Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0667510 | XP_004513903.1 | 58.108 | 148 | 58 | 2 | 121 | 267 | 93 | 237 | 1.18e-45 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0667510 | A0A1S2Z2K9 | 58.108 | 148 | 58 | 2 | 121 | 267 | 93 | 237 | 5.64e-46 | 164 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0629690 | Msa0667510 | 0.816440 | 5.525038e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0667510 | MtrunA17_Chr4g0006041 | 47.134 | 157 | 67 | 4 | 125 | 269 | 50 | 202 | 2.47e-33 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 53 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTTAATGCTTCTCAAAT+TGG | 0.206072 | 4_4:-7873472 | None:intergenic |
TTTGGGATTTGGTGCAAAAT+AGG | 0.263926 | 4_4:+7868744 | Msa0667510:CDS |
ATGGGAAGAACTACAATAAT+TGG | 0.273537 | 4_4:+7868684 | Msa0667510:CDS |
GTTGCGGATGGCAGACCTTT+AGG | 0.312919 | 4_4:+7873707 | Msa0667510:CDS |
AATCCAAGACATTTGGGATT+TGG | 0.314222 | 4_4:+7868733 | Msa0667510:CDS |
ATTTGTCGCACGACCACTAA+TGG | 0.316224 | 4_4:-7868774 | None:intergenic |
CCAAATGCTGAGATTGAGTT+AGG | 0.318672 | 4_4:+7873591 | Msa0667510:CDS |
AAACATCTTTCAGAGAATAA+TGG | 0.333812 | 4_4:+7873501 | Msa0667510:CDS |
TGTTCGGAATCCAAGACATT+TGG | 0.350400 | 4_4:+7868726 | Msa0667510:CDS |
AACATCTTTCAGAGAATAAT+GGG | 0.354100 | 4_4:+7873502 | Msa0667510:CDS |
TGATATAACCCTTGTTTGCT+TGG | 0.364098 | 4_4:-7872758 | None:intergenic |
CCTAACTCAATCTCAGCATT+TGG | 0.372392 | 4_4:-7873591 | None:intergenic |
GAGAGCCGAAGTGCTCTAAA+AGG | 0.378364 | 4_4:+7868800 | Msa0667510:CDS |
GTTCGGAATCCAAGACATTT+GGG | 0.382062 | 4_4:+7868727 | Msa0667510:CDS |
CGTCTACTTGCATCTGAACT+TGG | 0.408967 | 4_4:-7872601 | None:intergenic |
CTCTCTGTTTCTGTGTCGGT+TGG | 0.422209 | 4_4:-7873430 | None:intergenic |
GCAAGTAGACGTCATAAATC+TGG | 0.428957 | 4_4:+7872613 | Msa0667510:CDS |
CTCCTACTTCGCGATGAACT+TGG | 0.437490 | 4_4:-7872673 | None:intergenic |
AAGCAAACAAGGGTTATATC+AGG | 0.438093 | 4_4:+7872760 | Msa0667510:CDS |
GCACCAAATCCCAAATGTCT+TGG | 0.440236 | 4_4:-7868736 | None:intergenic |
TTTGTCGCACGACCACTAAT+GGG | 0.440269 | 4_4:-7868773 | None:intergenic |
GATGAACTTGGTGATCTTGA+TGG | 0.447905 | 4_4:-7872661 | None:intergenic |
TCGAGAATAAGAATATTTGC+TGG | 0.452394 | 4_4:-7868662 | None:intergenic |
GATATAACCCTTGTTTGCTT+GGG | 0.465551 | 4_4:-7872757 | None:intergenic |
TTTGCTGGGAAGTTTCTGAT+TGG | 0.465739 | 4_4:-7868647 | None:intergenic |
GCAAATATTCTTATTCTCGA+TGG | 0.476484 | 4_4:+7868665 | Msa0667510:CDS |
ATGGACTACGACTTACGTAT+TGG | 0.477204 | 4_4:-7872642 | None:intergenic |
ATATCTCTCTGTTTCTGTGT+CGG | 0.485989 | 4_4:-7873434 | None:intergenic |
ATAGCTCATCTTCTGCTGTA+AGG | 0.487175 | 4_4:-7873407 | None:intergenic |
ACATGTCTCGCAGCAGATCC+AGG | 0.494438 | 4_4:+7870020 | Msa0667510:CDS |
CAAATGCTGAGATTGAGTTA+GGG | 0.494654 | 4_4:+7873592 | Msa0667510:CDS |
TCCGCAACCTGTGTTTGCAT+TGG | 0.499695 | 4_4:-7873692 | None:intergenic |
AAGCAAATGAAGGTGATGTT+CGG | 0.510231 | 4_4:+7868710 | Msa0667510:CDS |
CAAATATTCTTATTCTCGAT+GGG | 0.510403 | 4_4:+7868666 | Msa0667510:CDS |
TCCAATGCAAACACAGGTTG+CGG | 0.514202 | 4_4:+7873691 | Msa0667510:CDS |
ATTTGAGAAGCATTAAGAAA+CGG | 0.519890 | 4_4:+7873475 | Msa0667510:CDS |
AATAGGTTAGCTCCCATTAG+TGG | 0.529207 | 4_4:+7868761 | Msa0667510:CDS |
TGCTGCATCAGATATTTCAA+TGG | 0.551180 | 4_4:-7873544 | None:intergenic |
CGAGAATAAGAATATTTGCT+GGG | 0.558459 | 4_4:-7868661 | None:intergenic |
GTAGCATGCCCAAGCAAACA+AGG | 0.566760 | 4_4:+7872749 | Msa0667510:CDS |
GACTACGACTTACGTATTGG+CGG | 0.568651 | 4_4:-7872639 | None:intergenic |
TCAATGTCAATTCCTTCTTG+TGG | 0.574145 | 4_4:-7873369 | None:intergenic |
TAATTGGAGCAAGCAAATGA+AGG | 0.591040 | 4_4:+7868700 | Msa0667510:CDS |
