AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667510 MtrunA17_Chr4g0006041 47.134 157 67 4 125 269 50 202 2.47e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAATGCTTCTCAAAT+TGG 0.206072 4_4:-7873472 None:intergenic
TTTGGGATTTGGTGCAAAAT+AGG 0.263926 4_4:+7868744 Msa0667510:CDS
ATGGGAAGAACTACAATAAT+TGG 0.273537 4_4:+7868684 Msa0667510:CDS
GTTGCGGATGGCAGACCTTT+AGG 0.312919 4_4:+7873707 Msa0667510:CDS
AATCCAAGACATTTGGGATT+TGG 0.314222 4_4:+7868733 Msa0667510:CDS
ATTTGTCGCACGACCACTAA+TGG 0.316224 4_4:-7868774 None:intergenic
CCAAATGCTGAGATTGAGTT+AGG 0.318672 4_4:+7873591 Msa0667510:CDS
AAACATCTTTCAGAGAATAA+TGG 0.333812 4_4:+7873501 Msa0667510:CDS
TGTTCGGAATCCAAGACATT+TGG 0.350400 4_4:+7868726 Msa0667510:CDS
AACATCTTTCAGAGAATAAT+GGG 0.354100 4_4:+7873502 Msa0667510:CDS
TGATATAACCCTTGTTTGCT+TGG 0.364098 4_4:-7872758 None:intergenic
CCTAACTCAATCTCAGCATT+TGG 0.372392 4_4:-7873591 None:intergenic
GAGAGCCGAAGTGCTCTAAA+AGG 0.378364 4_4:+7868800 Msa0667510:CDS
GTTCGGAATCCAAGACATTT+GGG 0.382062 4_4:+7868727 Msa0667510:CDS
CGTCTACTTGCATCTGAACT+TGG 0.408967 4_4:-7872601 None:intergenic
CTCTCTGTTTCTGTGTCGGT+TGG 0.422209 4_4:-7873430 None:intergenic
GCAAGTAGACGTCATAAATC+TGG 0.428957 4_4:+7872613 Msa0667510:CDS
CTCCTACTTCGCGATGAACT+TGG 0.437490 4_4:-7872673 None:intergenic
AAGCAAACAAGGGTTATATC+AGG 0.438093 4_4:+7872760 Msa0667510:CDS
GCACCAAATCCCAAATGTCT+TGG 0.440236 4_4:-7868736 None:intergenic
TTTGTCGCACGACCACTAAT+GGG 0.440269 4_4:-7868773 None:intergenic
GATGAACTTGGTGATCTTGA+TGG 0.447905 4_4:-7872661 None:intergenic
TCGAGAATAAGAATATTTGC+TGG 0.452394 4_4:-7868662 None:intergenic
GATATAACCCTTGTTTGCTT+GGG 0.465551 4_4:-7872757 None:intergenic
TTTGCTGGGAAGTTTCTGAT+TGG 0.465739 4_4:-7868647 None:intergenic
GCAAATATTCTTATTCTCGA+TGG 0.476484 4_4:+7868665 Msa0667510:CDS
ATGGACTACGACTTACGTAT+TGG 0.477204 4_4:-7872642 None:intergenic
ATATCTCTCTGTTTCTGTGT+CGG 0.485989 4_4:-7873434 None:intergenic
ATAGCTCATCTTCTGCTGTA+AGG 0.487175 4_4:-7873407 None:intergenic
ACATGTCTCGCAGCAGATCC+AGG 0.494438 4_4:+7870020 Msa0667510:CDS
CAAATGCTGAGATTGAGTTA+GGG 0.494654 4_4:+7873592 Msa0667510:CDS
TCCGCAACCTGTGTTTGCAT+TGG 0.499695 4_4:-7873692 None:intergenic
AAGCAAATGAAGGTGATGTT+CGG 0.510231 4_4:+7868710 Msa0667510:CDS
CAAATATTCTTATTCTCGAT+GGG 0.510403 4_4:+7868666 Msa0667510:CDS
TCCAATGCAAACACAGGTTG+CGG 0.514202 4_4:+7873691 Msa0667510:CDS
ATTTGAGAAGCATTAAGAAA+CGG 0.519890 4_4:+7873475 Msa0667510:CDS
AATAGGTTAGCTCCCATTAG+TGG 0.529207 4_4:+7868761 Msa0667510:CDS
TGCTGCATCAGATATTTCAA+TGG 0.551180 4_4:-7873544 None:intergenic
CGAGAATAAGAATATTTGCT+GGG 0.558459 4_4:-7868661 None:intergenic
GTAGCATGCCCAAGCAAACA+AGG 0.566760 4_4:+7872749 Msa0667510:CDS
GACTACGACTTACGTATTGG+CGG 0.568651 4_4:-7872639 None:intergenic
TCAATGTCAATTCCTTCTTG+TGG 0.574145 4_4:-7873369 None:intergenic
TAATTGGAGCAAGCAAATGA+AGG 0.591040 4_4:+7868700 Msa0667510:CDS
AAATGCTGAGATTGAGTTAG+GGG 0.595664 4_4:+7873593 Msa0667510:CDS
ACTACGACTTACGTATTGGC+GGG 0.596278 4_4:-7872638 None:intergenic
CACCAAGTTCATCGCGAAGT+AGG 0.601770 4_4:+7872671 Msa0667510:CDS
ATGCAAACACAGGTTGCGGA+TGG 0.601836 4_4:+7873695 Msa0667510:CDS
AATGCTGAGATTGAGTTAGG+GGG 0.647383 4_4:+7873594 Msa0667510:CDS
TACTTGTCCAATGCAAACAC+AGG 0.647609 4_4:+7873685 Msa0667510:CDS
TGGGACGTTCTCAATTGATG+AGG 0.654936 4_4:+7873521 Msa0667510:CDS
