AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012800 MtrunA17_Chr7g0224391 99.085 437 4 0 1 437 1 437 0.0 899
Msa1012800 MtrunA17_Chr3g0132001 66.826 419 136 2 20 437 18 434 0.0 588
Msa1012800 MtrunA17_Chr8g0386141 61.682 428 159 3 12 437 4 428 0.0 540
Msa1012800 MtrunA17_Chr4g0001861 34.483 435 266 7 13 435 3 430 6.48e-85 266
Msa1012800 MtrunA17_Chr2g0334001 34.247 438 262 9 13 435 3 429 1.63e-82 260
Msa1012800 MtrunA17_Chr8g0371821 34.895 427 254 10 23 435 10 426 2.63e-79 252
Msa1012800 MtrunA17_Chr5g0433641 35.917 387 234 8 20 397 14 395 2.58e-77 248
Msa1012800 MtrunA17_Chr1g0191081 34.419 430 255 11 19 431 21 440 1.31e-75 243
Msa1012800 MtrunA17_Chr1g0165671 34.375 384 240 7 19 396 30 407 7.39e-75 241
Msa1012800 MtrunA17_Chr2g0306321 36.364 396 228 15 36 412 41 431 3.85e-74 239
Msa1012800 MtrunA17_Chr7g0273721 34.367 387 239 8 19 395 14 395 8.23e-73 236
Msa1012800 MtrunA17_Chr1g0165661 33.333 423 264 10 20 429 13 430 1.78e-72 235
Msa1012800 MtrunA17_Chr1g0165681 33.596 381 241 8 23 396 16 391 2.39e-71 232
Msa1012800 MtrunA17_Chr7g0273761 32.870 432 264 10 20 433 386 809 4.48e-70 237
Msa1012800 MtrunA17_Chr7g0273761 30.612 294 190 6 150 433 32 321 4.59e-39 150
Msa1012800 MtrunA17_Chr7g0273781 32.637 383 247 5 20 395 47 425 3.45e-68 224
Msa1012800 MtrunA17_Chr7g0273731 33.073 384 246 6 19 395 96 475 1.36e-67 224
Msa1012800 MtrunA17_Chr7g0273791 31.854 383 250 6 20 395 14 392 5.08e-66 219
Msa1012800 MtrunA17_Chr3g0141851 32.715 431 259 13 22 436 18 433 2.64e-65 216
Msa1012800 MtrunA17_Chr2g0311401 36.455 299 170 5 150 434 6 298 2.73e-64 209
Msa1012800 MtrunA17_Chr3g0087401 30.543 442 267 12 24 432 10 444 2.69e-63 211
Msa1012800 MtrunA17_Chr7g0235531 30.626 431 281 8 20 435 8 435 5.29e-61 204
Msa1012800 MtrunA17_Chr4g0027071 32.143 448 267 15 18 436 14 453 1.17e-60 204
Msa1012800 MtrunA17_Chr7g0252731 29.976 417 258 10 22 426 23 417 1.40e-60 203
Msa1012800 MtrunA17_Chr4g0072041 33.000 400 237 9 24 396 22 417 8.56e-59 199
Msa1012800 MtrunA17_Chr1g0165711 32.021 381 212 10 21 396 14 352 8.50e-56 190
Msa1012800 MtrunA17_Chr3g0113821 31.481 432 274 11 20 436 9 433 1.51e-55 190
Msa1012800 MtrunA17_Chr4g0054081 29.777 403 244 9 24 395 17 411 4.88e-49 173
Msa1012800 MtrunA17_Chr7g0253541 30.310 419 240 16 13 391 2 408 9.83e-47 167
Msa1012800 MtrunA17_Chr2g0283361 29.540 413 272 12 39 437 29 436 4.63e-45 162
Msa1012800 MtrunA17_Chr3g0106691 32.250 400 227 15 23 392 63 448 2.08e-43 159
Msa1012800 MtrunA17_Chr6g0470591 31.635 373 229 12 38 392 42 406 6.28e-43 157
Msa1012800 MtrunA17_Chr7g0253531 28.646 384 232 10 51 396 37 416 1.81e-39 147
Msa1012800 MtrunA17_Chr3g0106721 34.416 308 184 11 65 360 65 366 5.90e-39 146
Msa1012800 MtrunA17_Chr7g0253501 28.283 396 218 12 51 396 37 416 6.52e-39 146
Msa1012800 MtrunA17_Chr3g0106661 28.222 450 283 16 23 436 17 462 3.07e-38 144
Msa1012800 MtrunA17_Chr7g0270771 35.000 280 150 10 23 294 12 267 7.14e-38 138
Msa1012800 MtrunA17_Chr3g0106761 32.143 336 187 15 82 392 28 347 6.18e-36 136
Msa1012800 MtrunA17_Chr3g0123061 26.866 402 247 15 23 408 12 382 1.54e-34 133
Msa1012800 MtrunA17_Chr3g0106741 32.440 336 186 17 82 392 59 378 4.86e-34 132
Msa1012800 MtrunA17_Chr5g0442691 27.877 391 240 13 37 393 54 436 7.41e-33 129
Msa1012800 MtrunA17_Chr5g0442701 27.621 391 241 13 37 393 31 413 3.97e-32 127
Msa1012800 MtrunA17_Chr6g0471971 31.496 254 131 9 165 408 1 221 4.11e-32 121
Msa1012800 MtrunA17_Chr7g0252771 27.344 256 172 4 189 435 1 251 1.63e-30 118
Msa1012800 MtrunA17_Chr3g0134091 29.841 315 195 10 56 356 56 358 1.52e-29 119
Msa1012800 MtrunA17_Chr3g0134071 26.847 406 252 16 55 432 57 445 1.90e-27 114
Msa1012800 MtrunA17_Chr3g0106711 37.566 189 104 5 23 199 17 203 2.74e-27 109
Msa1012800 MtrunA17_Chr4g0053061 26.733 404 249 17 58 429 77 465 5.43e-27 112
Msa1012800 MtrunA17_Chr6g0471381 30.653 199 128 6 201 395 7 199 1.77e-26 107
Msa1012800 MtrunA17_Chr5g0442721 25.118 422 269 15 9 393 4 415 1.87e-26 111
Msa1012800 MtrunA17_Chr8g0359251 25.450 389 259 10 63 433 58 433 2.97e-26 110
Msa1012800 MtrunA17_Chr8g0374911 25.750 400 258 16 58 429 70 458 5.24e-26 109
Msa1012800 MtrunA17_Chr3g0134121 28.338 367 227 13 14 356 5 359 5.65e-26 110
Msa1012800 MtrunA17_Chr4g0053111 26.485 404 255 14 54 429 46 435 7.18e-26 109
Msa1012800 MtrunA17_Chr3g0134041 24.814 403 261 12 55 432 53 438 1.29e-25 108
