Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0629690 | XP_004513903.1 | 58.108 | 148 | 58 | 2 | 108 | 254 | 93 | 237 | 1.69e-45 | 163 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0629690 | A0A1S2Z2K9 | 58.108 | 148 | 58 | 2 | 108 | 254 | 93 | 237 | 8.05e-46 | 163 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0013270 | Msa0629690 | 0.807201 | 5.674605e-50 | -8.615850e-47 |
Msa0063540 | Msa0629690 | 0.808435 | 3.102210e-50 | -8.615850e-47 |
Msa0629160 | Msa0629690 | 0.809937 | 1.478371e-50 | -8.615850e-47 |
Msa0629690 | Msa0667510 | 0.816440 | 5.525038e-52 | -8.615850e-47 |
Msa0629690 | Msa0806930 | 0.801232 | 9.923455e-49 | -8.615850e-47 |
Msa0629690 | Msa0831890 | 0.804666 | 1.936135e-49 | -8.615850e-47 |
Msa0532600 | Msa0629690 | 0.926388 | 5.023572e-91 | -8.615850e-47 |
Msa0565700 | Msa0629690 | 0.803121 | 4.055436e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0629690 | MtrunA17_Chr4g0006041 | 47.468 | 158 | 65 | 5 | 112 | 256 | 50 | 202 | 1.73e-33 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 51 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTTAATGCTTCTCAAAT+TGG | 0.206072 | 4_3:-10612021 | None:intergenic |
TTTGGGATTTGGTGCAAAAT+AGG | 0.263926 | 4_3:+10607286 | Msa0629690:CDS |
ATGGGAAGAACTACAATAAT+TGG | 0.273537 | 4_3:+10607226 | Msa0629690:CDS |
GTTGCGGATGGCAGACCTTT+AGG | 0.312919 | 4_3:+10612256 | Msa0629690:CDS |
AATCCAAGACATTTGGGATT+TGG | 0.314222 | 4_3:+10607275 | Msa0629690:CDS |
ATTTGTCGCACGACCACTAA+TGG | 0.316224 | 4_3:-10607316 | None:intergenic |
CCAAATGCTGAGATTGAGTT+AGG | 0.318672 | 4_3:+10612140 | Msa0629690:CDS |
AAACATCTTTCAGAGAATAA+TGG | 0.333812 | 4_3:+10612050 | Msa0629690:CDS |
TGTTCGGAATCCAAGACATT+TGG | 0.350400 | 4_3:+10607268 | Msa0629690:CDS |
AACATCTTTCAGAGAATAAT+GGG | 0.354100 | 4_3:+10612051 | Msa0629690:CDS |
TGATATAACCCTTGTTTGCT+TGG | 0.364098 | 4_3:-10611308 | None:intergenic |
CCTAACTCAATCTCAGCATT+TGG | 0.372392 | 4_3:-10612140 | None:intergenic |
GAGAGCCGAAGTGCTCTAAA+AGG | 0.378364 | 4_3:+10607342 | Msa0629690:CDS |
GTTCGGAATCCAAGACATTT+GGG | 0.382062 | 4_3:+10607269 | Msa0629690:CDS |
CTCTCTGTTTCTGTGTCGGT+TGG | 0.422209 | 4_3:-10611979 | None:intergenic |
GCAAGTAGACGTCATAAATC+TGG | 0.428957 | 4_3:+10611163 | Msa0629690:CDS |
CTCCTACTTCGCGATGAACT+TGG | 0.437490 | 4_3:-10611223 | None:intergenic |
AAGCAAACAAGGGTTATATC+AGG | 0.438093 | 4_3:+10611310 | Msa0629690:CDS |
GCACCAAATCCCAAATGTCT+TGG | 0.440236 | 4_3:-10607278 | None:intergenic |
TTTGTCGCACGACCACTAAT+GGG | 0.440269 | 4_3:-10607315 | None:intergenic |
GATGAACTTGGTGATCTTGA+TGG | 0.447905 | 4_3:-10611211 | None:intergenic |
TCGAGAATAAGAATATTTGC+TGG | 0.452394 | 4_3:-10607204 | None:intergenic |
GATATAACCCTTGTTTGCTT+GGG | 0.465551 | 4_3:-10611307 | None:intergenic |
TTTGCTGGGAAGTTTCTGAT+TGG | 0.465739 | 4_3:-10607189 | None:intergenic |
GCAAATATTCTTATTCTCGA+TGG | 0.476484 | 4_3:+10607207 | Msa0629690:CDS |
ATGGACTACGACTTACGTAT+TGG | 0.477204 | 4_3:-10611192 | None:intergenic |
ATATCTCTCTGTTTCTGTGT+CGG | 0.485989 | 4_3:-10611983 | None:intergenic |
ATAGCTCATCTTCTGCTGTA+AGG | 0.487175 | 4_3:-10611956 | None:intergenic |
CAAATGCTGAGATTGAGTTA+GGG | 0.494654 | 4_3:+10612141 | Msa0629690:CDS |
TCCGCAACCTGTGTTTGCAT+TGG | 0.499695 | 4_3:-10612241 | None:intergenic |
AAGCAAATGAAGGTGATGTT+CGG | 0.510231 | 4_3:+10607252 | Msa0629690:CDS |
CAAATATTCTTATTCTCGAT+GGG | 0.510403 | 4_3:+10607208 | Msa0629690:CDS |
TCCAATGCAAACACAGGTTG+CGG | 0.514202 | 4_3:+10612240 | Msa0629690:CDS |
ATTTGAGAAGCATTAAGAAA+CGG | 0.519890 | 4_3:+10612024 | Msa0629690:CDS |
AATAGGTTAGCTCCCATTAG+TGG | 0.529207 | 4_3:+10607303 | Msa0629690:CDS |
TGCTGCATCAGATATTTCAA+TGG | 0.551180 | 4_3:-10612093 | None:intergenic |
CGAGAATAAGAATATTTGCT+GGG | 0.558459 | 4_3:-10607203 | None:intergenic |
