Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666660 | RXI03783.1 | 54.493 | 345 | 107 | 5 | 39 | 338 | 34 | 373 | 3.47e-124 | 371 |
| Msa0666660 | RXI03783.1 | 60.976 | 164 | 51 | 3 | 31 | 182 | 209 | 371 | 6.17e-57 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666660 | sp|Q9C523|DIR19_ARATH | 65.584 | 154 | 51 | 1 | 185 | 338 | 34 | 185 | 3.26e-71 | 222 |
| Msa0666660 | sp|Q9C523|DIR19_ARATH | 52.151 | 186 | 64 | 4 | 13 | 182 | 7 | 183 | 2.16e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666660 | A0A498KE92 | 54.493 | 345 | 107 | 5 | 39 | 338 | 34 | 373 | 1.66e-124 | 371 |
| Msa0666660 | A0A498KE92 | 60.976 | 164 | 51 | 3 | 31 | 182 | 209 | 371 | 2.95e-57 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0666660 | Msa1271290 | 0.806831 | 6.796960e-50 | -8.615850e-47 |
| Msa0666660 | Msa1438250 | 0.802833 | 4.651035e-49 | -8.615850e-47 |
| Msa0261340 | Msa0666660 | 0.801833 | 7.470466e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666660 | MtrunA17_Chr4g0005041 | 83.673 | 196 | 18 | 2 | 1 | 182 | 1 | 196 | 1.49e-103 | 302 |
| Msa0666660 | MtrunA17_Chr4g0005041 | 64.444 | 180 | 58 | 2 | 161 | 338 | 23 | 198 | 7.03e-79 | 239 |
| Msa0666660 | MtrunA17_Chr4g0005071 | 81.013 | 158 | 28 | 1 | 181 | 338 | 41 | 196 | 1.19e-92 | 274 |
| Msa0666660 | MtrunA17_Chr4g0005071 | 70.718 | 181 | 38 | 4 | 16 | 182 | 15 | 194 | 4.10e-83 | 250 |
| Msa0666660 | MtrunA17_Chr4g0005081 | 79.747 | 158 | 30 | 1 | 181 | 338 | 42 | 197 | 7.94e-92 | 272 |
| Msa0666660 | MtrunA17_Chr4g0005081 | 70.408 | 196 | 43 | 4 | 1 | 182 | 1 | 195 | 1.13e-87 | 261 |
| Msa0666660 | MtrunA17_Chr7g0259101 | 40.310 | 387 | 165 | 8 | 14 | 338 | 11 | 393 | 5.02e-90 | 275 |
| Msa0666660 | MtrunA17_Chr4g0005031 | 78.481 | 158 | 32 | 1 | 181 | 338 | 66 | 221 | 1.98e-87 | 262 |
| Msa0666660 | MtrunA17_Chr4g0005031 | 64.835 | 182 | 48 | 4 | 17 | 182 | 38 | 219 | 2.18e-76 | 234 |
| Msa0666660 | MtrunA17_Chr4g0005011 | 67.722 | 158 | 47 | 2 | 181 | 338 | 44 | 197 | 1.21e-72 | 223 |
| Msa0666660 | MtrunA17_Chr4g0005011 | 58.081 | 198 | 64 | 5 | 1 | 182 | 1 | 195 | 5.85e-68 | 211 |
| Msa0666660 | MtrunA17_Chr7g0243501 | 66.857 | 175 | 45 | 3 | 164 | 338 | 31 | 192 | 3.83e-71 | 219 |
| Msa0666660 | MtrunA17_Chr7g0243501 | 58.602 | 186 | 63 | 3 | 11 | 182 | 5 | 190 | 4.28e-63 | 199 |
| Msa0666660 | MtrunA17_Chr4g0005131 | 61.935 | 155 | 58 | 1 | 184 | 338 | 38 | 191 | 1.84e-63 | 199 |
| Msa0666660 | MtrunA17_Chr4g0005131 | 51.497 | 167 | 64 | 3 | 30 | 181 | 24 | 188 | 1.42e-47 | 159 |
| Msa0666660 | MtrunA17_Chr4g0005111 | 60.131 | 153 | 58 | 1 | 186 | 338 | 41 | 190 | 3.53e-63 | 199 |
| Msa0666660 | MtrunA17_Chr4g0005111 | 48.649 | 185 | 77 | 4 | 10 | 181 | 8 | 187 | 3.18e-52 | 171 |
| Msa0666660 | MtrunA17_Chr1g0175911 | 59.873 | 157 | 59 | 2 | 182 | 338 | 40 | 192 | 7.29e-61 | 193 |
| Msa0666660 | MtrunA17_Chr1g0175911 | 47.938 | 194 | 77 | 4 | 3 | 182 | 7 | 190 | 1.29e-52 | 172 |
| Msa0666660 | MtrunA17_Chr4g0037481 | 52.941 | 153 | 71 | 1 | 186 | 338 | 41 | 192 | 2.18e-53 | 174 |
| Msa0666660 | MtrunA17_Chr4g0037481 | 41.333 | 150 | 73 | 3 | 48 | 182 | 41 | 190 | 3.80e-34 | 124 |
| Msa0666660 | MtrunA17_Chr7g0259121 | 52.564 | 156 | 71 | 1 | 186 | 338 | 38 | 193 | 3.84e-53 | 174 |
| Msa0666660 | MtrunA17_Chr7g0259121 | 48.052 | 154 | 61 | 4 | 48 | 182 | 38 | 191 | 6.57e-41 | 142 |
| Msa0666660 | MtrunA17_Chr7g0259091 | 52.201 | 159 | 72 | 3 | 181 | 338 | 39 | 194 | 3.06e-51 | 168 |
| Msa0666660 | MtrunA17_Chr7g0259091 | 41.436 | 181 | 89 | 4 | 14 | 179 | 11 | 189 | 3.33e-38 | 134 |
| Msa0666660 | MtrunA17_Chr7g0259071 | 49.686 | 159 | 76 | 3 | 181 | 338 | 36 | 191 | 7.02e-50 | 165 |
| Msa0666660 | MtrunA17_Chr7g0259071 | 41.615 | 161 | 78 | 3 | 34 | 179 | 27 | 186 | 5.08e-39 | 137 |
| Msa0666660 | MtrunA17_Chr4g0005091 | 51.613 | 155 | 59 | 3 | 184 | 338 | 37 | 175 | 8.25e-46 | 154 |
| Msa0666660 | MtrunA17_Chr4g0005091 | 45.355 | 183 | 73 | 5 | 10 | 181 | 6 | 172 | 8.85e-43 | 146 |
| Msa0666660 | MtrunA17_Chr1g0177051 | 48.366 | 153 | 75 | 2 | 186 | 337 | 36 | 185 | 1.05e-45 | 154 |
| Msa0666660 | MtrunA17_Chr1g0177051 | 40.397 | 151 | 76 | 3 | 48 | 184 | 36 | 186 | 5.80e-28 | 107 |
| Msa0666660 | MtrunA17_Chr3g0136641 | 45.732 | 164 | 85 | 3 | 176 | 338 | 28 | 188 | 3.02e-43 | 147 |
| Msa0666660 | MtrunA17_Chr3g0136641 | 37.736 | 159 | 83 | 4 | 40 | 182 | 28 | 186 | 1.46e-26 | 103 |
| Msa0666660 | MtrunA17_Chr3g0136631 | 44.654 | 159 | 87 | 1 | 181 | 338 | 31 | 189 | 1.72e-42 | 145 |
| Msa0666660 | MtrunA17_Chr3g0136631 | 34.500 | 200 | 100 | 7 | 1 | 182 | 1 | 187 | 2.08e-26 | 103 |
| Msa0666660 | MtrunA17_Chr4g0040551 | 45.395 | 152 | 79 | 1 | 187 | 338 | 38 | 185 | 5.36e-42 | 144 |
