Msa1012800 | 0.807595 | 4.681834e-50 | -8.615850e-47 |
| Msa0526680 | Msa1012800 | 0.803116 | 4.064969e-49 | -8.615850e-47 |
| Msa0526730 | Msa1012800 | 0.809063 | 2.277470e-50 | -8.615850e-47 |
| Msa0527820 | Msa1012800 | 0.818764 | 1.652890e-52 | -8.615850e-47 |
| Msa0549890 | Msa1012800 | 0.803106 | 4.083117e-49 | -8.615850e-47 |
| Msa0565170 | Msa1012800 | 0.800913 | 1.152830e-48 | -8.615850e-47 |
| Msa0568800 | Msa1012800 | 0.818112 | 2.323320e-52 | -8.615850e-47 |
| Msa0855870 | Msa1012800 | 0.806313 | 8.741724e-50 | -8.615850e-47 |
| Msa0869280 | Msa1012800 | 0.810655 | 1.034513e-50 | -8.615850e-47 |
| Msa0870510 | Msa1012800 | 0.800438 | 1.441206e-48 | -8.615850e-47 |
| Msa0871720 | Msa1012800 | 0.800860 | 1.182363e-48 | -8.615850e-47 |
| Msa0876940 | Msa1012800 | 0.817379 | 3.400865e-52 | -8.615850e-47 |
| Msa0881960 | Msa1012800 | 0.819532 | 1.105189e-52 | -8.615850e-47 |
| Msa0931620 | Msa1012800 | 0.812038 | 5.183466e-51 | -8.615850e-47 |
| Msa0933760 | Msa1012800 | 0.828462 | 8.869405e-55 | -8.615850e-47 |
| Msa0934140 | Msa1012800 | 0.821621 | 3.663961e-53 | -8.615850e-47 |
| Msa0965290 | Msa1012800 | 0.808122 | 3.617415e-50 | -8.615850e-47 |
| Msa0971650 | Msa1012800 | 0.808288 | 3.333838e-50 | -8.615850e-47 |
| Msa0979180 | Msa1012800 | 0.838134 | 3.443281e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012800 | MtrunA17_Chr7g0224391 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 899 |
| Msa1012800 | MtrunA17_Chr3g0132001 | 66.826 | 419 | 136 | 2 | 20 | 437 | 18 | 434 | 0.0 | 588 |
| Msa1012800 | MtrunA17_Chr8g0386141 | 61.682 | 428 | 159 | 3 | 12 | 437 | 4 | 428 | 0.0 | 540 |
| Msa1012800 | MtrunA17_Chr4g0001861 | 34.483 | 435 | 266 | 7 | 13 | 435 | 3 | 430 | 6.48e-85 | 266 |
| Msa1012800 | MtrunA17_Chr2g0334001 | 34.247 | 438 | 262 | 9 | 13 | 435 | 3 | 429 | 1.63e-82 | 260 |
| Msa1012800 | MtrunA17_Chr8g0371821 | 34.895 | 427 | 254 | 10 | 23 | 435 | 10 | 426 | 2.63e-79 | 252 |
| Msa1012800 | MtrunA17_Chr5g0433641 | 35.917 | 387 | 234 | 8 | 20 | 397 | 14 | 395 | 2.58e-77 | 248 |
| Msa1012800 | MtrunA17_Chr1g0191081 | 34.419 | 430 | 255 | 11 | 19 | 431 | 21 | 440 | 1.31e-75 | 243 |
| Msa1012800 | MtrunA17_Chr1g0165671 | 34.375 | 384 | 240 | 7 | 19 | 396 | 30 | 407 | 7.39e-75 | 241 |
| Msa1012800 | MtrunA17_Chr2g0306321 | 36.364 | 396 | 228 | 15 | 36 | 412 | 41 | 431 | 3.85e-74 | 239 |
| Msa1012800 | MtrunA17_Chr7g0273721 | 34.367 | 387 | 239 | 8 | 19 | 395 | 14 | 395 | 8.23e-73 | 236 |
| Msa1012800 | MtrunA17_Chr1g0165661 | 33.333 | 423 | 264 | 10 | 20 | 429 | 13 | 430 | 1.78e-72 | 235 |
| Msa1012800 | MtrunA17_Chr1g0165681 | 33.596 | 381 | 241 | 8 | 23 | 396 | 16 | 391 | 2.39e-71 | 232 |
| Msa1012800 | MtrunA17_Chr7g0273761 | 32.870 | 432 | 264 | 10 | 20 | 433 | 386 | 809 | 4.48e-70 | 237 |
| Msa1012800 | MtrunA17_Chr7g0273761 | 30.612 | 294 | 190 | 6 | 150 | 433 | 32 | 321 | 4.59e-39 | 150 |
| Msa1012800 | MtrunA17_Chr7g0273781 | 32.637 | 383 | 247 | 5 | 20 | 395 | 47 | 425 | 3.45e-68 | 224 |
| Msa1012800 | MtrunA17_Chr7g0273731 | 33.073 | 384 | 246 | 6 | 19 | 395 | 96 | 475 | 1.36e-67 | 224 |
| Msa1012800 | MtrunA17_Chr7g0273791 | 31.854 | 383 | 250 | 6 | 20 | 395 | 14 | 392 | 5.08e-66 | 219 |
| Msa1012800 | MtrunA17_Chr3g0141851 | 32.715 | 431 | 259 | 13 | 22 | 436 | 18 | 433 | 2.64e-65 | 216 |
| Msa1012800 | MtrunA17_Chr2g0311401 | 36.455 | 299 | 170 | 5 | 150 | 434 | 6 | 298 | 2.73e-64 | 209 |
| Msa1012800 | MtrunA17_Chr3g0087401 | 30.543 | 442 | 267 | 12 | 24 | 432 | 10 | 444 | 2.69e-63 | 211 |
| Msa1012800 | MtrunA17_Chr7g0235531 | 30.626 | 431 | 281 | 8 | 20 | 435 | 8 | 435 | 5.29e-61 | 204 |
| Msa1012800 | MtrunA17_Chr4g0027071 | 32.143 | 448 | 267 | 15 | 18 | 436 | 14 | 453 | 1.17e-60 | 204 |
| Msa1012800 | MtrunA17_Chr7g0252731 | 29.976 | 417 | 258 | 10 | 22 | 426 | 23 | 417 | 1.40e-60 | 203 |
| Msa1012800 | MtrunA17_Chr4g0072041 | 33.000 | 400 | 237 | 9 | 24 | 396 | 22 | 417 | 8.56e-59 | 199 |
| Msa1012800 | MtrunA17_Chr1g0165711 | 32.021 | 381 | 212 | 10 | 21 | 396 | 14 | 352 | 8.50e-56 | 190 |
| Msa1012800 | MtrunA17_Chr3g0113821 | 31.481 | 432 | 274 | 11 | 20 | 436 | 9 | 433 | 1.51e-55 | 190 |
| Msa1012800 | MtrunA17_Chr4g0054081 | 29.777 | 403 | 244 | 9 | 24 | 395 | 17 | 411 | 4.88e-49 | 173 |
| Msa1012800 | MtrunA17_Chr7g0253541 | 30.310 | 419 | 240 | 16 | 13 | 391 | 2 | 408 | 9.83e-47 | 167 |
| Msa1012800 | MtrunA17_Chr2g0283361 | 29.540 | 413 | 272 | 12 | 39 | 437 | 29 | 436 | 4.63e-45 | 162 |
| Msa1012800 | MtrunA17_Chr3g0106691 | 32.250 | 400 | 227 | 15 | 23 | 392 | 63 | 448 | 2.08e-43 | 159 |
| Msa1012800 | MtrunA17_Chr6g0470591 | 31.635 | 373 | 229 | 12 | 38 | 392 | 42 | 406 | 6.28e-43 | 157 |
| Msa1012800 | MtrunA17_Chr7g0253531 | 28.646 | 384 | 232 | 10 | 51 | 396 | 37 | 416 | 1.81e-39 | 147 |
| Msa1012800 | MtrunA17_Chr3g0106721 | 34.416 | 308 | 184 | 11 | 65 | 360 | 65 | 366 | 5.90e-39 | 146 |
| Msa1012800 | MtrunA17_Chr7g0253501 | 28.283 | 396 | 218 | 12 | 51 | 396 | 37 | 416 | 6.52e-39 | 146 |
| Msa1012800 | MtrunA17_Chr3g0106661 | 28.222 | 450 | 283 | 16 | 23 | 436 | 17 | 462 | 3.07e-38 | 144 |
| Msa1012800 | MtrunA17_Chr7g0270771 | 35.000 | 280 | 150 | 10 | 23 | 294 | 12 | 267 | 7.14e-38 | 138 |