GTAGCATGCCCAAGCAAACA+AGG | 0.566760 | 4_3:+10611299 | Msa0629690:CDS |
GACTACGACTTACGTATTGG+CGG | 0.568651 | 4_3:-10611189 | None:intergenic |
TCAATGTCAATTCCTTCTTG+TGG | 0.574145 | 4_3:-10611918 | None:intergenic |
TAATTGGAGCAAGCAAATGA+AGG | 0.591040 | 4_3:+10607242 | Msa0629690:CDS |
AAATGCTGAGATTGAGTTAG+GGG | 0.595664 | 4_3:+10612142 | Msa0629690:CDS |
ACTACGACTTACGTATTGGC+GGG | 0.596278 | 4_3:-10611188 | None:intergenic |
CACCAAGTTCATCGCGAAGT+AGG | 0.601770 | 4_3:+10611221 | Msa0629690:CDS |
ATGCAAACACAGGTTGCGGA+TGG | 0.601836 | 4_3:+10612244 | Msa0629690:CDS |
AATGCTGAGATTGAGTTAGG+GGG | 0.647383 | 4_3:+10612143 | Msa0629690:CDS |
TACTTGTCCAATGCAAACAC+AGG | 0.647609 | 4_3:+10612234 | Msa0629690:CDS |
TGGGACGTTCTCAATTGATG+AGG | 0.654936 | 4_3:+10612070 | Msa0629690:CDS |
ATGCTGAGATTGAGTTAGGG+GGG | 0.660841 | 4_3:+10612144 | Msa0629690:CDS |
TAGCATGCCCAAGCAAACAA+GGG | 0.691614 | 4_3:+10611300 | Msa0629690:CDS |
TAATGCGTGCTGTATGACGT+CGG | 0.710297 | 4_3:-10611276 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATAATAAAAAAAT+GGG | - | chr4_3:10607881-10607900 | None:intergenic | 0.0% |
!!! | CAAAAATATCTTTTTTAAAT+TGG | - | chr4_3:10608147-10608166 | None:intergenic | 10.0% |
!! | TAAAATAGATAAAAACAAAA+AGG | - | chr4_3:10610168-10610187 | None:intergenic | 10.0% |
!!! | TATTTTAAAAAAAATGAAGA+TGG | + | chr4_3:10610181-10610200 | Msa0629690:intron | 10.0% |
!!! | ATTTTAAAAAAAATGAAGAT+GGG | + | chr4_3:10610182-10610201 | Msa0629690:intron | 10.0% |
!!! | AACATTTTTTTTGCTATAAA+AGG | + | chr4_3:10607381-10607400 | Msa0629690:CDS | 15.0% |
!!! | TGTTTTTTGTATTAACTATT+CGG | + | chr4_3:10607482-10607501 | Msa0629690:intron | 15.0% |
!! | ATTATCCAAAAAAAAGAAAA+CGG | + | chr4_3:10607948-10607967 | Msa0629690:intron | 15.0% |
!! | TAATGTTTAATAACTCAATT+GGG | - | chr4_3:10608101-10608120 | None:intergenic | 15.0% |
!! | AAAAAGAAGAAGAAATATTA+AGG | - | chr4_3:10608693-10608712 | None:intergenic | 15.0% |
!!! | TATATATTGATTGATGATTT+CGG | + | chr4_3:10608768-10608787 | Msa0629690:intron | 15.0% |
!! | TATTAGATCAAATACTATAA+AGG | + | chr4_3:10609686-10609705 | Msa0629690:intron | 15.0% |
!!! | AATAAGAAATCTTGTTATTA+AGG | + | chr4_3:10609910-10609929 | Msa0629690:intron | 15.0% |
!!! | CCAAATTTTTGTTTTTTATT+AGG | - | chr4_3:10610343-10610362 | None:intergenic | 15.0% |
!! | CCTAATAAAAAACAAAAATT+TGG | + | chr4_3:10610340-10610359 | Msa0629690:intron | 15.0% |
!! | TGAATATGAGTTTATAAATA+AGG | - | chr4_3:10611432-10611451 | None:intergenic | 15.0% |
!! | AAAAAAAAAAAAACTTTGCA+AGG | + | chr4_3:10611810-10611829 | Msa0629690:intron | 15.0% |
!! | AAAAAAAAAAAACTTTGCAA+GGG | + | chr4_3:10611811-10611830 | Msa0629690:intron | 15.0% |
!! | TTGAACTTGATAAATTTCAT+GGG | - | chr4_3:10607426-10607445 | None:intergenic | 20.0% |
!! | ATTTACCTCTTAATATGAAT+AGG | + | chr4_3:10608027-10608046 | Msa0629690:intron | 20.0% |
!! | GATATTGTATTATATACACA+TGG | - | chr4_3:10608079-10608098 | None:intergenic | 20.0% |
!! | GTAATGTTTAATAACTCAAT+TGG | - | chr4_3:10608102-10608121 | None:intergenic | 20.0% |
!!! | GATATTTTAGTATATCTCAT+TGG | - | chr4_3:10608181-10608200 | None:intergenic | 20.0% |
!! | TTACAATATTAATGCTTAGT+TGG | - | chr4_3:10608273-10608292 | None:intergenic | 20.0% |
!! | ACTATATCTAATATCACTTT+GGG | - | chr4_3:10608491-10608510 | None:intergenic | 20.0% |
!! | AACTATATCTAATATCACTT+TGG | - | chr4_3:10608492-10608511 | None:intergenic | 20.0% |
!! | CATCAATCAATATATAAAGA+TGG | - | chr4_3:10608764-10608783 | None:intergenic | 20.0% |
!!! | ATATATTGATTGATGATTTC+GGG | + | chr4_3:10608769-10608788 | Msa0629690:intron | 20.0% |
!!! | ACTCATATTTTTTTCAACTT+TGG | - | chr4_3:10608917-10608936 | None:intergenic | 20.0% |
!! | AAAGTTGAAAAAAATATGAG+TGG | + | chr4_3:10608916-10608935 | Msa0629690:intron | 20.0% |
!! | TCATTCAACATAACAAAAAT+TGG | + | chr4_3:10608979-10608998 | Msa0629690:intron | 20.0% |