| Msa0666660 | MtrunA17_Chr4g0040551 | 39.860 | 143 | 74 | 2 | 49 | 179 | 38 | 180 | 2.67e-29 | 111 |
| Msa0666660 | MtrunA17_Chr3g0090231 | 45.395 | 152 | 79 | 1 | 187 | 338 | 38 | 185 | 1.95e-41 | 143 |
| Msa0666660 | MtrunA17_Chr3g0090231 | 39.860 | 143 | 74 | 2 | 49 | 179 | 38 | 180 | 1.58e-28 | 109 |
| Msa0666660 | MtrunA17_Chr3g0085311 | 45.098 | 153 | 80 | 1 | 185 | 337 | 40 | 188 | 5.25e-40 | 139 |
| Msa0666660 | MtrunA17_Chr3g0085311 | 37.097 | 186 | 93 | 4 | 6 | 179 | 11 | 184 | 2.14e-28 | 108 |
| Msa0666660 | MtrunA17_Chr3g0085291 | 44.654 | 159 | 80 | 2 | 181 | 337 | 34 | 186 | 2.72e-39 | 137 |
| Msa0666660 | MtrunA17_Chr3g0085291 | 41.447 | 152 | 71 | 4 | 43 | 179 | 34 | 182 | 1.23e-26 | 104 |
| Msa0666660 | MtrunA17_Chr3g0085321 | 42.763 | 152 | 83 | 1 | 186 | 337 | 41 | 188 | 1.61e-37 | 132 |
| Msa0666660 | MtrunA17_Chr3g0085321 | 33.880 | 183 | 101 | 4 | 12 | 179 | 7 | 184 | 1.41e-28 | 109 |
| Msa0666660 | MtrunA17_Chr5g0446751 | 41.667 | 156 | 81 | 3 | 189 | 338 | 38 | 189 | 7.83e-37 | 131 |
| Msa0666660 | MtrunA17_Chr5g0446751 | 37.415 | 147 | 74 | 4 | 51 | 179 | 38 | 184 | 3.87e-23 | 94.7 |
| Msa0666660 | MtrunA17_Chr3g0085301 | 44.667 | 150 | 79 | 1 | 188 | 337 | 48 | 193 | 1.12e-35 | 128 |
| Msa0666660 | MtrunA17_Chr3g0085301 | 35.602 | 191 | 104 | 4 | 1 | 179 | 6 | 189 | 8.88e-29 | 110 |
| Msa0666660 | MtrunA17_Chr4g0068381 | 34.211 | 152 | 90 | 2 | 191 | 338 | 35 | 180 | 5.44e-22 | 91.7 |
| Msa0666660 | MtrunA17_Chr4g0068381 | 39.815 | 108 | 62 | 1 | 75 | 179 | 68 | 175 | 5.76e-18 | 80.5 |
| Msa0666660 | MtrunA17_Chr4g0068391 | 33.133 | 166 | 101 | 3 | 175 | 338 | 23 | 180 | 2.90e-21 | 89.7 |
| Msa0666660 | MtrunA17_Chr4g0068391 | 39.091 | 110 | 64 | 1 | 75 | 181 | 68 | 177 | 4.30e-18 | 80.9 |
| Msa0666660 | MtrunA17_Chr4g0024951 | 31.298 | 131 | 84 | 2 | 185 | 313 | 27 | 153 | 1.73e-15 | 73.6 |
| Msa0666660 | MtrunA17_Chr4g0024951 | 24.457 | 184 | 111 | 4 | 7 | 181 | 11 | 175 | 1.06e-11 | 62.8 |
| Msa0666660 | MtrunA17_Chr4g0024961 | 30.827 | 133 | 90 | 1 | 189 | 321 | 31 | 161 | 6.17e-14 | 69.3 |
| Msa0666660 | MtrunA17_Chr4g0024961 | 30.631 | 111 | 74 | 1 | 74 | 181 | 65 | 175 | 8.68e-13 | 65.9 |
| Msa0666660 | MtrunA17_Chr4g0005061 | 69.048 | 42 | 13 | 0 | 69 | 110 | 3 | 44 | 3.42e-13 | 68.2 |
| Msa0666660 | MtrunA17_Chr4g0005061 | 64.286 | 42 | 11 | 1 | 297 | 338 | 189 | 226 | 4.08e-12 | 65.1 |
| Msa0666660 | MtrunA17_Chr8g0387701 | 34.559 | 136 | 82 | 4 | 188 | 317 | 34 | 168 | 5.75e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666660 | AT1G58170.1 | 65.584 | 154 | 51 | 1 | 185 | 338 | 34 | 185 | 3.31e-72 | 222 |
| Msa0666660 | AT1G58170.1 | 52.151 | 186 | 64 | 4 | 13 | 182 | 7 | 183 | 2.20e-55 | 179 |
| Msa0666660 | AT1G55210.1 | 60.714 | 168 | 61 | 2 | 171 | 338 | 25 | 187 | 4.65e-68 | 211 |
| Msa0666660 | AT1G55210.1 | 51.630 | 184 | 76 | 3 | 10 | 182 | 4 | 185 | 1.01e-56 | 182 |
| Msa0666660 | AT1G55210.2 | 60.714 | 168 | 61 | 2 | 171 | 338 | 25 | 187 | 4.65e-68 | 211 |
| Msa0666660 | AT1G55210.2 | 51.630 | 184 | 76 | 3 | 10 | 182 | 4 | 185 | 1.01e-56 | 182 |
| Msa0666660 | AT5G49040.1 | 56.548 | 168 | 71 | 1 | 171 | 338 | 26 | 191 | 6.97e-62 | 196 |
| Msa0666660 | AT5G49040.1 | 50.515 | 194 | 76 | 4 | 3 | 182 | 2 | 189 | 6.56e-55 | 178 |
| Msa0666660 | AT3G13650.1 | 57.516 | 153 | 60 | 2 | 186 | 338 | 39 | 186 | 3.06e-57 | 184 |
| Msa0666660 | AT3G13650.1 | 48.168 | 191 | 80 | 5 | 3 | 182 | 2 | 184 | 7.01e-48 | 160 |
| Msa0666660 | AT3G13662.1 | 57.639 | 144 | 56 | 1 | 182 | 325 | 34 | 172 | 2.89e-51 | 168 |
| Msa0666660 | AT3G13662.1 | 52.055 | 146 | 57 | 3 | 37 | 170 | 27 | 171 | 3.65e-42 | 144 |
| Msa0666660 | AT1G65870.1 | 47.059 | 153 | 79 | 1 | 185 | 337 | 39 | 189 | 2.26e-48 | 161 |
| Msa0666660 | AT1G65870.1 | 44.966 | 149 | 68 | 2 | 47 | 181 | 39 | 187 | 6.54e-36 | 129 |
| Msa0666660 | AT5G49030.3 | 56.863 | 153 | 64 | 1 | 171 | 323 | 26 | 176 | 3.51e-48 | 174 |
| Msa0666660 | AT5G49030.3 | 50.820 | 183 | 70 | 4 | 3 | 171 | 2 | 178 | 1.49e-45 | 166 |
| Msa0666660 | AT3G13660.1 | 58.594 | 128 | 50 | 1 | 211 | 338 | 1 | 125 | 1.80e-46 | 154 |
| Msa0666660 | AT3G13660.1 | 59.483 | 116 | 44 | 1 | 70 | 182 | 8 | 123 | 3.22e-40 | 138 |
| Msa0666660 | AT2G21100.1 | 48.344 | 151 | 76 | 1 | 187 | 337 | 39 | 187 | 3.62e-46 | 155 |
| Msa0666660 | AT2G21100.1 | 41.216 | 148 | 73 | 3 | 49 | 182 | 39 | 186 | 4.20e-32 | 119 |
| Msa0666660 | AT2G21100.2 | 48.344 | 151 | 76 | 1 | 187 | 337 | 39 | 187 | 3.62e-46 | 155 |
| Msa0666660 | AT2G21100.2 | 41.216 | 148 | 73 | 3 | 49 | 182 | 39 | 186 | 4.20e-32 | 119 |
| Msa0666660 | AT1G22900.1 | 49.020 | 153 | 74 | 2 | 185 | 337 | 45 | 193 | 4.67e-45 | 152 |