Msa1012800 MtrunA17_Chr3g0125001 25.897 390 266 12 63 437 50 431 2.85e-25 107
Msa1012800 MtrunA17_Chr3g0095731 25.455 385 240 12 45 394 41 413 5.18e-25 107
Msa1012800 MtrunA17_Chr3g0097841 32.212 208 125 3 244 435 33 240 7.31e-25 102
Msa1012800 MtrunA17_Chr8g0374641 26.799 403 245 19 58 429 49 432 1.07e-24 105
Msa1012800 MtrunA17_Chr4g0010331 25.788 349 229 11 63 392 50 387 1.17e-24 105
Msa1012800 MtrunA17_Chr4g0053081 25.823 395 249 16 61 429 57 433 1.50e-24 105
Msa1012800 MtrunA17_Chr4g0010361 25.897 390 256 14 63 429 50 429 1.97e-24 105
Msa1012800 MtrunA17_Chr4g0010311 26.873 387 245 13 68 429 55 428 2.08e-24 104
Msa1012800 MtrunA17_Chr4g0004691 29.143 175 120 2 14 188 3 173 2.91e-24 99.4
Msa1012800 MtrunA17_Chr3g0095721 25.130 386 244 12 45 394 41 417 3.15e-24 104
Msa1012800 MtrunA17_Chr4g0053091 25.562 356 211 11 61 392 60 385 1.59e-23 102
Msa1012800 MtrunA17_Chr7g0273741 36.296 135 83 2 20 151 14 148 1.63e-23 96.3
Msa1012800 MtrunA17_Chr5g0408911 25.124 402 259 15 37 415 41 423 6.48e-23 100
Msa1012800 MtrunA17_Chr6g0471371 38.065 155 83 4 19 169 12 157 6.97e-23 95.1
Msa1012800 MtrunA17_Chr4g0010121 25.628 398 255 14 58 429 89 471 8.46e-23 100
Msa1012800 MtrunA17_Chr1g0199561 24.368 435 277 15 13 413 1 417 1.35e-22 99.8
Msa1012800 MtrunA17_Chr8g0354371 26.393 341 232 10 63 392 59 391 1.76e-22 99.4
Msa1012800 MtrunA17_Chr3g0134061 24.171 422 269 15 14 395 4 414 1.83e-22 99.4
Msa1012800 MtrunA17_Chr3g0098961 37.705 122 73 2 20 138 17 138 2.54e-22 93.6
Msa1012800 MtrunA17_Chr7g0274021 25.824 364 241 11 12 362 5 352 3.45e-22 98.6
Msa1012800 MtrunA17_Chr6g0467861 26.625 477 284 23 13 437 45 507 9.74e-22 97.4
Msa1012800 MtrunA17_Chr7g0224131 24.479 384 265 12 63 429 50 425 2.88e-21 95.5
Msa1012800 MtrunA17_Chr8g0376901 25.122 410 249 16 13 392 1 382 2.97e-21 95.5
Msa1012800 MtrunA17_Chr8g0361781 23.724 392 263 13 20 392 12 386 2.98e-21 95.5
Msa1012800 MtrunA17_Chr4g0010351 29.242 277 170 11 68 327 55 322 5.53e-21 94.0
Msa1012800 MtrunA17_Chr5g0436621 23.316 386 228 11 67 393 60 436 7.97e-21 94.7
Msa1012800 MtrunA17_Chr3g0113181 24.251 367 223 11 68 392 66 419 1.44e-20 94.0
Msa1012800 MtrunA17_Chr8g0376891 22.667 450 289 16 13 432 1 421 3.20e-20 92.8
Msa1012800 MtrunA17_Chr4g0010381 25.707 389 246 16 68 429 55 427 3.95e-20 92.4
Msa1012800 MtrunA17_Chr5g0438701 21.995 441 297 14 13 432 1 415 1.95e-19 90.1
Msa1012800 MtrunA17_Chr8g0361771 25.313 399 262 15 15 392 3 386 2.50e-19 89.7
Msa1012800 MtrunA17_Chr1g0165741 34.815 135 85 2 20 151 13 147 3.05e-19 84.0
Msa1012800 MtrunA17_Chr3g0134101 27.097 310 194 9 56 356 74 360 3.38e-19 89.7
Msa1012800 MtrunA17_Chr3g0134111 24.619 394 255 14 25 390 19 398 1.28e-18 87.8
Msa1012800 MtrunA17_Chr7g0219331 24.432 352 234 10 68 391 157 504 1.40e-18 88.2
Msa1012800 MtrunA17_Chr7g0219291 23.833 407 260 14 68 435 416 811 8.30e-18 86.3
Msa1012800 MtrunA17_Chr2g0323481 23.056 360 237 11 68 392 62 416 9.46e-18 85.1
Msa1012800 MtrunA17_Chr7g0219241 23.671 414 259 16 67 435 68 469 1.06e-17 85.1
Msa1012800 MtrunA17_Chr4g0004701 26.702 191 119 5 265 435 49 238 1.20e-17 82.0
Msa1012800 MtrunA17_Chr7g0219301 25.000 352 232 10 68 391 64 411 2.06e-17 85.1
Msa1012800 MtrunA17_Chr2g0323421 24.650 357 234 9 68 392 111 464 8.23e-17 82.4
Msa1012800 MtrunA17_Chr7g0252761 32.374 139 91 3 20 156 20 157 4.28e-16 75.9
Msa1012800 MtrunA17_Chr8g0378151 29.609 179 123 2 24 201 20 196 1.65e-15 78.2
Msa1012800 MtrunA17_Chr3g0097851 38.202 89 55 0 265 353 26 114 3.30e-15 71.6
Msa1012800 MtrunA17_Chr2g0323511 24.064 374 238 14 67 399 74 442 1.05e-14 75.9
Msa1012800 MtrunA17_Chr7g0219181 22.837 416 263 15 67 435 67 471 1.11e-14 75.9
Msa1012800 MtrunA17_Chr6g0455341 24.286 350 232 12 68 391 70 412 1.77e-14 75.1
Msa1012800 MtrunA17_Chr1g0165731 28.319 113 76 3 165 276 1 109 1.94e-14 69.3
Msa1012800 MtrunA17_Chr6g0454761 22.006 309 214 9 150 435 634 938 9.34e-14 73.6
Msa1012800 MtrunA17_Chr6g0454761 23.134 268 172 8 150 391 147 406 5.74e-13 71.2
Msa1012800 MtrunA17_Chr7g0273701 33.028 109 70 2 292 397 1 109 1.41e-13 68.9
Msa1012800 MtrunA17_Chr2g0311411 31.447 159 95 5 13 170 3 148 1.66e-13 67.8
Msa1012800 MtrunA17_Chr8g0353421 34.906 106 66 2 21 123 14 119 2.88e-13 66.6
Msa1012800 MtrunA17_Chr2g0323471 21.569 357 240 10 67 391 81 429 6.83e-13 70.5