AAATGCTGAGATTGAGTTAG+GGG | 0.595664 | 4_4:+7873593 | Msa0667510:CDS |
ACTACGACTTACGTATTGGC+GGG | 0.596278 | 4_4:-7872638 | None:intergenic |
CACCAAGTTCATCGCGAAGT+AGG | 0.601770 | 4_4:+7872671 | Msa0667510:CDS |
ATGCAAACACAGGTTGCGGA+TGG | 0.601836 | 4_4:+7873695 | Msa0667510:CDS |
AATGCTGAGATTGAGTTAGG+GGG | 0.647383 | 4_4:+7873594 | Msa0667510:CDS |
TACTTGTCCAATGCAAACAC+AGG | 0.647609 | 4_4:+7873685 | Msa0667510:CDS |
TGGGACGTTCTCAATTGATG+AGG | 0.654936 | 4_4:+7873521 | Msa0667510:CDS |
ATGCTGAGATTGAGTTAGGG+GGG | 0.660841 | 4_4:+7873595 | Msa0667510:CDS |
TAGCATGCCCAAGCAAACAA+GGG | 0.691614 | 4_4:+7872750 | Msa0667510:CDS |
TAATGCGTGCTGTATGACGT+CGG | 0.710297 | 4_4:-7872726 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATAATAAAAAAAT+GGG | - | chr4_4:7869338-7869357 | None:intergenic | 0.0% |
!! | AAATATATATATATATATAT+TGG | + | chr4_4:7872431-7872450 | Msa0667510:intron | 0.0% |
!! | AATATATATATATATATATT+GGG | + | chr4_4:7872432-7872451 | Msa0667510:intron | 0.0% |
!!! | CAAAAATATCTTTTTTAAAT+TGG | - | chr4_4:7869604-7869623 | None:intergenic | 10.0% |
!! | TAAAATAGATAAAAACAAAA+AGG | - | chr4_4:7871629-7871648 | None:intergenic | 10.0% |
!!! | TATTTTAAAAAAAATGAAGA+TGG | + | chr4_4:7871642-7871661 | Msa0667510:intron | 10.0% |
!!! | ATTTTAAAAAAAATGAAGAT+GGG | + | chr4_4:7871643-7871662 | Msa0667510:intron | 10.0% |
!!! | AACATTTTTTTTGCTATAAA+AGG | + | chr4_4:7868839-7868858 | Msa0667510:intron | 15.0% |
!!! | TGTTTTTTGTATTAACTATT+CGG | + | chr4_4:7868940-7868959 | Msa0667510:intron | 15.0% |
!! | ATTATCCAAAAAAAAGAAAA+CGG | + | chr4_4:7869405-7869424 | Msa0667510:intron | 15.0% |
!! | TAATGTTTAATAACTCAATT+GGG | - | chr4_4:7869558-7869577 | None:intergenic | 15.0% |
!! | ATAAAGAAGAAGAAATATTA+AGG | - | chr4_4:7870150-7870169 | None:intergenic | 15.0% |
!!! | TATATATTGATTGATGATTT+CGG | + | chr4_4:7870225-7870244 | Msa0667510:intron | 15.0% |
!! | AAATGTAAAAAAATAGATAG+CGG | + | chr4_4:7871072-7871091 | Msa0667510:intron | 15.0% |
!! | TATTAGATCAAATACTATAA+AGG | + | chr4_4:7871142-7871161 | Msa0667510:intron | 15.0% |
!!! | AATAAGAAATCTTGTTATTA+AGG | + | chr4_4:7871371-7871390 | Msa0667510:intron | 15.0% |
!!! | CCAAATTTTTGTTTTTTATT+AGG | - | chr4_4:7871804-7871823 | None:intergenic | 15.0% |
!! | CCTAATAAAAAACAAAAATT+TGG | + | chr4_4:7871801-7871820 | Msa0667510:intron | 15.0% |
!! | TGAATATGAGTTTATAAATA+AGG | - | chr4_4:7872882-7872901 | None:intergenic | 15.0% |
!! | AAAAAAAAAAAAACTTTGCA+AGG | + | chr4_4:7873261-7873280 | Msa0667510:intron | 15.0% |
!! | AAAAAAAAAAAACTTTGCAA+GGG | + | chr4_4:7873262-7873281 | Msa0667510:intron | 15.0% |
!! | TTGAACTTGATAAATTTCAT+GGG | - | chr4_4:7868884-7868903 | None:intergenic | 20.0% |
!! | ATTTACCTCTTAATATGAAT+AGG | + | chr4_4:7869484-7869503 | Msa0667510:intron | 20.0% |
!! | GATATTGTATTATATACACA+TGG | - | chr4_4:7869536-7869555 | None:intergenic | 20.0% |
!! | GTAATGTTTAATAACTCAAT+TGG | - | chr4_4:7869559-7869578 | None:intergenic | 20.0% |
!!! | GATATTTTAGTATATCTCAT+TGG | - | chr4_4:7869638-7869657 | None:intergenic | 20.0% |
!! | TTACAATATTAATGCTTAGT+TGG | - | chr4_4:7869730-7869749 | None:intergenic | 20.0% |
!! | ACTATATCTAATATCACTTT+GGG | - | chr4_4:7869948-7869967 | None:intergenic | 20.0% |
!! | AACTATATCTAATATCACTT+TGG | - | chr4_4:7869949-7869968 | None:intergenic | 20.0% |
!! | CATCAATCAATATATAAAGA+TGG | - | chr4_4:7870221-7870240 | None:intergenic | 20.0% |
!!! | ATATATTGATTGATGATTTC+GGG | + | chr4_4:7870226-7870245 | Msa0667510:intron | 20.0% |
!!! | ACTCATATTTTTTTCAACTT+TGG | - | chr4_4:7870374-7870393 | None:intergenic | 20.0% |
!! | AAAGTTGAAAAAAATATGAG+TGG | + | chr4_4:7870373-7870392 | Msa0667510:intron | 20.0% |