| Msa0666660 | AT1G22900.1 | 42.953 | 149 | 69 | 3 | 47 | 181 | 45 | 191 | 7.52e-33 | 121 |
| Msa0666660 | AT5G42500.1 | 47.712 | 153 | 74 | 4 | 186 | 337 | 38 | 185 | 2.13e-44 | 150 |
| Msa0666660 | AT5G42500.1 | 41.216 | 148 | 71 | 4 | 48 | 181 | 38 | 183 | 2.98e-30 | 114 |
| Msa0666660 | AT5G42510.1 | 47.403 | 154 | 73 | 4 | 186 | 337 | 35 | 182 | 6.01e-43 | 147 |
| Msa0666660 | AT5G42510.1 | 41.892 | 148 | 70 | 4 | 48 | 181 | 35 | 180 | 2.69e-30 | 114 |
| Msa0666660 | AT4G38700.1 | 41.667 | 156 | 87 | 2 | 187 | 338 | 35 | 190 | 1.39e-36 | 130 |
| Msa0666660 | AT4G38700.1 | 36.667 | 150 | 75 | 4 | 49 | 178 | 35 | 184 | 1.06e-25 | 102 |
| Msa0666660 | AT2G21110.1 | 40.506 | 158 | 86 | 2 | 186 | 338 | 32 | 186 | 3.41e-35 | 127 |
| Msa0666660 | AT2G21110.1 | 35.329 | 167 | 84 | 3 | 33 | 181 | 23 | 183 | 8.35e-25 | 99.8 |
| Msa0666660 | AT3G58090.1 | 49.091 | 110 | 56 | 0 | 228 | 337 | 162 | 271 | 1.83e-33 | 125 |
| Msa0666660 | AT3G58090.1 | 46.729 | 107 | 54 | 1 | 78 | 181 | 163 | 269 | 5.33e-28 | 110 |
| Msa0666660 | AT4G23690.1 | 33.333 | 138 | 83 | 4 | 184 | 317 | 34 | 166 | 4.67e-14 | 70.1 |
| Msa0666660 | AT4G11210.1 | 31.111 | 135 | 88 | 3 | 187 | 321 | 37 | 166 | 2.09e-11 | 62.4 |
| Msa0666660 | AT4G11190.1 | 30.282 | 142 | 90 | 4 | 184 | 321 | 30 | 166 | 8.90e-11 | 60.8 |
Find 62 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGTACACTTACTATTT+TGG | 0.090168 | 4_4:+6801678 | Msa0666660:CDS |
| AACTGTGGTCCTAAAGTTAA+AGG | 0.173169 | 4_4:-6801547 | None:intergenic |
| CCGATAGACCGCAAGTTATT+AGG | 0.219308 | 4_4:+6803653 | Msa0666660:intron |
| CATTGGGTTGATCTCAAATA+TGG | 0.220837 | 4_4:+6804079 | Msa0666660:CDS |
| ATGGACAGTCCTTTGACTTT+AGG | 0.260301 | 4_4:+6803821 | Msa0666660:CDS |
| ATCAACAACCCTTTAACTTT+AGG | 0.295206 | 4_4:+6801538 | Msa0666660:CDS |
| TCAACCGGCCTTAATGCTTT+TGG | 0.320368 | 4_4:+6803785 | Msa0666660:CDS |
| TTTACTGAAGGAAAGTATAA+TGG | 0.333494 | 4_4:+6801658 | Msa0666660:CDS |
| CCTAACAACTTGCGATCTAT+TGG | 0.340385 | 4_4:-6801382 | None:intergenic |
| GGTAGTACTATTACTATCTT+GGG | 0.346488 | 4_4:+6803962 | Msa0666660:CDS |
| TTCATTGAAGGAAAGTATAA+TGG | 0.359474 | 4_4:+6803941 | Msa0666660:CDS |
| TGGTAGTACTATTACTATCT+TGG | 0.363892 | 4_4:+6803961 | Msa0666660:CDS |
| TCTGCATCACAGGAAGAAAT+AGG | 0.369275 | 4_4:+6803893 | Msa0666660:CDS |
| AGATGAAGTTGATTTGCTTA+TGG | 0.369472 | 4_4:+6801621 | Msa0666660:CDS |
| CAATTGAGTTCCAAACTTGT+TGG | 0.370040 | 4_4:+6803848 | Msa0666660:CDS |
| CAAAGTGATGAGGAAATGTT+TGG | 0.371335 | 4_4:-6801278 | None:intergenic |
| ATGCCTGTTGTTGGTGGTAG+TGG | 0.375988 | 4_4:+6804016 | Msa0666660:CDS |
| GGACTAAACCAAAAGCATTA+AGG | 0.382332 | 4_4:-6803793 | None:intergenic |
| CCAATAGATCGCAAGTTGTT+AGG | 0.388446 | 4_4:+6801382 | Msa0666660:CDS |
| TTAAACTCTACCACTGCCTT+TGG | 0.391230 | 4_4:+6801502 | Msa0666660:CDS |
| TGAACAATTGTAATTGTTGT+AGG | 0.399219 | 4_4:-6803743 | None:intergenic |
| ACTGTGGTCCTAAAGTTAAA+GGG | 0.432091 | 4_4:-6801546 | None:intergenic |
| ATGCTCAAGCTAGTACTCAT+TGG | 0.446414 | 4_4:+6804062 | Msa0666660:CDS |
| GTGGTAGAGTTTAATGATGA+TGG | 0.447071 | 4_4:-6801493 | None:intergenic |
| ATTGGGTTGATCTCAAATAT+GGG | 0.455169 | 4_4:+6804080 | Msa0666660:CDS |
| ATCATGCTCTTGATAAGGTT+AGG | 0.460618 | 4_4:+6803990 | Msa0666660:CDS |
| CAGTTGAATTCTAAGATTGT+TGG | 0.460772 | 4_4:+6801565 | Msa0666660:CDS |
| CCATTGAAACTACACTCAAC+CGG | 0.462163 | 4_4:+6803770 | Msa0666660:CDS |
| TGCTCAAGCTAGTACTCATT+GGG | 0.464742 | 4_4:+6804063 | Msa0666660:CDS |
| CCGGTTGAGTGTAGTTTCAA+TGG | 0.466931 | 4_4:-6803770 | None:intergenic |
| CGTACCAGTAGAATCTGAAA+TGG | 0.477796 | 4_4:-6803700 | None:intergenic |
| TTTCTATGCATCTGCATCAC+AGG | 0.485104 | 4_4:+6803883 | Msa0666660:CDS |
| AAGATTGTTGGAAAAGCTCA+AGG | 0.501113 | 4_4:+6801577 | Msa0666660:CDS |
| GAACAATTGTAATTGTTGTA+GGG | 0.501870 | 4_4:-6803742 | None:intergenic |
| GTTAGGGAGATGCCTGTTGT+TGG | 0.505285 | 4_4:+6804007 | Msa0666660:CDS |
| AGTCCACTACCACCAACAAC+AGG | 0.512977 | 4_4:-6804019 | None:intergenic |
| TCATGCTCTTGATAAGGTTA+GGG | 0.514769 | 4_4:+6803991 | Msa0666660:CDS |
| AAACTTGTTGGAAAAGCTCA+AGG | 0.519817 | 4_4:+6803860 | Msa0666660:CDS |
| AGGGAGATGCCTGTTGTTGG+TGG | 0.521357 | 4_4:+6804010 | Msa0666660:CDS |
| GAGGAATCATGCTCTTGATA+AGG | 0.521522 | 4_4:+6803985 | Msa0666660:CDS |
| TAAGCCATTTCAGATTCTAC+TGG | 0.530763 | 4_4:+6803696 | Msa0666660:CDS |
| AGAGTGTGTTGCAAGATATG+AGG | 0.539071 | 4_4:-6801312 | None:intergenic |
| GTTATTAGGCCTAAACAAGA+AGG | 0.549483 | 4_4:+6803667 | Msa0666660:intron |
| GGAAGAAGAACAAAGTGATG+AGG | 0.576295 | 4_4:-6801288 | None:intergenic |
| TACTGGTACGACATACTAAG+TGG | 0.577986 | 4_4:+6803713 | Msa0666660:CDS |