Msa1012800 MtrunA17_Chr6g0471891 26.061 165 92 5 234 396 1 137 1.12e-12 67.4
Msa1012800 MtrunA17_Chr1g0148851 22.189 338 212 12 48 359 39 351 3.71e-12 67.8
Msa1012800 MtrunA17_Chr8g0339641 22.520 373 242 11 67 397 61 428 4.72e-12 67.8
Msa1012800 MtrunA17_Chr2g0302471 28.947 152 97 5 15 165 4 145 5.87e-12 63.2
Msa1012800 MtrunA17_Chr3g0132831 23.629 237 160 7 48 275 46 270 1.48e-11 65.9
Msa1012800 MtrunA17_Chr3g0097831 36.986 73 44 1 24 94 10 82 3.09e-11 59.3
Msa1012800 MtrunA17_Chr7g0219121 23.256 301 174 12 62 315 61 351 3.66e-11 65.1
Msa1012800 MtrunA17_Chr3g0106631 32.692 156 97 6 151 302 2 153 4.44e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012800 AT5G41040.1 73.441 433 109 4 11 437 25 457 0.0 672
Msa1012800 AT5G41040.2 73.441 433 109 4 11 437 9 441 0.0 672
Msa1012800 AT5G63560.1 61.520 421 152 4 20 437 13 426 0.0 529
Msa1012800 AT3G48720.1 55.847 419 181 3 21 437 14 430 1.08e-177 503
Msa1012800 AT5G48930.1 34.174 436 268 7 12 435 2 430 6.85e-82 259
Msa1012800 AT1G65450.1 36.028 433 253 12 20 436 22 446 1.90e-77 248
Msa1012800 AT1G03390.1 35.747 442 264 14 13 437 19 457 2.96e-77 248
Msa1012800 AT1G27620.1 33.724 427 260 9 19 435 12 425 9.28e-74 238
Msa1012800 AT5G17540.1 32.637 383 247 7 20 395 13 391 2.14e-64 214
Msa1012800 AT3G03480.1 34.987 383 231 10 23 395 26 400 8.19e-63 210
Msa1012800 AT2G19070.1 32.000 400 238 11 26 396 14 408 3.48e-57 195
Msa1012800 AT1G28680.1 32.258 434 270 12 20 435 13 440 4.08e-57 195
Msa1012800 AT5G57840.1 33.079 393 232 9 20 390 7 390 6.24e-57 194
Msa1012800 AT2G40230.1 31.019 432 270 11 20 435 9 428 1.71e-54 187
Msa1012800 AT1G28680.2 32.565 347 222 8 20 360 13 353 2.30e-50 176
Msa1012800 AT4G31910.1 30.189 424 259 13 31 423 26 443 4.61e-48 171
Msa1012800 AT5G07080.1 30.455 440 268 17 19 433 17 443 1.22e-45 164
Msa1012800 AT1G65450.3 32.639 288 176 7 161 436 1 282 3.78e-45 159
Msa1012800 AT3G47170.1 29.241 448 282 13 19 433 15 460 3.01e-42 155
Msa1012800 AT2G25150.1 30.995 442 264 14 23 435 20 449 2.04e-41 153
Msa1012800 AT3G62160.1 29.668 391 237 12 22 397 11 378 3.36e-41 152
Msa1012800 AT2G23510.1 29.120 443 271 16 23 436 20 448 3.94e-38 144
Msa1012800 AT1G78990.1 27.295 403 244 14 48 414 46 435 1.81e-34 134
Msa1012800 AT1G24430.1 27.818 417 254 17 35 432 27 415 3.74e-31 124
Msa1012800 AT1G31490.1 27.877 391 248 15 37 410 29 402 7.68e-30 120
Msa1012800 AT1G32910.1 25.068 367 246 11 46 393 44 400 1.94e-29 120
Msa1012800 AT5G16410.1 26.823 384 243 14 37 400 61 426 1.36e-27 115
Msa1012800 AT5G07870.1 28.754 313 196 9 62 356 66 369 1.27e-26 112
Msa1012800 AT5G42830.1 29.014 355 221 12 20 356 16 357 1.84e-26 111
Msa1012800 AT2G39980.1 26.190 378 216 11 68 392 62 429 1.35e-25 109
Msa1012800 AT5G23940.1 27.696 408 255 14 51 429 43 439 6.28e-24 104
Msa1012800 AT3G29670.1 24.112 394 271 12 48 419 42 429 1.14e-23 103
Msa1012800 AT5G07860.1 27.508 309 195 8 62 356 66 359 1.19e-23 103
Msa1012800 AT3G50270.1 26.463 393 250 17 68 434 62 441 2.35e-23 102
Msa1012800 AT4G15390.1 23.853 436 285 16 23 432 15 429 4.16e-23 101
Msa1012800 AT4G15390.2 23.853 436 285 16 23 432 15 429 4.16e-23 101
Msa1012800 AT5G61160.1 25.352 355 234 12 68 399 64 410 6.90e-23 100
Msa1012800 AT3G29635.1 24.289 387 267 11 71 436 70 451 1.11e-22 100
Msa1012800 AT1G24420.2 24.658 365 243 10 79 432 76 419 2.67e-22 99.0
Msa1012800 AT1G24420.1 24.658 365 243 10 79 432 76 419 2.67e-22 99.0
Msa1012800 AT3G30280.1 24.766 428 274 20 23 424 13 418 2.08e-20 93.6
Msa1012800 AT5G47950.1 24.439 401 254 17 48 432 42 409 3.49e-20 92.8
Msa1012800 AT3G50280.1 22.680 388 269 14 68 434 59 436 2.64e-19 90.1
Msa1012800 AT5G38130.1 24.251 367 250 12 71 419 82 438 1.86e-18 87.8
Msa1012800 AT5G23970.1 23.472 409 259 12 37 421 24 402 2.65e-18 87.0
Msa1012800 AT3G29590.1 25.220 341 223 13 76 392 69 401 4.40e-18 86.7
Msa1012800 AT1G65450.2 45.455 110 55 4 20 125 22 130 1.37e-17 80.5
Msa1012800 AT4G15400.1 24.356 427 288 17 23 433 12 419 2.08e-17 84.3
Msa1012800 AT5G67150.1 22.973 370 238 13 68 407 61 413 1.18e-16 82.4
Msa1012800 AT5G07850.1 25.364 343 216 14 20 343 27 348 1.34e-16 82.0
Msa1012800 AT3G29680.1 22.481 387 276 8 68 435 62 443 3.16e-16 80.9
Msa1012800 AT3G50300.1 24.064 374 250 13 68 419 59 420 8.60e-16 79.7
Msa1012800 AT5G39090.1 23.016 378 264 11 78 436 75 444 2.69e-14 75.1
Msa1012800 AT1G03495.1 27.778 288 168 15 68 322 66 346 1.17e-13 72.4