ATGCTGAGATTGAGTTAGGG+GGG 0.660841 4_4:+7873595 Msa0667510:CDS
TAGCATGCCCAAGCAAACAA+GGG 0.691614 4_4:+7872750 Msa0667510:CDS
TAATGCGTGCTGTATGACGT+CGG 0.710297 4_4:-7872726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAATAAAAAAAT+GGG - chr4_4:7869338-7869357 None:intergenic 0.0%
!! AAATATATATATATATATAT+TGG + chr4_4:7872431-7872450 Msa0667510:intron 0.0%
!! AATATATATATATATATATT+GGG + chr4_4:7872432-7872451 Msa0667510:intron 0.0%
!!! CAAAAATATCTTTTTTAAAT+TGG - chr4_4:7869604-7869623 None:intergenic 10.0%
!! TAAAATAGATAAAAACAAAA+AGG - chr4_4:7871629-7871648 None:intergenic 10.0%
!!! TATTTTAAAAAAAATGAAGA+TGG + chr4_4:7871642-7871661 Msa0667510:intron 10.0%
!!! ATTTTAAAAAAAATGAAGAT+GGG + chr4_4:7871643-7871662 Msa0667510:intron 10.0%
!!! AACATTTTTTTTGCTATAAA+AGG + chr4_4:7868839-7868858 Msa0667510:intron 15.0%
!!! TGTTTTTTGTATTAACTATT+CGG + chr4_4:7868940-7868959 Msa0667510:intron 15.0%
!! ATTATCCAAAAAAAAGAAAA+CGG + chr4_4:7869405-7869424 Msa0667510:intron 15.0%
!! TAATGTTTAATAACTCAATT+GGG - chr4_4:7869558-7869577 None:intergenic 15.0%
!! ATAAAGAAGAAGAAATATTA+AGG - chr4_4:7870150-7870169 None:intergenic 15.0%
!!! TATATATTGATTGATGATTT+CGG + chr4_4:7870225-7870244 Msa0667510:intron 15.0%
!! AAATGTAAAAAAATAGATAG+CGG + chr4_4:7871072-7871091 Msa0667510:intron 15.0%
!! TATTAGATCAAATACTATAA+AGG + chr4_4:7871142-7871161 Msa0667510:intron 15.0%
!!! AATAAGAAATCTTGTTATTA+AGG + chr4_4:7871371-7871390 Msa0667510:intron 15.0%
!!! CCAAATTTTTGTTTTTTATT+AGG - chr4_4:7871804-7871823 None:intergenic 15.0%
!! CCTAATAAAAAACAAAAATT+TGG + chr4_4:7871801-7871820 Msa0667510:intron 15.0%
!! TGAATATGAGTTTATAAATA+AGG - chr4_4:7872882-7872901 None:intergenic 15.0%
!! AAAAAAAAAAAAACTTTGCA+AGG + chr4_4:7873261-7873280 Msa0667510:intron 15.0%
!! AAAAAAAAAAAACTTTGCAA+GGG + chr4_4:7873262-7873281 Msa0667510:intron 15.0%
!! TTGAACTTGATAAATTTCAT+GGG - chr4_4:7868884-7868903 None:intergenic 20.0%
!! ATTTACCTCTTAATATGAAT+AGG + chr4_4:7869484-7869503 Msa0667510:intron 20.0%
!! GATATTGTATTATATACACA+TGG - chr4_4:7869536-7869555 None:intergenic 20.0%
!! GTAATGTTTAATAACTCAAT+TGG - chr4_4:7869559-7869578 None:intergenic 20.0%
!!! GATATTTTAGTATATCTCAT+TGG - chr4_4:7869638-7869657 None:intergenic 20.0%
!! TTACAATATTAATGCTTAGT+TGG - chr4_4:7869730-7869749 None:intergenic 20.0%
!! ACTATATCTAATATCACTTT+GGG - chr4_4:7869948-7869967 None:intergenic 20.0%
!! AACTATATCTAATATCACTT+TGG - chr4_4:7869949-7869968 None:intergenic 20.0%
!! CATCAATCAATATATAAAGA+TGG - chr4_4:7870221-7870240 None:intergenic 20.0%
!!! ATATATTGATTGATGATTTC+GGG + chr4_4:7870226-7870245 Msa0667510:intron 20.0%
!!! ACTCATATTTTTTTCAACTT+TGG - chr4_4:7870374-7870393 None:intergenic 20.0%
!! AAAGTTGAAAAAAATATGAG+TGG + chr4_4:7870373-7870392 Msa0667510:intron 20.0%
!! TCATTCAACATAACAAAAAT+TGG + chr4_4:7870436-7870455 Msa0667510:intron 20.0%
!! TTCTTAGTAACATTATATAG+CGG + chr4_4:7871024-7871043 Msa0667510:intron 20.0%
!!! CATTTTTTTTTACTTACAGA+AGG - chr4_4:7871057-7871076 None:intergenic 20.0%
!!! GAAAAGCATTATTAATAACA+TGG + chr4_4:7871665-7871684 Msa0667510:intron 20.0%
!! AAACTAAGAAATTGATATCA+TGG - chr4_4:7871754-7871773 None:intergenic 20.0%
!!! TTTTGATACTCTTTACTATA+TGG - chr4_4:7872329-7872348 None:intergenic 20.0%
!! GATATTGTATATTATATGCA+GGG - chr4_4:7872480-7872499 None:intergenic 20.0%