| Msa1012800 | MtrunA17_Chr3g0106761 | 32.143 | 336 | 187 | 15 | 82 | 392 | 28 | 347 | 6.18e-36 | 136 |
| Msa1012800 | MtrunA17_Chr3g0123061 | 26.866 | 402 | 247 | 15 | 23 | 408 | 12 | 382 | 1.54e-34 | 133 |
| Msa1012800 | MtrunA17_Chr3g0106741 | 32.440 | 336 | 186 | 17 | 82 | 392 | 59 | 378 | 4.86e-34 | 132 |
| Msa1012800 | MtrunA17_Chr5g0442691 | 27.877 | 391 | 240 | 13 | 37 | 393 | 54 | 436 | 7.41e-33 | 129 |
| Msa1012800 | MtrunA17_Chr5g0442701 | 27.621 | 391 | 241 | 13 | 37 | 393 | 31 | 413 | 3.97e-32 | 127 |
| Msa1012800 | MtrunA17_Chr6g0471971 | 31.496 | 254 | 131 | 9 | 165 | 408 | 1 | 221 | 4.11e-32 | 121 |
| Msa1012800 | MtrunA17_Chr7g0252771 | 27.344 | 256 | 172 | 4 | 189 | 435 | 1 | 251 | 1.63e-30 | 118 |
| Msa1012800 | MtrunA17_Chr3g0134091 | 29.841 | 315 | 195 | 10 | 56 | 356 | 56 | 358 | 1.52e-29 | 119 |
| Msa1012800 | MtrunA17_Chr3g0134071 | 26.847 | 406 | 252 | 16 | 55 | 432 | 57 | 445 | 1.90e-27 | 114 |
| Msa1012800 | MtrunA17_Chr3g0106711 | 37.566 | 189 | 104 | 5 | 23 | 199 | 17 | 203 | 2.74e-27 | 109 |
| Msa1012800 | MtrunA17_Chr4g0053061 | 26.733 | 404 | 249 | 17 | 58 | 429 | 77 | 465 | 5.43e-27 | 112 |
| Msa1012800 | MtrunA17_Chr6g0471381 | 30.653 | 199 | 128 | 6 | 201 | 395 | 7 | 199 | 1.77e-26 | 107 |
| Msa1012800 | MtrunA17_Chr5g0442721 | 25.118 | 422 | 269 | 15 | 9 | 393 | 4 | 415 | 1.87e-26 | 111 |
| Msa1012800 | MtrunA17_Chr8g0359251 | 25.450 | 389 | 259 | 10 | 63 | 433 | 58 | 433 | 2.97e-26 | 110 |
| Msa1012800 | MtrunA17_Chr8g0374911 | 25.750 | 400 | 258 | 16 | 58 | 429 | 70 | 458 | 5.24e-26 | 109 |
| Msa1012800 | MtrunA17_Chr3g0134121 | 28.338 | 367 | 227 | 13 | 14 | 356 | 5 | 359 | 5.65e-26 | 110 |
| Msa1012800 | MtrunA17_Chr4g0053111 | 26.485 | 404 | 255 | 14 | 54 | 429 | 46 | 435 | 7.18e-26 | 109 |
| Msa1012800 | MtrunA17_Chr3g0134041 | 24.814 | 403 | 261 | 12 | 55 | 432 | 53 | 438 | 1.29e-25 | 108 |
| Msa1012800 | MtrunA17_Chr3g0125001 | 25.897 | 390 | 266 | 12 | 63 | 437 | 50 | 431 | 2.85e-25 | 107 |
| Msa1012800 | MtrunA17_Chr3g0095731 | 25.455 | 385 | 240 | 12 | 45 | 394 | 41 | 413 | 5.18e-25 | 107 |
| Msa1012800 | MtrunA17_Chr3g0097841 | 32.212 | 208 | 125 | 3 | 244 | 435 | 33 | 240 | 7.31e-25 | 102 |
| Msa1012800 | MtrunA17_Chr8g0374641 | 26.799 | 403 | 245 | 19 | 58 | 429 | 49 | 432 | 1.07e-24 | 105 |
| Msa1012800 | MtrunA17_Chr4g0010331 | 25.788 | 349 | 229 | 11 | 63 | 392 | 50 | 387 | 1.17e-24 | 105 |
| Msa1012800 | MtrunA17_Chr4g0053081 | 25.823 | 395 | 249 | 16 | 61 | 429 | 57 | 433 | 1.50e-24 | 105 |
| Msa1012800 | MtrunA17_Chr4g0010361 | 25.897 | 390 | 256 | 14 | 63 | 429 | 50 | 429 | 1.97e-24 | 105 |
| Msa1012800 | MtrunA17_Chr4g0010311 | 26.873 | 387 | 245 | 13 | 68 | 429 | 55 | 428 | 2.08e-24 | 104 |
| Msa1012800 | MtrunA17_Chr4g0004691 | 29.143 | 175 | 120 | 2 | 14 | 188 | 3 | 173 | 2.91e-24 | 99.4 |
| Msa1012800 | MtrunA17_Chr3g0095721 | 25.130 | 386 | 244 | 12 | 45 | 394 | 41 | 417 | 3.15e-24 | 104 |
| Msa1012800 | MtrunA17_Chr4g0053091 | 25.562 | 356 | 211 | 11 | 61 | 392 | 60 | 385 | 1.59e-23 | 102 |
| Msa1012800 | MtrunA17_Chr7g0273741 | 36.296 | 135 | 83 | 2 | 20 | 151 | 14 | 148 | 1.63e-23 | 96.3 |
| Msa1012800 | MtrunA17_Chr5g0408911 | 25.124 | 402 | 259 | 15 | 37 | 415 | 41 | 423 | 6.48e-23 | 100 |
| Msa1012800 | MtrunA17_Chr6g0471371 | 38.065 | 155 | 83 | 4 | 19 | 169 | 12 | 157 | 6.97e-23 | 95.1 |
| Msa1012800 | MtrunA17_Chr4g0010121 | 25.628 | 398 | 255 | 14 | 58 | 429 | 89 | 471 | 8.46e-23 | 100 |
| Msa1012800 | MtrunA17_Chr1g0199561 | 24.368 | 435 | 277 | 15 | 13 | 413 | 1 | 417 | 1.35e-22 | 99.8 |
| Msa1012800 | MtrunA17_Chr8g0354371 | 26.393 | 341 | 232 | 10 | 63 | 392 | 59 | 391 | 1.76e-22 | 99.4 |
| Msa1012800 | MtrunA17_Chr3g0134061 | 24.171 | 422 | 269 | 15 | 14 | 395 | 4 | 414 | 1.83e-22 | 99.4 |
| Msa1012800 | MtrunA17_Chr3g0098961 | 37.705 | 122 | 73 | 2 | 20 | 138 | 17 | 138 | 2.54e-22 | 93.6 |
| Msa1012800 | MtrunA17_Chr7g0274021 | 25.824 | 364 | 241 | 11 | 12 | 362 | 5 | 352 | 3.45e-22 | 98.6 |
| Msa1012800 | MtrunA17_Chr6g0467861 | 26.625 | 477 | 284 | 23 | 13 | 437 | 45 | 507 | 9.74e-22 | 97.4 |
| Msa1012800 | MtrunA17_Chr7g0224131 | 24.479 | 384 | 265 | 12 | 63 | 429 | 50 | 425 | 2.88e-21 | 95.5 |
| Msa1012800 | MtrunA17_Chr8g0376901 | 25.122 | 410 | 249 | 16 | 13 | 392 | 1 | 382 | 2.97e-21 | 95.5 |
| Msa1012800 | MtrunA17_Chr8g0361781 | 23.724 | 392 | 263 | 13 | 20 | 392 | 12 | 386 | 2.98e-21 | 95.5 |
| Msa1012800 | MtrunA17_Chr4g0010351 | 29.242 | 277 | 170 | 11 | 68 | 327 | 55 | 322 | 5.53e-21 | 94.0 |
| Msa1012800 | MtrunA17_Chr5g0436621 | 23.316 | 386 | 228 | 11 | 67 | 393 | 60 | 436 | 7.97e-21 | 94.7 |
| Msa1012800 | MtrunA17_Chr3g0113181 | 24.251 | 367 | 223 | 11 | 68 | 392 | 66 | 419 | 1.44e-20 | 94.0 |
| Msa1012800 | MtrunA17_Chr8g0376891 | 22.667 | 450 | 289 | 16 | 13 | 432 | 1 | 421 | 3.20e-20 | 92.8 |
| Msa1012800 | MtrunA17_Chr4g0010381 | 25.707 | 389 | 246 | 16 | 68 | 429 | 55 | 427 | 3.95e-20 | 92.4 |
| Msa1012800 | MtrunA17_Chr5g0438701 | 21.995 | 441 | 297 | 14 | 13 | 432 | 1 | 415 | 1.95e-19 | 90.1 |
| Msa1012800 | MtrunA17_Chr8g0361771 | 25.313 | 399 | 262 | 15 | 15 | 392 | 3 | 386 | 2.50e-19 | 89.7 |
| Msa1012800 | MtrunA17_Chr1g0165741 | 34.815 | 135 | 85 | 2 | 20 | 151 | 13 | 147 | 3.05e-19 | 84.0 |