!! | TCATTCAACATAACAAAAAT+TGG | + | chr4_4:7870436-7870455 | Msa0667510:intron | 20.0% |
!! | TTCTTAGTAACATTATATAG+CGG | + | chr4_4:7871024-7871043 | Msa0667510:intron | 20.0% |
!!! | CATTTTTTTTTACTTACAGA+AGG | - | chr4_4:7871057-7871076 | None:intergenic | 20.0% |
!!! | GAAAAGCATTATTAATAACA+TGG | + | chr4_4:7871665-7871684 | Msa0667510:intron | 20.0% |
!! | AAACTAAGAAATTGATATCA+TGG | - | chr4_4:7871754-7871773 | None:intergenic | 20.0% |
!!! | TTTTGATACTCTTTACTATA+TGG | - | chr4_4:7872329-7872348 | None:intergenic | 20.0% |
!! | GATATTGTATATTATATGCA+GGG | - | chr4_4:7872480-7872499 | None:intergenic | 20.0% |
!! | AGATATTGTATATTATATGC+AGG | - | chr4_4:7872481-7872500 | None:intergenic | 20.0% |
! | CAAATATTCTTATTCTCGAT+GGG | + | chr4_4:7868666-7868685 | Msa0667510:CDS | 25.0% |
! | AGCAAAAAAAATGTTCACTT+TGG | - | chr4_4:7868834-7868853 | None:intergenic | 25.0% |
!!! | TTTTGCTATAAAAGGTTTGA+TGG | + | chr4_4:7868847-7868866 | Msa0667510:intron | 25.0% |
! | GTTGAACTTGATAAATTTCA+TGG | - | chr4_4:7868885-7868904 | None:intergenic | 25.0% |
!! | AAAAAATCTGATTTCTGGAT+AGG | - | chr4_4:7869034-7869053 | None:intergenic | 25.0% |
! | GTTTGAAAAAATCTGATTTC+TGG | - | chr4_4:7869039-7869058 | None:intergenic | 25.0% |
! | ACAGCTTAATAACATATGAT+TGG | - | chr4_4:7869160-7869179 | None:intergenic | 25.0% |
!! | TGTGTTTACTGTTTTCTTTT+GGG | + | chr4_4:7869267-7869286 | Msa0667510:intron | 25.0% |
!!! | TTTTTTTTGGATAATAGCAC+TGG | - | chr4_4:7869400-7869419 | None:intergenic | 25.0% |
! | ATATGAATAGGTGAAGAATT+CGG | + | chr4_4:7869496-7869515 | Msa0667510:intron | 25.0% |
!! | GCTATATCTTTAAATTTTCG+AGG | - | chr4_4:7869694-7869713 | None:intergenic | 25.0% |
! | CTTAGTTGGTCAAATTTATT+AGG | - | chr4_4:7869716-7869735 | None:intergenic | 25.0% |
! | GTTTAAGGACATATATTTCA+GGG | - | chr4_4:7869894-7869913 | None:intergenic | 25.0% |
! | TGTTTAAGGACATATATTTC+AGG | - | chr4_4:7869895-7869914 | None:intergenic | 25.0% |
! | ATTGCTTATTTGCTTGTTTA+AGG | - | chr4_4:7869909-7869928 | None:intergenic | 25.0% |
!! | ATATCACTTTGGGTTTAATT+CGG | - | chr4_4:7869938-7869957 | None:intergenic | 25.0% |
! | TTCCTTCGAAATTATAGATT+TGG | + | chr4_4:7869972-7869991 | Msa0667510:intron | 25.0% |
!!! | GCACTTTTTTAAAATATGAG+TGG | + | chr4_4:7870051-7870070 | Msa0667510:intron | 25.0% |
! | ACATAATAACATTCAAGGTA+GGG | - | chr4_4:7870180-7870199 | None:intergenic | 25.0% |
! | TACATAATAACATTCAAGGT+AGG | - | chr4_4:7870181-7870200 | None:intergenic | 25.0% |
! | AGTCTACATAATAACATTCA+AGG | - | chr4_4:7870185-7870204 | None:intergenic | 25.0% |
! | TGAATGTTATTATGTAGACT+TGG | + | chr4_4:7870185-7870204 | Msa0667510:intron | 25.0% |
!! | ATCCCTATTTTCAAAGTAAA+TGG | + | chr4_4:7870319-7870338 | Msa0667510:intron | 25.0% |
!! | CTCCATTTACTTTGAAAATA+GGG | - | chr4_4:7870324-7870343 | None:intergenic | 25.0% |
!! | TCTCCATTTACTTTGAAAAT+AGG | - | chr4_4:7870325-7870344 | None:intergenic | 25.0% |
!! | TATTTTCAAAGTAAATGGAG+AGG | + | chr4_4:7870324-7870343 | Msa0667510:intron | 25.0% |
!!! | CATATTTTTTTCAACTTTGG+AGG | - | chr4_4:7870371-7870390 | None:intergenic | 25.0% |
! | CACATGAATTATAGCTATAA+GGG | - | chr4_4:7870517-7870536 | None:intergenic | 25.0% |
! | TAAACTAATATGCTTTGTAG+AGG | + | chr4_4:7870587-7870606 | Msa0667510:intron | 25.0% |
! | CACATATGGCATATTATAAT+TGG | + | chr4_4:7870881-7870900 | Msa0667510:intron | 25.0% |
! | GACACAAACATATATTTAAC+AGG | + | chr4_4:7871326-7871345 | Msa0667510:intron | 25.0% |
!!! | AGAAATCTTGTTATTAAGGA+AGG | + | chr4_4:7871375-7871394 | Msa0667510:intron | 25.0% |
!!! | GAAATCTTGTTATTAAGGAA+GGG | + | chr4_4:7871376-7871395 | Msa0667510:intron | 25.0% |
!!! | TTAAGCATTGTGTTTTTTTG+AGG | + | chr4_4:7871423-7871442 | Msa0667510:intron | 25.0% |