!! | TTCTTAGTAACATTATATAG+CGG | + | chr4_3:10609567-10609586 | Msa0629690:intron | 20.0% |
!!! | AGTTTTTTTTTACTTACAGA+AGG | - | chr4_3:10609600-10609619 | None:intergenic | 20.0% |
!! | AACTGTAAAAAAATAGATAG+CGG | + | chr4_3:10609616-10609635 | Msa0629690:intron | 20.0% |
!!! | GAAAAGCATTATTAATAACA+TGG | + | chr4_3:10610204-10610223 | Msa0629690:intron | 20.0% |
!! | AAACTAAGAAATTGATATCA+TGG | - | chr4_3:10610293-10610312 | None:intergenic | 20.0% |
!!! | TTTTGATACTCTTTACTATA+TGG | - | chr4_3:10610895-10610914 | None:intergenic | 20.0% |
!!! | ATTTTTAAATGTGGAGAAAT+GGG | + | chr4_3:10610981-10611000 | Msa0629690:intron | 20.0% |
!! | GATATTGTATATTATATGCA+GGG | - | chr4_3:10611030-10611049 | None:intergenic | 20.0% |
!! | AGATATTGTATATTATATGC+AGG | - | chr4_3:10611031-10611050 | None:intergenic | 20.0% |
! | CAAATATTCTTATTCTCGAT+GGG | + | chr4_3:10607208-10607227 | Msa0629690:CDS | 25.0% |
! | AGCAAAAAAAATGTTCACTT+TGG | - | chr4_3:10607376-10607395 | None:intergenic | 25.0% |
!!! | TTTTGCTATAAAAGGTTTGA+TGG | + | chr4_3:10607389-10607408 | Msa0629690:intron | 25.0% |
! | GTTGAACTTGATAAATTTCA+TGG | - | chr4_3:10607427-10607446 | None:intergenic | 25.0% |
!! | AAAAAATCTGATTTCTGGAT+AGG | - | chr4_3:10607576-10607595 | None:intergenic | 25.0% |
! | GTTTGAAAAAATCTGATTTC+TGG | - | chr4_3:10607581-10607600 | None:intergenic | 25.0% |
! | ACAGCTTAATAACATATGAT+TGG | - | chr4_3:10607703-10607722 | None:intergenic | 25.0% |
!! | TGTGTTTACTGTTTTCTTTT+GGG | + | chr4_3:10607810-10607829 | Msa0629690:intron | 25.0% |
!!! | TTTTTTTTGGATAATAGCAC+TGG | - | chr4_3:10607943-10607962 | None:intergenic | 25.0% |
! | ATATGAATAGGTGAAGAATT+CGG | + | chr4_3:10608039-10608058 | Msa0629690:intron | 25.0% |
!! | GCTATATCTTTAAATTTTCG+AGG | - | chr4_3:10608237-10608256 | None:intergenic | 25.0% |
! | CTTAGTTGGTCAAATTTATT+AGG | - | chr4_3:10608259-10608278 | None:intergenic | 25.0% |
! | GTTTAAGGACATATATTTCA+GGG | - | chr4_3:10608437-10608456 | None:intergenic | 25.0% |
! | TGTTTAAGGACATATATTTC+AGG | - | chr4_3:10608438-10608457 | None:intergenic | 25.0% |
! | ATTGCTTATTTGCTTGTTTA+AGG | - | chr4_3:10608452-10608471 | None:intergenic | 25.0% |
!! | ATATCACTTTGGGTTTAATT+CGG | - | chr4_3:10608481-10608500 | None:intergenic | 25.0% |
! | TTCCTACGAAATTATAGATT+TGG | + | chr4_3:10608515-10608534 | Msa0629690:intron | 25.0% |
!!! | GCACTTTTTTAAAATATGAG+TGG | + | chr4_3:10608594-10608613 | Msa0629690:intron | 25.0% |
! | ACATAATAACATTCAAGGTA+GGG | - | chr4_3:10608723-10608742 | None:intergenic | 25.0% |
! | TACATAATAACATTCAAGGT+AGG | - | chr4_3:10608724-10608743 | None:intergenic | 25.0% |
! | AGTCTACATAATAACATTCA+AGG | - | chr4_3:10608728-10608747 | None:intergenic | 25.0% |
! | TGAATGTTATTATGTAGACT+TGG | + | chr4_3:10608728-10608747 | Msa0629690:intron | 25.0% |
!! | ATCCCTATTTTCAAAGTAAA+TGG | + | chr4_3:10608862-10608881 | Msa0629690:intron | 25.0% |
!! | CTCCATTTACTTTGAAAATA+GGG | - | chr4_3:10608867-10608886 | None:intergenic | 25.0% |
!! | TCTCCATTTACTTTGAAAAT+AGG | - | chr4_3:10608868-10608887 | None:intergenic | 25.0% |
!! | TATTTTCAAAGTAAATGGAG+AGG | + | chr4_3:10608867-10608886 | Msa0629690:intron | 25.0% |
!!! | CATATTTTTTTCAACTTTGG+AGG | - | chr4_3:10608914-10608933 | None:intergenic | 25.0% |
! | CACATGAATTATAGCTATAA+GGG | - | chr4_3:10609060-10609079 | None:intergenic | 25.0% |
! | TAAACTAATATGCTTTGTAG+AGG | + | chr4_3:10609130-10609149 | Msa0629690:intron | 25.0% |
! | CACATATGGCATATTATAAT+TGG | + | chr4_3:10609424-10609443 | Msa0629690:intron | 25.0% |
! | GACACAAACATATATTTAAC+AGG | + | chr4_3:10609870-10609889 | Msa0629690:intron | 25.0% |
!!! | AGAAATCTTGTTATTAAGGA+AGG | + | chr4_3:10609914-10609933 | Msa0629690:intron | 25.0% |
!!! | GAAATCTTGTTATTAAGGAA+GGG | + | chr4_3:10609915-10609934 | Msa0629690:intron | 25.0% |