| Msa1012800 | MtrunA17_Chr3g0134101 | 27.097 | 310 | 194 | 9 | 56 | 356 | 74 | 360 | 3.38e-19 | 89.7 |
| Msa1012800 | MtrunA17_Chr3g0134111 | 24.619 | 394 | 255 | 14 | 25 | 390 | 19 | 398 | 1.28e-18 | 87.8 |
| Msa1012800 | MtrunA17_Chr7g0219331 | 24.432 | 352 | 234 | 10 | 68 | 391 | 157 | 504 | 1.40e-18 | 88.2 |
| Msa1012800 | MtrunA17_Chr7g0219291 | 23.833 | 407 | 260 | 14 | 68 | 435 | 416 | 811 | 8.30e-18 | 86.3 |
| Msa1012800 | MtrunA17_Chr2g0323481 | 23.056 | 360 | 237 | 11 | 68 | 392 | 62 | 416 | 9.46e-18 | 85.1 |
| Msa1012800 | MtrunA17_Chr7g0219241 | 23.671 | 414 | 259 | 16 | 67 | 435 | 68 | 469 | 1.06e-17 | 85.1 |
| Msa1012800 | MtrunA17_Chr4g0004701 | 26.702 | 191 | 119 | 5 | 265 | 435 | 49 | 238 | 1.20e-17 | 82.0 |
| Msa1012800 | MtrunA17_Chr7g0219301 | 25.000 | 352 | 232 | 10 | 68 | 391 | 64 | 411 | 2.06e-17 | 85.1 |
| Msa1012800 | MtrunA17_Chr2g0323421 | 24.650 | 357 | 234 | 9 | 68 | 392 | 111 | 464 | 8.23e-17 | 82.4 |
| Msa1012800 | MtrunA17_Chr7g0252761 | 32.374 | 139 | 91 | 3 | 20 | 156 | 20 | 157 | 4.28e-16 | 75.9 |
| Msa1012800 | MtrunA17_Chr8g0378151 | 29.609 | 179 | 123 | 2 | 24 | 201 | 20 | 196 | 1.65e-15 | 78.2 |
| Msa1012800 | MtrunA17_Chr3g0097851 | 38.202 | 89 | 55 | 0 | 265 | 353 | 26 | 114 | 3.30e-15 | 71.6 |
| Msa1012800 | MtrunA17_Chr2g0323511 | 24.064 | 374 | 238 | 14 | 67 | 399 | 74 | 442 | 1.05e-14 | 75.9 |
| Msa1012800 | MtrunA17_Chr7g0219181 | 22.837 | 416 | 263 | 15 | 67 | 435 | 67 | 471 | 1.11e-14 | 75.9 |
| Msa1012800 | MtrunA17_Chr6g0455341 | 24.286 | 350 | 232 | 12 | 68 | 391 | 70 | 412 | 1.77e-14 | 75.1 |
| Msa1012800 | MtrunA17_Chr1g0165731 | 28.319 | 113 | 76 | 3 | 165 | 276 | 1 | 109 | 1.94e-14 | 69.3 |
| Msa1012800 | MtrunA17_Chr6g0454761 | 22.006 | 309 | 214 | 9 | 150 | 435 | 634 | 938 | 9.34e-14 | 73.6 |
| Msa1012800 | MtrunA17_Chr6g0454761 | 23.134 | 268 | 172 | 8 | 150 | 391 | 147 | 406 | 5.74e-13 | 71.2 |
| Msa1012800 | MtrunA17_Chr7g0273701 | 33.028 | 109 | 70 | 2 | 292 | 397 | 1 | 109 | 1.41e-13 | 68.9 |
| Msa1012800 | MtrunA17_Chr2g0311411 | 31.447 | 159 | 95 | 5 | 13 | 170 | 3 | 148 | 1.66e-13 | 67.8 |
| Msa1012800 | MtrunA17_Chr8g0353421 | 34.906 | 106 | 66 | 2 | 21 | 123 | 14 | 119 | 2.88e-13 | 66.6 |
| Msa1012800 | MtrunA17_Chr2g0323471 | 21.569 | 357 | 240 | 10 | 67 | 391 | 81 | 429 | 6.83e-13 | 70.5 |
| Msa1012800 | MtrunA17_Chr6g0471891 | 26.061 | 165 | 92 | 5 | 234 | 396 | 1 | 137 | 1.12e-12 | 67.4 |
| Msa1012800 | MtrunA17_Chr1g0148851 | 22.189 | 338 | 212 | 12 | 48 | 359 | 39 | 351 | 3.71e-12 | 67.8 |
| Msa1012800 | MtrunA17_Chr8g0339641 | 22.520 | 373 | 242 | 11 | 67 | 397 | 61 | 428 | 4.72e-12 | 67.8 |
| Msa1012800 | MtrunA17_Chr2g0302471 | 28.947 | 152 | 97 | 5 | 15 | 165 | 4 | 145 | 5.87e-12 | 63.2 |
| Msa1012800 | MtrunA17_Chr3g0132831 | 23.629 | 237 | 160 | 7 | 48 | 275 | 46 | 270 | 1.48e-11 | 65.9 |
| Msa1012800 | MtrunA17_Chr3g0097831 | 36.986 | 73 | 44 | 1 | 24 | 94 | 10 | 82 | 3.09e-11 | 59.3 |
| Msa1012800 | MtrunA17_Chr7g0219121 | 23.256 | 301 | 174 | 12 | 62 | 315 | 61 | 351 | 3.66e-11 | 65.1 |
| Msa1012800 | MtrunA17_Chr3g0106631 | 32.692 | 156 | 97 | 6 | 151 | 302 | 2 | 153 | 4.44e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012800 | AT5G41040.1 | 73.441 | 433 | 109 | 4 | 11 | 437 | 25 | 457 | 0.0 | 672 |
| Msa1012800 | AT5G41040.2 | 73.441 | 433 | 109 | 4 | 11 | 437 | 9 | 441 | 0.0 | 672 |
| Msa1012800 | AT5G63560.1 | 61.520 | 421 | 152 | 4 | 20 | 437 | 13 | 426 | 0.0 | 529 |
| Msa1012800 | AT3G48720.1 | 55.847 | 419 | 181 | 3 | 21 | 437 | 14 | 430 | 1.08e-177 | 503 |
| Msa1012800 | AT5G48930.1 | 34.174 | 436 | 268 | 7 | 12 | 435 | 2 | 430 | 6.85e-82 | 259 |
| Msa1012800 | AT1G65450.1 | 36.028 | 433 | 253 | 12 | 20 | 436 | 22 | 446 | 1.90e-77 | 248 |
| Msa1012800 | AT1G03390.1 | 35.747 | 442 | 264 | 14 | 13 | 437 | 19 | 457 | 2.96e-77 | 248 |
| Msa1012800 | AT1G27620.1 | 33.724 | 427 | 260 | 9 | 19 | 435 | 12 | 425 | 9.28e-74 | 238 |
| Msa1012800 | AT5G17540.1 | 32.637 | 383 | 247 | 7 | 20 | 395 | 13 | 391 | 2.14e-64 | 214 |
| Msa1012800 | AT3G03480.1 | 34.987 | 383 | 231 | 10 | 23 | 395 | 26 | 400 | 8.19e-63 | 210 |
| Msa1012800 | AT2G19070.1 | 32.000 | 400 | 238 | 11 | 26 | 396 | 14 | 408 | 3.48e-57 | 195 |
| Msa1012800 | AT1G28680.1 | 32.258 | 434 | 270 | 12 | 20 | 435 | 13 | 440 | 4.08e-57 | 195 |
| Msa1012800 | AT5G57840.1 | 33.079 | 393 | 232 | 9 | 20 | 390 | 7 | 390 | 6.24e-57 | 194 |
| Msa1012800 | AT2G40230.1 | 31.019 | 432 | 270 | 11 | 20 | 435 | 9 | 428 | 1.71e-54 | 187 |
| Msa1012800 | AT1G28680.2 | 32.565 | 347 | 222 | 8 | 20 | 360 | 13 | 353 | 2.30e-50 | 176 |
| Msa1012800 | AT4G31910.1 | 30.189 | 424 | 259 | 13 | 31 | 423 | 26 | 443 | 4.61e-48 | 171 |
| Msa1012800 | AT5G07080.1 | 30.455 | 440 | 268 | 17 | 19 | 433 | 17 | 443 | 1.22e-45 | 164 |
| Msa1012800 | AT1G65450.3 | 32.639 | 288 | 176 | 7 | 161 | 436 | 1 | 282 | 3.78e-45 | 159 |
| Msa1012800 | AT3G47170.1 | 29.241 | 448 | 282 | 13 | 19 | 433 | 15 | 460 | 3.01e-42 | 155 |
| Msa1012800 | AT2G25150.1 | 30.995 | 442 | 264 | 14 | 23 | 435 | 20 | 449 | 2.04e-41 | 153 |
| Msa1012800 | AT3G62160.1 | 29.668 | 391 | 237 | 12 | 22 | 397 | 11 | 378 | 3.36e-41 | 152 |
| Msa1012800 | AT2G23510.1 | 29.120 | 443 | 271 | 16 | 23 | 436 | 20 | 448 | 3.94e-38 | 144 |
