AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261340 MtrunA17_Chr2g0323361 96.689 302 10 0 1 302 1 302 0.0 607
Msa0261340 MtrunA17_Chr2g0280941 40.942 276 139 7 1 272 1 256 3.87e-64 202
Msa0261340 MtrunA17_Chr5g0412471 32.714 269 167 7 28 290 69 329 8.68e-36 131
Msa0261340 MtrunA17_Chr5g0414271 32.937 252 155 4 6 248 27 273 2.59e-31 119
Msa0261340 MtrunA17_Chr4g0041721 32.377 244 147 7 36 270 77 311 7.19e-31 118
Msa0261340 MtrunA17_Chr3g0133211 31.835 267 163 6 28 283 74 332 1.46e-30 118
Msa0261340 MtrunA17_Chr8g0364521 33.182 220 138 3 32 247 75 289 2.40e-29 114
Msa0261340 MtrunA17_Chr5g0427191 28.475 295 194 6 19 301 56 345 1.48e-28 112
Msa0261340 MtrunA17_Chr4g0053381 29.555 247 158 6 64 301 97 336 2.31e-27 109
Msa0261340 MtrunA17_Chr5g0401271 31.959 194 124 3 59 251 113 299 4.42e-25 103
Msa0261340 MtrunA17_Chr8g0367661 26.299 308 191 7 19 300 62 359 1.87e-24 101
Msa0261340 MtrunA17_Chr3g0134261 31.140 228 138 8 26 244 62 279 6.00e-23 97.1
Msa0261340 MtrunA17_Chr1g0208231 28.094 299 186 9 19 301 74 359 1.79e-21 93.6
Msa0261340 MtrunA17_Chr3g0134781 32.161 199 124 5 69 261 87 280 7.90e-18 82.4
Msa0261340 MtrunA17_Chr4g0054011 27.273 253 170 6 2 251 30 271 8.80e-18 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261340 AT4G03270.1 45.079 315 140 10 1 301 1 296 9.71e-77 236
Msa0261340 AT4G03270.2 44.762 315 140 11 1 301 1 295 1.75e-74 231
Msa0261340 AT1G70210.1 33.761 234 134 5 28 250 59 282 9.31e-37 134
Msa0261340 AT5G65420.4 39.378 193 106 6 28 214 54 241 2.09e-34 126
Msa0261340 AT5G65420.1 39.378 193 106 6 28 214 54 241 2.76e-34 127
Msa0261340 AT2G22490.1 32.130 277 159 8 21 280 67 331 1.43e-33 126
Msa0261340 AT5G65420.3 37.624 202 107 6 28 214 54 251 2.75e-33 124
Msa0261340 AT2G22490.2 32.014 278 159 9 21 280 67 332 7.60e-32 122
Msa0261340 AT5G10440.1 34.783 207 123 5 15 215 33 233 1.01e-29 114
Msa0261340 AT5G65420.2 38.372 172 95 6 28 193 54 220 7.31e-28 108
Msa0261340 AT5G10440.2 37.662 154 85 4 15 163 33 180 5.50e-25 100
Msa0261340 AT4G34160.1 28.141 199 138 2 64 261 102 296 5.13e-22 95.1
Msa0261340 AT3G50070.1 27.184 206 144 3 64 268 101 301 8.01e-22 94.4
Msa0261340 AT5G67260.1 28.431 204 139 3 64 264 111 310 9.71e-22 94.4
Msa0261340 AT5G67260.2 28.431 204 139 3 64 264 111 310 2.20e-21 93.6
Msa0261340 AT4G37630.2 32.571 175 102 6 38 204 59 225 5.55e-16 76.6
Msa0261340 AT4G37630.3 29.688 192 112 7 28 204 44 227 1.73e-15 75.1
Msa0261340 AT4G37630.1 32.203 177 102 7 38 204 59 227 4.29e-15 75.1

Find 70 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTAGCTATCAACTATT+TGG 0.164680 2_2:-59654900 Msa0261340:CDS
ATATGTATATCTAATCATTT+TGG 0.219595 2_2:-59652815 Msa0261340:three_prime_UTR