!! AGATATTGTATATTATATGC+AGG - chr4_4:7872481-7872500 None:intergenic 20.0%
! CAAATATTCTTATTCTCGAT+GGG + chr4_4:7868666-7868685 Msa0667510:CDS 25.0%
! AGCAAAAAAAATGTTCACTT+TGG - chr4_4:7868834-7868853 None:intergenic 25.0%
!!! TTTTGCTATAAAAGGTTTGA+TGG + chr4_4:7868847-7868866 Msa0667510:intron 25.0%
! GTTGAACTTGATAAATTTCA+TGG - chr4_4:7868885-7868904 None:intergenic 25.0%
!! AAAAAATCTGATTTCTGGAT+AGG - chr4_4:7869034-7869053 None:intergenic 25.0%
! GTTTGAAAAAATCTGATTTC+TGG - chr4_4:7869039-7869058 None:intergenic 25.0%
! ACAGCTTAATAACATATGAT+TGG - chr4_4:7869160-7869179 None:intergenic 25.0%
!! TGTGTTTACTGTTTTCTTTT+GGG + chr4_4:7869267-7869286 Msa0667510:intron 25.0%
!!! TTTTTTTTGGATAATAGCAC+TGG - chr4_4:7869400-7869419 None:intergenic 25.0%
! ATATGAATAGGTGAAGAATT+CGG + chr4_4:7869496-7869515 Msa0667510:intron 25.0%
!! GCTATATCTTTAAATTTTCG+AGG - chr4_4:7869694-7869713 None:intergenic 25.0%
! CTTAGTTGGTCAAATTTATT+AGG - chr4_4:7869716-7869735 None:intergenic 25.0%
! GTTTAAGGACATATATTTCA+GGG - chr4_4:7869894-7869913 None:intergenic 25.0%
! TGTTTAAGGACATATATTTC+AGG - chr4_4:7869895-7869914 None:intergenic 25.0%
! ATTGCTTATTTGCTTGTTTA+AGG - chr4_4:7869909-7869928 None:intergenic 25.0%
!! ATATCACTTTGGGTTTAATT+CGG - chr4_4:7869938-7869957 None:intergenic 25.0%
! TTCCTTCGAAATTATAGATT+TGG + chr4_4:7869972-7869991 Msa0667510:intron 25.0%
!!! GCACTTTTTTAAAATATGAG+TGG + chr4_4:7870051-7870070 Msa0667510:intron 25.0%
! ACATAATAACATTCAAGGTA+GGG - chr4_4:7870180-7870199 None:intergenic 25.0%
! TACATAATAACATTCAAGGT+AGG - chr4_4:7870181-7870200 None:intergenic 25.0%
! AGTCTACATAATAACATTCA+AGG - chr4_4:7870185-7870204 None:intergenic 25.0%
! TGAATGTTATTATGTAGACT+TGG + chr4_4:7870185-7870204 Msa0667510:intron 25.0%
!! ATCCCTATTTTCAAAGTAAA+TGG + chr4_4:7870319-7870338 Msa0667510:intron 25.0%
!! CTCCATTTACTTTGAAAATA+GGG - chr4_4:7870324-7870343 None:intergenic 25.0%
!! TCTCCATTTACTTTGAAAAT+AGG - chr4_4:7870325-7870344 None:intergenic 25.0%
!! TATTTTCAAAGTAAATGGAG+AGG + chr4_4:7870324-7870343 Msa0667510:intron 25.0%
!!! CATATTTTTTTCAACTTTGG+AGG - chr4_4:7870371-7870390 None:intergenic 25.0%
! CACATGAATTATAGCTATAA+GGG - chr4_4:7870517-7870536 None:intergenic 25.0%
! TAAACTAATATGCTTTGTAG+AGG + chr4_4:7870587-7870606 Msa0667510:intron 25.0%
! CACATATGGCATATTATAAT+TGG + chr4_4:7870881-7870900 Msa0667510:intron 25.0%
! GACACAAACATATATTTAAC+AGG + chr4_4:7871326-7871345 Msa0667510:intron 25.0%
!!! AGAAATCTTGTTATTAAGGA+AGG + chr4_4:7871375-7871394 Msa0667510:intron 25.0%
!!! GAAATCTTGTTATTAAGGAA+GGG + chr4_4:7871376-7871395 Msa0667510:intron 25.0%
!!! TTAAGCATTGTGTTTTTTTG+AGG + chr4_4:7871423-7871442 Msa0667510:intron 25.0%
! TCATCTACATAAATCAAAGT+CGG + chr4_4:7871492-7871511 Msa0667510:intron 25.0%
! AAACAAAAATTTGGTAAGTG+TGG + chr4_4:7871810-7871829 Msa0667510:intron 25.0%
!! TTTTATACATATCCTCTTAG+AGG + chr4_4:7871877-7871896 Msa0667510:intron 25.0%
! AAAGCAAGTATATAATCCAA+TGG + chr4_4:7872082-7872101 Msa0667510:intron 25.0%
! AACGAACAAATTATAACCAT+TGG - chr4_4:7872101-7872120 None:intergenic 25.0%
! TATCAAAATAACTTGAGCAA+AGG + chr4_4:7872341-7872360 Msa0667510:intron 25.0%
! ATCAAAATAACTTGAGCAAA+GGG + chr4_4:7872342-7872361 Msa0667510:intron 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG + chr4_4:7872379-7872398 Msa0667510:intron 25.0%