!!! | TTAAGCATTGTGTTTTTTTG+AGG | + | chr4_3:10609962-10609981 | Msa0629690:intron | 25.0% |
! | TCATCTACATAAATCAAAGT+CGG | + | chr4_3:10610031-10610050 | Msa0629690:intron | 25.0% |
! | AAACAAAAATTTGGTAAGTG+TGG | + | chr4_3:10610349-10610368 | Msa0629690:intron | 25.0% |
!! | TTTTATACATATCCTCTTAG+AGG | + | chr4_3:10610416-10610435 | Msa0629690:intron | 25.0% |
! | AAAGCAAGTATATAATCCAA+TGG | + | chr4_3:10610648-10610667 | Msa0629690:intron | 25.0% |
! | AACGAACAAATTATAACCAT+TGG | - | chr4_3:10610667-10610686 | None:intergenic | 25.0% |
! | TATCAAAATAACTTGAGCAA+AGG | + | chr4_3:10610907-10610926 | Msa0629690:intron | 25.0% |
! | ATCAAAATAACTTGAGCAAA+GGG | + | chr4_3:10610908-10610927 | Msa0629690:intron | 25.0% |
!!! | TTTTTTGTCAAGTAGTTTAG+TGG | + | chr4_3:10610945-10610964 | Msa0629690:intron | 25.0% |
! | ATTTAAAAATGTGTGAACTC+CGG | - | chr4_3:10610971-10610990 | None:intergenic | 25.0% |
!! | AGTTCACACATTTTTAAATG+TGG | + | chr4_3:10610972-10610991 | Msa0629690:intron | 25.0% |
!! | CATTTTTAAATGTGGAGAAA+TGG | + | chr4_3:10610980-10610999 | Msa0629690:intron | 25.0% |
!! | TTTTTAAATGTGGAGAAATG+GGG | + | chr4_3:10610982-10611001 | Msa0629690:intron | 25.0% |
!!! | ATATTTTATCTCACTTTTGC+AGG | + | chr4_3:10611128-10611147 | Msa0629690:intron | 25.0% |
! | TTTCTTAATGCTTCTCAAAT+TGG | - | chr4_3:10612024-10612043 | None:intergenic | 25.0% |
!!! | ATTTGAGAAGCATTAAGAAA+CGG | + | chr4_3:10612024-10612043 | Msa0629690:CDS | 25.0% |
! | AAACATCTTTCAGAGAATAA+TGG | + | chr4_3:10612050-10612069 | Msa0629690:CDS | 25.0% |
! | AACATCTTTCAGAGAATAAT+GGG | + | chr4_3:10612051-10612070 | Msa0629690:CDS | 25.0% |
CGAGAATAAGAATATTTGCT+GGG | - | chr4_3:10607206-10607225 | None:intergenic | 30.0% | |
TCGAGAATAAGAATATTTGC+TGG | - | chr4_3:10607207-10607226 | None:intergenic | 30.0% | |
GCAAATATTCTTATTCTCGA+TGG | + | chr4_3:10607207-10607226 | Msa0629690:CDS | 30.0% | |
ATGGGAAGAACTACAATAAT+TGG | + | chr4_3:10607226-10607245 | Msa0629690:CDS | 30.0% | |
! | TAATCAACCTTTTCCGATTA+GGG | - | chr4_3:10607788-10607807 | None:intergenic | 30.0% |
! | GTGTGTTTACTGTTTTCTTT+TGG | + | chr4_3:10607809-10607828 | Msa0629690:intron | 30.0% |
AAGAACAGTAATATCATGCA+AGG | - | chr4_3:10607842-10607861 | None:intergenic | 30.0% | |
! | TGGAACCGTTTTCTTTTTTT+TGG | - | chr4_3:10607956-10607975 | None:intergenic | 30.0% |
ACAACACATCTATTGTTTGT+TGG | - | chr4_3:10607976-10607995 | None:intergenic | 30.0% | |
!!! | AGTTTTTTCAAGTAGTCTAG+TGG | + | chr4_3:10607998-10608017 | Msa0629690:intron | 30.0% |
CTTCACCTATTCATATTAAG+AGG | - | chr4_3:10608035-10608054 | None:intergenic | 30.0% | |
TATGAATAGGTGAAGAATTC+GGG | + | chr4_3:10608040-10608059 | Msa0629690:intron | 30.0% | |
TGTTCTAGTCCAAAATGAAA+TGG | + | chr4_3:10608320-10608339 | Msa0629690:intron | 30.0% | |
GTTCTAGTCCAAAATGAAAT+GGG | + | chr4_3:10608321-10608340 | Msa0629690:intron | 30.0% | |
TGCCAAATCTATAATTTCGT+AGG | - | chr4_3:10608520-10608539 | None:intergenic | 30.0% | |
!! | AGACATGTCTTTTGTTTGAT+TGG | - | chr4_3:10608551-10608570 | None:intergenic | 30.0% |
! | AAAAAAGTGCAAAGTATACC+TGG | - | chr4_3:10608584-10608603 | None:intergenic | 30.0% |
GCACATGAATTATAGCTATA+AGG | - | chr4_3:10609061-10609080 | None:intergenic | 30.0% | |
ATAATGTTTAACCCTGTTGA+CGG | - | chr4_3:10609272-10609291 | None:intergenic | 30.0% | |
! | AAAAATGCTATTTGAAGCGA+AGG | + | chr4_3:10609382-10609401 | Msa0629690:intron | 30.0% |
GCTAAATGTTGAATTGTCAT+TGG | + | chr4_3:10609480-10609499 | Msa0629690:intron | 30.0% | |
TTGATTTATGTAGATGAAGC+AGG | - | chr4_3:10610028-10610047 | None:intergenic | 30.0% | |
TGGATGTTATGGTTGTTATA+AGG | - | chr4_3:10610118-10610137 | None:intergenic | 30.0% | |
AAACAAAAAGGTTCCCTATT+TGG | - | chr4_3:10610156-10610175 | None:intergenic | 30.0% | |
! | AATTTGGTAAGTGTGGTTTT+TGG | + | chr4_3:10610356-10610375 | Msa0629690:intron | 30.0% |