! | TCATCTACATAAATCAAAGT+CGG | + | chr4_4:7871492-7871511 | Msa0667510:intron | 25.0% |
! | AAACAAAAATTTGGTAAGTG+TGG | + | chr4_4:7871810-7871829 | Msa0667510:intron | 25.0% |
!! | TTTTATACATATCCTCTTAG+AGG | + | chr4_4:7871877-7871896 | Msa0667510:intron | 25.0% |
! | AAAGCAAGTATATAATCCAA+TGG | + | chr4_4:7872082-7872101 | Msa0667510:intron | 25.0% |
! | AACGAACAAATTATAACCAT+TGG | - | chr4_4:7872101-7872120 | None:intergenic | 25.0% |
! | TATCAAAATAACTTGAGCAA+AGG | + | chr4_4:7872341-7872360 | Msa0667510:intron | 25.0% |
! | ATCAAAATAACTTGAGCAAA+GGG | + | chr4_4:7872342-7872361 | Msa0667510:intron | 25.0% |
!!! | TTTTTTGTCAAGTAGTTTAG+TGG | + | chr4_4:7872379-7872398 | Msa0667510:intron | 25.0% |
!! | AGTTCACACATTTTTAAATG+TGG | + | chr4_4:7872406-7872425 | Msa0667510:intron | 25.0% |
! | ATATATATATTGGGTATCCA+AGG | + | chr4_4:7872441-7872460 | Msa0667510:intron | 25.0% |
!!! | ATATTTTATCTCACTTTTGC+AGG | + | chr4_4:7872578-7872597 | Msa0667510:intron | 25.0% |
!!! | TTACTTTTACTTTGCATTGT+AGG | - | chr4_4:7872703-7872722 | None:intergenic | 25.0% |
!! | ACACAAATATGTGATTTTGT+TGG | - | chr4_4:7873331-7873350 | None:intergenic | 25.0% |
! | TTTCTTAATGCTTCTCAAAT+TGG | - | chr4_4:7873475-7873494 | None:intergenic | 25.0% |
!!! | ATTTGAGAAGCATTAAGAAA+CGG | + | chr4_4:7873475-7873494 | Msa0667510:CDS | 25.0% |
! | AAACATCTTTCAGAGAATAA+TGG | + | chr4_4:7873501-7873520 | Msa0667510:CDS | 25.0% |
! | AACATCTTTCAGAGAATAAT+GGG | + | chr4_4:7873502-7873521 | Msa0667510:CDS | 25.0% |
CGAGAATAAGAATATTTGCT+GGG | - | chr4_4:7868664-7868683 | None:intergenic | 30.0% | |
TCGAGAATAAGAATATTTGC+TGG | - | chr4_4:7868665-7868684 | None:intergenic | 30.0% | |
GCAAATATTCTTATTCTCGA+TGG | + | chr4_4:7868665-7868684 | Msa0667510:CDS | 30.0% | |
ATGGGAAGAACTACAATAAT+TGG | + | chr4_4:7868684-7868703 | Msa0667510:CDS | 30.0% | |
! | TAATCAACCTTTTCCGATTA+GGG | - | chr4_4:7869245-7869264 | None:intergenic | 30.0% |
! | GTGTGTTTACTGTTTTCTTT+TGG | + | chr4_4:7869266-7869285 | Msa0667510:intron | 30.0% |
AAGAACAGTAATATCATGCA+AGG | - | chr4_4:7869299-7869318 | None:intergenic | 30.0% | |
! | TGGAACCGTTTTCTTTTTTT+TGG | - | chr4_4:7869413-7869432 | None:intergenic | 30.0% |
ACAACACATCTATTGTTTGT+TGG | - | chr4_4:7869433-7869452 | None:intergenic | 30.0% | |
!!! | AGTTTTTTCAAGTAGTCTAG+TGG | + | chr4_4:7869455-7869474 | Msa0667510:intron | 30.0% |
CTTCACCTATTCATATTAAG+AGG | - | chr4_4:7869492-7869511 | None:intergenic | 30.0% | |
TATGAATAGGTGAAGAATTC+GGG | + | chr4_4:7869497-7869516 | Msa0667510:intron | 30.0% | |
TGTTCTAGTCCAAAATGAAA+TGG | + | chr4_4:7869777-7869796 | Msa0667510:intron | 30.0% | |
GTTCTAGTCCAAAATGAAAT+GGG | + | chr4_4:7869778-7869797 | Msa0667510:intron | 30.0% | |
TGCCAAATCTATAATTTCGA+AGG | - | chr4_4:7869977-7869996 | None:intergenic | 30.0% | |
!! | AGACATGTCTTTTGTTTGAT+TGG | - | chr4_4:7870008-7870027 | None:intergenic | 30.0% |
! | AAAAAAGTGCAAAGTATACC+TGG | - | chr4_4:7870041-7870060 | None:intergenic | 30.0% |
GCACATGAATTATAGCTATA+AGG | - | chr4_4:7870518-7870537 | None:intergenic | 30.0% | |
ATAATGTTTAACCCTGTTGA+CGG | - | chr4_4:7870729-7870748 | None:intergenic | 30.0% | |
! | AAAAATGCTATTTGAAGCGA+AGG | + | chr4_4:7870839-7870858 | Msa0667510:intron | 30.0% |
GCTAAATGTTGAATTGTCAT+TGG | + | chr4_4:7870937-7870956 | Msa0667510:intron | 30.0% | |
TTGATTTATGTAGATGAAGC+AGG | - | chr4_4:7871489-7871508 | None:intergenic | 30.0% | |
TGGATGTTATGGTTGTTATA+AGG | - | chr4_4:7871579-7871598 | None:intergenic | 30.0% | |
AAACAAAAAGGTTCCCTATT+TGG | - | chr4_4:7871617-7871636 | None:intergenic | 30.0% | |
! | AATTTGGTAAGTGTGGTTTT+TGG | + | chr4_4:7871817-7871836 | Msa0667510:intron | 30.0% |
ATGAGAATGAGTTACAAAAC+AGG | - | chr4_4:7871848-7871867 | None:intergenic | 30.0% | |