GCTTGATGAAATAACATTAA+AGG 0.226179 2_2:-59654295 Msa0261340:CDS
TTGTTCTGTCTCTTAGCTTA+TGG 0.267188 2_2:-59652924 Msa0261340:three_prime_UTR
CTTTCAATATCCATGCTTCT+TGG 0.273803 2_2:-59654038 Msa0261340:CDS
ATAACAACATTTAATCATTC+TGG 0.294548 2_2:-59653266 Msa0261340:three_prime_UTR
AAGTAAGGAATGAAAGAAAA+AGG 0.298648 2_2:+59654333 None:intergenic
AAGATGATAAGCATTGTTAT+AGG 0.308241 2_2:+59655409 None:intergenic
TTTAATGTGCATTCAAGTTC+AGG 0.315528 2_2:-59653440 Msa0261340:CDS
CCTCGCTAACCAAGGAATAT+TGG 0.325308 2_2:-59654870 Msa0261340:intron
TTTATTTACATATGAACAAT+TGG 0.357614 2_2:+59654006 None:intergenic
AGAATGGAAGCACTTGTCTT+AGG 0.365894 2_2:-59654387 Msa0261340:CDS
GTACTCTGCTACTGATGTTC+AGG 0.368096 2_2:-59654571 Msa0261340:intron
ATTATATTGAAGTCACAAAA+AGG 0.370173 2_2:-59654249 Msa0261340:intron
AGGAACATGGAAGAAAATAT+TGG 0.380385 2_2:-59653048 Msa0261340:three_prime_UTR
AGTAATTTAGTGGAGGGATA+TGG 0.382669 2_2:+59655249 None:intergenic
CATCAAACTCATTTGATTTG+AGG 0.384576 2_2:+59655219 None:intergenic
CACAAATGGATCAAAATTGC+AGG 0.385190 2_2:+59654925 None:intergenic
CTTACTTCACAAATTTGTTT+AGG 0.391668 2_2:-59654317 Msa0261340:CDS
AGATGATAAGCATTGTTATA+GGG 0.399065 2_2:+59655410 None:intergenic
CAGCATTAATCATTCTTGTA+TGG 0.411119 2_2:+59653242 None:intergenic
TTTCAATATCCATGCTTCTT+GGG 0.414331 2_2:-59654037 Msa0261340:CDS
CTAAACAAATTTGTGAAGTA+AGG 0.421385 2_2:+59654318 None:intergenic
AGTTTGTTTGCCCATGGCTT+TGG 0.421863 2_2:+59654642 None:intergenic
AAAGAGGAGTGATAAAGAAA+AGG 0.429027 2_2:+59655438 None:intergenic
CAAATGAATAATAGTATAGT+AGG 0.442546 2_2:-59652901 Msa0261340:three_prime_UTR
ATTACTGCAGGAAAGTGTTA+TGG 0.446640 2_2:-59653513 Msa0261340:intron
TATTAGGCTCTTATGAATCA+TGG 0.448343 2_2:-59654447 Msa0261340:intron
GATGAGGCAGCAACTATAGA+TGG 0.457339 2_2:+59654091 None:intergenic
GAATCAGATGAAAGCTATGT+AGG 0.472044 2_2:+59655489 None:intergenic
GATCCAAATAGTTGATAGCT+AGG 0.479845 2_2:+59654897 None:intergenic
AAACATCTTCACAAGTAGTA+AGG 0.481341 2_2:+59655297 None:intergenic
GCAAGTAGTTTGTTTGCCCA+TGG 0.487774 2_2:+59654636 None:intergenic
TAAATCTGCTGATTGTGAAA+AGG 0.489717 2_2:-59653068 Msa0261340:three_prime_UTR
AAGAGAAGCATTTCAAAAGA+AGG 0.492011 2_2:-59653328 Msa0261340:CDS
GATACAAGATATAGCTAAAG+AGG 0.498666 2_2:-59653477 Msa0261340:CDS
CAAGAAGCATGGATATTGAA+AGG 0.504707 2_2:+59654039 None:intergenic
TTTCATCTCTTTGATCTCAC+AGG 0.506071 2_2:-59655180 Msa0261340:intron
TAATAGTATAGTAGGAGTGA+AGG 0.507559 2_2:-59652893 Msa0261340:three_prime_UTR
AATCAGATGAAAGCTATGTA+GGG 0.509072 2_2:+59655490 None:intergenic
TTTGAAAGTAATTTAGTGGA+GGG 0.521266 2_2:+59655243 None:intergenic
ATGAGCAACATTGGTTCCGT+TGG 0.521294 2_2:+59653364 None:intergenic
AAGAAGCATGGATATTGAAA+GGG 0.521809 2_2:+59654040 None:intergenic