| Msa1012800 | AT1G78990.1 | 27.295 | 403 | 244 | 14 | 48 | 414 | 46 | 435 | 1.81e-34 | 134 |
| Msa1012800 | AT1G24430.1 | 27.818 | 417 | 254 | 17 | 35 | 432 | 27 | 415 | 3.74e-31 | 124 |
| Msa1012800 | AT1G31490.1 | 27.877 | 391 | 248 | 15 | 37 | 410 | 29 | 402 | 7.68e-30 | 120 |
| Msa1012800 | AT1G32910.1 | 25.068 | 367 | 246 | 11 | 46 | 393 | 44 | 400 | 1.94e-29 | 120 |
| Msa1012800 | AT5G16410.1 | 26.823 | 384 | 243 | 14 | 37 | 400 | 61 | 426 | 1.36e-27 | 115 |
| Msa1012800 | AT5G07870.1 | 28.754 | 313 | 196 | 9 | 62 | 356 | 66 | 369 | 1.27e-26 | 112 |
| Msa1012800 | AT5G42830.1 | 29.014 | 355 | 221 | 12 | 20 | 356 | 16 | 357 | 1.84e-26 | 111 |
| Msa1012800 | AT2G39980.1 | 26.190 | 378 | 216 | 11 | 68 | 392 | 62 | 429 | 1.35e-25 | 109 |
| Msa1012800 | AT5G23940.1 | 27.696 | 408 | 255 | 14 | 51 | 429 | 43 | 439 | 6.28e-24 | 104 |
| Msa1012800 | AT3G29670.1 | 24.112 | 394 | 271 | 12 | 48 | 419 | 42 | 429 | 1.14e-23 | 103 |
| Msa1012800 | AT5G07860.1 | 27.508 | 309 | 195 | 8 | 62 | 356 | 66 | 359 | 1.19e-23 | 103 |
| Msa1012800 | AT3G50270.1 | 26.463 | 393 | 250 | 17 | 68 | 434 | 62 | 441 | 2.35e-23 | 102 |
| Msa1012800 | AT4G15390.1 | 23.853 | 436 | 285 | 16 | 23 | 432 | 15 | 429 | 4.16e-23 | 101 |
| Msa1012800 | AT4G15390.2 | 23.853 | 436 | 285 | 16 | 23 | 432 | 15 | 429 | 4.16e-23 | 101 |
| Msa1012800 | AT5G61160.1 | 25.352 | 355 | 234 | 12 | 68 | 399 | 64 | 410 | 6.90e-23 | 100 |
| Msa1012800 | AT3G29635.1 | 24.289 | 387 | 267 | 11 | 71 | 436 | 70 | 451 | 1.11e-22 | 100 |
| Msa1012800 | AT1G24420.2 | 24.658 | 365 | 243 | 10 | 79 | 432 | 76 | 419 | 2.67e-22 | 99.0 |
| Msa1012800 | AT1G24420.1 | 24.658 | 365 | 243 | 10 | 79 | 432 | 76 | 419 | 2.67e-22 | 99.0 |
| Msa1012800 | AT3G30280.1 | 24.766 | 428 | 274 | 20 | 23 | 424 | 13 | 418 | 2.08e-20 | 93.6 |
| Msa1012800 | AT5G47950.1 | 24.439 | 401 | 254 | 17 | 48 | 432 | 42 | 409 | 3.49e-20 | 92.8 |
| Msa1012800 | AT3G50280.1 | 22.680 | 388 | 269 | 14 | 68 | 434 | 59 | 436 | 2.64e-19 | 90.1 |
| Msa1012800 | AT5G38130.1 | 24.251 | 367 | 250 | 12 | 71 | 419 | 82 | 438 | 1.86e-18 | 87.8 |
| Msa1012800 | AT5G23970.1 | 23.472 | 409 | 259 | 12 | 37 | 421 | 24 | 402 | 2.65e-18 | 87.0 |
| Msa1012800 | AT3G29590.1 | 25.220 | 341 | 223 | 13 | 76 | 392 | 69 | 401 | 4.40e-18 | 86.7 |
| Msa1012800 | AT1G65450.2 | 45.455 | 110 | 55 | 4 | 20 | 125 | 22 | 130 | 1.37e-17 | 80.5 |
| Msa1012800 | AT4G15400.1 | 24.356 | 427 | 288 | 17 | 23 | 433 | 12 | 419 | 2.08e-17 | 84.3 |
| Msa1012800 | AT5G67150.1 | 22.973 | 370 | 238 | 13 | 68 | 407 | 61 | 413 | 1.18e-16 | 82.4 |
| Msa1012800 | AT5G07850.1 | 25.364 | 343 | 216 | 14 | 20 | 343 | 27 | 348 | 1.34e-16 | 82.0 |
| Msa1012800 | AT3G29680.1 | 22.481 | 387 | 276 | 8 | 68 | 435 | 62 | 443 | 3.16e-16 | 80.9 |
| Msa1012800 | AT3G50300.1 | 24.064 | 374 | 250 | 13 | 68 | 419 | 59 | 420 | 8.60e-16 | 79.7 |
| Msa1012800 | AT5G39090.1 | 23.016 | 378 | 264 | 11 | 78 | 436 | 75 | 444 | 2.69e-14 | 75.1 |
| Msa1012800 | AT1G03495.1 | 27.778 | 288 | 168 | 15 | 68 | 322 | 66 | 346 | 1.17e-13 | 72.4 |
| Msa1012800 | AT4G29250.1 | 23.077 | 429 | 282 | 17 | 34 | 433 | 33 | 442 | 1.44e-13 | 72.8 |
| Msa1012800 | AT3G50280.2 | 22.295 | 305 | 217 | 10 | 142 | 434 | 10 | 306 | 4.65e-13 | 70.1 |
| Msa1012800 | AT1G03940.1 | 24.510 | 408 | 257 | 17 | 68 | 436 | 66 | 461 | 4.37e-12 | 68.2 |
| Msa1012800 | AT3G50290.1 | 24.906 | 265 | 183 | 7 | 137 | 389 | 9 | 269 | 1.63e-11 | 65.1 |
| Msa1012800 | AT5G39050.1 | 21.725 | 313 | 219 | 6 | 150 | 436 | 152 | 464 | 5.02e-11 | 65.1 |
Find 96 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTCCAAAAGGGTATTT+TGG | 0.109330 | 7_1:+18233498 | Msa1012800:CDS |
| AGAAGCTTTGTTTCTTGTTC+TGG | 0.223449 | 7_1:-18233441 | None:intergenic |
| GTCTGGACCGGTTTCCTTGC+CGG | 0.230469 | 7_1:+18233764 | Msa1012800:CDS |
| CTTCAATGTCAGCAAATTCT+TGG | 0.238280 | 7_1:-18233227 | None:intergenic |
| GAAAATTCTAATTATCAAAA+TGG | 0.257291 | 7_1:+18231620 | Msa1012800:CDS |
| CACCATTTCATCTTCATATA+AGG | 0.260329 | 7_1:-18233268 | None:intergenic |
| TGCTTCACACAAATATGATA+TGG | 0.268225 | 7_1:-18231432 | None:intergenic |
| CCAAGATTTAATGCAGATAT+AGG | 0.271308 | 7_1:+18233878 | Msa1012800:CDS |
| CCCTTTCATACCACCGATTT+CGG | 0.292690 | 7_1:+18233723 | Msa1012800:CDS |
| CACTGTATGTTTGATGGAAT+TGG | 0.294988 | 7_1:+18233084 | Msa1012800:CDS |
| AATTGTTCAATGGAAGAAAT+TGG | 0.299341 | 7_1:+18231947 | Msa1012800:CDS |
| CCTTTCTTTGTTTCTTCAGA+TGG | 0.304433 | 7_1:-18231692 | None:intergenic |
| AACAAGAGCTAGGCCATCTT+TGG | 0.319090 | 7_1:+18233665 | Msa1012800:CDS |
| CAAGTGTTGGTTCACTTGTT+AGG | 0.323483 | 7_1:-18231664 | None:intergenic |
| AGTGCTGTTTATGAATTTAT+TGG | 0.329556 | 7_1:+18233977 | Msa1012800:three_prime_UTR |
| AGAAGCATTAATGTGCTTCT+AGG | 0.333464 | 7_1:+18233828 | Msa1012800:CDS |
| TGGTGCAAATGCTCTATCTT+CGG | 0.344041 | 7_1:-18233207 | None:intergenic |
| GTTCATTATTACCCTCTTGC+TGG | 0.346873 | 7_1:+18231845 | Msa1012800:CDS |
| CCATTCCCAAAATACCCTTT+TGG | 0.354945 | 7_1:-18233504 | None:intergenic |
| ATATTTGTGTGAAGCAATTC+AGG | 0.371213 | 7_1:+18231439 | Msa1012800:five_prime_UTR |
| GGTGCAAATGCTCTATCTTC+GGG | 0.375653 | 7_1:-18233206 | None:intergenic |
| CGATTTCGGTTGGGGAGAAC+CGG | 0.379270 | 7_1:+18233737 | Msa1012800:CDS |