GGTACACAATTTAAACATAG+AGG | + | chr4_4:7872180-7872199 | Msa0667510:intron | 30.0% | |
GTCTAAATAGTGTTCAAATG+TGG | + | chr4_4:7872237-7872256 | Msa0667510:intron | 30.0% | |
AAACTCTCTTTGCTCAATAA+TGG | - | chr4_4:7872293-7872312 | None:intergenic | 30.0% | |
! | TGCTATATTTTGTCTGATGT+CGG | + | chr4_4:7872902-7872921 | Msa0667510:intron | 30.0% |
TGGTTCATAGACATAAATTG+TGG | + | chr4_4:7872956-7872975 | Msa0667510:intron | 30.0% | |
GGTTCATAGACATAAATTGT+GGG | + | chr4_4:7872957-7872976 | Msa0667510:intron | 30.0% | |
TGATACCATCTTAAAAATCG+TGG | + | chr4_4:7873035-7873054 | Msa0667510:intron | 30.0% | |
TAATTGGAGCAAGCAAATGA+AGG | + | chr4_4:7868700-7868719 | Msa0667510:CDS | 35.0% | |
AAGCAAATGAAGGTGATGTT+CGG | + | chr4_4:7868710-7868729 | Msa0667510:CDS | 35.0% | |
! | AATCCAAGACATTTGGGATT+TGG | + | chr4_4:7868733-7868752 | Msa0667510:CDS | 35.0% |
!! | TTTGGGATTTGGTGCAAAAT+AGG | + | chr4_4:7868744-7868763 | Msa0667510:CDS | 35.0% |
ATCAAGTTCAACACCATGAT+TGG | + | chr4_4:7868893-7868912 | Msa0667510:intron | 35.0% | |
CTATTCGGTTCATAGTAGAA+CGG | + | chr4_4:7868955-7868974 | Msa0667510:intron | 35.0% | |
TATTCGGTTCATAGTAGAAC+GGG | + | chr4_4:7868956-7868975 | Msa0667510:intron | 35.0% | |
!! | TGATTGGTCTTGAGAACTAT+TGG | - | chr4_4:7869144-7869163 | None:intergenic | 35.0% |
! | CTAATCAACCTTTTCCGATT+AGG | - | chr4_4:7869246-7869265 | None:intergenic | 35.0% |
! | CTAATCGGAAAAGGTTGATT+AGG | + | chr4_4:7869244-7869263 | Msa0667510:intron | 35.0% |
ATGAATAGGTGAAGAATTCG+GGG | + | chr4_4:7869498-7869517 | Msa0667510:intron | 35.0% | |
TCTTAAGACGAAACAAGAGT+AGG | + | chr4_4:7869656-7869675 | Msa0667510:intron | 35.0% | |
CAGGGTTTATATTAACGAAG+AGG | - | chr4_4:7869876-7869895 | None:intergenic | 35.0% | |
TTGCATAGTTGAATGACATG+TGG | - | chr4_4:7870289-7870308 | None:intergenic | 35.0% | |
ACATGTCATTCAACTATGCA+AGG | + | chr4_4:7870288-7870307 | Msa0667510:intron | 35.0% | |
GTTATGTTGAATGAGAGAGA+GGG | - | chr4_4:7870430-7870449 | None:intergenic | 35.0% | |
TGTTATGTTGAATGAGAGAG+AGG | - | chr4_4:7870431-7870450 | None:intergenic | 35.0% | |
!! | AGTCTATATCCTTTTGGGAA+TGG | - | chr4_4:7870474-7870493 | None:intergenic | 35.0% |
! | GAGGAAGTCTATATCCTTTT+GGG | - | chr4_4:7870479-7870498 | None:intergenic | 35.0% |
! | AGAGGAAGTCTATATCCTTT+TGG | - | chr4_4:7870480-7870499 | None:intergenic | 35.0% |
ACCAATAGGCAAAGAAACAA+CGG | + | chr4_4:7870694-7870713 | Msa0667510:intron | 35.0% | |
! | CAAGCGAATTGATTCACATA+TGG | + | chr4_4:7870867-7870886 | Msa0667510:intron | 35.0% |
TCAACATTTAGCAGCAAACA+TGG | - | chr4_4:7870929-7870948 | None:intergenic | 35.0% | |
AAGAGACGCATAAGATGTAT+AGG | + | chr4_4:7871258-7871277 | Msa0667510:intron | 35.0% | |
CAATGCTTAATGTAACAGCT+TGG | - | chr4_4:7871413-7871432 | None:intergenic | 35.0% | |
! | TTTGGTTTAAGGCAGAAGTT+TGG | - | chr4_4:7871599-7871618 | None:intergenic | 35.0% |
ACTTCTGCCTTAAACCAAAT+AGG | + | chr4_4:7871600-7871619 | Msa0667510:intron | 35.0% | |
CTTCTGCCTTAAACCAAATA+GGG | + | chr4_4:7871601-7871620 | Msa0667510:intron | 35.0% | |
! | AAGGTTCCCTATTTGGTTTA+AGG | - | chr4_4:7871610-7871629 | None:intergenic | 35.0% |
!! | ATCCTCTTAGAGGTCTTATT+TGG | + | chr4_4:7871887-7871906 | Msa0667510:intron | 35.0% |
!! | TCCTCTTAGAGGTCTTATTT+GGG | + | chr4_4:7871888-7871907 | Msa0667510:intron | 35.0% |
! | TCCTTTAACCATGTCTTGTT+TGG | + | chr4_4:7872158-7872177 | Msa0667510:intron | 35.0% |
!! | CCTTTAACCATGTCTTGTTT+GGG | + | chr4_4:7872159-7872178 | Msa0667510:intron | 35.0% |
CTCAATAATGGTGATAGAAG+GGG | - | chr4_4:7872281-7872300 | None:intergenic | 35.0% | |
GCTCAATAATGGTGATAGAA+GGG | - | chr4_4:7872282-7872301 | None:intergenic | 35.0% | |