ATGAGAATGAGTTACAAAAC+AGG | - | chr4_3:10610387-10610406 | None:intergenic | 30.0% | |
GGTACACAATTTAAACATAG+AGG | + | chr4_3:10610746-10610765 | Msa0629690:intron | 30.0% | |
GTCTAAATAGTGTTCAAATG+TGG | + | chr4_3:10610803-10610822 | Msa0629690:intron | 30.0% | |
CTCAATAATGATGATAGAAG+GGG | - | chr4_3:10610847-10610866 | None:intergenic | 30.0% | |
GCTCAATAATGATGATAGAA+GGG | - | chr4_3:10610848-10610867 | None:intergenic | 30.0% | |
TGCTCAATAATGATGATAGA+AGG | - | chr4_3:10610849-10610868 | None:intergenic | 30.0% | |
!! | TTACTTTTACTTTGCATTGC+AGG | - | chr4_3:10611253-10611272 | None:intergenic | 30.0% |
! | TGCTATATTTTGTCTGATGT+CGG | + | chr4_3:10611452-10611471 | Msa0629690:intron | 30.0% |
TGGTTCATAGACATAAATTG+TGG | + | chr4_3:10611506-10611525 | Msa0629690:intron | 30.0% | |
GGTTCATAGACATAAATTGT+GGG | + | chr4_3:10611507-10611526 | Msa0629690:intron | 30.0% | |
TGATACCATCTTAAAAATCG+TGG | + | chr4_3:10611585-10611604 | Msa0629690:intron | 30.0% | |
GTCGTATATCAGACAAAATA+TGG | - | chr4_3:10611684-10611703 | None:intergenic | 30.0% | |
! | ACACAAACATGTGATTTTGT+TGG | - | chr4_3:10611880-10611899 | None:intergenic | 30.0% |
TAATTGGAGCAAGCAAATGA+AGG | + | chr4_3:10607242-10607261 | Msa0629690:CDS | 35.0% | |
AAGCAAATGAAGGTGATGTT+CGG | + | chr4_3:10607252-10607271 | Msa0629690:CDS | 35.0% | |
! | AATCCAAGACATTTGGGATT+TGG | + | chr4_3:10607275-10607294 | Msa0629690:CDS | 35.0% |
!! | TTTGGGATTTGGTGCAAAAT+AGG | + | chr4_3:10607286-10607305 | Msa0629690:CDS | 35.0% |
ATCAAGTTCAACACCATGAT+TGG | + | chr4_3:10607435-10607454 | Msa0629690:intron | 35.0% | |
CTATTCGGTTCATAGTAGAA+CGG | + | chr4_3:10607497-10607516 | Msa0629690:intron | 35.0% | |
TATTCGGTTCATAGTAGAAC+GGG | + | chr4_3:10607498-10607517 | Msa0629690:intron | 35.0% | |
!! | TGATTGGTCTTGAGAACTAT+TGG | - | chr4_3:10607687-10607706 | None:intergenic | 35.0% |
! | CTAATCAACCTTTTCCGATT+AGG | - | chr4_3:10607789-10607808 | None:intergenic | 35.0% |
! | CTAATCGGAAAAGGTTGATT+AGG | + | chr4_3:10607787-10607806 | Msa0629690:intron | 35.0% |
ATGAATAGGTGAAGAATTCG+GGG | + | chr4_3:10608041-10608060 | Msa0629690:intron | 35.0% | |
TCTTAAGACGAAACAAGAGT+AGG | + | chr4_3:10608199-10608218 | Msa0629690:intron | 35.0% | |
CAGGGTTTATATTAACGAAG+AGG | - | chr4_3:10608419-10608438 | None:intergenic | 35.0% | |
TTGCATAGTTGAATGACATG+TGG | - | chr4_3:10608832-10608851 | None:intergenic | 35.0% | |
ACATGTCATTCAACTATGCA+AGG | + | chr4_3:10608831-10608850 | Msa0629690:intron | 35.0% | |
GTTATGTTGAATGAGAGAGA+GGG | - | chr4_3:10608973-10608992 | None:intergenic | 35.0% | |
TGTTATGTTGAATGAGAGAG+AGG | - | chr4_3:10608974-10608993 | None:intergenic | 35.0% | |
!! | AGTCTATATCCTTTTGGGAA+TGG | - | chr4_3:10609017-10609036 | None:intergenic | 35.0% |
! | GAGGAAGTCTATATCCTTTT+GGG | - | chr4_3:10609022-10609041 | None:intergenic | 35.0% |
! | AGAGGAAGTCTATATCCTTT+TGG | - | chr4_3:10609023-10609042 | None:intergenic | 35.0% |
ACCAATAGGCAAAGAAACAA+CGG | + | chr4_3:10609237-10609256 | Msa0629690:intron | 35.0% | |
! | CAAGCGAATTGATTCACATA+TGG | + | chr4_3:10609410-10609429 | Msa0629690:intron | 35.0% |
TCAACATTTAGCAGCAAACA+TGG | - | chr4_3:10609472-10609491 | None:intergenic | 35.0% | |
AAGAGACGCATAAGATGTAT+AGG | + | chr4_3:10609802-10609821 | Msa0629690:intron | 35.0% | |
CAATGCTTAATGTAACAGCT+TGG | - | chr4_3:10609952-10609971 | None:intergenic | 35.0% | |
! | TTTGGTTTAAGGCAGAAGTT+TGG | - | chr4_3:10610138-10610157 | None:intergenic | 35.0% |
ACTTCTGCCTTAAACCAAAT+AGG | + | chr4_3:10610139-10610158 | Msa0629690:intron | 35.0% | |
CTTCTGCCTTAAACCAAATA+GGG | + | chr4_3:10610140-10610159 | Msa0629690:intron | 35.0% | |
! | AAGGTTCCCTATTTGGTTTA+AGG | - | chr4_3:10610149-10610168 | None:intergenic | 35.0% |
!! | ATCCTCTTAGAGGTCTTATT+TGG | + | chr4_3:10610426-10610445 | Msa0629690:intron | 35.0% |