| GAATGCTTGTGAAGTGATTA+AGG | 0.383599 | 7_1:+18231802 | Msa1012800:CDS |
| CCTATATCTGCATTAAATCT+TGG | 0.386363 | 7_1:-18233878 | None:intergenic |
| TCATACCACCGATTTCGGTT+GGG | 0.393719 | 7_1:+18233728 | Msa1012800:CDS |
| TATTCTTCAGATGCCTCCTT+TGG | 0.394177 | 7_1:+18232036 | Msa1012800:CDS |
| AAGTGCTTTCAGCATTTGTT+TGG | 0.399533 | 7_1:+18233388 | Msa1012800:CDS |
| TCCTTCTCCGGCAAGGAAAC+CGG | 0.400213 | 7_1:-18233771 | None:intergenic |
| GATGCCTCCTTTGGTTGCTC+AGG | 0.401248 | 7_1:+18232045 | Msa1012800:CDS |
| AGTATGCTTCGGTCGAGAAC+TGG | 0.410989 | 7_1:-18233168 | None:intergenic |
| CGGTTCTCCCCAACCGAAAT+CGG | 0.413358 | 7_1:-18233736 | None:intergenic |
| TGGGGAGAACCGGTTCTGTC+TGG | 0.419323 | 7_1:+18233747 | Msa1012800:CDS |
| TTCATATAAGGTACTAGTGT+TGG | 0.419653 | 7_1:-18233256 | None:intergenic |
| TTCATACCACCGATTTCGGT+TGG | 0.423100 | 7_1:+18233727 | Msa1012800:CDS |
| TACCTTATATGAAGATGAAA+TGG | 0.425519 | 7_1:+18233266 | Msa1012800:CDS |
| AACAAAATCACTTCCTTCTC+CGG | 0.435908 | 7_1:-18233783 | None:intergenic |
| CATACCACCGATTTCGGTTG+GGG | 0.437822 | 7_1:+18233729 | Msa1012800:CDS |
| TCCAAGGACTCTTGGTATGT+TGG | 0.438373 | 7_1:+18231988 | Msa1012800:CDS |
| TTTGAACCAAAACTTCCAAA+AGG | 0.445633 | 7_1:+18233489 | Msa1012800:CDS |
| TTCTTTGTTTCTTCAGATGG+TGG | 0.446811 | 7_1:-18231689 | None:intergenic |
| AACCTTCACCGTATACGAAA+AGG | 0.447710 | 7_1:-18233577 | None:intergenic |
| TGCGCACCTTTAGTATGCTT+CGG | 0.452621 | 7_1:-18233179 | None:intergenic |
| GCTTCACACAAATATGATAT+GGG | 0.459751 | 7_1:-18231431 | None:intergenic |
| TGAAGAATATGTTTAGCATC+AGG | 0.461984 | 7_1:-18232022 | None:intergenic |
| AAACCTGATCCAAGGACTCT+TGG | 0.464374 | 7_1:+18231980 | Msa1012800:CDS |
| ATGAATCACTGTATGTTTGA+TGG | 0.464465 | 7_1:+18233078 | Msa1012800:CDS |
| ACAAATGCTGTTTGTAAAGC+AGG | 0.466739 | 7_1:+18233537 | Msa1012800:CDS |
| ATACCAAGAGTCCTTGGATC+AGG | 0.478213 | 7_1:-18231983 | None:intergenic |
| ACCAACATACCAAGAGTCCT+TGG | 0.479611 | 7_1:-18231989 | None:intergenic |
| GGCTGAAGCTAATTGTTCAA+TGG | 0.480046 | 7_1:+18231937 | Msa1012800:CDS |
| CTATGGAGTTTGTGAACTCA+TGG | 0.489466 | 7_1:+18233109 | Msa1012800:CDS |
| TCAGATGGTGGAACAAGTGT+TGG | 0.489688 | 7_1:-18231677 | None:intergenic |
| ACCGGTTTCCTTGCCGGAGA+AGG | 0.494266 | 7_1:+18233770 | Msa1012800:CDS |
| ACCGAAATCGGTGGTATGAA+AGG | 0.500259 | 7_1:-18233724 | None:intergenic |
| TTGGTAGTAAGCAATAACTA+AGG | 0.501457 | 7_1:+18233996 | Msa1012800:three_prime_UTR |
| AAAACCTCCACATTTGAACT+TGG | 0.504811 | 7_1:-18233040 | None:intergenic |
| CTCAGAGGGTAAACTGATTG+TGG | 0.510531 | 7_1:+18231883 | Msa1012800:CDS |
| ACCTTCACCGTATACGAAAA+GGG | 0.526148 | 7_1:-18233576 | None:intergenic |
| AAGATCTTCATGACAGGAGC+AGG | 0.527288 | 7_1:-18233855 | None:intergenic |
| TTGAACCAAAACTTCCAAAA+GGG | 0.529877 | 7_1:+18233490 | Msa1012800:CDS |
| CCGAAATCGGTGGTATGAAA+GGG | 0.531154 | 7_1:-18233723 | None:intergenic |
| TCCTCTCTTGACCATGTGAA+AGG | 0.539507 | 7_1:-18233806 | None:intergenic |
| GTTTGATGGAATTGGAGCTA+TGG | 0.548532 | 7_1:+18233092 | Msa1012800:CDS |
| TAATCAAGAAGTGTTTGAGA+TGG | 0.549573 | 7_1:+18231598 | Msa1012800:exon |
| GAAACCGGTCCAGACAGAAC+CGG | 0.551440 | 7_1:-18233756 | None:intergenic |
| AAAAGTGTACAAGCCAAAGA+TGG | 0.555885 | 7_1:-18233678 | None:intergenic |
| AGAACCGGTTCTGTCTGGAC+CGG | 0.557075 | 7_1:+18233752 | Msa1012800:CDS |
| TATTCAAGATGCAATCAAGA+TGG | 0.561804 | 7_1:+18233599 | Msa1012800:CDS |
| CCATCTGAAGAAACAAAGAA+AGG | 0.565357 | 7_1:+18231692 | Msa1012800:CDS |
| AGAACTGGAGGGACGGAGAG+TGG | 0.567166 | 7_1:-18233153 | None:intergenic |
| TATGGAGTTTGTGAACTCAT+GGG | 0.568942 | 7_1:+18233110 | Msa1012800:CDS |
| TCTTGGAAGATCTTCATGAC+AGG | 0.573252 | 7_1:-18233861 | None:intergenic |
| TCCTTTCACATGGTCAAGAG+AGG | 0.581268 | 7_1:+18233805 | Msa1012800:CDS |
| AAACTGATTGTGGATTGTAC+AGG | 0.586136 | 7_1:+18231893 | Msa1012800:CDS |
| AGATTAAGTATAAGCTCAGA+GGG | 0.587672 | 7_1:+18231869 | Msa1012800:CDS |
| TCTCGACCGAAGCATACTAA+AGG | 0.588752 | 7_1:+18233173 | Msa1012800:CDS |
| CAGCTGACCAAGTTCAAATG+TGG | 0.590914 | 7_1:+18233033 | Msa1012800:intron |
| ATGCTTCGGTCGAGAACTGG+AGG | 0.593369 | 7_1:-18233165 | None:intergenic |
| GTGCAAATGCTCTATCTTCG+GGG | 0.597277 | 7_1:-18233205 | None:intergenic |
| AATCACTTCCTTCTCCGGCA+AGG | 0.599797 | 7_1:-18233778 | None:intergenic |
| CTGACCAAGTTCAAATGTGG+AGG | 0.605830 | 7_1:+18233036 | Msa1012800:CDS |
| ATGGAGTTTGTGAACTCATG+GGG | 0.608694 | 7_1:+18233111 | Msa1012800:CDS |
| ATACTTAATCTACCAGCAAG+AGG | 0.612226 | 7_1:-18231857 | None:intergenic |
| TGCAAATGCTCTATCTTCGG+GGG | 0.613923 | 7_1:-18233204 | None:intergenic |
| ATATTACAAAACCTGATCCA+AGG | 0.621561 | 7_1:+18231972 | Msa1012800:CDS |
| CATACCTGAGCAACCAAAGG+AGG | 0.626730 | 7_1:-18232049 | None:intergenic |
| TCGGTCGAGAACTGGAGGGA+CGG | 0.629795 | 7_1:-18233160 | None:intergenic |
| TACTTAATCTACCAGCAAGA+GGG | 0.630868 | 7_1:-18231856 | None:intergenic |
| AAACATACCTGAGCAACCAA+AGG | 0.647608 | 7_1:-18232052 | None:intergenic |
| TAGATTAAGTATAAGCTCAG+AGG | 0.659227 | 7_1:+18231868 | Msa1012800:CDS |
| AAAGCTTTAGAAGATGAAGG+TGG | 0.665451 | 7_1:+18233339 | Msa1012800:CDS |
| TTCTCCCCAACCGAAATCGG+TGG | 0.671335 | 7_1:-18233733 | None:intergenic |
