AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629690 MtrunA17_Chr4g0006041 47.468 158 65 5 112 256 50 202 1.73e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAATGCTTCTCAAAT+TGG 0.206072 4_3:-10612021 None:intergenic
TTTGGGATTTGGTGCAAAAT+AGG 0.263926 4_3:+10607286 Msa0629690:CDS
ATGGGAAGAACTACAATAAT+TGG 0.273537 4_3:+10607226 Msa0629690:CDS
GTTGCGGATGGCAGACCTTT+AGG 0.312919 4_3:+10612256 Msa0629690:CDS
AATCCAAGACATTTGGGATT+TGG 0.314222 4_3:+10607275 Msa0629690:CDS
ATTTGTCGCACGACCACTAA+TGG 0.316224 4_3:-10607316 None:intergenic
CCAAATGCTGAGATTGAGTT+AGG 0.318672 4_3:+10612140 Msa0629690:CDS
AAACATCTTTCAGAGAATAA+TGG 0.333812 4_3:+10612050 Msa0629690:CDS
TGTTCGGAATCCAAGACATT+TGG 0.350400 4_3:+10607268 Msa0629690:CDS
AACATCTTTCAGAGAATAAT+GGG 0.354100 4_3:+10612051 Msa0629690:CDS
TGATATAACCCTTGTTTGCT+TGG 0.364098 4_3:-10611308 None:intergenic
CCTAACTCAATCTCAGCATT+TGG 0.372392 4_3:-10612140 None:intergenic
GAGAGCCGAAGTGCTCTAAA+AGG 0.378364 4_3:+10607342 Msa0629690:CDS
GTTCGGAATCCAAGACATTT+GGG 0.382062 4_3:+10607269 Msa0629690:CDS
CTCTCTGTTTCTGTGTCGGT+TGG 0.422209 4_3:-10611979 None:intergenic
GCAAGTAGACGTCATAAATC+TGG 0.428957 4_3:+10611163 Msa0629690:CDS
CTCCTACTTCGCGATGAACT+TGG 0.437490 4_3:-10611223 None:intergenic
AAGCAAACAAGGGTTATATC+AGG 0.438093 4_3:+10611310 Msa0629690:CDS
GCACCAAATCCCAAATGTCT+TGG 0.440236 4_3:-10607278 None:intergenic
TTTGTCGCACGACCACTAAT+GGG 0.440269 4_3:-10607315 None:intergenic
GATGAACTTGGTGATCTTGA+TGG 0.447905 4_3:-10611211 None:intergenic
TCGAGAATAAGAATATTTGC+TGG 0.452394 4_3:-10607204 None:intergenic
GATATAACCCTTGTTTGCTT+GGG 0.465551 4_3:-10611307 None:intergenic
TTTGCTGGGAAGTTTCTGAT+TGG 0.465739 4_3:-10607189 None:intergenic
GCAAATATTCTTATTCTCGA+TGG 0.476484 4_3:+10607207 Msa0629690:CDS
ATGGACTACGACTTACGTAT+TGG 0.477204 4_3:-10611192 None:intergenic
ATATCTCTCTGTTTCTGTGT+CGG 0.485989 4_3:-10611983 None:intergenic
ATAGCTCATCTTCTGCTGTA+AGG 0.487175 4_3:-10611956 None:intergenic
CAAATGCTGAGATTGAGTTA+GGG 0.494654 4_3:+10612141 Msa0629690:CDS
TCCGCAACCTGTGTTTGCAT+TGG 0.499695 4_3:-10612241 None:intergenic
AAGCAAATGAAGGTGATGTT+CGG 0.510231 4_3:+10607252 Msa0629690:CDS
CAAATATTCTTATTCTCGAT+GGG 0.510403 4_3:+10607208 Msa0629690:CDS
TCCAATGCAAACACAGGTTG+CGG 0.514202 4_3:+10612240 Msa0629690:CDS
ATTTGAGAAGCATTAAGAAA+CGG 0.519890 4_3:+10612024 Msa0629690:CDS
AATAGGTTAGCTCCCATTAG+TGG 0.529207 4_3:+10607303 Msa0629690:CDS
TGCTGCATCAGATATTTCAA+TGG 0.551180 4_3:-10612093 None:intergenic
CGAGAATAAGAATATTTGCT+GGG 0.558459 4_3:-10607203 None:intergenic
GTAGCATGCCCAAGCAAACA+AGG 0.566760 4_3:+10611299 Msa0629690:CDS
GACTACGACTTACGTATTGG+CGG 0.568651 4_3:-10611189 None:intergenic