Msa1012800 AT4G29250.1 23.077 429 282 17 34 433 33 442 1.44e-13 72.8
Msa1012800 AT3G50280.2 22.295 305 217 10 142 434 10 306 4.65e-13 70.1
Msa1012800 AT1G03940.1 24.510 408 257 17 68 436 66 461 4.37e-12 68.2
Msa1012800 AT3G50290.1 24.906 265 183 7 137 389 9 269 1.63e-11 65.1
Msa1012800 AT5G39050.1 21.725 313 219 6 150 436 152 464 5.02e-11 65.1

Find 96 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTCCAAAAGGGTATTT+TGG 0.109330 7_1:+18233498 Msa1012800:CDS
AGAAGCTTTGTTTCTTGTTC+TGG 0.223449 7_1:-18233441 None:intergenic
GTCTGGACCGGTTTCCTTGC+CGG 0.230469 7_1:+18233764 Msa1012800:CDS
CTTCAATGTCAGCAAATTCT+TGG 0.238280 7_1:-18233227 None:intergenic
GAAAATTCTAATTATCAAAA+TGG 0.257291 7_1:+18231620 Msa1012800:CDS
CACCATTTCATCTTCATATA+AGG 0.260329 7_1:-18233268 None:intergenic
TGCTTCACACAAATATGATA+TGG 0.268225 7_1:-18231432 None:intergenic
CCAAGATTTAATGCAGATAT+AGG 0.271308 7_1:+18233878 Msa1012800:CDS
CCCTTTCATACCACCGATTT+CGG 0.292690 7_1:+18233723 Msa1012800:CDS
CACTGTATGTTTGATGGAAT+TGG 0.294988 7_1:+18233084 Msa1012800:CDS
AATTGTTCAATGGAAGAAAT+TGG 0.299341 7_1:+18231947 Msa1012800:CDS
CCTTTCTTTGTTTCTTCAGA+TGG 0.304433 7_1:-18231692 None:intergenic
AACAAGAGCTAGGCCATCTT+TGG 0.319090 7_1:+18233665 Msa1012800:CDS
CAAGTGTTGGTTCACTTGTT+AGG 0.323483 7_1:-18231664 None:intergenic
AGTGCTGTTTATGAATTTAT+TGG 0.329556 7_1:+18233977 Msa1012800:three_prime_UTR
AGAAGCATTAATGTGCTTCT+AGG 0.333464 7_1:+18233828 Msa1012800:CDS
TGGTGCAAATGCTCTATCTT+CGG 0.344041 7_1:-18233207 None:intergenic
GTTCATTATTACCCTCTTGC+TGG 0.346873 7_1:+18231845 Msa1012800:CDS
CCATTCCCAAAATACCCTTT+TGG 0.354945 7_1:-18233504 None:intergenic
ATATTTGTGTGAAGCAATTC+AGG 0.371213 7_1:+18231439 Msa1012800:five_prime_UTR
GGTGCAAATGCTCTATCTTC+GGG 0.375653 7_1:-18233206 None:intergenic
CGATTTCGGTTGGGGAGAAC+CGG 0.379270 7_1:+18233737 Msa1012800:CDS
GAATGCTTGTGAAGTGATTA+AGG 0.383599 7_1:+18231802 Msa1012800:CDS
CCTATATCTGCATTAAATCT+TGG 0.386363 7_1:-18233878 None:intergenic
TCATACCACCGATTTCGGTT+GGG 0.393719 7_1:+18233728 Msa1012800:CDS
TATTCTTCAGATGCCTCCTT+TGG 0.394177 7_1:+18232036 Msa1012800:CDS
AAGTGCTTTCAGCATTTGTT+TGG 0.399533 7_1:+18233388 Msa1012800:CDS
TCCTTCTCCGGCAAGGAAAC+CGG 0.400213 7_1:-18233771 None:intergenic
GATGCCTCCTTTGGTTGCTC+AGG 0.401248 7_1:+18232045 Msa1012800:CDS
AGTATGCTTCGGTCGAGAAC+TGG 0.410989 7_1:-18233168 None:intergenic
CGGTTCTCCCCAACCGAAAT+CGG 0.413358 7_1:-18233736 None:intergenic
TGGGGAGAACCGGTTCTGTC+TGG 0.419323 7_1:+18233747 Msa1012800:CDS
TTCATATAAGGTACTAGTGT+TGG 0.419653 7_1:-18233256 None:intergenic
TTCATACCACCGATTTCGGT+TGG 0.423100 7_1:+18233727 Msa1012800:CDS
TACCTTATATGAAGATGAAA+TGG 0.425519 7_1:+18233266 Msa1012800:CDS
AACAAAATCACTTCCTTCTC+CGG 0.435908 7_1:-18233783 None:intergenic
CATACCACCGATTTCGGTTG+GGG 0.437822 7_1:+18233729 Msa1012800:CDS
TCCAAGGACTCTTGGTATGT+TGG 0.438373 7_1:+18231988 Msa1012800:CDS
TTTGAACCAAAACTTCCAAA+AGG 0.445633 7_1:+18233489 Msa1012800:CDS
TTCTTTGTTTCTTCAGATGG+TGG 0.446811 7_1:-18231689 None:intergenic
AACCTTCACCGTATACGAAA+AGG 0.447710 7_1:-18233577 None:intergenic
TGCGCACCTTTAGTATGCTT+CGG 0.452621 7_1:-18233179 None:intergenic
GCTTCACACAAATATGATAT+GGG 0.459751 7_1:-18231431 None:intergenic
TGAAGAATATGTTTAGCATC+AGG 0.461984 7_1:-18232022 None:intergenic
AAACCTGATCCAAGGACTCT+TGG 0.464374 7_1:+18231980 Msa1012800:CDS
ATGAATCACTGTATGTTTGA+TGG 0.464465 7_1:+18233078 Msa1012800:CDS
ACAAATGCTGTTTGTAAAGC+AGG 0.466739 7_1:+18233537 Msa1012800:CDS
ATACCAAGAGTCCTTGGATC+AGG 0.478213 7_1:-18231983 None:intergenic
ACCAACATACCAAGAGTCCT+TGG 0.479611 7_1:-18231989 None:intergenic
GGCTGAAGCTAATTGTTCAA+TGG 0.480046 7_1:+18231937 Msa1012800:CDS
CTATGGAGTTTGTGAACTCA+TGG 0.489466 7_1:+18233109 Msa1012800:CDS
TCAGATGGTGGAACAAGTGT+TGG 0.489688 7_1:-18231677 None:intergenic
ACCGGTTTCCTTGCCGGAGA+AGG 0.494266 7_1:+18233770 Msa1012800:CDS
ACCGAAATCGGTGGTATGAA+AGG 0.500259 7_1:-18233724 None:intergenic
TTGGTAGTAAGCAATAACTA+AGG 0.501457 7_1:+18233996 Msa1012800:three_prime_UTR
AAAACCTCCACATTTGAACT+TGG 0.504811 7_1:-18233040 None:intergenic
CTCAGAGGGTAAACTGATTG+TGG 0.510531 7_1:+18231883 Msa1012800:CDS
ACCTTCACCGTATACGAAAA+GGG 0.526148 7_1:-18233576 None:intergenic
AAGATCTTCATGACAGGAGC+AGG 0.527288 7_1:-18233855 None:intergenic
TTGAACCAAAACTTCCAAAA+GGG 0.529877 7_1:+18233490 Msa1012800:CDS