ATAGCTAGGAAAGTCACAAA+TGG 0.523610 2_2:+59654911 None:intergenic
CATAGTAGTATGAGCAACAT+TGG 0.534202 2_2:+59653355 None:intergenic
GATATTATTCCCAAGAAGCA+TGG 0.534390 2_2:+59654028 None:intergenic
CTTCACAAGTAGTAAGGTCA+TGG 0.537643 2_2:+59655303 None:intergenic
TTGTTATAGGGAGAGAAAAG+AGG 0.545239 2_2:+59655422 None:intergenic
TTGTATTGTCTGATTTGTAG+TGG 0.545844 2_2:-59652951 Msa0261340:three_prime_UTR
TGAAGCATAGAGAAGGGATG+AGG 0.552728 2_2:+59654075 None:intergenic
TCCATGGATGTGTGAATATG+TGG 0.564180 2_2:+59655356 None:intergenic
CTTATGAATCATGGTGATGG+TGG 0.566485 2_2:-59654438 Msa0261340:CDS
CCAATATTCCTTGGTTAGCG+AGG 0.574453 2_2:+59654870 None:intergenic
TGTAACAGCAACCAAAGCCA+TGG 0.575586 2_2:-59654653 Msa0261340:intron
TTGTCTTAGGAGCACTACAT+TGG 0.578863 2_2:-59654374 Msa0261340:CDS
TCCACATATTCACACATCCA+TGG 0.579979 2_2:-59655357 Msa0261340:exon
ACTCATGTGAAGCATAGAGA+AGG 0.592114 2_2:+59654068 None:intergenic
ACTTGAATGCACATTAAACA+TGG 0.595158 2_2:+59653445 None:intergenic
ATAATAGGAAGAGATAGTGA+TGG 0.609927 2_2:-59653176 Msa0261340:three_prime_UTR
GATCGCTTCCTCGCTAACCA+AGG 0.614318 2_2:-59654878 Msa0261340:CDS
CTCATGTGAAGCATAGAGAA+GGG 0.619559 2_2:+59654069 None:intergenic
GGTCATGGAAATATTCAAGA+GGG 0.626065 2_2:+59655318 None:intergenic
GCTGATTGTGAAAAGGAACA+TGG 0.627395 2_2:-59653061 Msa0261340:three_prime_UTR
GTAACAGCAACCAAAGCCAT+GGG 0.635375 2_2:-59654652 Msa0261340:intron
AGGTCATGGAAATATTCAAG+AGG 0.642540 2_2:+59655317 None:intergenic
ATCAGATGAAAGCTATGTAG+GGG 0.642939 2_2:+59655491 None:intergenic
GCATTCAAGTTCAGGCACAC+CGG 0.643043 2_2:-59653432 Msa0261340:CDS
GCTCTTATGAATCATGGTGA+TGG 0.645607 2_2:-59654441 Msa0261340:CDS
GATGAAATCACTTCTAACTG+AGG 0.646020 2_2:+59655196 None:intergenic
GGATATGGTCAGATTCAATG+AGG 0.656053 2_2:+59655264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATGTATAAATTTTGTT+AGG - chr2_2:59654478-59654497 Msa0261340:intron 10.0%
!!! ATAATGTATAAATTTTGTTA+GGG - chr2_2:59654479-59654498 Msa0261340:intron 10.0%
!!! AAGAATAACAATTTTTAATG+TGG - chr2_2:59653407-59653426 Msa0261340:CDS 15.0%
!!! AGAATAACAATTTTTAATGT+GGG - chr2_2:59653408-59653427 Msa0261340:CDS 15.0%
!! ATCTTATTAAACAACATTAT+TGG - chr2_2:59653556-59653575 Msa0261340:intron 15.0%
!!! TTAATAATTTTTTACCTATG+AGG + chr2_2:59653847-59653866 None:intergenic 15.0%
!! AATATCTCTTATAAAAACTT+TGG + chr2_2:59653879-59653898 None:intergenic 15.0%
!!! GTATTTTACTTATTGATATT+AGG - chr2_2:59653916-59653935 Msa0261340:intron 15.0%
!! TTTATTTACATATGAACAAT+TGG + chr2_2:59654376-59654395 None:intergenic 15.0%
!! GAAAAAAAAGATACAATAAT+AGG - chr2_2:59655188-59655207 Msa0261340:CDS 15.0%
!!! ATATGTATATCTAATCATTT+TGG - chr2_2:59655564-59655583 Msa0261340:five_prime_UTR 15.0%