!! | TCCTCTTAGAGGTCTTATTT+GGG | + | chr4_3:10610427-10610446 | Msa0629690:intron | 35.0% |
! | TCCTTTAACCATGTCTTGTT+TGG | + | chr4_3:10610724-10610743 | Msa0629690:intron | 35.0% |
!! | CCTTTAACCATGTCTTGTTT+GGG | + | chr4_3:10610725-10610744 | Msa0629690:intron | 35.0% |
CTCTGTGAGTTTAATTCAGT+TGG | - | chr4_3:10611057-10611076 | None:intergenic | 35.0% | |
! | GATATAACCCTTGTTTGCTT+GGG | - | chr4_3:10611310-10611329 | None:intergenic | 35.0% |
! | TGATATAACCCTTGTTTGCT+TGG | - | chr4_3:10611311-10611330 | None:intergenic | 35.0% |
AAGCAAACAAGGGTTATATC+AGG | + | chr4_3:10611310-10611329 | Msa0629690:CDS | 35.0% | |
AATCCATATACCTCACAAAC+CGG | - | chr4_3:10611407-10611426 | None:intergenic | 35.0% | |
TCATAGACATAAATTGTGGG+TGG | + | chr4_3:10611510-10611529 | Msa0629690:intron | 35.0% | |
!! | CTCAACCACGATTTTTAAGA+TGG | - | chr4_3:10611593-10611612 | None:intergenic | 35.0% |
CACCACAAAATCAGTTTGTA+AGG | + | chr4_3:10611623-10611642 | Msa0629690:intron | 35.0% | |
!! | CACCTTACAAACTGATTTTG+TGG | - | chr4_3:10611628-10611647 | None:intergenic | 35.0% |
TCAATGTCAATTCCTTCTTG+TGG | - | chr4_3:10611921-10611940 | None:intergenic | 35.0% | |
!! | ATATCTCTCTGTTTCTGTGT+CGG | - | chr4_3:10611986-10612005 | None:intergenic | 35.0% |
TGCTGCATCAGATATTTCAA+TGG | - | chr4_3:10612096-10612115 | None:intergenic | 35.0% | |
CAAATGCTGAGATTGAGTTA+GGG | + | chr4_3:10612141-10612160 | Msa0629690:CDS | 35.0% | |
AAATGCTGAGATTGAGTTAG+GGG | + | chr4_3:10612142-10612161 | Msa0629690:CDS | 35.0% | |
TTTGCTGGGAAGTTTCTGAT+TGG | - | chr4_3:10607192-10607211 | None:intergenic | 40.0% | |
TGTTCGGAATCCAAGACATT+TGG | + | chr4_3:10607268-10607287 | Msa0629690:CDS | 40.0% | |
GTTCGGAATCCAAGACATTT+GGG | + | chr4_3:10607269-10607288 | Msa0629690:CDS | 40.0% | |
! | AATAGGTTAGCTCCCATTAG+TGG | + | chr4_3:10607303-10607322 | Msa0629690:CDS | 40.0% |
!!! | TATCGCCTTTTAGAGCACTT+CGG | - | chr4_3:10607350-10607369 | None:intergenic | 40.0% |
!! | TCAACACCATGATTGGTTTG+CGG | + | chr4_3:10607442-10607461 | Msa0629690:intron | 40.0% |
ATTCGGTTCATAGTAGAACG+GGG | + | chr4_3:10607499-10607518 | Msa0629690:intron | 40.0% | |
! | GGGTTTGATAATCCAGAGTT+CGG | + | chr4_3:10607519-10607538 | Msa0629690:intron | 40.0% |
! | ACCCTAGTTACCTTTTACAC+TGG | + | chr4_3:10607744-10607763 | Msa0629690:intron | 40.0% |
GCCAGTGTAAAAGGTAACTA+GGG | - | chr4_3:10607748-10607767 | None:intergenic | 40.0% | |
TGCCAGTGTAAAAGGTAACT+AGG | - | chr4_3:10607749-10607768 | None:intergenic | 40.0% | |
! | GTGCACATCCCATTTCATTT+TGG | - | chr4_3:10608332-10608351 | None:intergenic | 40.0% |
! | GAGAGGGTATGTTTCAAAGT+GGG | - | chr4_3:10608957-10608976 | None:intergenic | 40.0% |
! | AGAGAGGGTATGTTTCAAAG+TGG | - | chr4_3:10608958-10608977 | None:intergenic | 40.0% |
TGAGAGAATCCATTCCCAAA+AGG | + | chr4_3:10609005-10609024 | Msa0629690:intron | 40.0% | |
TGATGCATTCTAGTAGACCT+TGG | + | chr4_3:10609203-10609222 | Msa0629690:intron | 40.0% | |
GATGCATTCTAGTAGACCTT+GGG | + | chr4_3:10609204-10609223 | Msa0629690:intron | 40.0% | |
! | ATTGGTCTATCTTCTTCCCA+AGG | - | chr4_3:10609223-10609242 | None:intergenic | 40.0% |
TGGGAAGAAGATAGACCAAT+AGG | + | chr4_3:10609223-10609242 | Msa0629690:intron | 40.0% | |
!! | TCCGTTGTTTCTTTGCCTAT+TGG | - | chr4_3:10609241-10609260 | None:intergenic | 40.0% |
TAGCAGCAAACATGGTGAAT+TGG | - | chr4_3:10609464-10609483 | None:intergenic | 40.0% | |
!!! | GTCAGCACGCATTGTTTTTT+TGG | + | chr4_3:10610002-10610021 | Msa0629690:intron | 40.0% |
AGGCAGAAGTTTGGATGTTA+TGG | - | chr4_3:10610129-10610148 | None:intergenic | 40.0% | |
!! | CCTCTTAGAGGTCTTATTTG+GGG | + | chr4_3:10610428-10610447 | Msa0629690:intron | 40.0% |
TAGTGCGAACAAATACAGTG+CGG | + | chr4_3:10610548-10610567 | Msa0629690:intron | 40.0% | |