TGCTCAATAATGGTGATAGA+AGG | - | chr4_4:7872283-7872302 | None:intergenic | 35.0% | |
TTGTCAAGTAGTTTAGTGGT+CGG | + | chr4_4:7872383-7872402 | Msa0667510:intron | 35.0% | |
CTCTGTGAGTTTAATTCAGT+TGG | - | chr4_4:7872507-7872526 | None:intergenic | 35.0% | |
! | GATATAACCCTTGTTTGCTT+GGG | - | chr4_4:7872760-7872779 | None:intergenic | 35.0% |
! | TGATATAACCCTTGTTTGCT+TGG | - | chr4_4:7872761-7872780 | None:intergenic | 35.0% |
AAGCAAACAAGGGTTATATC+AGG | + | chr4_4:7872760-7872779 | Msa0667510:CDS | 35.0% | |
AATCCATATACCTCACAAAC+CGG | - | chr4_4:7872857-7872876 | None:intergenic | 35.0% | |
TCATAGACATAAATTGTGGG+TGG | + | chr4_4:7872960-7872979 | Msa0667510:intron | 35.0% | |
!! | CTCAACCACGATTTTTAAGA+TGG | - | chr4_4:7873043-7873062 | None:intergenic | 35.0% |
CACCACAAAATCAGTTTGTA+AGG | + | chr4_4:7873073-7873092 | Msa0667510:intron | 35.0% | |
!! | CACCTTACAAACTGATTTTG+TGG | - | chr4_4:7873078-7873097 | None:intergenic | 35.0% |
TCAATGTCAATTCCTTCTTG+TGG | - | chr4_4:7873372-7873391 | None:intergenic | 35.0% | |
!! | ATATCTCTCTGTTTCTGTGT+CGG | - | chr4_4:7873437-7873456 | None:intergenic | 35.0% |
TGCTGCATCAGATATTTCAA+TGG | - | chr4_4:7873547-7873566 | None:intergenic | 35.0% | |
CAAATGCTGAGATTGAGTTA+GGG | + | chr4_4:7873592-7873611 | Msa0667510:CDS | 35.0% | |
AAATGCTGAGATTGAGTTAG+GGG | + | chr4_4:7873593-7873612 | Msa0667510:CDS | 35.0% | |
TTTGCTGGGAAGTTTCTGAT+TGG | - | chr4_4:7868650-7868669 | None:intergenic | 40.0% | |
TGTTCGGAATCCAAGACATT+TGG | + | chr4_4:7868726-7868745 | Msa0667510:CDS | 40.0% | |
GTTCGGAATCCAAGACATTT+GGG | + | chr4_4:7868727-7868746 | Msa0667510:CDS | 40.0% | |
! | AATAGGTTAGCTCCCATTAG+TGG | + | chr4_4:7868761-7868780 | Msa0667510:CDS | 40.0% |
!!! | TATCGCCTTTTAGAGCACTT+CGG | - | chr4_4:7868808-7868827 | None:intergenic | 40.0% |
!! | TCAACACCATGATTGGTTTG+CGG | + | chr4_4:7868900-7868919 | Msa0667510:intron | 40.0% |
ATTCGGTTCATAGTAGAACG+GGG | + | chr4_4:7868957-7868976 | Msa0667510:intron | 40.0% | |
! | GGGTTTGATAATCCAGAGTT+CGG | + | chr4_4:7868977-7868996 | Msa0667510:intron | 40.0% |
! | ACCCTAGTTACCTTTTACAC+TGG | + | chr4_4:7869201-7869220 | Msa0667510:intron | 40.0% |
GCCAGTGTAAAAGGTAACTA+GGG | - | chr4_4:7869205-7869224 | None:intergenic | 40.0% | |
TGCCAGTGTAAAAGGTAACT+AGG | - | chr4_4:7869206-7869225 | None:intergenic | 40.0% | |
! | GTGCACATCCCATTTCATTT+TGG | - | chr4_4:7869789-7869808 | None:intergenic | 40.0% |
! | GAGAGGGTATGTTTCAAAGT+GGG | - | chr4_4:7870414-7870433 | None:intergenic | 40.0% |
! | AGAGAGGGTATGTTTCAAAG+TGG | - | chr4_4:7870415-7870434 | None:intergenic | 40.0% |
TGAGAGAATCCATTCCCAAA+AGG | + | chr4_4:7870462-7870481 | Msa0667510:intron | 40.0% | |
TGATGCATTCTAGTAGACCT+TGG | + | chr4_4:7870660-7870679 | Msa0667510:intron | 40.0% | |
GATGCATTCTAGTAGACCTT+GGG | + | chr4_4:7870661-7870680 | Msa0667510:intron | 40.0% | |
! | ATTGGTCTATCTTCTTCCCA+AGG | - | chr4_4:7870680-7870699 | None:intergenic | 40.0% |
TGGGAAGAAGATAGACCAAT+AGG | + | chr4_4:7870680-7870699 | Msa0667510:intron | 40.0% | |
!! | TCCGTTGTTTCTTTGCCTAT+TGG | - | chr4_4:7870698-7870717 | None:intergenic | 40.0% |
TAGCAGCAAACATGGTGAAT+TGG | - | chr4_4:7870921-7870940 | None:intergenic | 40.0% | |
!!! | GTCAGCACGCATTGTTTTTT+TGG | + | chr4_4:7871463-7871482 | Msa0667510:intron | 40.0% |
AGGCAGAAGTTTGGATGTTA+TGG | - | chr4_4:7871590-7871609 | None:intergenic | 40.0% | |
!! | CCTCTTAGAGGTCTTATTTG+GGG | + | chr4_4:7871889-7871908 | Msa0667510:intron | 40.0% |
TAGTGCGAACAAATACAGTG+CGG | + | chr4_4:7871982-7872001 | Msa0667510:intron | 40.0% | |
CCCAAACAAGACATGGTTAA+AGG | - | chr4_4:7872162-7872181 | None:intergenic | 40.0% | |
TTGTGTACCCAAACAAGACA+TGG | - | chr4_4:7872169-7872188 | None:intergenic | 40.0% | |