!!! CATTTTTTTTGTCAAAATCA+CGG - chr2_2:59653329-59653348 Msa0261340:CDS 20.0%
!!! CATTTTAATTTAGATCTCAA+GGG + chr2_2:59653698-59653717 None:intergenic 20.0%
!! CTTGAGATCTAAATTAAAAT+GGG - chr2_2:59653697-59653716 Msa0261340:intron 20.0%
!! ATTATATTGAAGTCACAAAA+AGG - chr2_2:59654130-59654149 Msa0261340:intron 20.0%
!!! TTTTGTTTTTTCAGATGTAA+AGG - chr2_2:59654251-59654270 Msa0261340:CDS 20.0%
!! TTTGCCAATTTATAACATTA+AGG - chr2_2:59654563-59654582 Msa0261340:intron 20.0%
!! TAGTCCTTAATGTTATAAAT+TGG + chr2_2:59654570-59654589 None:intergenic 20.0%
!! TTGAAATATCGAGTTTAATA+TGG - chr2_2:59654727-59654746 Msa0261340:intron 20.0%
!! ATAACAACATTTAATCATTC+TGG - chr2_2:59655113-59655132 Msa0261340:intron 20.0%
!! AACTGAACAAAAAAAAGTTA+AGG - chr2_2:59655164-59655183 Msa0261340:intron 20.0%
!! TTAATGAGAATGTGAAAAAA+AGG - chr2_2:59655228-59655247 Msa0261340:CDS 20.0%
!! CAAATGAATAATAGTATAGT+AGG - chr2_2:59655478-59655497 Msa0261340:five_prime_UTR 20.0%
!! AGATGATAAGCATTGTTATA+GGG + chr2_2:59652972-59652991 None:intergenic 25.0%
!! AAGATGATAAGCATTGTTAT+AGG + chr2_2:59652973-59652992 None:intergenic 25.0%
! TTTGAAAGTAATTTAGTGGA+GGG + chr2_2:59653139-59653158 None:intergenic 25.0%
!!! TTTTGAAAGTAATTTAGTGG+AGG + chr2_2:59653140-59653159 None:intergenic 25.0%
!!! AGGTTTTGAAAGTAATTTAG+TGG + chr2_2:59653143-59653162 None:intergenic 25.0%
!! ATTTTCTTACCAATATTCCT+TGG + chr2_2:59653521-59653540 None:intergenic 25.0%
! TTGTTTAATAAGATTGAGCA+TGG + chr2_2:59653550-59653569 None:intergenic 25.0%
! TTAAACAACATTATTGGACT+TGG - chr2_2:59653562-59653581 Msa0261340:intron 25.0%
! CACTTTCTTTAATAATGCTT+AGG + chr2_2:59653651-59653670 None:intergenic 25.0%
! CTAAGCATTATTAAAGAAAG+TGG - chr2_2:59653649-59653668 Msa0261340:intron 25.0%
!!! CCATTTTAATTTAGATCTCA+AGG + chr2_2:59653699-59653718 None:intergenic 25.0%
! CCTTGAGATCTAAATTAAAA+TGG - chr2_2:59653696-59653715 Msa0261340:intron 25.0%
! GTAAAAAAACTTTACCTCAT+AGG - chr2_2:59653830-59653849 Msa0261340:intron 25.0%
! GACACAAACAATAAAAAGAA+TGG - chr2_2:59653976-59653995 Msa0261340:intron 25.0%
! AAGTAAGGAATGAAAGAAAA+AGG + chr2_2:59654049-59654068 None:intergenic 25.0%
! CTAAACAAATTTGTGAAGTA+AGG + chr2_2:59654064-59654083 None:intergenic 25.0%
!! CTTACTTCACAAATTTGTTT+AGG - chr2_2:59654062-59654081 Msa0261340:CDS 25.0%
! GCTTGATGAAATAACATTAA+AGG - chr2_2:59654084-59654103 Msa0261340:CDS 25.0%
!!! TTTTTCAGATGTAAAGGTTA+TGG - chr2_2:59654257-59654276 Msa0261340:CDS 25.0%
! CAAAATGTAAGAGACTAAAA+GGG + chr2_2:59654517-59654536 None:intergenic 25.0%
! ACAAAATGTAAGAGACTAAA+AGG + chr2_2:59654518-59654537 None:intergenic 25.0%
! TATAAATTGGCAAACGATTA+AGG + chr2_2:59654557-59654576 None:intergenic 25.0%