CCGAAATCGGTGGTATGAAA+GGG 0.531154 7_1:-18233723 None:intergenic
TCCTCTCTTGACCATGTGAA+AGG 0.539507 7_1:-18233806 None:intergenic
GTTTGATGGAATTGGAGCTA+TGG 0.548532 7_1:+18233092 Msa1012800:CDS
TAATCAAGAAGTGTTTGAGA+TGG 0.549573 7_1:+18231598 Msa1012800:exon
GAAACCGGTCCAGACAGAAC+CGG 0.551440 7_1:-18233756 None:intergenic
AAAAGTGTACAAGCCAAAGA+TGG 0.555885 7_1:-18233678 None:intergenic
AGAACCGGTTCTGTCTGGAC+CGG 0.557075 7_1:+18233752 Msa1012800:CDS
TATTCAAGATGCAATCAAGA+TGG 0.561804 7_1:+18233599 Msa1012800:CDS
CCATCTGAAGAAACAAAGAA+AGG 0.565357 7_1:+18231692 Msa1012800:CDS
AGAACTGGAGGGACGGAGAG+TGG 0.567166 7_1:-18233153 None:intergenic
TATGGAGTTTGTGAACTCAT+GGG 0.568942 7_1:+18233110 Msa1012800:CDS
TCTTGGAAGATCTTCATGAC+AGG 0.573252 7_1:-18233861 None:intergenic
TCCTTTCACATGGTCAAGAG+AGG 0.581268 7_1:+18233805 Msa1012800:CDS
AAACTGATTGTGGATTGTAC+AGG 0.586136 7_1:+18231893 Msa1012800:CDS
AGATTAAGTATAAGCTCAGA+GGG 0.587672 7_1:+18231869 Msa1012800:CDS
TCTCGACCGAAGCATACTAA+AGG 0.588752 7_1:+18233173 Msa1012800:CDS
CAGCTGACCAAGTTCAAATG+TGG 0.590914 7_1:+18233033 Msa1012800:intron
ATGCTTCGGTCGAGAACTGG+AGG 0.593369 7_1:-18233165 None:intergenic
GTGCAAATGCTCTATCTTCG+GGG 0.597277 7_1:-18233205 None:intergenic
AATCACTTCCTTCTCCGGCA+AGG 0.599797 7_1:-18233778 None:intergenic
CTGACCAAGTTCAAATGTGG+AGG 0.605830 7_1:+18233036 Msa1012800:CDS
ATGGAGTTTGTGAACTCATG+GGG 0.608694 7_1:+18233111 Msa1012800:CDS
ATACTTAATCTACCAGCAAG+AGG 0.612226 7_1:-18231857 None:intergenic
TGCAAATGCTCTATCTTCGG+GGG 0.613923 7_1:-18233204 None:intergenic
ATATTACAAAACCTGATCCA+AGG 0.621561 7_1:+18231972 Msa1012800:CDS
CATACCTGAGCAACCAAAGG+AGG 0.626730 7_1:-18232049 None:intergenic
TCGGTCGAGAACTGGAGGGA+CGG 0.629795 7_1:-18233160 None:intergenic
TACTTAATCTACCAGCAAGA+GGG 0.630868 7_1:-18231856 None:intergenic
AAACATACCTGAGCAACCAA+AGG 0.647608 7_1:-18232052 None:intergenic
TAGATTAAGTATAAGCTCAG+AGG 0.659227 7_1:+18231868 Msa1012800:CDS
AAAGCTTTAGAAGATGAAGG+TGG 0.665451 7_1:+18233339 Msa1012800:CDS
TTCTCCCCAACCGAAATCGG+TGG 0.671335 7_1:-18233733 None:intergenic
TGGAGTTTGTGAACTCATGG+GGG 0.682291 7_1:+18233112 Msa1012800:CDS
ATTGTGGATTGTACAGGAGA+AGG 0.683782 7_1:+18231899 Msa1012800:CDS
TGCTTCGGTCGAGAACTGGA+GGG 0.687735 7_1:-18233164 None:intergenic
GGAGTTTGTGAACTCATGGG+GGG 0.709273 7_1:+18233113 Msa1012800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAAAAAAATTAGTTA+AGG + chr7_1:18232413-18232432 Msa1012800:intron 10.0%
!! GATTAAAAAAAATTAGTTAA+GGG + chr7_1:18232414-18232433 Msa1012800:intron 10.0%
!!! TTGTGTTATTTTTTATTATA+TGG + chr7_1:18233925-18233944 Msa1012800:three_prime_UTR 10.0%
!! GAAAATTCTAATTATCAAAA+TGG + chr7_1:18231620-18231639 Msa1012800:CDS 15.0%
!!! TCCTAAACTTTTAAATAATT+TGG + chr7_1:18232300-18232319 Msa1012800:intron 15.0%
!! TCCAAATTATTTAAAAGTTT+AGG - chr7_1:18232304-18232323 None:intergenic 15.0%
!!! AGTTTTTGCTAAAATTATAA+TGG + chr7_1:18232497-18232516 Msa1012800:intron 15.0%
!!! CTATTTGAGAAATTTTAAAT+AGG - chr7_1:18232621-18232640 None:intergenic 15.0%
!! ATTTATGTATGATAAACATA+AGG + chr7_1:18232785-18232804 Msa1012800:intron 15.0%
!! AATGTTATGTTTGAAGATTA+AGG - chr7_1:18231534-18231553 None:intergenic 20.0%
!!! TTTTTGTTTGTTTGTAAAAC+AGG + chr7_1:18231570-18231589 Msa1012800:intron 20.0%
!!! CTTTTAAATAATTTGGACTT+TGG + chr7_1:18232307-18232326 Msa1012800:intron 20.0%
!! TTTGATTATTGACATAGAAA+CGG - chr7_1:18232885-18232904 None:intergenic 20.0%
!!! TTTTTGAAATATAGTTGATG+CGG + chr7_1:18232965-18232984 Msa1012800:intron 20.0%
! AATTGTTCAATGGAAGAAAT+TGG + chr7_1:18231947-18231966 Msa1012800:CDS 25.0%
! AAAAATATTTCGCACATGTT+TGG - chr7_1:18232555-18232574 None:intergenic 25.0%
! CAGTGACAAAAAATAAATGA+AGG - chr7_1:18232666-18232685 None:intergenic 25.0%
! CATACATAAATTCCTATGAA+TGG - chr7_1:18232776-18232795 None:intergenic 25.0%
! TCATATTGCAACTATAATTG+TGG - chr7_1:18232991-18233010 None:intergenic 25.0%
! TACCTTATATGAAGATGAAA+TGG + chr7_1:18233266-18233285 Msa1012800:CDS 25.0%
!!! TTCAATTCTTTTAGTTTCTC+GGG - chr7_1:18233315-18233334 None:intergenic 25.0%
!!! CTTCAATTCTTTTAGTTTCT+CGG - chr7_1:18233316-18233335 None:intergenic 25.0%
!!! AAAAAAGCTTTAGAAGATGA+AGG + chr7_1:18233336-18233355 Msa1012800:CDS 25.0%
!!! AGTGCTGTTTATGAATTTAT+TGG + chr7_1:18233977-18233996 Msa1012800:three_prime_UTR 25.0%
GCTTCACACAAATATGATAT+GGG - chr7_1:18231434-18231453 None:intergenic 30.0%