!! AGTTCACACATTTTTAAATG+TGG + chr4_4:7872406-7872425 Msa0667510:intron 25.0%
! ATATATATATTGGGTATCCA+AGG + chr4_4:7872441-7872460 Msa0667510:intron 25.0%
!!! ATATTTTATCTCACTTTTGC+AGG + chr4_4:7872578-7872597 Msa0667510:intron 25.0%
!!! TTACTTTTACTTTGCATTGT+AGG - chr4_4:7872703-7872722 None:intergenic 25.0%
!! ACACAAATATGTGATTTTGT+TGG - chr4_4:7873331-7873350 None:intergenic 25.0%
! TTTCTTAATGCTTCTCAAAT+TGG - chr4_4:7873475-7873494 None:intergenic 25.0%
!!! ATTTGAGAAGCATTAAGAAA+CGG + chr4_4:7873475-7873494 Msa0667510:CDS 25.0%
! AAACATCTTTCAGAGAATAA+TGG + chr4_4:7873501-7873520 Msa0667510:CDS 25.0%
! AACATCTTTCAGAGAATAAT+GGG + chr4_4:7873502-7873521 Msa0667510:CDS 25.0%
CGAGAATAAGAATATTTGCT+GGG - chr4_4:7868664-7868683 None:intergenic 30.0%
TCGAGAATAAGAATATTTGC+TGG - chr4_4:7868665-7868684 None:intergenic 30.0%
GCAAATATTCTTATTCTCGA+TGG + chr4_4:7868665-7868684 Msa0667510:CDS 30.0%
ATGGGAAGAACTACAATAAT+TGG + chr4_4:7868684-7868703 Msa0667510:CDS 30.0%
! TAATCAACCTTTTCCGATTA+GGG - chr4_4:7869245-7869264 None:intergenic 30.0%
! GTGTGTTTACTGTTTTCTTT+TGG + chr4_4:7869266-7869285 Msa0667510:intron 30.0%
AAGAACAGTAATATCATGCA+AGG - chr4_4:7869299-7869318 None:intergenic 30.0%
! TGGAACCGTTTTCTTTTTTT+TGG - chr4_4:7869413-7869432 None:intergenic 30.0%
ACAACACATCTATTGTTTGT+TGG - chr4_4:7869433-7869452 None:intergenic 30.0%
!!! AGTTTTTTCAAGTAGTCTAG+TGG + chr4_4:7869455-7869474 Msa0667510:intron 30.0%
CTTCACCTATTCATATTAAG+AGG - chr4_4:7869492-7869511 None:intergenic 30.0%
TATGAATAGGTGAAGAATTC+GGG + chr4_4:7869497-7869516 Msa0667510:intron 30.0%
TGTTCTAGTCCAAAATGAAA+TGG + chr4_4:7869777-7869796 Msa0667510:intron 30.0%
GTTCTAGTCCAAAATGAAAT+GGG + chr4_4:7869778-7869797 Msa0667510:intron 30.0%
TGCCAAATCTATAATTTCGA+AGG - chr4_4:7869977-7869996 None:intergenic 30.0%
!! AGACATGTCTTTTGTTTGAT+TGG - chr4_4:7870008-7870027 None:intergenic 30.0%
! AAAAAAGTGCAAAGTATACC+TGG - chr4_4:7870041-7870060 None:intergenic 30.0%
GCACATGAATTATAGCTATA+AGG - chr4_4:7870518-7870537 None:intergenic 30.0%
ATAATGTTTAACCCTGTTGA+CGG - chr4_4:7870729-7870748 None:intergenic 30.0%
! AAAAATGCTATTTGAAGCGA+AGG + chr4_4:7870839-7870858 Msa0667510:intron 30.0%
GCTAAATGTTGAATTGTCAT+TGG + chr4_4:7870937-7870956 Msa0667510:intron 30.0%
TTGATTTATGTAGATGAAGC+AGG - chr4_4:7871489-7871508 None:intergenic 30.0%
TGGATGTTATGGTTGTTATA+AGG - chr4_4:7871579-7871598 None:intergenic 30.0%
AAACAAAAAGGTTCCCTATT+TGG - chr4_4:7871617-7871636 None:intergenic 30.0%
! AATTTGGTAAGTGTGGTTTT+TGG + chr4_4:7871817-7871836 Msa0667510:intron 30.0%
ATGAGAATGAGTTACAAAAC+AGG - chr4_4:7871848-7871867 None:intergenic 30.0%
GGTACACAATTTAAACATAG+AGG + chr4_4:7872180-7872199 Msa0667510:intron 30.0%
GTCTAAATAGTGTTCAAATG+TGG + chr4_4:7872237-7872256 Msa0667510:intron 30.0%
AAACTCTCTTTGCTCAATAA+TGG - chr4_4:7872293-7872312 None:intergenic 30.0%
! TGCTATATTTTGTCTGATGT+CGG + chr4_4:7872902-7872921 Msa0667510:intron 30.0%
TGGTTCATAGACATAAATTG+TGG + chr4_4:7872956-7872975 Msa0667510:intron 30.0%
GGTTCATAGACATAAATTGT+GGG + chr4_4:7872957-7872976 Msa0667510:intron 30.0%
TGATACCATCTTAAAAATCG+TGG + chr4_4:7873035-7873054 Msa0667510:intron 30.0%
TAATTGGAGCAAGCAAATGA+AGG + chr4_4:7868700-7868719 Msa0667510:CDS 35.0%
AAGCAAATGAAGGTGATGTT+CGG + chr4_4:7868710-7868729 Msa0667510:CDS 35.0%