! AAAAAAGGAAATTTGATCCA+TGG - chr2_2:59655243-59655262 Msa0261340:CDS 25.0%
AATCAGATGAAAGCTATGTA+GGG + chr2_2:59652892-59652911 None:intergenic 30.0%
AAAGAGGAGTGATAAAGAAA+AGG + chr2_2:59652944-59652963 None:intergenic 30.0%
! AATATTCAAGAGGGTTTTCA+AGG + chr2_2:59653055-59653074 None:intergenic 30.0%
AAACATCTTCACAAGTAGTA+AGG + chr2_2:59653085-59653104 None:intergenic 30.0%
!! CATCAAACTCATTTGATTTG+AGG + chr2_2:59653163-59653182 None:intergenic 30.0%
TTTCCTAGCTATCAACTATT+TGG - chr2_2:59653479-59653498 Msa0261340:CDS 30.0%
TATTAGGCTCTTATGAATCA+TGG - chr2_2:59653932-59653951 Msa0261340:intron 30.0%
AATGAAAGAAAAAGGAGTGA+TGG + chr2_2:59654041-59654060 None:intergenic 30.0%
! AAGAAGCATGGATATTGAAA+GGG + chr2_2:59654342-59654361 None:intergenic 30.0%
TTTCAATATCCATGCTTCTT+GGG - chr2_2:59654342-59654361 Msa0261340:CDS 30.0%
AGTTGTGAACATAGATTGTA+TGG - chr2_2:59654643-59654662 Msa0261340:CDS 30.0%
GTTGTGAACATAGATTGTAT+GGG - chr2_2:59654644-59654663 Msa0261340:CDS 30.0%
TTGTGAACATAGATTGTATG+GGG - chr2_2:59654645-59654664 Msa0261340:CDS 30.0%
GTCGTTTAATTAAGATTGGA+TGG + chr2_2:59654754-59654773 None:intergenic 30.0%
GTTGGTCGTTTAATTAAGAT+TGG + chr2_2:59654758-59654777 None:intergenic 30.0%
! ATGTTTTGTATCATTACTGC+AGG - chr2_2:59654854-59654873 Msa0261340:intron 30.0%
GATACAAGATATAGCTAAAG+AGG - chr2_2:59654902-59654921 Msa0261340:CDS 30.0%
ACTTGAATGCACATTAAACA+TGG + chr2_2:59654937-59654956 None:intergenic 30.0%
! TTTAATGTGCATTCAAGTTC+AGG - chr2_2:59654939-59654958 Msa0261340:intron 30.0%
! TTTTCGTCTAACACATTAAC+CGG + chr2_2:59654969-59654988 None:intergenic 30.0%
! AGACGAAAATTTTCTAAGCT+TGG - chr2_2:59654980-59654999 Msa0261340:intron 30.0%
TTGGAAAGTGAAAAAACCAA+CGG - chr2_2:59654999-59655018 Msa0261340:intron 30.0%
!! AAGAGAAGCATTTCAAAAGA+AGG - chr2_2:59655051-59655070 Msa0261340:intron 30.0%
CAGCATTAATCATTCTTGTA+TGG + chr2_2:59655140-59655159 None:intergenic 30.0%
ATAATAGGAAGAGATAGTGA+TGG - chr2_2:59655203-59655222 Msa0261340:CDS 30.0%
! TAAATCTGCTGATTGTGAAA+AGG - chr2_2:59655311-59655330 Msa0261340:CDS 30.0%
AGGAACATGGAAGAAAATAT+TGG - chr2_2:59655331-59655350 Msa0261340:CDS 30.0%
! TTGTATTGTCTGATTTGTAG+TGG - chr2_2:59655428-59655447 Msa0261340:five_prime_UTR 30.0%
TAATAGTATAGTAGGAGTGA+AGG - chr2_2:59655486-59655505 Msa0261340:five_prime_UTR 30.0%
! AGTGAAGGAAGAAATTTTGT+TGG - chr2_2:59655501-59655520 Msa0261340:five_prime_UTR 30.0%
! AAGGAAGAAATTTTGTTGGA+AGG - chr2_2:59655505-59655524 Msa0261340:five_prime_UTR 30.0%
ATCAGATGAAAGCTATGTAG+GGG + chr2_2:59652891-59652910 None:intergenic 35.0%
GAATCAGATGAAAGCTATGT+AGG + chr2_2:59652893-59652912 None:intergenic 35.0%
TTGTTATAGGGAGAGAAAAG+AGG + chr2_2:59652960-59652979 None:intergenic 35.0%
GGTCATGGAAATATTCAAGA+GGG + chr2_2:59653064-59653083 None:intergenic 35.0%