| TTCGATTGATCTCAAATCTG+AGG | 0.584967 | 4_4:+6801798 | Msa0666660:CDS |
| GTGTGTTGCAAGATATGAGG+AGG | 0.585643 | 4_4:-6801309 | None:intergenic |
| GTGATGAGGAAATGTTTGGA+AGG | 0.586936 | 4_4:-6801274 | None:intergenic |
| GTTGTTAGGCCTAAACAAGA+AGG | 0.591926 | 4_4:+6801396 | Msa0666660:CDS |
| GCGGACTGAACCAAAGGCAG+TGG | 0.603551 | 4_4:-6801512 | None:intergenic |
| AATTGCGGTCCTAAAGTCAA+AGG | 0.616773 | 4_4:-6803830 | None:intergenic |
| TAAACCAAAAGCATTAAGGC+CGG | 0.621311 | 4_4:-6803789 | None:intergenic |
| TTAAAGGGTTGTTGATCATG+CGG | 0.621737 | 4_4:-6801531 | None:intergenic |
| GATCATGCGGACTGAACCAA+AGG | 0.627284 | 4_4:-6801518 | None:intergenic |
| TTGGGTTGATCTCAAATATG+GGG | 0.641087 | 4_4:+6804081 | Msa0666660:CDS |
| ACAAGTTTGGAACTCAATTG+CGG | 0.641411 | 4_4:-6803845 | None:intergenic |
| AGATTGTTGGAAAAGCTCAA+GGG | 0.648311 | 4_4:+6801578 | Msa0666660:CDS |
| GTTGAGTGTAGTTTCAATGG+TGG | 0.649150 | 4_4:-6803767 | None:intergenic |
| TCAAAGGACTGTCCATCATG+CGG | 0.673611 | 4_4:-6803814 | None:intergenic |
| GTACTATTACTATCTTGGGG+AGG | 0.673978 | 4_4:+6803966 | Msa0666660:CDS |
| GTAGTACTATTACTATCTTG+GGG | 0.684734 | 4_4:+6803963 | Msa0666660:CDS |
| ACAATCTTAGAATTCAACTG+TGG | 0.718096 | 4_4:-6801562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCATTTCAAATTTTAT+TGG | + | chr4_4:6801425-6801444 | Msa0666660:CDS | 10.0% |
| !!! | GATGTAATTTATTAGTTTAA+TGG | + | chr4_4:6801997-6802016 | Msa0666660:intron | 15.0% |
| !! | AAAATGTATAAATGATATAC+CGG | + | chr4_4:6803188-6803207 | Msa0666660:intron | 15.0% |
| !!! | ACAACAACAAACTTATTTTT+TGG | - | chr4_4:6801889-6801908 | None:intergenic | 20.0% |
| !! | AAATTGTTTAGAAGGTAAAA+TGG | + | chr4_4:6802026-6802045 | Msa0666660:intron | 20.0% |
| !! | AATAGGAATAGTATATCATT+TGG | - | chr4_4:6803056-6803075 | None:intergenic | 20.0% |
| !!! | AGTTTTCTTAATCATAACAA+CGG | - | chr4_4:6803096-6803115 | None:intergenic | 20.0% |
| !! | ACAGAGAGAATATTTATTAT+TGG | - | chr4_4:6803124-6803143 | None:intergenic | 20.0% |
| !!! | TTTTTTTAATCTGTGTGAAA+TGG | - | chr4_4:6803170-6803189 | None:intergenic | 20.0% |
| !!! | TATATTTTTGATCCATAATC+TGG | + | chr4_4:6803277-6803296 | Msa0666660:intron | 20.0% |
| !! | ATATAATAAAACTATACTGC+CGG | - | chr4_4:6803315-6803334 | None:intergenic | 20.0% |
| !! | CATTTCAAATTTTATTGGCA+TGG | + | chr4_4:6801430-6801449 | Msa0666660:CDS | 25.0% |
| ! | GAATAACTATGATAGAAGTA+GGG | - | chr4_4:6801474-6801493 | None:intergenic | 25.0% |
| !!! | ATGAATTTTGCTTTTACTGA+AGG | + | chr4_4:6801646-6801665 | Msa0666660:CDS | 25.0% |
| !! | TTTACTGAAGGAAAGTATAA+TGG | + | chr4_4:6801658-6801677 | Msa0666660:CDS | 25.0% |
| !!! | CAACAAACTTATTTTTTGGA+CGG | - | chr4_4:6801885-6801904 | None:intergenic | 25.0% |
| ! | GGTGAAAAAAATTGTTTAGA+AGG | + | chr4_4:6802018-6802037 | Msa0666660:intron | 25.0% |
| !! | CAAATTAATTTGGTCTTCAA+CGG | - | chr4_4:6802347-6802366 | None:intergenic | 25.0% |
| !! | AAGACCAAATTAATTTGGTA+AGG | + | chr4_4:6802350-6802369 | Msa0666660:intron | 25.0% |
| !! | GTTTTCTTAATCATAACAAC+GGG | - | chr4_4:6803095-6803114 | None:intergenic | 25.0% |
| ! | AGTGAAAGAAAAAAGACAAA+TGG | - | chr4_4:6803430-6803449 | None:intergenic | 25.0% |
| ! | AATGTTTGGAAGACATAATT+TGG | - | chr4_4:6803532-6803551 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTCCTTCTTGTTT+AGG | - | chr4_4:6803679-6803698 | None:intergenic | 25.0% |
| ! | GAACAATTGTAATTGTTGTA+GGG | - | chr4_4:6803745-6803764 | None:intergenic | 25.0% |
| ! | TGAACAATTGTAATTGTTGT+AGG | - | chr4_4:6803746-6803765 | None:intergenic | 25.0% |
| !! | ATGAATTTTGCTTTCATTGA+AGG | + | chr4_4:6803929-6803948 | Msa0666660:CDS | 25.0% |
| !! | TTCATTGAAGGAAAGTATAA+TGG | + | chr4_4:6803941-6803960 | Msa0666660:CDS | 25.0% |
| !! | TTAGCTTTTCCTTCTTGTTT+AGG | - | chr4_4:6801408-6801427 | None:intergenic | 30.0% |
| GGAATAACTATGATAGAAGT+AGG | - | chr4_4:6801475-6801494 | None:intergenic | 30.0% | |
| ! | ATCAACAACCCTTTAACTTT+AGG | + | chr4_4:6801538-6801557 | Msa0666660:CDS | 30.0% |
| ACAATCTTAGAATTCAACTG+TGG | - | chr4_4:6801565-6801584 | None:intergenic | 30.0% | |
| !! | CAGTTGAATTCTAAGATTGT+TGG | + | chr4_4:6801565-6801584 | Msa0666660:CDS | 30.0% |
| !! | AGATGAAGTTGATTTGCTTA+TGG | + | chr4_4:6801621-6801640 | Msa0666660:CDS | 30.0% |
| !! | TGGAAGTACACTTACTATTT+TGG | + | chr4_4:6801678-6801697 | Msa0666660:CDS | 30.0% |
| !! | GGAAGTACACTTACTATTTT+GGG | + | chr4_4:6801679-6801698 | Msa0666660:CDS | 30.0% |
| CCATTTGCTTGACAAAATTA+AGG | - | chr4_4:6802263-6802282 | None:intergenic | 30.0% | |
| ! | CCTTAATTTTGTCAAGCAAA+TGG | + | chr4_4:6802260-6802279 | Msa0666660:intron | 30.0% |