! AATCCAAGACATTTGGGATT+TGG + chr4_4:7868733-7868752 Msa0667510:CDS 35.0%
!! TTTGGGATTTGGTGCAAAAT+AGG + chr4_4:7868744-7868763 Msa0667510:CDS 35.0%
ATCAAGTTCAACACCATGAT+TGG + chr4_4:7868893-7868912 Msa0667510:intron 35.0%
CTATTCGGTTCATAGTAGAA+CGG + chr4_4:7868955-7868974 Msa0667510:intron 35.0%
TATTCGGTTCATAGTAGAAC+GGG + chr4_4:7868956-7868975 Msa0667510:intron 35.0%
!! TGATTGGTCTTGAGAACTAT+TGG - chr4_4:7869144-7869163 None:intergenic 35.0%
! CTAATCAACCTTTTCCGATT+AGG - chr4_4:7869246-7869265 None:intergenic 35.0%
! CTAATCGGAAAAGGTTGATT+AGG + chr4_4:7869244-7869263 Msa0667510:intron 35.0%
ATGAATAGGTGAAGAATTCG+GGG + chr4_4:7869498-7869517 Msa0667510:intron 35.0%
TCTTAAGACGAAACAAGAGT+AGG + chr4_4:7869656-7869675 Msa0667510:intron 35.0%
CAGGGTTTATATTAACGAAG+AGG - chr4_4:7869876-7869895 None:intergenic 35.0%
TTGCATAGTTGAATGACATG+TGG - chr4_4:7870289-7870308 None:intergenic 35.0%
ACATGTCATTCAACTATGCA+AGG + chr4_4:7870288-7870307 Msa0667510:intron 35.0%
GTTATGTTGAATGAGAGAGA+GGG - chr4_4:7870430-7870449 None:intergenic 35.0%
TGTTATGTTGAATGAGAGAG+AGG - chr4_4:7870431-7870450 None:intergenic 35.0%
!! AGTCTATATCCTTTTGGGAA+TGG - chr4_4:7870474-7870493 None:intergenic 35.0%
! GAGGAAGTCTATATCCTTTT+GGG - chr4_4:7870479-7870498 None:intergenic 35.0%
! AGAGGAAGTCTATATCCTTT+TGG - chr4_4:7870480-7870499 None:intergenic 35.0%
ACCAATAGGCAAAGAAACAA+CGG + chr4_4:7870694-7870713 Msa0667510:intron 35.0%
! CAAGCGAATTGATTCACATA+TGG + chr4_4:7870867-7870886 Msa0667510:intron 35.0%
TCAACATTTAGCAGCAAACA+TGG - chr4_4:7870929-7870948 None:intergenic 35.0%
AAGAGACGCATAAGATGTAT+AGG + chr4_4:7871258-7871277 Msa0667510:intron 35.0%
CAATGCTTAATGTAACAGCT+TGG - chr4_4:7871413-7871432 None:intergenic 35.0%
! TTTGGTTTAAGGCAGAAGTT+TGG - chr4_4:7871599-7871618 None:intergenic 35.0%
ACTTCTGCCTTAAACCAAAT+AGG + chr4_4:7871600-7871619 Msa0667510:intron 35.0%
CTTCTGCCTTAAACCAAATA+GGG + chr4_4:7871601-7871620 Msa0667510:intron 35.0%
! AAGGTTCCCTATTTGGTTTA+AGG - chr4_4:7871610-7871629 None:intergenic 35.0%
!! ATCCTCTTAGAGGTCTTATT+TGG + chr4_4:7871887-7871906 Msa0667510:intron 35.0%
!! TCCTCTTAGAGGTCTTATTT+GGG + chr4_4:7871888-7871907 Msa0667510:intron 35.0%
! TCCTTTAACCATGTCTTGTT+TGG + chr4_4:7872158-7872177 Msa0667510:intron 35.0%
!! CCTTTAACCATGTCTTGTTT+GGG + chr4_4:7872159-7872178 Msa0667510:intron 35.0%
CTCAATAATGGTGATAGAAG+GGG - chr4_4:7872281-7872300 None:intergenic 35.0%
GCTCAATAATGGTGATAGAA+GGG - chr4_4:7872282-7872301 None:intergenic 35.0%
TGCTCAATAATGGTGATAGA+AGG - chr4_4:7872283-7872302 None:intergenic 35.0%
TTGTCAAGTAGTTTAGTGGT+CGG + chr4_4:7872383-7872402 Msa0667510:intron 35.0%
CTCTGTGAGTTTAATTCAGT+TGG - chr4_4:7872507-7872526 None:intergenic 35.0%
! GATATAACCCTTGTTTGCTT+GGG - chr4_4:7872760-7872779 None:intergenic 35.0%
! TGATATAACCCTTGTTTGCT+TGG - chr4_4:7872761-7872780 None:intergenic 35.0%
AAGCAAACAAGGGTTATATC+AGG + chr4_4:7872760-7872779 Msa0667510:CDS 35.0%
AATCCATATACCTCACAAAC+CGG - chr4_4:7872857-7872876 None:intergenic 35.0%
TCATAGACATAAATTGTGGG+TGG + chr4_4:7872960-7872979 Msa0667510:intron 35.0%
!! CTCAACCACGATTTTTAAGA+TGG - chr4_4:7873043-7873062 None:intergenic 35.0%
CACCACAAAATCAGTTTGTA+AGG + chr4_4:7873073-7873092 Msa0667510:intron 35.0%
!! CACCTTACAAACTGATTTTG+TGG - chr4_4:7873078-7873097 None:intergenic 35.0%