TCAATGTCAATTCCTTCTTG+TGG 0.574145 4_3:-10611918 None:intergenic
TAATTGGAGCAAGCAAATGA+AGG 0.591040 4_3:+10607242 Msa0629690:CDS
AAATGCTGAGATTGAGTTAG+GGG 0.595664 4_3:+10612142 Msa0629690:CDS
ACTACGACTTACGTATTGGC+GGG 0.596278 4_3:-10611188 None:intergenic
CACCAAGTTCATCGCGAAGT+AGG 0.601770 4_3:+10611221 Msa0629690:CDS
ATGCAAACACAGGTTGCGGA+TGG 0.601836 4_3:+10612244 Msa0629690:CDS
AATGCTGAGATTGAGTTAGG+GGG 0.647383 4_3:+10612143 Msa0629690:CDS
TACTTGTCCAATGCAAACAC+AGG 0.647609 4_3:+10612234 Msa0629690:CDS
TGGGACGTTCTCAATTGATG+AGG 0.654936 4_3:+10612070 Msa0629690:CDS
ATGCTGAGATTGAGTTAGGG+GGG 0.660841 4_3:+10612144 Msa0629690:CDS
TAGCATGCCCAAGCAAACAA+GGG 0.691614 4_3:+10611300 Msa0629690:CDS
TAATGCGTGCTGTATGACGT+CGG 0.710297 4_3:-10611276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAATAAAAAAAT+GGG - chr4_3:10607881-10607900 None:intergenic 0.0%
!!! CAAAAATATCTTTTTTAAAT+TGG - chr4_3:10608147-10608166 None:intergenic 10.0%
!! TAAAATAGATAAAAACAAAA+AGG - chr4_3:10610168-10610187 None:intergenic 10.0%
!!! TATTTTAAAAAAAATGAAGA+TGG + chr4_3:10610181-10610200 Msa0629690:intron 10.0%
!!! ATTTTAAAAAAAATGAAGAT+GGG + chr4_3:10610182-10610201 Msa0629690:intron 10.0%
!!! AACATTTTTTTTGCTATAAA+AGG + chr4_3:10607381-10607400 Msa0629690:CDS 15.0%
!!! TGTTTTTTGTATTAACTATT+CGG + chr4_3:10607482-10607501 Msa0629690:intron 15.0%
!! ATTATCCAAAAAAAAGAAAA+CGG + chr4_3:10607948-10607967 Msa0629690:intron 15.0%
!! TAATGTTTAATAACTCAATT+GGG - chr4_3:10608101-10608120 None:intergenic 15.0%
!! AAAAAGAAGAAGAAATATTA+AGG - chr4_3:10608693-10608712 None:intergenic 15.0%
!!! TATATATTGATTGATGATTT+CGG + chr4_3:10608768-10608787 Msa0629690:intron 15.0%
!! TATTAGATCAAATACTATAA+AGG + chr4_3:10609686-10609705 Msa0629690:intron 15.0%
!!! AATAAGAAATCTTGTTATTA+AGG + chr4_3:10609910-10609929 Msa0629690:intron 15.0%
!!! CCAAATTTTTGTTTTTTATT+AGG - chr4_3:10610343-10610362 None:intergenic 15.0%
!! CCTAATAAAAAACAAAAATT+TGG + chr4_3:10610340-10610359 Msa0629690:intron 15.0%
!! TGAATATGAGTTTATAAATA+AGG - chr4_3:10611432-10611451 None:intergenic 15.0%
!! AAAAAAAAAAAAACTTTGCA+AGG + chr4_3:10611810-10611829 Msa0629690:intron 15.0%
!! AAAAAAAAAAAACTTTGCAA+GGG + chr4_3:10611811-10611830 Msa0629690:intron 15.0%
!! TTGAACTTGATAAATTTCAT+GGG - chr4_3:10607426-10607445 None:intergenic 20.0%
!! ATTTACCTCTTAATATGAAT+AGG + chr4_3:10608027-10608046 Msa0629690:intron 20.0%
!! GATATTGTATTATATACACA+TGG - chr4_3:10608079-10608098 None:intergenic 20.0%
!! GTAATGTTTAATAACTCAAT+TGG - chr4_3:10608102-10608121 None:intergenic 20.0%
!!! GATATTTTAGTATATCTCAT+TGG - chr4_3:10608181-10608200 None:intergenic 20.0%
!! TTACAATATTAATGCTTAGT+TGG - chr4_3:10608273-10608292 None:intergenic 20.0%