| ! | TAATTTTGTCAAGCAAATGG+TGG | + | chr4_4:6802263-6802282 | Msa0666660:intron | 30.0% |
| CGTTGAAGACCAAATTAATT+TGG | + | chr4_4:6802345-6802364 | Msa0666660:intron | 30.0% | |
| AAGGCCTTACCAAATTAATT+TGG | - | chr4_4:6802357-6802376 | None:intergenic | 30.0% | |
| GACATCTCTAAATACAAACA+AGG | - | chr4_4:6802376-6802395 | None:intergenic | 30.0% | |
| ! | GAGTTAAGTGATCTGAAATA+TGG | + | chr4_4:6802407-6802426 | Msa0666660:intron | 30.0% |
| ! | AAGTGATCTGAAATATGGTA+AGG | + | chr4_4:6802412-6802431 | Msa0666660:intron | 30.0% |
| ! | TTTTCATCAAGTTTGGATTG+TGG | - | chr4_4:6802470-6802489 | None:intergenic | 30.0% |
| CTGACAATGTGTTTATAAGT+GGG | + | chr4_4:6802568-6802587 | Msa0666660:intron | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr4_4:6802569-6802588 | Msa0666660:intron | 30.0% | |
| TGATACCATCTTAAAAATCG+TGG | - | chr4_4:6802643-6802662 | None:intergenic | 30.0% | |
| CTGACAATGTGTTTATAAGT+GGG | + | chr4_4:6802568-6802587 | Msa0666660:intron | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr4_4:6802569-6802588 | Msa0666660:intron | 30.0% | |
| ! | GAAAAAGCATATAGAGGAAT+AGG | - | chr4_4:6803073-6803092 | None:intergenic | 30.0% |
| ! | TCAATTGACTCAGTTAAACT+GGG | - | chr4_4:6803147-6803166 | None:intergenic | 30.0% |
| TGTATAAATGATATACCGGA+TGG | + | chr4_4:6803192-6803211 | Msa0666660:intron | 30.0% | |
| ATTTACAATGGACCAGATTA+TGG | - | chr4_4:6803292-6803311 | None:intergenic | 30.0% | |
| AGAAAAAAGACAAATGGAGT+GGG | - | chr4_4:6803424-6803443 | None:intergenic | 30.0% | |
| AAGAAAAAAGACAAATGGAG+TGG | - | chr4_4:6803425-6803444 | None:intergenic | 30.0% | |
| AGTGAACGGAATATTAAAAG+AGG | - | chr4_4:6803455-6803474 | None:intergenic | 30.0% | |
| !! | TGATGATGAAGTTGATGTAA+GGG | - | chr4_4:6803594-6803613 | None:intergenic | 30.0% |
| !! | ATGATGATGAAGTTGATGTA+AGG | - | chr4_4:6803595-6803614 | None:intergenic | 30.0% |
| TGGTAGTACTATTACTATCT+TGG | + | chr4_4:6803961-6803980 | Msa0666660:CDS | 30.0% | |
| GGTAGTACTATTACTATCTT+GGG | + | chr4_4:6803962-6803981 | Msa0666660:CDS | 30.0% | |
| GTAGTACTATTACTATCTTG+GGG | + | chr4_4:6803963-6803982 | Msa0666660:CDS | 30.0% | |
| !! | ATTGGGTTGATCTCAAATAT+GGG | + | chr4_4:6804080-6804099 | Msa0666660:CDS | 30.0% |
| CAAAGTGATGAGGAAATGTT+TGG | - | chr4_4:6801281-6801300 | None:intergenic | 35.0% | |
| GTGGTAGAGTTTAATGATGA+TGG | - | chr4_4:6801496-6801515 | None:intergenic | 35.0% | |
| TTAAAGGGTTGTTGATCATG+CGG | - | chr4_4:6801534-6801553 | None:intergenic | 35.0% | |
| ACTGTGGTCCTAAAGTTAAA+GGG | - | chr4_4:6801549-6801568 | None:intergenic | 35.0% | |
| AACTGTGGTCCTAAAGTTAA+AGG | - | chr4_4:6801550-6801569 | None:intergenic | 35.0% | |
| AAGATTGTTGGAAAAGCTCA+AGG | + | chr4_4:6801577-6801596 | Msa0666660:CDS | 35.0% | |
| AGATTGTTGGAAAAGCTCAA+GGG | + | chr4_4:6801578-6801597 | Msa0666660:CDS | 35.0% | |
| !! | GTACACTTACTATTTTGGGA+AGG | + | chr4_4:6801683-6801702 | Msa0666660:CDS | 35.0% |
| ! | GACTTTTCAGATTTGCAAGA+GGG | + | chr4_4:6801755-6801774 | Msa0666660:CDS | 35.0% |
| TTCGATTGATCTCAAATCTG+AGG | + | chr4_4:6801798-6801817 | Msa0666660:CDS | 35.0% | |
| AACTTTACTTTCTCCGCATA+AGG | + | chr4_4:6802067-6802086 | Msa0666660:intron | 35.0% | |
| !!! | TTGTTTTTAACCACCACATG+TGG | - | chr4_4:6802201-6802220 | None:intergenic | 35.0% |
| TTAAGGTGCAATCCTATGAT+TGG | - | chr4_4:6802246-6802265 | None:intergenic | 35.0% | |
| !! | CTTCAACGGTTTGAGTTTTA+TGG | - | chr4_4:6802333-6802352 | None:intergenic | 35.0% |
| TCAGATCACTTAACTCAGTT+TGG | - | chr4_4:6802403-6802422 | None:intergenic | 35.0% | |
| ATTGTGGTTTCTTCTTAGCT+AGG | - | chr4_4:6802454-6802473 | None:intergenic | 35.0% | |
| ! | GCGACTATTTTCATCAAGTT+TGG | - | chr4_4:6802477-6802496 | None:intergenic | 35.0% |
| CACTATTAAGAATCCCACAT+CGG | + | chr4_4:6802533-6802552 | Msa0666660:intron | 35.0% | |
| CCACTTATAAACACATTGTC+AGG | - | chr4_4:6802570-6802589 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTATAAG+TGG | + | chr4_4:6802567-6802586 | Msa0666660:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr4_4:6802570-6802589 | Msa0666660:intron | 35.0% | |
| CCATCTTAAAAATCGTGGTT+GGG | - | chr4_4:6802638-6802657 | None:intergenic | 35.0% | |
| ACCATCTTAAAAATCGTGGT+TGG | - | chr4_4:6802639-6802658 | None:intergenic | 35.0% | |
| CCACTTATAAACACATTGTC+AGG | - | chr4_4:6802570-6802589 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTATAAG+TGG | + | chr4_4:6802567-6802586 | Msa0666660:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr4_4:6802570-6802589 | Msa0666660:intron | 35.0% | |
| ! | TATCATTTGGTTCCATTCCA+TGG | - | chr4_4:6803043-6803062 | None:intergenic | 35.0% |
| ! | GTCAATTGACTCAGTTAAAC+TGG | - | chr4_4:6803148-6803167 | None:intergenic | 35.0% |