TCAATGTCAATTCCTTCTTG+TGG - chr4_4:7873372-7873391 None:intergenic 35.0%
!! ATATCTCTCTGTTTCTGTGT+CGG - chr4_4:7873437-7873456 None:intergenic 35.0%
TGCTGCATCAGATATTTCAA+TGG - chr4_4:7873547-7873566 None:intergenic 35.0%
CAAATGCTGAGATTGAGTTA+GGG + chr4_4:7873592-7873611 Msa0667510:CDS 35.0%
AAATGCTGAGATTGAGTTAG+GGG + chr4_4:7873593-7873612 Msa0667510:CDS 35.0%
TTTGCTGGGAAGTTTCTGAT+TGG - chr4_4:7868650-7868669 None:intergenic 40.0%
TGTTCGGAATCCAAGACATT+TGG + chr4_4:7868726-7868745 Msa0667510:CDS 40.0%
GTTCGGAATCCAAGACATTT+GGG + chr4_4:7868727-7868746 Msa0667510:CDS 40.0%
! AATAGGTTAGCTCCCATTAG+TGG + chr4_4:7868761-7868780 Msa0667510:CDS 40.0%
!!! TATCGCCTTTTAGAGCACTT+CGG - chr4_4:7868808-7868827 None:intergenic 40.0%
!! TCAACACCATGATTGGTTTG+CGG + chr4_4:7868900-7868919 Msa0667510:intron 40.0%
ATTCGGTTCATAGTAGAACG+GGG + chr4_4:7868957-7868976 Msa0667510:intron 40.0%
! GGGTTTGATAATCCAGAGTT+CGG + chr4_4:7868977-7868996 Msa0667510:intron 40.0%
! ACCCTAGTTACCTTTTACAC+TGG + chr4_4:7869201-7869220 Msa0667510:intron 40.0%
GCCAGTGTAAAAGGTAACTA+GGG - chr4_4:7869205-7869224 None:intergenic 40.0%
TGCCAGTGTAAAAGGTAACT+AGG - chr4_4:7869206-7869225 None:intergenic 40.0%
! GTGCACATCCCATTTCATTT+TGG - chr4_4:7869789-7869808 None:intergenic 40.0%
! GAGAGGGTATGTTTCAAAGT+GGG - chr4_4:7870414-7870433 None:intergenic 40.0%
! AGAGAGGGTATGTTTCAAAG+TGG - chr4_4:7870415-7870434 None:intergenic 40.0%
TGAGAGAATCCATTCCCAAA+AGG + chr4_4:7870462-7870481 Msa0667510:intron 40.0%
TGATGCATTCTAGTAGACCT+TGG + chr4_4:7870660-7870679 Msa0667510:intron 40.0%
GATGCATTCTAGTAGACCTT+GGG + chr4_4:7870661-7870680 Msa0667510:intron 40.0%
! ATTGGTCTATCTTCTTCCCA+AGG - chr4_4:7870680-7870699 None:intergenic 40.0%
TGGGAAGAAGATAGACCAAT+AGG + chr4_4:7870680-7870699 Msa0667510:intron 40.0%
!! TCCGTTGTTTCTTTGCCTAT+TGG - chr4_4:7870698-7870717 None:intergenic 40.0%
TAGCAGCAAACATGGTGAAT+TGG - chr4_4:7870921-7870940 None:intergenic 40.0%
!!! GTCAGCACGCATTGTTTTTT+TGG + chr4_4:7871463-7871482 Msa0667510:intron 40.0%
AGGCAGAAGTTTGGATGTTA+TGG - chr4_4:7871590-7871609 None:intergenic 40.0%
!! CCTCTTAGAGGTCTTATTTG+GGG + chr4_4:7871889-7871908 Msa0667510:intron 40.0%
TAGTGCGAACAAATACAGTG+CGG + chr4_4:7871982-7872001 Msa0667510:intron 40.0%
CCCAAACAAGACATGGTTAA+AGG - chr4_4:7872162-7872181 None:intergenic 40.0%
TTGTGTACCCAAACAAGACA+TGG - chr4_4:7872169-7872188 None:intergenic 40.0%
AGAAGGGGAGAATATTGTGT+TGG - chr4_4:7872266-7872285 None:intergenic 40.0%
GCAAGTAGACGTCATAAATC+TGG + chr4_4:7872613-7872632 Msa0667510:CDS 40.0%
! ATGGACTACGACTTACGTAT+TGG - chr4_4:7872645-7872664 None:intergenic 40.0%
! GATGAACTTGGTGATCTTGA+TGG - chr4_4:7872664-7872683 None:intergenic 40.0%
! TGCAGTTTTCCAAGAAATCG+TGG + chr4_4:7872828-7872847 Msa0667510:intron 40.0%
TTCCAAGAAATCGTGGTTAC+CGG + chr4_4:7872835-7872854 Msa0667510:intron 40.0%
!! TTACCGGTTTGTGAGGTATA+TGG + chr4_4:7872851-7872870 Msa0667510:intron 40.0%
TCTGATAGCAGATGACCTAA+TGG + chr4_4:7872997-7873016 Msa0667510:intron 40.0%
! GCAGATGACCTAATGGATAT+TGG + chr4_4:7873004-7873023 Msa0667510:intron 40.0%
! TGACCTAATGGATATTGGAG+AGG + chr4_4:7873009-7873028 Msa0667510:intron 40.0%
ACTTTGCAAGGGACTAAAAC+TGG + chr4_4:7873273-7873292 Msa0667510:intron 40.0%
! CAACAATTTTCGCCACAAGA+AGG + chr4_4:7873357-7873376 Msa0667510:CDS 40.0%
ATAGCTCATCTTCTGCTGTA+AGG - chr4_4:7873410-7873429 None:intergenic 40.0%