| TGGAGTTTGTGAACTCATGG+GGG | 0.682291 | 7_1:+18233112 | Msa1012800:CDS |
| ATTGTGGATTGTACAGGAGA+AGG | 0.683782 | 7_1:+18231899 | Msa1012800:CDS |
| TGCTTCGGTCGAGAACTGGA+GGG | 0.687735 | 7_1:-18233164 | None:intergenic |
| GGAGTTTGTGAACTCATGGG+GGG | 0.709273 | 7_1:+18233113 | Msa1012800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAAAAAAAATTAGTTA+AGG | + | chr7_1:18232413-18232432 | Msa1012800:intron | 10.0% |
| !! | GATTAAAAAAAATTAGTTAA+GGG | + | chr7_1:18232414-18232433 | Msa1012800:intron | 10.0% |
| !!! | TTGTGTTATTTTTTATTATA+TGG | + | chr7_1:18233925-18233944 | Msa1012800:three_prime_UTR | 10.0% |
| !! | GAAAATTCTAATTATCAAAA+TGG | + | chr7_1:18231620-18231639 | Msa1012800:CDS | 15.0% |
| !!! | TCCTAAACTTTTAAATAATT+TGG | + | chr7_1:18232300-18232319 | Msa1012800:intron | 15.0% |
| !! | TCCAAATTATTTAAAAGTTT+AGG | - | chr7_1:18232304-18232323 | None:intergenic | 15.0% |
| !!! | AGTTTTTGCTAAAATTATAA+TGG | + | chr7_1:18232497-18232516 | Msa1012800:intron | 15.0% |
| !!! | CTATTTGAGAAATTTTAAAT+AGG | - | chr7_1:18232621-18232640 | None:intergenic | 15.0% |
| !! | ATTTATGTATGATAAACATA+AGG | + | chr7_1:18232785-18232804 | Msa1012800:intron | 15.0% |
| !! | AATGTTATGTTTGAAGATTA+AGG | - | chr7_1:18231534-18231553 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGTTTGTAAAAC+AGG | + | chr7_1:18231570-18231589 | Msa1012800:intron | 20.0% |
| !!! | CTTTTAAATAATTTGGACTT+TGG | + | chr7_1:18232307-18232326 | Msa1012800:intron | 20.0% |
| !! | TTTGATTATTGACATAGAAA+CGG | - | chr7_1:18232885-18232904 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATATAGTTGATG+CGG | + | chr7_1:18232965-18232984 | Msa1012800:intron | 20.0% |
| ! | AATTGTTCAATGGAAGAAAT+TGG | + | chr7_1:18231947-18231966 | Msa1012800:CDS | 25.0% |
| ! | AAAAATATTTCGCACATGTT+TGG | - | chr7_1:18232555-18232574 | None:intergenic | 25.0% |
| ! | CAGTGACAAAAAATAAATGA+AGG | - | chr7_1:18232666-18232685 | None:intergenic | 25.0% |
| ! | CATACATAAATTCCTATGAA+TGG | - | chr7_1:18232776-18232795 | None:intergenic | 25.0% |
| ! | TCATATTGCAACTATAATTG+TGG | - | chr7_1:18232991-18233010 | None:intergenic | 25.0% |
| ! | TACCTTATATGAAGATGAAA+TGG | + | chr7_1:18233266-18233285 | Msa1012800:CDS | 25.0% |
| !!! | TTCAATTCTTTTAGTTTCTC+GGG | - | chr7_1:18233315-18233334 | None:intergenic | 25.0% |
| !!! | CTTCAATTCTTTTAGTTTCT+CGG | - | chr7_1:18233316-18233335 | None:intergenic | 25.0% |
| !!! | AAAAAAGCTTTAGAAGATGA+AGG | + | chr7_1:18233336-18233355 | Msa1012800:CDS | 25.0% |
| !!! | AGTGCTGTTTATGAATTTAT+TGG | + | chr7_1:18233977-18233996 | Msa1012800:three_prime_UTR | 25.0% |
| GCTTCACACAAATATGATAT+GGG | - | chr7_1:18231434-18231453 | None:intergenic | 30.0% | |
| TGCTTCACACAAATATGATA+TGG | - | chr7_1:18231435-18231454 | None:intergenic | 30.0% | |
| ATATTTGTGTGAAGCAATTC+AGG | + | chr7_1:18231439-18231458 | Msa1012800:five_prime_UTR | 30.0% | |
| !! | TAATCAAGAAGTGTTTGAGA+TGG | + | chr7_1:18231598-18231617 | Msa1012800:exon | 30.0% |
| !!! | TGTTTTGATCAAGGTTTGAT+AGG | - | chr7_1:18231727-18231746 | None:intergenic | 30.0% |
| TTGCTTCAAAAATGAAGAGA+AGG | + | chr7_1:18231772-18231791 | Msa1012800:CDS | 30.0% | |
| TGCTTCAAAAATGAAGAGAA+GGG | + | chr7_1:18231773-18231792 | Msa1012800:CDS | 30.0% | |
| TAGATTAAGTATAAGCTCAG+AGG | + | chr7_1:18231868-18231887 | Msa1012800:CDS | 30.0% | |
| AGATTAAGTATAAGCTCAGA+GGG | + | chr7_1:18231869-18231888 | Msa1012800:CDS | 30.0% | |
| ATATTACAAAACCTGATCCA+AGG | + | chr7_1:18231972-18231991 | Msa1012800:CDS | 30.0% | |
| TGAAGAATATGTTTAGCATC+AGG | - | chr7_1:18232025-18232044 | None:intergenic | 30.0% | |
| !!! | GTTACTAGTCTTTTTGTAGT+TGG | + | chr7_1:18232076-18232095 | Msa1012800:intron | 30.0% |
| ! | TCTTTTTGTAGTTGGATTTC+TGG | + | chr7_1:18232084-18232103 | Msa1012800:intron | 30.0% |
| TCTCAAATTATTATCCGTGT+CGG | - | chr7_1:18232180-18232199 | None:intergenic | 30.0% | |
| TCAGAGGTTACTTGTAATTT+CGG | + | chr7_1:18232276-18232295 | Msa1012800:intron | 30.0% | |
| ATGAATCACTGTATGTTTGA+TGG | + | chr7_1:18233078-18233097 | Msa1012800:CDS | 30.0% | |
| ! | TTCATATAAGGTACTAGTGT+TGG | - | chr7_1:18233259-18233278 | None:intergenic | 30.0% |
| CACCATTTCATCTTCATATA+AGG | - | chr7_1:18233271-18233290 | None:intergenic | 30.0% | |
| TTTGAACCAAAACTTCCAAA+AGG | + | chr7_1:18233489-18233508 | Msa1012800:CDS | 30.0% | |
| TTGAACCAAAACTTCCAAAA+GGG | + | chr7_1:18233490-18233509 | Msa1012800:CDS | 30.0% | |
| !! | AAATACCCTTTTGGAAGTTT+TGG | - | chr7_1:18233498-18233517 | None:intergenic | 30.0% |
| !!! | AAACTTCCAAAAGGGTATTT+TGG | + | chr7_1:18233498-18233517 | Msa1012800:CDS | 30.0% |
| !!! | AACTTCCAAAAGGGTATTTT+GGG | + | chr7_1:18233499-18233518 | Msa1012800:CDS | 30.0% |
| TATTCAAGATGCAATCAAGA+TGG | + | chr7_1:18233599-18233618 | Msa1012800:CDS | 30.0% | |
| !! | ATCAGCTATCGATTATTTTG+AGG | + | chr7_1:18233641-18233660 | Msa1012800:CDS | 30.0% |
| CCTATATCTGCATTAAATCT+TGG | - | chr7_1:18233881-18233900 | None:intergenic | 30.0% | |
| CCAAGATTTAATGCAGATAT+AGG | + | chr7_1:18233878-18233897 | Msa1012800:CDS | 30.0% | |
| ! | TTGGTAGTAAGCAATAACTA+AGG | + | chr7_1:18233996-18234015 | Msa1012800:three_prime_UTR | 30.0% |
| GCAATGTTGAAAATGTCACA+TGG | - | chr7_1:18231496-18231515 | None:intergenic | 35.0% | |