CCCAAACAAGACATGGTTAA+AGG | - | chr4_3:10610728-10610747 | None:intergenic | 40.0% | |
TTGTGTACCCAAACAAGACA+TGG | - | chr4_3:10610735-10610754 | None:intergenic | 40.0% | |
AGAAGGGGAGAATATTGTGT+TGG | - | chr4_3:10610832-10610851 | None:intergenic | 40.0% | |
TTGTCAAGTAGTTTAGTGGC+CGG | + | chr4_3:10610949-10610968 | Msa0629690:intron | 40.0% | |
GCAAGTAGACGTCATAAATC+TGG | + | chr4_3:10611163-10611182 | Msa0629690:CDS | 40.0% | |
! | ATGGACTACGACTTACGTAT+TGG | - | chr4_3:10611195-10611214 | None:intergenic | 40.0% |
! | GATGAACTTGGTGATCTTGA+TGG | - | chr4_3:10611214-10611233 | None:intergenic | 40.0% |
! | TGCAGTTTTCCAAGAAATCG+TGG | + | chr4_3:10611378-10611397 | Msa0629690:intron | 40.0% |
TTCCAAGAAATCGTGGTTAC+CGG | + | chr4_3:10611385-10611404 | Msa0629690:intron | 40.0% | |
!! | TTACCGGTTTGTGAGGTATA+TGG | + | chr4_3:10611401-10611420 | Msa0629690:intron | 40.0% |
TCTGATAGCAGATGACCTAA+TGG | + | chr4_3:10611547-10611566 | Msa0629690:intron | 40.0% | |
! | GCAGATGACCTAATGGATAT+TGG | + | chr4_3:10611554-10611573 | Msa0629690:intron | 40.0% |
! | TGACCTAATGGATATTGGAG+AGG | + | chr4_3:10611559-10611578 | Msa0629690:intron | 40.0% |
ACTTTGCAAGGGACTAAAAC+TGG | + | chr4_3:10611822-10611841 | Msa0629690:intron | 40.0% | |
! | CAACAATTTTCGCCACAAGA+AGG | + | chr4_3:10611906-10611925 | Msa0629690:CDS | 40.0% |
ATAGCTCATCTTCTGCTGTA+AGG | - | chr4_3:10611959-10611978 | None:intergenic | 40.0% | |
CCTAACTCAATCTCAGCATT+TGG | - | chr4_3:10612143-10612162 | None:intergenic | 40.0% | |
CCAAATGCTGAGATTGAGTT+AGG | + | chr4_3:10612140-10612159 | Msa0629690:CDS | 40.0% | |
AATGCTGAGATTGAGTTAGG+GGG | + | chr4_3:10612143-10612162 | Msa0629690:CDS | 40.0% | |
TACTTGTCCAATGCAAACAC+AGG | + | chr4_3:10612234-10612253 | Msa0629690:CDS | 40.0% | |
GCACCAAATCCCAAATGTCT+TGG | - | chr4_3:10607281-10607300 | None:intergenic | 45.0% | |
TTTGTCGCACGACCACTAAT+GGG | - | chr4_3:10607318-10607337 | None:intergenic | 45.0% | |
ATTTGTCGCACGACCACTAA+TGG | - | chr4_3:10607319-10607338 | None:intergenic | 45.0% | |
TGATGACCGCAAACCAATCA+TGG | - | chr4_3:10607451-10607470 | None:intergenic | 45.0% | |
TAATCCAGAGTTCGGCTGTA+TGG | + | chr4_3:10607527-10607546 | Msa0629690:intron | 45.0% | |
ACAGCTCATGCCAGTGTAAA+AGG | - | chr4_3:10607757-10607776 | None:intergenic | 45.0% | |
AGAGTGACCCTAATCGGAAA+AGG | + | chr4_3:10607778-10607797 | Msa0629690:intron | 45.0% | |
GTTGAATGACATGTGGAGAG+AGG | - | chr4_3:10608825-10608844 | None:intergenic | 45.0% | |
GCTATAAGGGACATCACAAG+AGG | - | chr4_3:10609047-10609066 | None:intergenic | 45.0% | |
TGTAGAGGATCTGAAAGCGA+TGG | + | chr4_3:10609145-10609164 | Msa0629690:intron | 45.0% | |
TCTGAAAGCGATGGAGAAAG+TGG | + | chr4_3:10609154-10609173 | Msa0629690:intron | 45.0% | |
AGAATGCATCAACTCCTCCA+CGG | - | chr4_3:10609194-10609213 | None:intergenic | 45.0% | |
AGGCAAAGAAACAACGGAGA+AGG | + | chr4_3:10609243-10609262 | Msa0629690:intron | 45.0% | |
CAGCAAACATGGTGAATTGG+CGG | - | chr4_3:10609461-10609480 | None:intergenic | 45.0% | |
CCCCAAATAAGACCTCTAAG+AGG | - | chr4_3:10610431-10610450 | None:intergenic | 45.0% | |
AGGGATCAGTGTTCAAACCT+TGG | - | chr4_3:10611011-10611030 | None:intergenic | 45.0% | |
CGTCTACTTGCATCTGAACT+TGG | - | chr4_3:10611154-10611173 | None:intergenic | 45.0% | |
! | ACTACGACTTACGTATTGGC+GGG | - | chr4_3:10611191-10611210 | None:intergenic | 45.0% |
GACTACGACTTACGTATTGG+CGG | - | chr4_3:10611192-10611211 | None:intergenic | 45.0% | |
TAATGCGTGCTGTATGACGT+CGG | - | chr4_3:10611279-10611298 | None:intergenic | 45.0% | |
TAGCATGCCCAAGCAAACAA+GGG | + | chr4_3:10611300-10611319 | Msa0629690:CDS | 45.0% | |
AACCGGTAACCACGATTTCT+TGG | - | chr4_3:10611390-10611409 | None:intergenic | 45.0% | |
TGAACCAAGCTCAATAGTGC+TGG | - | chr4_3:10611493-10611512 | None:intergenic | 45.0% | |
GAGCCTCTCCAATATCCATT+AGG | - | chr4_3:10611565-10611584 | None:intergenic | 45.0% | |