| ATAAATGATATACCGGATGG+AGG | + | chr4_4:6803195-6803214 | Msa0666660:intron | 35.0% | |
| TAAATGATATACCGGATGGA+GGG | + | chr4_4:6803196-6803215 | Msa0666660:intron | 35.0% | |
| AATCTGGTCCATTGTAAATC+CGG | + | chr4_4:6803293-6803312 | Msa0666660:intron | 35.0% | |
| GTTTGGAAGACATAATTTGG+TGG | - | chr4_4:6803529-6803548 | None:intergenic | 35.0% | |
| GTAGAAGGAAGAAGAACAAA+GGG | - | chr4_4:6803559-6803578 | None:intergenic | 35.0% | |
| AGTAGAAGGAAGAAGAACAA+AGG | - | chr4_4:6803560-6803579 | None:intergenic | 35.0% | |
| TGTTTAGGCCTAATAACTTG+CGG | - | chr4_4:6803664-6803683 | None:intergenic | 35.0% | |
| GTTATTAGGCCTAAACAAGA+AGG | + | chr4_4:6803667-6803686 | Msa0666660:intron | 35.0% | |
| TAAGCCATTTCAGATTCTAC+TGG | + | chr4_4:6803696-6803715 | Msa0666660:CDS | 35.0% | |
| !! | TAAACCAAAAGCATTAAGGC+CGG | - | chr4_4:6803792-6803811 | None:intergenic | 35.0% |
| !! | GGACTAAACCAAAAGCATTA+AGG | - | chr4_4:6803796-6803815 | None:intergenic | 35.0% |
| ! | ACAAGTTTGGAACTCAATTG+CGG | - | chr4_4:6803848-6803867 | None:intergenic | 35.0% |
| CAATTGAGTTCCAAACTTGT+TGG | + | chr4_4:6803848-6803867 | Msa0666660:CDS | 35.0% | |
| ! | TTGAGCTTTTCCAACAAGTT+TGG | - | chr4_4:6803861-6803880 | None:intergenic | 35.0% |
| !! | AAACTTGTTGGAAAAGCTCA+AGG | + | chr4_4:6803860-6803879 | Msa0666660:CDS | 35.0% |
| ATCATGCTCTTGATAAGGTT+AGG | + | chr4_4:6803990-6804009 | Msa0666660:CDS | 35.0% | |
| TCATGCTCTTGATAAGGTTA+GGG | + | chr4_4:6803991-6804010 | Msa0666660:CDS | 35.0% | |
| !!! | GACTTTTCAGATTTGCTAGA+GGG | + | chr4_4:6804038-6804057 | Msa0666660:CDS | 35.0% |
| !! | CATTGGGTTGATCTCAAATA+TGG | + | chr4_4:6804079-6804098 | Msa0666660:CDS | 35.0% |
| !! | TTGGGTTGATCTCAAATATG+GGG | + | chr4_4:6804081-6804100 | Msa0666660:CDS | 35.0% |
| GTGATGAGGAAATGTTTGGA+AGG | - | chr4_4:6801277-6801296 | None:intergenic | 40.0% | |
| GGAAGAAGAACAAAGTGATG+AGG | - | chr4_4:6801291-6801310 | None:intergenic | 40.0% | |
| AGAGTGTGTTGCAAGATATG+AGG | - | chr4_4:6801315-6801334 | None:intergenic | 40.0% | |
| CCTAACAACTTGCGATCTAT+TGG | - | chr4_4:6801385-6801404 | None:intergenic | 40.0% | |
| CCAATAGATCGCAAGTTGTT+AGG | + | chr4_4:6801382-6801401 | Msa0666660:CDS | 40.0% | |
| GTTGTTAGGCCTAAACAAGA+AGG | + | chr4_4:6801396-6801415 | Msa0666660:CDS | 40.0% | |
| TTAAACTCTACCACTGCCTT+TGG | + | chr4_4:6801502-6801521 | Msa0666660:CDS | 40.0% | |
| ! | GTTAGAGAGATGCCTGTTTT+TGG | + | chr4_4:6801724-6801743 | Msa0666660:intron | 40.0% |
| ! | GGACTTTTCAGATTTGCAAG+AGG | + | chr4_4:6801754-6801773 | Msa0666660:CDS | 40.0% |
| GCGGAGAAAGTAAAGTTGTT+TGG | - | chr4_4:6802064-6802083 | None:intergenic | 40.0% | |
| TCTCTTAAGCACTCCTTATG+CGG | - | chr4_4:6802083-6802102 | None:intergenic | 40.0% | |
| ! | TTTTTAACCACCACATGTGG+TGG | - | chr4_4:6802198-6802217 | None:intergenic | 40.0% |
| CTTCGCTTTCAACCAATCAT+AGG | + | chr4_4:6802231-6802250 | Msa0666660:intron | 40.0% | |
| GATCACTTAACTCAGTTTGG+CGG | - | chr4_4:6802400-6802419 | None:intergenic | 40.0% | |
| CGATGTGGGATTCTTAATAG+TGG | - | chr4_4:6802535-6802554 | None:intergenic | 40.0% | |
| TTAAGAATCCCACATCGGAT+AGG | + | chr4_4:6802538-6802557 | Msa0666660:intron | 40.0% | |
| !! | CCCAACCACGATTTTTAAGA+TGG | + | chr4_4:6802635-6802654 | Msa0666660:intron | 40.0% |
| ! | AGAGCATCTTCAAGATCCAT+TGG | + | chr4_4:6802662-6802681 | Msa0666660:intron | 40.0% |
| GAGCATCTTCAAGATCCATT+GGG | + | chr4_4:6802663-6802682 | Msa0666660:intron | 40.0% | |
| !! | GATAGCGGAAACCTTATAAC+AGG | - | chr4_4:6802692-6802711 | None:intergenic | 40.0% |
| CTTAGGTTCGTGGACATAAA+TGG | - | chr4_4:6802725-6802744 | None:intergenic | 40.0% | |
| CATTTATGTCCACGAACCTA+AGG | + | chr4_4:6802723-6802742 | Msa0666660:intron | 40.0% | |
| GAACCTAAGGTTTCCACTAT+CGG | + | chr4_4:6802736-6802755 | Msa0666660:intron | 40.0% | |
| AACCTAAGGTTTCCACTATC+GGG | + | chr4_4:6802737-6802756 | Msa0666660:intron | 40.0% | |
| ! | GTTTGGTTCGTGGACATAAA+TGG | - | chr4_4:6802770-6802789 | None:intergenic | 40.0% |
| TTGTGTTAAGAGTCCCACAT+CGG | + | chr4_4:6802813-6802832 | Msa0666660:intron | 40.0% | |
| ! | GACTCACATGCATCATTTTG+TGG | - | chr4_4:6802964-6802983 | None:intergenic | 40.0% |
| TCACTAAAATGACGCAACCA+TGG | + | chr4_4:6802982-6803001 | Msa0666660:intron | 40.0% | |
| ! | CAACGGGAAAAAGCATATAG+AGG | - | chr4_4:6803079-6803098 | None:intergenic | 40.0% |
| ! | ATTTTTGTACTCCCTCCATC+CGG | - | chr4_4:6803210-6803229 | None:intergenic | 40.0% |
| CTATACTGCCGGATTTACAA+TGG | - | chr4_4:6803304-6803323 | None:intergenic | 40.0% | |
| TAGTGAAGTGACGAAGTGAA+CGG | - | chr4_4:6803469-6803488 | None:intergenic | 40.0% | |
| GAACAAAGGGAGGAAATGTT+TGG | - | chr4_4:6803546-6803565 | None:intergenic | 40.0% | |