AGGTCATGGAAATATTCAAG+AGG + chr2_2:59653065-59653084 None:intergenic 35.0%
AGTAATTTAGTGGAGGGATA+TGG + chr2_2:59653133-59653152 None:intergenic 35.0%
GATGAAATCACTTCTAACTG+AGG + chr2_2:59653186-59653205 None:intergenic 35.0%
TTTCATCTCTTTGATCTCAC+AGG - chr2_2:59653199-59653218 Msa0261340:three_prime_UTR 35.0%
AACATTCCGATGTGTATGTT+TGG - chr2_2:59653248-59653267 Msa0261340:three_prime_UTR 35.0%
CACAAATGGATCAAAATTGC+AGG + chr2_2:59653457-59653476 None:intergenic 35.0%
ATAGCTAGGAAAGTCACAAA+TGG + chr2_2:59653471-59653490 None:intergenic 35.0%
!! GATCCAAATAGTTGATAGCT+AGG + chr2_2:59653485-59653504 None:intergenic 35.0%
! CAAGAAGCATGGATATTGAA+AGG + chr2_2:59654343-59654362 None:intergenic 35.0%
CTTTCAATATCCATGCTTCT+TGG - chr2_2:59654341-59654360 Msa0261340:CDS 35.0%
GATATTATTCCCAAGAAGCA+TGG + chr2_2:59654354-59654373 None:intergenic 35.0%
AACATAGATTGTATGGGGTA+AGG - chr2_2:59654650-59654669 Msa0261340:intron 35.0%
!! ATTACTGCAGGAAAGTGTTA+TGG - chr2_2:59654866-59654885 Msa0261340:intron 35.0%
CATAGTAGTATGAGCAACAT+TGG + chr2_2:59655027-59655046 None:intergenic 35.0%
GAAATTTGATCCATGGTTTG+TGG - chr2_2:59655250-59655269 Msa0261340:CDS 35.0%
! GTGATTTTATCCACAAACCA+TGG + chr2_2:59655263-59655282 None:intergenic 35.0%
GATTTAATGAAAACCGTACG+AGG + chr2_2:59655297-59655316 None:intergenic 35.0%
!!! ATCGTTTTTTCCTATGTGAG+AGG - chr2_2:59655361-59655380 Msa0261340:five_prime_UTR 35.0%
!! CTTTTTGTTTCCTCTCACAT+AGG + chr2_2:59655374-59655393 None:intergenic 35.0%
TTGTTCTGTCTCTTAGCTTA+TGG - chr2_2:59655455-59655474 Msa0261340:five_prime_UTR 35.0%
TCCACATATTCACACATCCA+TGG - chr2_2:59653022-59653041 Msa0261340:three_prime_UTR 40.0%
TCCATGGATGTGTGAATATG+TGG + chr2_2:59653026-59653045 None:intergenic 40.0%
!! GTTTTCAAGGTCAAACTCCA+TGG + chr2_2:59653042-59653061 None:intergenic 40.0%
CTTCACAAGTAGTAAGGTCA+TGG + chr2_2:59653079-59653098 None:intergenic 40.0%
GGATATGGTCAGATTCAATG+AGG + chr2_2:59653118-59653137 None:intergenic 40.0%
GCGAATCCAAACATACACAT+CGG + chr2_2:59653257-59653276 None:intergenic 40.0%
GATGTGTATGTTTGGATTCG+CGG - chr2_2:59653256-59653275 Msa0261340:three_prime_UTR 40.0%
GCTCTTATGAATCATGGTGA+TGG - chr2_2:59653938-59653957 Msa0261340:intron 40.0%
!! CTTATGAATCATGGTGATGG+TGG - chr2_2:59653941-59653960 Msa0261340:intron 40.0%
!! AGAATGGAAGCACTTGTCTT+AGG - chr2_2:59653992-59654011 Msa0261340:intron 40.0%
!! TTGTCTTAGGAGCACTACAT+TGG - chr2_2:59654005-59654024 Msa0261340:intron 40.0%
CTCATGTGAAGCATAGAGAA+GGG + chr2_2:59654313-59654332 None:intergenic 40.0%
ACTCATGTGAAGCATAGAGA+AGG + chr2_2:59654314-59654333 None:intergenic 40.0%
GTAAGAGACTAAAAGGGAGA+GGG + chr2_2:59654511-59654530 None:intergenic 40.0%