TGGGACGTTCTCAATTGATG+AGG | + | chr4_3:10612070-10612089 | Msa0629690:CDS | 45.0% | |
ATGCTGAGATTGAGTTAGGG+GGG | + | chr4_3:10612144-10612163 | Msa0629690:CDS | 45.0% | |
TCCAATGCAAACACAGGTTG+CGG | + | chr4_3:10612240-10612259 | Msa0629690:CDS | 45.0% | |
!!! | GTTTTTTTATAATAAAAAAA+TGG | - | chr4_3:10607882-10607901 | None:intergenic | 5.0% |
!!! | AAAAATATCTTTTTTAAATT+GGG | - | chr4_3:10608146-10608165 | None:intergenic | 5.0% |
! | GAGAGCCGAAGTGCTCTAAA+AGG | + | chr4_3:10607342-10607361 | Msa0629690:CDS | 50.0% |
CTTACCATACAGCCGAACTC+TGG | - | chr4_3:10607534-10607553 | None:intergenic | 50.0% | |
GCTGTGAGAGTGACCCTAAT+CGG | + | chr4_3:10607772-10607791 | Msa0629690:intron | 50.0% | |
AGGGACATCACAAGAGGAAG+AGG | - | chr4_3:10609041-10609060 | None:intergenic | 50.0% | |
! | TGGCTCTTTTAGTACGACCG+TGG | + | chr4_3:10609174-10609193 | Msa0629690:intron | 50.0% |
! | CTCTTTTAGTACGACCGTGG+AGG | + | chr4_3:10609177-10609196 | Msa0629690:intron | 50.0% |
GGAGAAGGAATCCGTCAACA+GGG | + | chr4_3:10609258-10609277 | Msa0629690:intron | 50.0% | |
! | GTGGAGAAATGGGGTATCCA+AGG | + | chr4_3:10610991-10611010 | Msa0629690:intron | 50.0% |
CACCAAGTTCATCGCGAAGT+AGG | + | chr4_3:10611221-10611240 | Msa0629690:CDS | 50.0% | |
CTCCTACTTCGCGATGAACT+TGG | - | chr4_3:10611226-10611245 | None:intergenic | 50.0% | |
GTAGCATGCCCAAGCAAACA+AGG | + | chr4_3:10611299-10611318 | Msa0629690:CDS | 50.0% | |
!! | ATCGTGGTTACCGGTTTGTG+AGG | + | chr4_3:10611394-10611413 | Msa0629690:intron | 50.0% |
!! | TCAATAGTGCTGGTCGTGAG+GGG | - | chr4_3:10611483-10611502 | None:intergenic | 50.0% |
!! | CTCAATAGTGCTGGTCGTGA+GGG | - | chr4_3:10611484-10611503 | None:intergenic | 50.0% |
ACGACCAGCACTATTGAGCT+TGG | + | chr4_3:10611486-10611505 | Msa0629690:intron | 50.0% | |
!! | CTCTCTGTTTCTGTGTCGGT+TGG | - | chr4_3:10611982-10612001 | None:intergenic | 50.0% |
GATTGAGTTAGGGGGGCAAA+TGG | + | chr4_3:10612151-10612170 | Msa0629690:CDS | 50.0% | |
TCCGCAACCTGTGTTTGCAT+TGG | - | chr4_3:10612244-10612263 | None:intergenic | 50.0% | |
ATGCAAACACAGGTTGCGGA+TGG | + | chr4_3:10612244-10612263 | Msa0629690:CDS | 50.0% | |
ACATGTCTCGCAGCAGATCC+AGG | + | chr4_3:10608563-10608582 | Msa0629690:intron | 55.0% | |
GGAGAGGATCTAGACGCTGT+AGG | + | chr4_3:10608883-10608902 | Msa0629690:intron | 55.0% | |
CGGAGAAGGAATCCGTCAAC+AGG | + | chr4_3:10609257-10609276 | Msa0629690:intron | 55.0% | |
ACCAGCACGCGCATGTTTCA+TGG | - | chr4_3:10610579-10610598 | None:intergenic | 55.0% | |
!! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_3:10611482-10611501 | None:intergenic | 55.0% |
!! | GCTCAATAGTGCTGGTCGTG+AGG | - | chr4_3:10611485-10611504 | None:intergenic | 55.0% |
GGGGGGCAAATGGCTTATAG+AGG | + | chr4_3:10612161-10612180 | Msa0629690:CDS | 55.0% | |
GCCATGAAACATGCGCGTGC+TGG | + | chr4_3:10610575-10610594 | Msa0629690:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 10607177 | 10612277 | 10607177 | ID=Msa0629690;Name=Msa0629690 |
chr4_3 | mRNA | 10607177 | 10612277 | 10607177 | ID=Msa0629690-mRNA-1;Parent=Msa0629690;Name=Msa0629690-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.66|1|1|3|0|256 |
chr4_3 | exon | 10607177 | 10607402 | 10607177 | ID=Msa0629690-mRNA-1:exon:3279;Parent=Msa0629690-mRNA-1 |
chr4_3 | exon | 10611161 | 10611331 | 10611161 | ID=Msa0629690-mRNA-1:exon:3280;Parent=Msa0629690-mRNA-1 |
chr4_3 | exon | 10611904 | 10612277 | 10611904 | ID=Msa0629690-mRNA-1:exon:3281;Parent=Msa0629690-mRNA-1 |
chr4_3 | CDS | 10607177 | 10607402 | 10607177 | ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1 |
chr4_3 | CDS | 10611161 | 10611331 | 10611161 | ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1 |
chr4_3 | CDS | 10611904 | 10612277 | 10611904 | ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1 |
Gene Sequence |
Protein sequence |