| ! | CCTAATAACTTGCGGTCTAT+CGG | - | chr4_4:6803656-6803675 | None:intergenic | 40.0% |
| CGTACCAGTAGAATCTGAAA+TGG | - | chr4_4:6803703-6803722 | None:intergenic | 40.0% | |
| TACTGGTACGACATACTAAG+TGG | + | chr4_4:6803713-6803732 | Msa0666660:CDS | 40.0% | |
| GTTGAGTGTAGTTTCAATGG+TGG | - | chr4_4:6803770-6803789 | None:intergenic | 40.0% | |
| CCATTGAAACTACACTCAAC+CGG | + | chr4_4:6803770-6803789 | Msa0666660:CDS | 40.0% | |
| !!! | TTTTGGTTTAGTCCGCATGA+TGG | + | chr4_4:6803802-6803821 | Msa0666660:CDS | 40.0% |
| ! | ATGGACAGTCCTTTGACTTT+AGG | + | chr4_4:6803821-6803840 | Msa0666660:CDS | 40.0% |
| AATTGCGGTCCTAAAGTCAA+AGG | - | chr4_4:6803833-6803852 | None:intergenic | 40.0% | |
| TTTCTATGCATCTGCATCAC+AGG | + | chr4_4:6803883-6803902 | Msa0666660:CDS | 40.0% | |
| TCTGCATCACAGGAAGAAAT+AGG | + | chr4_4:6803893-6803912 | Msa0666660:CDS | 40.0% | |
| GTACTATTACTATCTTGGGG+AGG | + | chr4_4:6803966-6803985 | Msa0666660:CDS | 40.0% | |
| GAGGAATCATGCTCTTGATA+AGG | + | chr4_4:6803985-6804004 | Msa0666660:CDS | 40.0% | |
| !!! | GGACTTTTCAGATTTGCTAG+AGG | + | chr4_4:6804037-6804056 | Msa0666660:CDS | 40.0% |
| ATGCTCAAGCTAGTACTCAT+TGG | + | chr4_4:6804062-6804081 | Msa0666660:CDS | 40.0% | |
| TGCTCAAGCTAGTACTCATT+GGG | + | chr4_4:6804063-6804082 | Msa0666660:CDS | 40.0% | |
| GTGTGTTGCAAGATATGAGG+AGG | - | chr4_4:6801312-6801331 | None:intergenic | 45.0% | |
| TATTGGCATGGCATAGTGAG+TGG | + | chr4_4:6801442-6801461 | Msa0666660:intron | 45.0% | |
| !!! | AGAGAGATGCCTGTTTTTGG+TGG | + | chr4_4:6801727-6801746 | Msa0666660:intron | 45.0% |
| !!! | ATGCCTGTTTTTGGTGGTAG+TGG | + | chr4_4:6801733-6801752 | Msa0666660:CDS | 45.0% |
| AGTCCACTACCACCAAAAAC+AGG | - | chr4_4:6801739-6801758 | None:intergenic | 45.0% | |
| GAAGATTTAGCCACCACATG+TGG | + | chr4_4:6802185-6802204 | Msa0666660:intron | 45.0% | |
| TTCTTAGCTAGGCTTCGTCA+TGG | - | chr4_4:6802443-6802462 | None:intergenic | 45.0% | |
| !! | ACTTCACAAGGCGGTTTTGT+GGG | + | chr4_4:6802601-6802620 | Msa0666660:intron | 45.0% |
| AGCGGAAACCTTATAACAGG+TGG | - | chr4_4:6802689-6802708 | None:intergenic | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr4_4:6802721-6802740 | None:intergenic | 45.0% | |
| AGGTTCGTGGACATAAATGG+TGG | - | chr4_4:6802722-6802741 | None:intergenic | 45.0% | |
| TAGTGGAAACCTTAGGTTCG+TGG | - | chr4_4:6802735-6802754 | None:intergenic | 45.0% | |
| TCGTGGACATAAATGGTGAG+TGG | - | chr4_4:6802763-6802782 | None:intergenic | 45.0% | |
| ! | ACACTATTGGGTTTGGTTCG+TGG | - | chr4_4:6802780-6802799 | None:intergenic | 45.0% |
| CGAACCAAACCCAATAGTGT+TGG | + | chr4_4:6802780-6802799 | Msa0666660:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr4_4:6802818-6802837 | Msa0666660:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4_4:6802614-6802633 | None:intergenic | 45.0% | |
| CGAAATCGGAAATCGTGGTT+GGG | - | chr4_4:6802913-6802932 | None:intergenic | 45.0% | |
| GTTCCATTCCATGGCTGAAT+GGG | - | chr4_4:6803034-6803053 | None:intergenic | 45.0% | |
| GACAAATGGAGTGGGATGTA+GGG | - | chr4_4:6803416-6803435 | None:intergenic | 45.0% | |
| AGACAAATGGAGTGGGATGT+AGG | - | chr4_4:6803417-6803436 | None:intergenic | 45.0% | |
| GAAGGAAGAAGAACAAAGGG+AGG | - | chr4_4:6803556-6803575 | None:intergenic | 45.0% | |
| CCGATAGACCGCAAGTTATT+AGG | + | chr4_4:6803653-6803672 | Msa0666660:intron | 45.0% | |
| CCGGTTGAGTGTAGTTTCAA+TGG | - | chr4_4:6803773-6803792 | None:intergenic | 45.0% | |
| ! | TCAACCGGCCTTAATGCTTT+TGG | + | chr4_4:6803785-6803804 | Msa0666660:CDS | 45.0% |
| TCAAAGGACTGTCCATCATG+CGG | - | chr4_4:6803817-6803836 | None:intergenic | 45.0% | |
| !!! | TAATATTTAAATATTTTGTT+TGG | + | chr4_4:6803335-6803354 | Msa0666660:intron | 5.0% |
| ! | GATCATGCGGACTGAACCAA+AGG | - | chr4_4:6801521-6801540 | None:intergenic | 50.0% |
| GATTTAGCCACCACATGTGG+TGG | + | chr4_4:6802188-6802207 | Msa0666660:intron | 50.0% | |
| ATCCCACATCGGATAGGAGA+TGG | + | chr4_4:6802544-6802563 | Msa0666660:intron | 50.0% | |
| GCAATCCTCACTTCACAAGG+CGG | + | chr4_4:6802592-6802611 | Msa0666660:intron | 50.0% | |
| CAAAACCGCCTTGTGAAGTG+AGG | - | chr4_4:6802600-6802619 | None:intergenic | 50.0% | |
| ! | CACTTCACAAGGCGGTTTTG+TGG | + | chr4_4:6802600-6802619 | Msa0666660:intron | 50.0% |
| !! | CTTCACAAGGCGGTTTTGTG+GGG | + | chr4_4:6802602-6802621 | Msa0666660:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr4_4:6802612-6802631 | Msa0666660:intron | 50.0% |
| CCTTATAACAGGTGGCCCAA+TGG | - | chr4_4:6802681-6802700 | None:intergenic | 50.0% | |
| CCATTGGGCCACCTGTTATA+AGG | + | chr4_4:6802678-6802697 | Msa0666660:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr4_4:6802718-6802737 | None:intergenic | 50.0% |