| ! | TTCTTTGTTTCTTCAGATGG+TGG | - | chr7_1:18231692-18231711 | None:intergenic | 35.0% |
| ! | CCTTTCTTTGTTTCTTCAGA+TGG | - | chr7_1:18231695-18231714 | None:intergenic | 35.0% |
| CCATCTGAAGAAACAAAGAA+AGG | + | chr7_1:18231692-18231711 | Msa1012800:CDS | 35.0% | |
| !!! | TCACAGCAATGTTTTGATCA+AGG | - | chr7_1:18231736-18231755 | None:intergenic | 35.0% |
| GCTTCAAAAATGAAGAGAAG+GGG | + | chr7_1:18231774-18231793 | Msa1012800:CDS | 35.0% | |
| GAATGCTTGTGAAGTGATTA+AGG | + | chr7_1:18231802-18231821 | Msa1012800:CDS | 35.0% | |
| TACTTAATCTACCAGCAAGA+GGG | - | chr7_1:18231859-18231878 | None:intergenic | 35.0% | |
| ATACTTAATCTACCAGCAAG+AGG | - | chr7_1:18231860-18231879 | None:intergenic | 35.0% | |
| ! | AAACTGATTGTGGATTGTAC+AGG | + | chr7_1:18231893-18231912 | Msa1012800:CDS | 35.0% |
| TGTATTCATAGATGTCGTGT+CGG | + | chr7_1:18232216-18232235 | Msa1012800:intron | 35.0% | |
| TCAAGTGTATCTTTGATGAG+TGG | + | chr7_1:18232443-18232462 | Msa1012800:intron | 35.0% | |
| TAGTTGCAATATGATCACTG+AGG | + | chr7_1:18232997-18233016 | Msa1012800:intron | 35.0% | |
| AAAACCTCCACATTTGAACT+TGG | - | chr7_1:18233043-18233062 | None:intergenic | 35.0% | |
| ! | AAATGTGGAGGTTTTTCTCT+TGG | + | chr7_1:18233048-18233067 | Msa1012800:CDS | 35.0% |
| CACTGTATGTTTGATGGAAT+TGG | + | chr7_1:18233084-18233103 | Msa1012800:CDS | 35.0% | |
| TATGGAGTTTGTGAACTCAT+GGG | + | chr7_1:18233110-18233129 | Msa1012800:CDS | 35.0% | |
| CTTCAATGTCAGCAAATTCT+TGG | - | chr7_1:18233230-18233249 | None:intergenic | 35.0% | |
| !! | AAAGCTTTAGAAGATGAAGG+TGG | + | chr7_1:18233339-18233358 | Msa1012800:CDS | 35.0% |
| AAGTGCTTTCAGCATTTGTT+TGG | + | chr7_1:18233388-18233407 | Msa1012800:CDS | 35.0% | |
| !! | AGAAGCTTTGTTTCTTGTTC+TGG | - | chr7_1:18233444-18233463 | None:intergenic | 35.0% |
| !!! | AAGCTTCTTTTTGCTGTTGA+TGG | + | chr7_1:18233456-18233475 | Msa1012800:CDS | 35.0% |
| !!! | TTCTTTTTGCTGTTGATGGA+AGG | + | chr7_1:18233460-18233479 | Msa1012800:CDS | 35.0% |
| !!! | TCTTTTTGCTGTTGATGGAA+GGG | + | chr7_1:18233461-18233480 | Msa1012800:CDS | 35.0% |
| ! | ACAAATGCTGTTTGTAAAGC+AGG | + | chr7_1:18233537-18233556 | Msa1012800:CDS | 35.0% |
| !!! | ATTTTGAGGTAACAAGAGCT+AGG | + | chr7_1:18233655-18233674 | Msa1012800:CDS | 35.0% |
| ! | AAAAGTGTACAAGCCAAAGA+TGG | - | chr7_1:18233681-18233700 | None:intergenic | 35.0% |
| ! | GTACACTTTTGATCACAACT+TGG | + | chr7_1:18233691-18233710 | Msa1012800:CDS | 35.0% |
| ! | TTTTGATCACAACTTGGTCT+AGG | + | chr7_1:18233697-18233716 | Msa1012800:CDS | 35.0% |
| AACAAAATCACTTCCTTCTC+CGG | - | chr7_1:18233786-18233805 | None:intergenic | 35.0% | |
| ! | GTGATTTTGTTCCTTTCACA+TGG | + | chr7_1:18233795-18233814 | Msa1012800:CDS | 35.0% |
| !! | AGAAGCATTAATGTGCTTCT+AGG | + | chr7_1:18233828-18233847 | Msa1012800:CDS | 35.0% |
| !! | CAAGTGTTGGTTCACTTGTT+AGG | - | chr7_1:18231667-18231686 | None:intergenic | 40.0% |
| GTTCATTATTACCCTCTTGC+TGG | + | chr7_1:18231845-18231864 | Msa1012800:CDS | 40.0% | |
| ! | ATTGTGGATTGTACAGGAGA+AGG | + | chr7_1:18231899-18231918 | Msa1012800:CDS | 40.0% |
| !!! | AGAAGGTGCTCTTTTTGTTG+AGG | + | chr7_1:18231916-18231935 | Msa1012800:CDS | 40.0% |
| GGCTGAAGCTAATTGTTCAA+TGG | + | chr7_1:18231937-18231956 | Msa1012800:CDS | 40.0% | |
| TATTCTTCAGATGCCTCCTT+TGG | + | chr7_1:18232036-18232055 | Msa1012800:CDS | 40.0% | |
| AAACATACCTGAGCAACCAA+AGG | - | chr7_1:18232055-18232074 | None:intergenic | 40.0% | |
| ATGAAGCGCATACACAAACA+CGG | + | chr7_1:18232125-18232144 | Msa1012800:intron | 40.0% | |
| ! | TATTATCCGTGTCGGTGTAT+CGG | - | chr7_1:18232172-18232191 | None:intergenic | 40.0% |
| !! | TTCTCAGATTTGAGTTGTCC+CGG | - | chr7_1:18232245-18232264 | None:intergenic | 40.0% |
| !! | TACAAGTAACCTCTGAAGCA+TGG | - | chr7_1:18232272-18232291 | None:intergenic | 40.0% |
| GCATTTCTCAAGCCATTCAT+AGG | + | chr7_1:18232761-18232780 | Msa1012800:intron | 40.0% | |
| GTTTGATGGAATTGGAGCTA+TGG | + | chr7_1:18233092-18233111 | Msa1012800:CDS | 40.0% | |
| CTATGGAGTTTGTGAACTCA+TGG | + | chr7_1:18233109-18233128 | Msa1012800:CDS | 40.0% | |
| ATGGAGTTTGTGAACTCATG+GGG | + | chr7_1:18233111-18233130 | Msa1012800:CDS | 40.0% | |
| TGGTGCAAATGCTCTATCTT+CGG | - | chr7_1:18233210-18233229 | None:intergenic | 40.0% | |
| ! | CCATTCCCAAAATACCCTTT+TGG | - | chr7_1:18233507-18233526 | None:intergenic | 40.0% |
| !!! | CCAAAAGGGTATTTTGGGAA+TGG | + | chr7_1:18233504-18233523 | Msa1012800:CDS | 40.0% |
| ! | GAACAAGCCCTTTTCGTATA+CGG | + | chr7_1:18233569-18233588 | Msa1012800:CDS | 40.0% |
| ACCTTCACCGTATACGAAAA+GGG | - | chr7_1:18233579-18233598 | None:intergenic | 40.0% | |
| AACCTTCACCGTATACGAAA+AGG | - | chr7_1:18233580-18233599 | None:intergenic | 40.0% | |
| TCTTGGAAGATCTTCATGAC+AGG | - | chr7_1:18233864-18233883 | None:intergenic | 40.0% | |
| !! | TCAGATGGTGGAACAAGTGT+TGG | - | chr7_1:18231680-18231699 | None:intergenic | 45.0% |
| CTCAGAGGGTAAACTGATTG+TGG | + | chr7_1:18231883-18231902 | Msa1012800:CDS | 45.0% | |
| AAACCTGATCCAAGGACTCT+TGG | + | chr7_1:18231980-18231999 | Msa1012800:CDS | 45.0% | |
| ATACCAAGAGTCCTTGGATC+AGG | - | chr7_1:18231986-18232005 | None:intergenic | 45.0% | |
| TCCAAGGACTCTTGGTATGT+TGG | + | chr7_1:18231988-18232007 | Msa1012800:CDS | 45.0% | |