AGAAGGGGAGAATATTGTGT+TGG | - | chr4_4:7872266-7872285 | None:intergenic | 40.0% | |
GCAAGTAGACGTCATAAATC+TGG | + | chr4_4:7872613-7872632 | Msa0667510:CDS | 40.0% | |
! | ATGGACTACGACTTACGTAT+TGG | - | chr4_4:7872645-7872664 | None:intergenic | 40.0% |
! | GATGAACTTGGTGATCTTGA+TGG | - | chr4_4:7872664-7872683 | None:intergenic | 40.0% |
! | TGCAGTTTTCCAAGAAATCG+TGG | + | chr4_4:7872828-7872847 | Msa0667510:intron | 40.0% |
TTCCAAGAAATCGTGGTTAC+CGG | + | chr4_4:7872835-7872854 | Msa0667510:intron | 40.0% | |
!! | TTACCGGTTTGTGAGGTATA+TGG | + | chr4_4:7872851-7872870 | Msa0667510:intron | 40.0% |
TCTGATAGCAGATGACCTAA+TGG | + | chr4_4:7872997-7873016 | Msa0667510:intron | 40.0% | |
! | GCAGATGACCTAATGGATAT+TGG | + | chr4_4:7873004-7873023 | Msa0667510:intron | 40.0% |
! | TGACCTAATGGATATTGGAG+AGG | + | chr4_4:7873009-7873028 | Msa0667510:intron | 40.0% |
ACTTTGCAAGGGACTAAAAC+TGG | + | chr4_4:7873273-7873292 | Msa0667510:intron | 40.0% | |
! | CAACAATTTTCGCCACAAGA+AGG | + | chr4_4:7873357-7873376 | Msa0667510:CDS | 40.0% |
ATAGCTCATCTTCTGCTGTA+AGG | - | chr4_4:7873410-7873429 | None:intergenic | 40.0% | |
CCTAACTCAATCTCAGCATT+TGG | - | chr4_4:7873594-7873613 | None:intergenic | 40.0% | |
CCAAATGCTGAGATTGAGTT+AGG | + | chr4_4:7873591-7873610 | Msa0667510:CDS | 40.0% | |
AATGCTGAGATTGAGTTAGG+GGG | + | chr4_4:7873594-7873613 | Msa0667510:CDS | 40.0% | |
TACTTGTCCAATGCAAACAC+AGG | + | chr4_4:7873685-7873704 | Msa0667510:CDS | 40.0% | |
GCACCAAATCCCAAATGTCT+TGG | - | chr4_4:7868739-7868758 | None:intergenic | 45.0% | |
TTTGTCGCACGACCACTAAT+GGG | - | chr4_4:7868776-7868795 | None:intergenic | 45.0% | |
ATTTGTCGCACGACCACTAA+TGG | - | chr4_4:7868777-7868796 | None:intergenic | 45.0% | |
TGATGACCGCAAACCAATCA+TGG | - | chr4_4:7868909-7868928 | None:intergenic | 45.0% | |
TAATCCAGAGTTCGGCTGTA+TGG | + | chr4_4:7868985-7869004 | Msa0667510:intron | 45.0% | |
ACAGCTCATGCCAGTGTAAA+AGG | - | chr4_4:7869214-7869233 | None:intergenic | 45.0% | |
AGAGTGACCCTAATCGGAAA+AGG | + | chr4_4:7869235-7869254 | Msa0667510:intron | 45.0% | |
GTTGAATGACATGTGGAGAG+AGG | - | chr4_4:7870282-7870301 | None:intergenic | 45.0% | |
GCTATAAGGGACATCACAAG+AGG | - | chr4_4:7870504-7870523 | None:intergenic | 45.0% | |
TGTAGAGGATCTGAAAGCGA+TGG | + | chr4_4:7870602-7870621 | Msa0667510:intron | 45.0% | |
TCTGAAAGCGATGGAGAAAG+TGG | + | chr4_4:7870611-7870630 | Msa0667510:intron | 45.0% | |
AGAATGCATCAACTCCTCCA+CGG | - | chr4_4:7870651-7870670 | None:intergenic | 45.0% | |
AGGCAAAGAAACAACGGAGA+AGG | + | chr4_4:7870700-7870719 | Msa0667510:intron | 45.0% | |
CAGCAAACATGGTGAATTGG+CGG | - | chr4_4:7870918-7870937 | None:intergenic | 45.0% | |
CCCCAAATAAGACCTCTAAG+AGG | - | chr4_4:7871892-7871911 | None:intergenic | 45.0% | |
AGGGATCAGTGTTCAAACCT+TGG | - | chr4_4:7872461-7872480 | None:intergenic | 45.0% | |
CGTCTACTTGCATCTGAACT+TGG | - | chr4_4:7872604-7872623 | None:intergenic | 45.0% | |
! | ACTACGACTTACGTATTGGC+GGG | - | chr4_4:7872641-7872660 | None:intergenic | 45.0% |
GACTACGACTTACGTATTGG+CGG | - | chr4_4:7872642-7872661 | None:intergenic | 45.0% | |
TAATGCGTGCTGTATGACGT+CGG | - | chr4_4:7872729-7872748 | None:intergenic | 45.0% | |
TAGCATGCCCAAGCAAACAA+GGG | + | chr4_4:7872750-7872769 | Msa0667510:CDS | 45.0% | |
AACCGGTAACCACGATTTCT+TGG | - | chr4_4:7872840-7872859 | None:intergenic | 45.0% | |
TGAACCAAGCTCAATAGTGC+TGG | - | chr4_4:7872943-7872962 | None:intergenic | 45.0% | |
GAGCCTCTCCAATATCCATT+AGG | - | chr4_4:7873015-7873034 | None:intergenic | 45.0% | |
TGGGACGTTCTCAATTGATG+AGG | + | chr4_4:7873521-7873540 | Msa0667510:CDS | 45.0% | |
ATGCTGAGATTGAGTTAGGG+GGG | + | chr4_4:7873595-7873614 | Msa0667510:CDS | 45.0% | |