CCTAACTCAATCTCAGCATT+TGG - chr4_4:7873594-7873613 None:intergenic 40.0%
CCAAATGCTGAGATTGAGTT+AGG + chr4_4:7873591-7873610 Msa0667510:CDS 40.0%
AATGCTGAGATTGAGTTAGG+GGG + chr4_4:7873594-7873613 Msa0667510:CDS 40.0%
TACTTGTCCAATGCAAACAC+AGG + chr4_4:7873685-7873704 Msa0667510:CDS 40.0%
GCACCAAATCCCAAATGTCT+TGG - chr4_4:7868739-7868758 None:intergenic 45.0%
TTTGTCGCACGACCACTAAT+GGG - chr4_4:7868776-7868795 None:intergenic 45.0%
ATTTGTCGCACGACCACTAA+TGG - chr4_4:7868777-7868796 None:intergenic 45.0%
TGATGACCGCAAACCAATCA+TGG - chr4_4:7868909-7868928 None:intergenic 45.0%
TAATCCAGAGTTCGGCTGTA+TGG + chr4_4:7868985-7869004 Msa0667510:intron 45.0%
ACAGCTCATGCCAGTGTAAA+AGG - chr4_4:7869214-7869233 None:intergenic 45.0%
AGAGTGACCCTAATCGGAAA+AGG + chr4_4:7869235-7869254 Msa0667510:intron 45.0%
GTTGAATGACATGTGGAGAG+AGG - chr4_4:7870282-7870301 None:intergenic 45.0%
GCTATAAGGGACATCACAAG+AGG - chr4_4:7870504-7870523 None:intergenic 45.0%
TGTAGAGGATCTGAAAGCGA+TGG + chr4_4:7870602-7870621 Msa0667510:intron 45.0%
TCTGAAAGCGATGGAGAAAG+TGG + chr4_4:7870611-7870630 Msa0667510:intron 45.0%
AGAATGCATCAACTCCTCCA+CGG - chr4_4:7870651-7870670 None:intergenic 45.0%
AGGCAAAGAAACAACGGAGA+AGG + chr4_4:7870700-7870719 Msa0667510:intron 45.0%
CAGCAAACATGGTGAATTGG+CGG - chr4_4:7870918-7870937 None:intergenic 45.0%
CCCCAAATAAGACCTCTAAG+AGG - chr4_4:7871892-7871911 None:intergenic 45.0%
AGGGATCAGTGTTCAAACCT+TGG - chr4_4:7872461-7872480 None:intergenic 45.0%
CGTCTACTTGCATCTGAACT+TGG - chr4_4:7872604-7872623 None:intergenic 45.0%
! ACTACGACTTACGTATTGGC+GGG - chr4_4:7872641-7872660 None:intergenic 45.0%
GACTACGACTTACGTATTGG+CGG - chr4_4:7872642-7872661 None:intergenic 45.0%
TAATGCGTGCTGTATGACGT+CGG - chr4_4:7872729-7872748 None:intergenic 45.0%
TAGCATGCCCAAGCAAACAA+GGG + chr4_4:7872750-7872769 Msa0667510:CDS 45.0%
AACCGGTAACCACGATTTCT+TGG - chr4_4:7872840-7872859 None:intergenic 45.0%
TGAACCAAGCTCAATAGTGC+TGG - chr4_4:7872943-7872962 None:intergenic 45.0%
GAGCCTCTCCAATATCCATT+AGG - chr4_4:7873015-7873034 None:intergenic 45.0%
TGGGACGTTCTCAATTGATG+AGG + chr4_4:7873521-7873540 Msa0667510:CDS 45.0%
ATGCTGAGATTGAGTTAGGG+GGG + chr4_4:7873595-7873614 Msa0667510:CDS 45.0%
TCCAATGCAAACACAGGTTG+CGG + chr4_4:7873691-7873710 Msa0667510:CDS 45.0%
!!! GTTTTTTTATAATAAAAAAA+TGG - chr4_4:7869339-7869358 None:intergenic 5.0%
!!! AAAAATATCTTTTTTAAATT+GGG - chr4_4:7869603-7869622 None:intergenic 5.0%
! GAGAGCCGAAGTGCTCTAAA+AGG + chr4_4:7868800-7868819 Msa0667510:CDS 50.0%
CTTACCATACAGCCGAACTC+TGG - chr4_4:7868992-7869011 None:intergenic 50.0%
GCTGTGAGAGTGACCCTAAT+CGG + chr4_4:7869229-7869248 Msa0667510:intron 50.0%
AGGGACATCACAAGAGGAAG+AGG - chr4_4:7870498-7870517 None:intergenic 50.0%
! TGGCTCTTTTAGTACGACCG+TGG + chr4_4:7870631-7870650 Msa0667510:intron 50.0%
! CTCTTTTAGTACGACCGTGG+AGG + chr4_4:7870634-7870653 Msa0667510:intron 50.0%
GGAGAAGGAATCCGTCAACA+GGG + chr4_4:7870715-7870734 Msa0667510:intron 50.0%
CACCAAGTTCATCGCGAAGT+AGG + chr4_4:7872671-7872690 Msa0667510:CDS 50.0%
CTCCTACTTCGCGATGAACT+TGG - chr4_4:7872676-7872695 None:intergenic 50.0%
GTAGCATGCCCAAGCAAACA+AGG + chr4_4:7872749-7872768 Msa0667510:CDS 50.0%
!! ATCGTGGTTACCGGTTTGTG+AGG + chr4_4:7872844-7872863 Msa0667510:intron 50.0%
!! TCAATAGTGCTGGTCGTGAG+GGG - chr4_4:7872933-7872952 None:intergenic 50.0%