| ACCAACATACCAAGAGTCCT+TGG | - | chr7_1:18231992-18232011 | None:intergenic | 45.0% | |
| GCATACACAAACACGGACAT+TGG | + | chr7_1:18232132-18232151 | Msa1012800:intron | 45.0% | |
| CAGCTGACCAAGTTCAAATG+TGG | + | chr7_1:18233033-18233052 | Msa1012800:intron | 45.0% | |
| CTGACCAAGTTCAAATGTGG+AGG | + | chr7_1:18233036-18233055 | Msa1012800:CDS | 45.0% | |
| TGGAGTTTGTGAACTCATGG+GGG | + | chr7_1:18233112-18233131 | Msa1012800:CDS | 45.0% | |
| TCTCGACCGAAGCATACTAA+AGG | + | chr7_1:18233173-18233192 | Msa1012800:CDS | 45.0% | |
| TGCGCACCTTTAGTATGCTT+CGG | - | chr7_1:18233182-18233201 | None:intergenic | 45.0% | |
| TGCAAATGCTCTATCTTCGG+GGG | - | chr7_1:18233207-18233226 | None:intergenic | 45.0% | |
| GTGCAAATGCTCTATCTTCG+GGG | - | chr7_1:18233208-18233227 | None:intergenic | 45.0% | |
| GGTGCAAATGCTCTATCTTC+GGG | - | chr7_1:18233209-18233228 | None:intergenic | 45.0% | |
| AACAAGAGCTAGGCCATCTT+TGG | + | chr7_1:18233665-18233684 | Msa1012800:CDS | 45.0% | |
| CCGAAATCGGTGGTATGAAA+GGG | - | chr7_1:18233726-18233745 | None:intergenic | 45.0% | |
| !! | CCCTTTCATACCACCGATTT+CGG | + | chr7_1:18233723-18233742 | Msa1012800:CDS | 45.0% |
| ACCGAAATCGGTGGTATGAA+AGG | - | chr7_1:18233727-18233746 | None:intergenic | 45.0% | |
| !! | TTCATACCACCGATTTCGGT+TGG | + | chr7_1:18233727-18233746 | Msa1012800:CDS | 45.0% |
| !! | TCATACCACCGATTTCGGTT+GGG | + | chr7_1:18233728-18233747 | Msa1012800:CDS | 45.0% |
| TCCTTTCACATGGTCAAGAG+AGG | + | chr7_1:18233805-18233824 | Msa1012800:CDS | 45.0% | |
| TCCTCTCTTGACCATGTGAA+AGG | - | chr7_1:18233809-18233828 | None:intergenic | 45.0% | |
| AAGATCTTCATGACAGGAGC+AGG | - | chr7_1:18233858-18233877 | None:intergenic | 45.0% | |
| CATACCTGAGCAACCAAAGG+AGG | - | chr7_1:18232052-18232071 | None:intergenic | 50.0% | |
| ! | ATAGATGTCGTGTCGGTGTC+CGG | + | chr7_1:18232223-18232242 | Msa1012800:intron | 50.0% |
| !! | GAGAAGTGTCCATGCTTCAG+AGG | + | chr7_1:18232260-18232279 | Msa1012800:intron | 50.0% |
| GGAGTTTGTGAACTCATGGG+GGG | + | chr7_1:18233113-18233132 | Msa1012800:CDS | 50.0% | |
| AGTATGCTTCGGTCGAGAAC+TGG | - | chr7_1:18233171-18233190 | None:intergenic | 50.0% | |
| ! | GCCCTTTTCGTATACGGTGA+AGG | + | chr7_1:18233575-18233594 | Msa1012800:CDS | 50.0% |
| !! | CATACCACCGATTTCGGTTG+GGG | + | chr7_1:18233729-18233748 | Msa1012800:CDS | 50.0% |
| AATCACTTCCTTCTCCGGCA+AGG | - | chr7_1:18233781-18233800 | None:intergenic | 50.0% | |
| GATGCCTCCTTTGGTTGCTC+AGG | + | chr7_1:18232045-18232064 | Msa1012800:CDS | 55.0% | |
| CACGGACATTGGACACGACA+CGG | + | chr7_1:18232143-18232162 | Msa1012800:intron | 55.0% | |
| ! | TAGATGTCGTGTCGGTGTCC+GGG | + | chr7_1:18232224-18232243 | Msa1012800:intron | 55.0% |
| TCATGGGGGGAACTAGCAAG+AGG | + | chr7_1:18233126-18233145 | Msa1012800:CDS | 55.0% | |
| TGCTTCGGTCGAGAACTGGA+GGG | - | chr7_1:18233167-18233186 | None:intergenic | 55.0% | |
| ATGCTTCGGTCGAGAACTGG+AGG | - | chr7_1:18233168-18233187 | None:intergenic | 55.0% | |
| TTCTCCCCAACCGAAATCGG+TGG | - | chr7_1:18233736-18233755 | None:intergenic | 55.0% | |
| CGGTTCTCCCCAACCGAAAT+CGG | - | chr7_1:18233739-18233758 | None:intergenic | 55.0% | |
| CGATTTCGGTTGGGGAGAAC+CGG | + | chr7_1:18233737-18233756 | Msa1012800:CDS | 55.0% | |
| ! | AGAACCGGTTCTGTCTGGAC+CGG | + | chr7_1:18233752-18233771 | Msa1012800:CDS | 55.0% |
| GAAACCGGTCCAGACAGAAC+CGG | - | chr7_1:18233759-18233778 | None:intergenic | 55.0% | |
| TCCTTCTCCGGCAAGGAAAC+CGG | - | chr7_1:18233774-18233793 | None:intergenic | 55.0% | |
| CGGACACCGATACACCGACA+CGG | + | chr7_1:18232163-18232182 | Msa1012800:intron | 60.0% | |
| AGAACTGGAGGGACGGAGAG+TGG | - | chr7_1:18233156-18233175 | None:intergenic | 60.0% | |
| TCGGTCGAGAACTGGAGGGA+CGG | - | chr7_1:18233163-18233182 | None:intergenic | 60.0% | |
| ! | TGGGGAGAACCGGTTCTGTC+TGG | + | chr7_1:18233747-18233766 | Msa1012800:CDS | 60.0% |
| ! | GTCTGGACCGGTTTCCTTGC+CGG | + | chr7_1:18233764-18233783 | Msa1012800:CDS | 60.0% |
| ! | ACCGGTTTCCTTGCCGGAGA+AGG | + | chr7_1:18233770-18233789 | Msa1012800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 18231400 | 18234029 | 18231400 | ID=Msa1012800;Name=Msa1012800 |
| chr7_1 | mRNA | 18231400 | 18234029 | 18231400 | ID=Msa1012800-mRNA-1;Parent=Msa1012800;Name=Msa1012800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|0.5|0.33|3|130|437 |
| chr7_1 | exon | 18231400 | 18231460 | 18231400 | ID=Msa1012800-mRNA-1:exon:4555;Parent=Msa1012800-mRNA-1 |
| chr7_1 | exon | 18231592 | 18232066 | 18231592 | ID=Msa1012800-mRNA-1:exon:4556;Parent=Msa1012800-mRNA-1 |
| chr7_1 | exon | 18233036 | 18234029 | 18233036 | ID=Msa1012800-mRNA-1:exon:4557;Parent=Msa1012800-mRNA-1 |
| chr7_1 | five_prime_UTR | 18231400 | 18231460 | 18231400 | ID=Msa1012800-mRNA-1:five_prime_utr;Parent=Msa1012800-mRNA-1 |
| chr7_1 | five_prime_UTR | 18231592 | 18231616 | 18231592 | ID=Msa1012800-mRNA-1:five_prime_utr;Parent=Msa1012800-mRNA-1 |
| chr7_1 | CDS | 18231617 | 18232066 | 18231617 | ID=Msa1012800-mRNA-1:cds;Parent=Msa1012800-mRNA-1 |
| chr7_1 | CDS | 18233036 | 18233899 | 18233036 | ID=Msa1012800-mRNA-1:cds;Parent=Msa1012800-mRNA-1 |
| chr7_1 | three_prime_UTR | 18233900 | 18234029 | 18233900 | ID=Msa1012800-mRNA-1:three_prime_utr;Parent=Msa1012800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