TGCTTCACACAAATATGATA+TGG - chr7_1:18231435-18231454 None:intergenic 30.0%
ATATTTGTGTGAAGCAATTC+AGG + chr7_1:18231439-18231458 Msa1012800:five_prime_UTR 30.0%
!! TAATCAAGAAGTGTTTGAGA+TGG + chr7_1:18231598-18231617 Msa1012800:exon 30.0%
!!! TGTTTTGATCAAGGTTTGAT+AGG - chr7_1:18231727-18231746 None:intergenic 30.0%
TTGCTTCAAAAATGAAGAGA+AGG + chr7_1:18231772-18231791 Msa1012800:CDS 30.0%
TGCTTCAAAAATGAAGAGAA+GGG + chr7_1:18231773-18231792 Msa1012800:CDS 30.0%
TAGATTAAGTATAAGCTCAG+AGG + chr7_1:18231868-18231887 Msa1012800:CDS 30.0%
AGATTAAGTATAAGCTCAGA+GGG + chr7_1:18231869-18231888 Msa1012800:CDS 30.0%
ATATTACAAAACCTGATCCA+AGG + chr7_1:18231972-18231991 Msa1012800:CDS 30.0%
TGAAGAATATGTTTAGCATC+AGG - chr7_1:18232025-18232044 None:intergenic 30.0%
!!! GTTACTAGTCTTTTTGTAGT+TGG + chr7_1:18232076-18232095 Msa1012800:intron 30.0%
! TCTTTTTGTAGTTGGATTTC+TGG + chr7_1:18232084-18232103 Msa1012800:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG - chr7_1:18232180-18232199 None:intergenic 30.0%
TCAGAGGTTACTTGTAATTT+CGG + chr7_1:18232276-18232295 Msa1012800:intron 30.0%
ATGAATCACTGTATGTTTGA+TGG + chr7_1:18233078-18233097 Msa1012800:CDS 30.0%
! TTCATATAAGGTACTAGTGT+TGG - chr7_1:18233259-18233278 None:intergenic 30.0%
CACCATTTCATCTTCATATA+AGG - chr7_1:18233271-18233290 None:intergenic 30.0%
TTTGAACCAAAACTTCCAAA+AGG + chr7_1:18233489-18233508 Msa1012800:CDS 30.0%
TTGAACCAAAACTTCCAAAA+GGG + chr7_1:18233490-18233509 Msa1012800:CDS 30.0%
!! AAATACCCTTTTGGAAGTTT+TGG - chr7_1:18233498-18233517 None:intergenic 30.0%
!!! AAACTTCCAAAAGGGTATTT+TGG + chr7_1:18233498-18233517 Msa1012800:CDS 30.0%
!!! AACTTCCAAAAGGGTATTTT+GGG + chr7_1:18233499-18233518 Msa1012800:CDS 30.0%
TATTCAAGATGCAATCAAGA+TGG + chr7_1:18233599-18233618 Msa1012800:CDS 30.0%
!! ATCAGCTATCGATTATTTTG+AGG + chr7_1:18233641-18233660 Msa1012800:CDS 30.0%
CCTATATCTGCATTAAATCT+TGG - chr7_1:18233881-18233900 None:intergenic 30.0%
CCAAGATTTAATGCAGATAT+AGG + chr7_1:18233878-18233897 Msa1012800:CDS 30.0%
! TTGGTAGTAAGCAATAACTA+AGG + chr7_1:18233996-18234015 Msa1012800:three_prime_UTR 30.0%
GCAATGTTGAAAATGTCACA+TGG - chr7_1:18231496-18231515 None:intergenic 35.0%
! TTCTTTGTTTCTTCAGATGG+TGG - chr7_1:18231692-18231711 None:intergenic 35.0%
! CCTTTCTTTGTTTCTTCAGA+TGG - chr7_1:18231695-18231714 None:intergenic 35.0%
CCATCTGAAGAAACAAAGAA+AGG + chr7_1:18231692-18231711 Msa1012800:CDS 35.0%
!!! TCACAGCAATGTTTTGATCA+AGG - chr7_1:18231736-18231755 None:intergenic 35.0%
GCTTCAAAAATGAAGAGAAG+GGG + chr7_1:18231774-18231793 Msa1012800:CDS 35.0%
GAATGCTTGTGAAGTGATTA+AGG + chr7_1:18231802-18231821 Msa1012800:CDS 35.0%
TACTTAATCTACCAGCAAGA+GGG - chr7_1:18231859-18231878 None:intergenic 35.0%
ATACTTAATCTACCAGCAAG+AGG - chr7_1:18231860-18231879 None:intergenic 35.0%
! AAACTGATTGTGGATTGTAC+AGG + chr7_1:18231893-18231912 Msa1012800:CDS 35.0%
TGTATTCATAGATGTCGTGT+CGG + chr7_1:18232216-18232235 Msa1012800:intron 35.0%
TCAAGTGTATCTTTGATGAG+TGG + chr7_1:18232443-18232462 Msa1012800:intron 35.0%
TAGTTGCAATATGATCACTG+AGG + chr7_1:18232997-18233016 Msa1012800:intron 35.0%
AAAACCTCCACATTTGAACT+TGG - chr7_1:18233043-18233062 None:intergenic 35.0%
! AAATGTGGAGGTTTTTCTCT+TGG + chr7_1:18233048-18233067 Msa1012800:CDS 35.0%
CACTGTATGTTTGATGGAAT+TGG + chr7_1:18233084-18233103 Msa1012800:CDS 35.0%
TATGGAGTTTGTGAACTCAT+GGG + chr7_1:18233110-18233129 Msa1012800:CDS 35.0%
CTTCAATGTCAGCAAATTCT+TGG - chr7_1:18233230-18233249 None:intergenic 35.0%
!! AAAGCTTTAGAAGATGAAGG+TGG + chr7_1:18233339-18233358 Msa1012800:CDS 35.0%
AAGTGCTTTCAGCATTTGTT+TGG + chr7_1:18233388-18233407 Msa1012800:CDS 35.0%
!! AGAAGCTTTGTTTCTTGTTC+TGG - chr7_1:18233444-18233463 None:intergenic 35.0%
!!! AAGCTTCTTTTTGCTGTTGA+TGG + chr7_1:18233456-18233475 Msa1012800:CDS 35.0%
!!! TTCTTTTTGCTGTTGATGGA+AGG + chr7_1:18233460-18233479 Msa1012800:CDS 35.0%
!!! TCTTTTTGCTGTTGATGGAA+GGG + chr7_1:18233461-18233480 Msa1012800:CDS 35.0%
! ACAAATGCTGTTTGTAAAGC+AGG + chr7_1:18233537-18233556 Msa1012800:CDS 35.0%
!!! ATTTTGAGGTAACAAGAGCT+AGG + chr7_1:18233655-18233674 Msa1012800:CDS 35.0%
! AAAAGTGTACAAGCCAAAGA+TGG - chr7_1:18233681-18233700 None:intergenic 35.0%
! GTACACTTTTGATCACAACT+TGG + chr7_1:18233691-18233710 Msa1012800:CDS 35.0%
! TTTTGATCACAACTTGGTCT+AGG + chr7_1:18233697-18233716 Msa1012800:CDS 35.0%
AACAAAATCACTTCCTTCTC+CGG - chr7_1:18233786-18233805 None:intergenic 35.0%