!! CTCAATAGTGCTGGTCGTGA+GGG - chr4_4:7872934-7872953 None:intergenic 50.0%
ACGACCAGCACTATTGAGCT+TGG + chr4_4:7872936-7872955 Msa0667510:intron 50.0%
!! CTCTCTGTTTCTGTGTCGGT+TGG - chr4_4:7873433-7873452 None:intergenic 50.0%
GATTGAGTTAGGGGGGCAAA+TGG + chr4_4:7873602-7873621 Msa0667510:CDS 50.0%
TCCGCAACCTGTGTTTGCAT+TGG - chr4_4:7873695-7873714 None:intergenic 50.0%
ATGCAAACACAGGTTGCGGA+TGG + chr4_4:7873695-7873714 Msa0667510:CDS 50.0%
ACATGTCTCGCAGCAGATCC+AGG + chr4_4:7870020-7870039 Msa0667510:CDS 55.0%
GGAGAGGATCTAGACGCTGT+AGG + chr4_4:7870340-7870359 Msa0667510:intron 55.0%
GAGGATCTAGACGCTGTAGG+AGG + chr4_4:7870343-7870362 Msa0667510:intron 55.0%
CGGAGAAGGAATCCGTCAAC+AGG + chr4_4:7870714-7870733 Msa0667510:intron 55.0%
ACCAGCACGCGCATGTTTCA+TGG - chr4_4:7872013-7872032 None:intergenic 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG - chr4_4:7872932-7872951 None:intergenic 55.0%
!! GCTCAATAGTGCTGGTCGTG+AGG - chr4_4:7872935-7872954 None:intergenic 55.0%
GGGGGGCAAATGGCTTATAG+AGG + chr4_4:7873612-7873631 Msa0667510:CDS 55.0%
GCCATGAAACATGCGCGTGC+TGG + chr4_4:7872009-7872028 Msa0667510:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 7868635 7873728 7868635 ID=Msa0667510;Name=Msa0667510
chr4_4 mRNA 7868635 7873728 7868635 ID=Msa0667510-mRNA-1;Parent=Msa0667510;Name=Msa0667510-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0|0|0.25|1|1|4|0|269
chr4_4 exon 7868635 7868835 7868635 ID=Msa0667510-mRNA-1:exon:2577;Parent=Msa0667510-mRNA-1
chr4_4 exon 7869989 7870041 7869989 ID=Msa0667510-mRNA-1:exon:2578;Parent=Msa0667510-mRNA-1
chr4_4 exon 7872600 7872781 7872600 ID=Msa0667510-mRNA-1:exon:2579;Parent=Msa0667510-mRNA-1
chr4_4 exon 7873355 7873728 7873355 ID=Msa0667510-mRNA-1:exon:2580;Parent=Msa0667510-mRNA-1
chr4_4 CDS 7868635 7868835 7868635 ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1
chr4_4 CDS 7869989 7870041 7869989 ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1
chr4_4 CDS 7872600 7872781 7872600 ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1
chr4_4 CDS 7873355 7873728 7873355 ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1
Gene Sequence

>Msa0667510

ATGGCTACACATCCAATCAGAAACTTCCCAGCAAATATTCTTATTCTCGATGGGAAGAACTACAATAATTGGAGCAAGCAAATGAAGGTGATGTTCGGAATCCAAGACATTTGGGATTTGGTGCAAAATAGGTTAGCTCCCATTAGTGGTCGTGCGACAAATGAAGAGAGCCGAAGTGCTCTAAAAGGCGATATAACCAAAATTTGGCACAGTGATTCCAATCAAACAAAAGACATGTCTCGCAGCAGATCCAGGCCAAGTTCAGATGCAAGTAGACGTCATAAATCTGGTTCCCGCCAATACGTAAGTCGTAGTCCATCAAGATCACCAAGTTCATCGCGAAGTAGGAGTTTACCTACAATGCAAAGTAAAAGTAAAAACCGACGTCATACAGCACGCATTAGTAGCATGCCCAAGCAAACAAGGGTTATATCAGAACAACAATTTTCGCCACAAGAAGGAATTGACATTGAGTTCAAGTCATTGAGCCTTACAGCAGAAGATGAGCTATCCAACCGACACAGAAACAGAGAGATATATGACGATGTTTCAGCCAATTTGAGAAGCATTAAGAAACGGTTGAAACATCTTTCAGAGAATAATGGGACGTTCTCAATTGATGAGGCCATTGAAATATCTGATGCAGCATTTCTCTTGAAGATTTTGAGAAAACCAAATGCTGAGATTGAGTTAGGGGGGCAAATGGCTTATAGAGGTGCACTTTTGTTGCTTCAAGCAGATTTGTTAAAGAAGAAAGCACATGAAATACTTGTCCAATGCAAACACAGGTTGCGGATGGCAGACCTTTAG

Protein sequence

>Msa0667510

MATHPIRNFPANILILDGKNYNNWSKQMKVMFGIQDIWDLVQNRLAPISGRATNEESRSALKGDITKIWHSDSNQTKDMSRSRSRPSSDASRRHKSGSRQYVSRSPSRSPSSSRSRSLPTMQSKSKNRRHTARISSMPKQTRVISEQQFSPQEGIDIEFKSLSLTAEDELSNRHRNREIYDDVSANLRSIKKRLKHLSENNGTFSIDEAIEISDAAFLLKILRKPNAEIELGGQMAYRGALLLLQADLLKKKAHEILVQCKHRLRMADL*