TGTAAGAGACTAAAAGGGAG+AGG + chr2_2:59654512-59654531 None:intergenic 40.0%
TCACGTACTCGAGATATTGT+TGG + chr2_2:59654776-59654795 None:intergenic 40.0%
ATATCTCGAGTACGTGAATG+TGG - chr2_2:59654779-59654798 Msa0261340:intron 40.0%
TATCTCGAGTACGTGAATGT+GGG - chr2_2:59654780-59654799 Msa0261340:intron 40.0%
GCTGATTGTGAAAAGGAACA+TGG - chr2_2:59655318-59655337 Msa0261340:CDS 40.0%
CCAATATTCCTTGGTTAGCG+AGG + chr2_2:59653512-59653531 None:intergenic 45.0%
CCTCGCTAACCAAGGAATAT+TGG - chr2_2:59653509-59653528 Msa0261340:intron 45.0%
TGTAACAGCAACCAAAGCCA+TGG - chr2_2:59653726-59653745 Msa0261340:intron 45.0%
GTAACAGCAACCAAAGCCAT+GGG - chr2_2:59653727-59653746 Msa0261340:intron 45.0%
! AGTTTGTTTGCCCATGGCTT+TGG + chr2_2:59653740-59653759 None:intergenic 45.0%
!! GCAAGTAGTTTGTTTGCCCA+TGG + chr2_2:59653746-59653765 None:intergenic 45.0%
GTACTCTGCTACTGATGTTC+AGG - chr2_2:59653808-59653827 Msa0261340:intron 45.0%
GATGAGGCAGCAACTATAGA+TGG + chr2_2:59654291-59654310 None:intergenic 45.0%
TGAAGCATAGAGAAGGGATG+AGG + chr2_2:59654307-59654326 None:intergenic 45.0%
CATTCATGCAGTCACGACAT+TGG - chr2_2:59654681-59654700 Msa0261340:intron 45.0%
ATCTCGAGTACGTGAATGTG+GGG - chr2_2:59654781-59654800 Msa0261340:intron 45.0%
AAACCGATACCTGTGGGATA+CGG + chr2_2:59654810-59654829 None:intergenic 45.0%
!! ATGAGCAACATTGGTTCCGT+TGG + chr2_2:59655018-59655037 None:intergenic 45.0%
ACTGTAACGTGATCCTCGTA+CGG - chr2_2:59655281-59655300 Msa0261340:CDS 45.0%
!!! ATATTAATTTTTTTTTAAGA+TGG - chr2_2:59653894-59653913 Msa0261340:intron 5.0%
CATGCAGTCACGACATTGGA+TGG - chr2_2:59654685-59654704 Msa0261340:intron 50.0%
TCTCGAGTACGTGAATGTGG+GGG - chr2_2:59654782-59654801 Msa0261340:intron 50.0%
GATCCGTATCCCACAGGTAT+CGG - chr2_2:59654804-59654823 Msa0261340:intron 50.0%
!! TCCCACAGGTATCGGTTTCT+AGG - chr2_2:59654812-59654831 Msa0261340:intron 50.0%
CCCTAGAAACCGATACCTGT+GGG + chr2_2:59654816-59654835 None:intergenic 50.0%
!! CCCACAGGTATCGGTTTCTA+GGG - chr2_2:59654813-59654832 Msa0261340:intron 50.0%
! GCATTCAAGTTCAGGCACAC+CGG - chr2_2:59654947-59654966 Msa0261340:intron 50.0%
GATCGCTTCCTCGCTAACCA+AGG - chr2_2:59653501-59653520 Msa0261340:CDS 55.0%
GCCCTAGAAACCGATACCTG+TGG + chr2_2:59654817-59654836 None:intergenic 55.0%
GTGGGGGATCCGTATCCCAC+AGG - chr2_2:59654798-59654817 Msa0261340:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59652807 59655594 59652807 ID=Msa0261340;Name=Msa0261340
chr2_2 mRNA 59652807 59655594 59652807 ID=Msa0261340-mRNA-1;Parent=Msa0261340;Name=Msa0261340-mRNA-1;_AED=0.20;_eAED=0.20;_QI=234|1|1|1|0.83|0.71|7|478|302
chr2_2 exon 59652807 59653102 59652807 ID=Msa0261340-mRNA-1:exon:18385;Parent=Msa0261340-mRNA-1
chr2_2 exon 59653137 59653525 59653137 ID=Msa0261340-mRNA-1:exon:18384;Parent=Msa0261340-mRNA-1