! GTGATTTTGTTCCTTTCACA+TGG + chr7_1:18233795-18233814 Msa1012800:CDS 35.0%
!! AGAAGCATTAATGTGCTTCT+AGG + chr7_1:18233828-18233847 Msa1012800:CDS 35.0%
!! CAAGTGTTGGTTCACTTGTT+AGG - chr7_1:18231667-18231686 None:intergenic 40.0%
GTTCATTATTACCCTCTTGC+TGG + chr7_1:18231845-18231864 Msa1012800:CDS 40.0%
! ATTGTGGATTGTACAGGAGA+AGG + chr7_1:18231899-18231918 Msa1012800:CDS 40.0%
!!! AGAAGGTGCTCTTTTTGTTG+AGG + chr7_1:18231916-18231935 Msa1012800:CDS 40.0%
GGCTGAAGCTAATTGTTCAA+TGG + chr7_1:18231937-18231956 Msa1012800:CDS 40.0%
TATTCTTCAGATGCCTCCTT+TGG + chr7_1:18232036-18232055 Msa1012800:CDS 40.0%
AAACATACCTGAGCAACCAA+AGG - chr7_1:18232055-18232074 None:intergenic 40.0%
ATGAAGCGCATACACAAACA+CGG + chr7_1:18232125-18232144 Msa1012800:intron 40.0%
! TATTATCCGTGTCGGTGTAT+CGG - chr7_1:18232172-18232191 None:intergenic 40.0%
!! TTCTCAGATTTGAGTTGTCC+CGG - chr7_1:18232245-18232264 None:intergenic 40.0%
!! TACAAGTAACCTCTGAAGCA+TGG - chr7_1:18232272-18232291 None:intergenic 40.0%
GCATTTCTCAAGCCATTCAT+AGG + chr7_1:18232761-18232780 Msa1012800:intron 40.0%
GTTTGATGGAATTGGAGCTA+TGG + chr7_1:18233092-18233111 Msa1012800:CDS 40.0%
CTATGGAGTTTGTGAACTCA+TGG + chr7_1:18233109-18233128 Msa1012800:CDS 40.0%
ATGGAGTTTGTGAACTCATG+GGG + chr7_1:18233111-18233130 Msa1012800:CDS 40.0%
TGGTGCAAATGCTCTATCTT+CGG - chr7_1:18233210-18233229 None:intergenic 40.0%
! CCATTCCCAAAATACCCTTT+TGG - chr7_1:18233507-18233526 None:intergenic 40.0%
!!! CCAAAAGGGTATTTTGGGAA+TGG + chr7_1:18233504-18233523 Msa1012800:CDS 40.0%
! GAACAAGCCCTTTTCGTATA+CGG + chr7_1:18233569-18233588 Msa1012800:CDS 40.0%
ACCTTCACCGTATACGAAAA+GGG - chr7_1:18233579-18233598 None:intergenic 40.0%
AACCTTCACCGTATACGAAA+AGG - chr7_1:18233580-18233599 None:intergenic 40.0%
TCTTGGAAGATCTTCATGAC+AGG - chr7_1:18233864-18233883 None:intergenic 40.0%
!! TCAGATGGTGGAACAAGTGT+TGG - chr7_1:18231680-18231699 None:intergenic 45.0%
CTCAGAGGGTAAACTGATTG+TGG + chr7_1:18231883-18231902 Msa1012800:CDS 45.0%
AAACCTGATCCAAGGACTCT+TGG + chr7_1:18231980-18231999 Msa1012800:CDS 45.0%
ATACCAAGAGTCCTTGGATC+AGG - chr7_1:18231986-18232005 None:intergenic 45.0%
TCCAAGGACTCTTGGTATGT+TGG + chr7_1:18231988-18232007 Msa1012800:CDS 45.0%
ACCAACATACCAAGAGTCCT+TGG - chr7_1:18231992-18232011 None:intergenic 45.0%
GCATACACAAACACGGACAT+TGG + chr7_1:18232132-18232151 Msa1012800:intron 45.0%
CAGCTGACCAAGTTCAAATG+TGG + chr7_1:18233033-18233052 Msa1012800:intron 45.0%
CTGACCAAGTTCAAATGTGG+AGG + chr7_1:18233036-18233055 Msa1012800:CDS 45.0%
TGGAGTTTGTGAACTCATGG+GGG + chr7_1:18233112-18233131 Msa1012800:CDS 45.0%
TCTCGACCGAAGCATACTAA+AGG + chr7_1:18233173-18233192 Msa1012800:CDS 45.0%
TGCGCACCTTTAGTATGCTT+CGG - chr7_1:18233182-18233201 None:intergenic 45.0%
TGCAAATGCTCTATCTTCGG+GGG - chr7_1:18233207-18233226 None:intergenic 45.0%
GTGCAAATGCTCTATCTTCG+GGG - chr7_1:18233208-18233227 None:intergenic 45.0%
GGTGCAAATGCTCTATCTTC+GGG - chr7_1:18233209-18233228 None:intergenic 45.0%
AACAAGAGCTAGGCCATCTT+TGG + chr7_1:18233665-18233684 Msa1012800:CDS 45.0%
CCGAAATCGGTGGTATGAAA+GGG - chr7_1:18233726-18233745 None:intergenic 45.0%
!! CCCTTTCATACCACCGATTT+CGG + chr7_1:18233723-18233742 Msa1012800:CDS 45.0%
ACCGAAATCGGTGGTATGAA+AGG - chr7_1:18233727-18233746 None:intergenic 45.0%
!! TTCATACCACCGATTTCGGT+TGG + chr7_1:18233727-18233746 Msa1012800:CDS 45.0%
!! TCATACCACCGATTTCGGTT+GGG + chr7_1:18233728-18233747 Msa1012800:CDS 45.0%
TCCTTTCACATGGTCAAGAG+AGG + chr7_1:18233805-18233824 Msa1012800:CDS 45.0%
TCCTCTCTTGACCATGTGAA+AGG - chr7_1:18233809-18233828 None:intergenic 45.0%
AAGATCTTCATGACAGGAGC+AGG - chr7_1:18233858-18233877 None:intergenic 45.0%
CATACCTGAGCAACCAAAGG+AGG - chr7_1:18232052-18232071 None:intergenic 50.0%
! ATAGATGTCGTGTCGGTGTC+CGG + chr7_1:18232223-18232242 Msa1012800:intron 50.0%
!! GAGAAGTGTCCATGCTTCAG+AGG + chr7_1:18232260-18232279 Msa1012800:intron 50.0%
GGAGTTTGTGAACTCATGGG+GGG + chr7_1:18233113-18233132 Msa1012800:CDS 50.0%
AGTATGCTTCGGTCGAGAAC+TGG - chr7_1:18233171-18233190 None:intergenic 50.0%
! GCCCTTTTCGTATACGGTGA+AGG + chr7_1:18233575-18233594 Msa1012800:CDS 50.0%
!! CATACCACCGATTTCGGTTG+GGG + chr7_1:18233729-18233748 Msa1012800:CDS 50.0%
AATCACTTCCTTCTCCGGCA+AGG - chr7_1:18233781-18233800 None:intergenic 50.0%
GATGCCTCCTTTGGTTGCTC+AGG + chr7_1:18232045-18232064 Msa1012800:CDS 55.0%