TCCAATGCAAACACAGGTTG+CGG | + | chr4_4:7873691-7873710 | Msa0667510:CDS | 45.0% | |
!!! | GTTTTTTTATAATAAAAAAA+TGG | - | chr4_4:7869339-7869358 | None:intergenic | 5.0% |
!!! | AAAAATATCTTTTTTAAATT+GGG | - | chr4_4:7869603-7869622 | None:intergenic | 5.0% |
! | GAGAGCCGAAGTGCTCTAAA+AGG | + | chr4_4:7868800-7868819 | Msa0667510:CDS | 50.0% |
CTTACCATACAGCCGAACTC+TGG | - | chr4_4:7868992-7869011 | None:intergenic | 50.0% | |
GCTGTGAGAGTGACCCTAAT+CGG | + | chr4_4:7869229-7869248 | Msa0667510:intron | 50.0% | |
AGGGACATCACAAGAGGAAG+AGG | - | chr4_4:7870498-7870517 | None:intergenic | 50.0% | |
! | TGGCTCTTTTAGTACGACCG+TGG | + | chr4_4:7870631-7870650 | Msa0667510:intron | 50.0% |
! | CTCTTTTAGTACGACCGTGG+AGG | + | chr4_4:7870634-7870653 | Msa0667510:intron | 50.0% |
GGAGAAGGAATCCGTCAACA+GGG | + | chr4_4:7870715-7870734 | Msa0667510:intron | 50.0% | |
CACCAAGTTCATCGCGAAGT+AGG | + | chr4_4:7872671-7872690 | Msa0667510:CDS | 50.0% | |
CTCCTACTTCGCGATGAACT+TGG | - | chr4_4:7872676-7872695 | None:intergenic | 50.0% | |
GTAGCATGCCCAAGCAAACA+AGG | + | chr4_4:7872749-7872768 | Msa0667510:CDS | 50.0% | |
!! | ATCGTGGTTACCGGTTTGTG+AGG | + | chr4_4:7872844-7872863 | Msa0667510:intron | 50.0% |
!! | TCAATAGTGCTGGTCGTGAG+GGG | - | chr4_4:7872933-7872952 | None:intergenic | 50.0% |
!! | CTCAATAGTGCTGGTCGTGA+GGG | - | chr4_4:7872934-7872953 | None:intergenic | 50.0% |
ACGACCAGCACTATTGAGCT+TGG | + | chr4_4:7872936-7872955 | Msa0667510:intron | 50.0% | |
!! | CTCTCTGTTTCTGTGTCGGT+TGG | - | chr4_4:7873433-7873452 | None:intergenic | 50.0% |
GATTGAGTTAGGGGGGCAAA+TGG | + | chr4_4:7873602-7873621 | Msa0667510:CDS | 50.0% | |
TCCGCAACCTGTGTTTGCAT+TGG | - | chr4_4:7873695-7873714 | None:intergenic | 50.0% | |
ATGCAAACACAGGTTGCGGA+TGG | + | chr4_4:7873695-7873714 | Msa0667510:CDS | 50.0% | |
ACATGTCTCGCAGCAGATCC+AGG | + | chr4_4:7870020-7870039 | Msa0667510:CDS | 55.0% | |
GGAGAGGATCTAGACGCTGT+AGG | + | chr4_4:7870340-7870359 | Msa0667510:intron | 55.0% | |
GAGGATCTAGACGCTGTAGG+AGG | + | chr4_4:7870343-7870362 | Msa0667510:intron | 55.0% | |
CGGAGAAGGAATCCGTCAAC+AGG | + | chr4_4:7870714-7870733 | Msa0667510:intron | 55.0% | |
ACCAGCACGCGCATGTTTCA+TGG | - | chr4_4:7872013-7872032 | None:intergenic | 55.0% | |
!! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_4:7872932-7872951 | None:intergenic | 55.0% |
!! | GCTCAATAGTGCTGGTCGTG+AGG | - | chr4_4:7872935-7872954 | None:intergenic | 55.0% |
GGGGGGCAAATGGCTTATAG+AGG | + | chr4_4:7873612-7873631 | Msa0667510:CDS | 55.0% | |
GCCATGAAACATGCGCGTGC+TGG | + | chr4_4:7872009-7872028 | Msa0667510:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 7868635 | 7873728 | 7868635 | ID=Msa0667510;Name=Msa0667510 |
chr4_4 | mRNA | 7868635 | 7873728 | 7868635 | ID=Msa0667510-mRNA-1;Parent=Msa0667510;Name=Msa0667510-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0|0|0.25|1|1|4|0|269 |
chr4_4 | exon | 7868635 | 7868835 | 7868635 | ID=Msa0667510-mRNA-1:exon:2577;Parent=Msa0667510-mRNA-1 |
chr4_4 | exon | 7869989 | 7870041 | 7869989 | ID=Msa0667510-mRNA-1:exon:2578;Parent=Msa0667510-mRNA-1 |
chr4_4 | exon | 7872600 | 7872781 | 7872600 | ID=Msa0667510-mRNA-1:exon:2579;Parent=Msa0667510-mRNA-1 |
chr4_4 | exon | 7873355 | 7873728 | 7873355 | ID=Msa0667510-mRNA-1:exon:2580;Parent=Msa0667510-mRNA-1 |
chr4_4 | CDS | 7868635 | 7868835 | 7868635 | ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1 |
chr4_4 | CDS | 7869989 | 7870041 | 7869989 | ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1 |
chr4_4 | CDS | 7872600 | 7872781 | 7872600 | ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1 |
chr4_4 | CDS | 7873355 | 7873728 | 7873355 | ID=Msa0667510-mRNA-1:cds;Parent=Msa0667510-mRNA-1 |
Gene Sequence |
Protein sequence |