chr2_2 exon 59654006 59654136 59654006 ID=Msa0261340-mRNA-1:exon:18383;Parent=Msa0261340-mRNA-1
chr2_2 exon 59654250 59654463 59654250 ID=Msa0261340-mRNA-1:exon:18382;Parent=Msa0261340-mRNA-1
chr2_2 exon 59654572 59654667 59654572 ID=Msa0261340-mRNA-1:exon:18381;Parent=Msa0261340-mRNA-1
chr2_2 exon 59654871 59654951 59654871 ID=Msa0261340-mRNA-1:exon:18380;Parent=Msa0261340-mRNA-1
chr2_2 exon 59655181 59655594 59655181 ID=Msa0261340-mRNA-1:exon:18379;Parent=Msa0261340-mRNA-1
chr2_2 five_prime_UTR 59655361 59655594 59655361 ID=Msa0261340-mRNA-1:five_prime_utr;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59655181 59655360 59655181 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59654871 59654951 59654871 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59654572 59654667 59654572 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59654250 59654463 59654250 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59654006 59654136 59654006 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 CDS 59653319 59653525 59653319 ID=Msa0261340-mRNA-1:cds;Parent=Msa0261340-mRNA-1
chr2_2 three_prime_UTR 59653137 59653318 59653137 ID=Msa0261340-mRNA-1:three_prime_utr;Parent=Msa0261340-mRNA-1
chr2_2 three_prime_UTR 59652807 59653102 59652807 ID=Msa0261340-mRNA-1:three_prime_utr;Parent=Msa0261340-mRNA-1
Gene Sequence

>Msa0261340

ATGGAGTTTGACCTTGAAAACCCTCTTGAATATTTCCATGACCTTACTACTTGTGAAGATGTTTCTTCACTCTTCCTCATTGAATCTGACCATATCCCTCCACTAAATTACTTTCAAAACCTCAAATCAAATGAGTTTGATGCCTCAGTTAGAAGTGATTTCATCTCTTTGATCTCACAGTTATCCTGCAATTTTGATCCATTTGTGACTTTCCTAGCTATCAACTATTTGGATCGCTTCCTCGCTAACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAACTACTTGCAGTAACTTGCTTTTCTCTAGCAGTAAAGATGTTGAAAACAGAGTACTCTGCTACTGATGTTCAGGCTCTTATGAATCATGGTGATGGTGGTTTCATTTTTGAGACACAAACAATAAAAAGAATGGAAGCACTTGTCTTAGGAGCACTACATTGGAGAATGCGTTCCATCACTCCTTTTTCTTTCATTCCTTACTTCACAAATTTGTTTAGGCTTGATGAAATAACATTAAAGGTTCTAAAAGATCGAGCTTCTGAAATTATATTGAAGTCACAAAAAGATGTAAAGGTTATGGAATTTAAGCCATCTATAGTTGCTGCCTCATCCCTTCTCTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTGGGAATAATATCCAATTGTTCATATGTAAATAAAGAAAGTGTTATGGAGTGCTATAATGTGATACAAGATATAGCTAAAGAGGAGTACGAGTCCATGTTTAATGTGCATTCAAGTTCAGGCACACCGGTTAATGTGTTAGACGAAAATTTTCTAAGCTTGGAAAGTGAAAAAACCAACGGAACCAATGTTGCTCATACTACTATGATACAAGAGAAGCATTTCAAAAGAAGGAAAATTTAA

Protein sequence

>Msa0261340

MEFDLENPLEYFHDLTTCEDVSSLFLIESDHIPPLNYFQNLKSNEFDASVRSDFISLISQLSCNFDPFVTFLAINYLDRFLANQGILQPKPWANKLLAVTCFSLAVKMLKTEYSATDVQALMNHGDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFTNLFRLDEITLKVLKDRASEIILKSQKDVKVMEFKPSIVAASSLLYASHELFPFQYPCFLGIISNCSYVNKESVMECYNVIQDIAKEEYESMFNVHSSSGTPVNVLDENFLSLESEKTNGTNVAHTTMIQEKHFKRRKI*