| GCGACCAACACTATTGGGTT+TGG | - | chr4_4:6802787-6802806 | None:intergenic | 50.0% | |
| !! | ATCCTCACAAGCCGGTTTTG+TGG | + | chr4_4:6802875-6802894 | Msa0666660:intron | 50.0% |
| !! | TCCTCACAAGCCGGTTTTGT+GGG | + | chr4_4:6802876-6802895 | Msa0666660:intron | 50.0% |
| GCGAAATCGGAAATCGTGGT+TGG | - | chr4_4:6802914-6802933 | None:intergenic | 50.0% | |
| CTGCTCAATCTTGTGTGGGA+GGG | - | chr4_4:6802938-6802957 | None:intergenic | 50.0% | |
| TCTGCTCAATCTTGTGTGGG+AGG | - | chr4_4:6802939-6802958 | None:intergenic | 50.0% | |
| GCGTCTGCTCAATCTTGTGT+GGG | - | chr4_4:6802942-6802961 | None:intergenic | 50.0% | |
| !! | TGGTTGTTGGCTCATGACCA+TGG | - | chr4_4:6803002-6803021 | None:intergenic | 50.0% |
| ACACCCATTCAGCCATGGAA+TGG | + | chr4_4:6803028-6803047 | Msa0666660:intron | 50.0% | |
| GGTTCCATTCCATGGCTGAA+TGG | - | chr4_4:6803035-6803054 | None:intergenic | 50.0% | |
| ! | GGGTGTTGCAAGAGAGTAGA+AGG | - | chr4_4:6803574-6803593 | None:intergenic | 50.0% |
| GTTAGGGAGATGCCTGTTGT+TGG | + | chr4_4:6804007-6804026 | Msa0666660:CDS | 50.0% | |
| !! | ATGCCTGTTGTTGGTGGTAG+TGG | + | chr4_4:6804016-6804035 | Msa0666660:CDS | 50.0% |
| AGTCCACTACCACCAACAAC+AGG | - | chr4_4:6804022-6804041 | None:intergenic | 50.0% | |
| GGCCATCTCCTATCCGATGT+GGG | - | chr4_4:6802549-6802568 | None:intergenic | 55.0% | |
| AGGCCATCTCCTATCCGATG+TGG | - | chr4_4:6802550-6802569 | None:intergenic | 55.0% | |
| GGGGCAATCCTCACTTCACA+AGG | + | chr4_4:6802589-6802608 | Msa0666660:intron | 55.0% | |
| !! | AATGGTGGGTGGCTCGATAG+CGG | - | chr4_4:6802707-6802726 | None:intergenic | 55.0% |
| !! | GGCCCGATAGTGGAAACCTT+AGG | - | chr4_4:6802742-6802761 | None:intergenic | 55.0% |
| AATGGTGAGTGGCCCGATAG+TGG | - | chr4_4:6802752-6802771 | None:intergenic | 55.0% | |
| !! | ACCCAATAGTGTTGGTCGCG+AGG | + | chr4_4:6802788-6802807 | Msa0666660:intron | 55.0% |
| CCCTCGCGACCAACACTATT+GGG | - | chr4_4:6802792-6802811 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGTTGGTCGCGA+GGG | + | chr4_4:6802789-6802808 | Msa0666660:intron | 55.0% |
| !! | CCAATAGTGTTGGTCGCGAG+GGG | + | chr4_4:6802790-6802809 | Msa0666660:intron | 55.0% |
| GTCCCACATCGGATAGGAGA+TGG | + | chr4_4:6802824-6802843 | Msa0666660:intron | 55.0% | |
| GGCCATCTCCTATCCGATGT+GGG | - | chr4_4:6802549-6802568 | None:intergenic | 55.0% | |
| AGGCCATCTCCTATCCGATG+TGG | - | chr4_4:6802550-6802569 | None:intergenic | 55.0% | |
| TGGGGGAAATCCTCACAAGC+CGG | + | chr4_4:6802867-6802886 | Msa0666660:intron | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr4_4:6802877-6802896 | Msa0666660:intron | 55.0% |
| GGGTGCGAAATCGGAAATCG+TGG | - | chr4_4:6802918-6802937 | None:intergenic | 55.0% | |
| ! | TGTGTGGGAGGGTGCGAAAT+CGG | - | chr4_4:6802927-6802946 | None:intergenic | 55.0% |
| GGCGTCTGCTCAATCTTGTG+TGG | - | chr4_4:6802943-6802962 | None:intergenic | 55.0% | |
| TCCATGGCTGAATGGGTGTG+TGG | - | chr4_4:6803027-6803046 | None:intergenic | 55.0% | |
| AGGGAGATGCCTGTTGTTGG+TGG | + | chr4_4:6804010-6804029 | Msa0666660:CDS | 55.0% | |
| ! | GCGGACTGAACCAAAGGCAG+TGG | - | chr4_4:6801515-6801534 | None:intergenic | 60.0% |
| CCCCTCGCGACCAACACTAT+TGG | - | chr4_4:6802793-6802812 | None:intergenic | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr4_4:6802880-6802899 | None:intergenic | 60.0% |
| TGGGTGTGTGGCGTGGTTGT+TGG | - | chr4_4:6803015-6803034 | None:intergenic | 60.0% | |
| GCCACACACCCATTCAGCCA+TGG | + | chr4_4:6803023-6803042 | Msa0666660:intron | 60.0% | |
| GGCTGAATGGGTGTGTGGCG+TGG | - | chr4_4:6803022-6803041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 6801271 | 6804144 | 6801271 | ID=Msa0666660;Name=Msa0666660 |
| chr4_4 | mRNA | 6801271 | 6804144 | 6801271 | ID=Msa0666660-mRNA-1;Parent=Msa0666660;Name=Msa0666660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|4|0|338 |
| chr4_4 | exon | 6801271 | 6801460 | 6801271 | ID=Msa0666660-mRNA-1:exon:2236;Parent=Msa0666660-mRNA-1 |
| chr4_4 | exon | 6801488 | 6801723 | 6801488 | ID=Msa0666660-mRNA-1:exon:2237;Parent=Msa0666660-mRNA-1 |
| chr4_4 | exon | 6801733 | 6801846 | 6801733 | ID=Msa0666660-mRNA-1:exon:2238;Parent=Msa0666660-mRNA-1 |
| chr4_4 | exon | 6803668 | 6804144 | 6803668 | ID=Msa0666660-mRNA-1:exon:2239;Parent=Msa0666660-mRNA-1 |
| chr4_4 | CDS | 6801271 | 6801460 | 6801271 | ID=Msa0666660-mRNA-1:cds;Parent=Msa0666660-mRNA-1 |
| chr4_4 | CDS | 6801488 | 6801723 | 6801488 | ID=Msa0666660-mRNA-1:cds;Parent=Msa0666660-mRNA-1 |
| chr4_4 | CDS | 6801733 | 6801846 | 6801733 | ID=Msa0666660-mRNA-1:cds;Parent=Msa0666660-mRNA-1 |
| chr4_4 | CDS | 6803668 | 6804144 | 6803668 | ID=Msa0666660-mRNA-1:cds;Parent=Msa0666660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