CACGGACATTGGACACGACA+CGG + chr7_1:18232143-18232162 Msa1012800:intron 55.0%
! TAGATGTCGTGTCGGTGTCC+GGG + chr7_1:18232224-18232243 Msa1012800:intron 55.0%
TCATGGGGGGAACTAGCAAG+AGG + chr7_1:18233126-18233145 Msa1012800:CDS 55.0%
TGCTTCGGTCGAGAACTGGA+GGG - chr7_1:18233167-18233186 None:intergenic 55.0%
ATGCTTCGGTCGAGAACTGG+AGG - chr7_1:18233168-18233187 None:intergenic 55.0%
TTCTCCCCAACCGAAATCGG+TGG - chr7_1:18233736-18233755 None:intergenic 55.0%
CGGTTCTCCCCAACCGAAAT+CGG - chr7_1:18233739-18233758 None:intergenic 55.0%
CGATTTCGGTTGGGGAGAAC+CGG + chr7_1:18233737-18233756 Msa1012800:CDS 55.0%
! AGAACCGGTTCTGTCTGGAC+CGG + chr7_1:18233752-18233771 Msa1012800:CDS 55.0%
GAAACCGGTCCAGACAGAAC+CGG - chr7_1:18233759-18233778 None:intergenic 55.0%
TCCTTCTCCGGCAAGGAAAC+CGG - chr7_1:18233774-18233793 None:intergenic 55.0%
CGGACACCGATACACCGACA+CGG + chr7_1:18232163-18232182 Msa1012800:intron 60.0%
AGAACTGGAGGGACGGAGAG+TGG - chr7_1:18233156-18233175 None:intergenic 60.0%
TCGGTCGAGAACTGGAGGGA+CGG - chr7_1:18233163-18233182 None:intergenic 60.0%
! TGGGGAGAACCGGTTCTGTC+TGG + chr7_1:18233747-18233766 Msa1012800:CDS 60.0%
! GTCTGGACCGGTTTCCTTGC+CGG + chr7_1:18233764-18233783 Msa1012800:CDS 60.0%
! ACCGGTTTCCTTGCCGGAGA+AGG + chr7_1:18233770-18233789 Msa1012800:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 18231400 18234029 18231400 ID=Msa1012800;Name=Msa1012800
chr7_1 mRNA 18231400 18234029 18231400 ID=Msa1012800-mRNA-1;Parent=Msa1012800;Name=Msa1012800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=86|1|1|1|0.5|0.33|3|130|437
chr7_1 exon 18231400 18231460 18231400 ID=Msa1012800-mRNA-1:exon:4555;Parent=Msa1012800-mRNA-1
chr7_1 exon 18231592 18232066 18231592 ID=Msa1012800-mRNA-1:exon:4556;Parent=Msa1012800-mRNA-1
chr7_1 exon 18233036 18234029 18233036 ID=Msa1012800-mRNA-1:exon:4557;Parent=Msa1012800-mRNA-1
chr7_1 five_prime_UTR 18231400 18231460 18231400 ID=Msa1012800-mRNA-1:five_prime_utr;Parent=Msa1012800-mRNA-1
chr7_1 five_prime_UTR 18231592 18231616 18231592 ID=Msa1012800-mRNA-1:five_prime_utr;Parent=Msa1012800-mRNA-1
chr7_1 CDS 18231617 18232066 18231617 ID=Msa1012800-mRNA-1:cds;Parent=Msa1012800-mRNA-1
chr7_1 CDS 18233036 18233899 18233036 ID=Msa1012800-mRNA-1:cds;Parent=Msa1012800-mRNA-1
chr7_1 three_prime_UTR 18233900 18234029 18233900 ID=Msa1012800-mRNA-1:three_prime_utr;Parent=Msa1012800-mRNA-1
Gene Sequence

>Msa1012800

ATGGAAAATTCTAATTATCAAAATGGCTTCAAACAAATTAATGTAAACCTAACAAGTGAACCAACACTTGTTCCACCATCTGAAGAAACAAAGAAAGGAATGTATTTCCTATCAAACCTTGATCAAAACATTGCTGTGATTGTAAGAACTGTTTATTGCTTCAAAAATGAAGAGAAGGGGAATGAGAATGCTTGTGAAGTGATTAAGGATGCATTGAAGAATGTTCTTGTTCATTATTACCCTCTTGCTGGTAGATTAAGTATAAGCTCAGAGGGTAAACTGATTGTGGATTGTACAGGAGAAGGTGCTCTTTTTGTTGAGGCTGAAGCTAATTGTTCAATGGAAGAAATTGGTGATATTACAAAACCTGATCCAAGGACTCTTGGTATGTTGGTTTATGATATTCCTGATGCTAAACATATTCTTCAGATGCCTCCTTTGGTTGCTCAGCTGACCAAGTTCAAATGTGGAGGTTTTTCTCTTGGACTATGCATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTGAACTCATGGGGGGAACTAGCAAGAGGTTTACCACTCTCCGTCCCTCCAGTTCTCGACCGAAGCATACTAAAGGTGCGCAATCCCCCGAAGATAGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAATCCAACACTAGTACCTTATATGAAGATGAAATGGTGTATCGATCATTCTGTTTTGATCCCGAGAAACTAAAAGAATTGAAGAAAAAAGCTTTAGAAGATGAAGGTGGTGTTCTTGAATCTTGCACAACATTTGAAGTGCTTTCAGCATTTGTTTGGATAGCTAGAACAAAAGCACTGAAAATGTTGCCAGAACAAGAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCTAAATTTGAACCAAAACTTCCAAAAGGGTATTTTGGGAATGGAATTATACTAACAAATGCTGTTTGTAAAGCAGGTGAAATTACGAACAAGCCCTTTTCGTATACGGTGAAGGTTATTCAAGATGCAATCAAGATGGTTACTGATAGTTACATGAGATCAGCTATCGATTATTTTGAGGTAACAAGAGCTAGGCCATCTTTGGCTTGTACACTTTTGATCACAACTTGGTCTAGGCTTCCCTTTCATACCACCGATTTCGGTTGGGGAGAACCGGTTCTGTCTGGACCGGTTTCCTTGCCGGAGAAGGAAGTGATTTTGTTCCTTTCACATGGTCAAGAGAGGAGAAGCATTAATGTGCTTCTAGGTTTACCTGCTCCTGTCATGAAGATCTTCCAAGATTTAATGCAGATATAG

Protein sequence

>Msa1012800

MENSNYQNGFKQINVNLTSEPTLVPPSEETKKGMYFLSNLDQNIAVIVRTVYCFKNEEKGNENACEVIKDALKNVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPRTLGMLVYDIPDAKHILQMPPLVAQLTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGELARGLPLSVPPVLDRSILKVRNPPKIEHLHQEFADIEDKSNTSTLYEDEMVYRSFCFDPEKLKELKKKALEDEGGVLESCTTFEVLSAFVWIARTKALKMLPEQETKLLFAVDGRAKFEPKLPKGYFGNGIILTNAVCKAGEITNKPFSYTVKVIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLPFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRSINVLLGLPAPVMKIFQDLMQI*