!! ACTATATCTAATATCACTTT+GGG - chr4_3:10608491-10608510 None:intergenic 20.0%
!! AACTATATCTAATATCACTT+TGG - chr4_3:10608492-10608511 None:intergenic 20.0%
!! CATCAATCAATATATAAAGA+TGG - chr4_3:10608764-10608783 None:intergenic 20.0%
!!! ATATATTGATTGATGATTTC+GGG + chr4_3:10608769-10608788 Msa0629690:intron 20.0%
!!! ACTCATATTTTTTTCAACTT+TGG - chr4_3:10608917-10608936 None:intergenic 20.0%
!! AAAGTTGAAAAAAATATGAG+TGG + chr4_3:10608916-10608935 Msa0629690:intron 20.0%
!! TCATTCAACATAACAAAAAT+TGG + chr4_3:10608979-10608998 Msa0629690:intron 20.0%
!! TTCTTAGTAACATTATATAG+CGG + chr4_3:10609567-10609586 Msa0629690:intron 20.0%
!!! AGTTTTTTTTTACTTACAGA+AGG - chr4_3:10609600-10609619 None:intergenic 20.0%
!! AACTGTAAAAAAATAGATAG+CGG + chr4_3:10609616-10609635 Msa0629690:intron 20.0%
!!! GAAAAGCATTATTAATAACA+TGG + chr4_3:10610204-10610223 Msa0629690:intron 20.0%
!! AAACTAAGAAATTGATATCA+TGG - chr4_3:10610293-10610312 None:intergenic 20.0%
!!! TTTTGATACTCTTTACTATA+TGG - chr4_3:10610895-10610914 None:intergenic 20.0%
!!! ATTTTTAAATGTGGAGAAAT+GGG + chr4_3:10610981-10611000 Msa0629690:intron 20.0%
!! GATATTGTATATTATATGCA+GGG - chr4_3:10611030-10611049 None:intergenic 20.0%
!! AGATATTGTATATTATATGC+AGG - chr4_3:10611031-10611050 None:intergenic 20.0%
! CAAATATTCTTATTCTCGAT+GGG + chr4_3:10607208-10607227 Msa0629690:CDS 25.0%
! AGCAAAAAAAATGTTCACTT+TGG - chr4_3:10607376-10607395 None:intergenic 25.0%
!!! TTTTGCTATAAAAGGTTTGA+TGG + chr4_3:10607389-10607408 Msa0629690:intron 25.0%
! GTTGAACTTGATAAATTTCA+TGG - chr4_3:10607427-10607446 None:intergenic 25.0%
!! AAAAAATCTGATTTCTGGAT+AGG - chr4_3:10607576-10607595 None:intergenic 25.0%
! GTTTGAAAAAATCTGATTTC+TGG - chr4_3:10607581-10607600 None:intergenic 25.0%
! ACAGCTTAATAACATATGAT+TGG - chr4_3:10607703-10607722 None:intergenic 25.0%
!! TGTGTTTACTGTTTTCTTTT+GGG + chr4_3:10607810-10607829 Msa0629690:intron 25.0%
!!! TTTTTTTTGGATAATAGCAC+TGG - chr4_3:10607943-10607962 None:intergenic 25.0%
! ATATGAATAGGTGAAGAATT+CGG + chr4_3:10608039-10608058 Msa0629690:intron 25.0%
!! GCTATATCTTTAAATTTTCG+AGG - chr4_3:10608237-10608256 None:intergenic 25.0%
! CTTAGTTGGTCAAATTTATT+AGG - chr4_3:10608259-10608278 None:intergenic 25.0%
! GTTTAAGGACATATATTTCA+GGG - chr4_3:10608437-10608456 None:intergenic 25.0%
! TGTTTAAGGACATATATTTC+AGG - chr4_3:10608438-10608457 None:intergenic 25.0%
! ATTGCTTATTTGCTTGTTTA+AGG - chr4_3:10608452-10608471 None:intergenic 25.0%
!! ATATCACTTTGGGTTTAATT+CGG - chr4_3:10608481-10608500 None:intergenic 25.0%
! TTCCTACGAAATTATAGATT+TGG + chr4_3:10608515-10608534 Msa0629690:intron 25.0%
!!! GCACTTTTTTAAAATATGAG+TGG + chr4_3:10608594-10608613 Msa0629690:intron 25.0%
! ACATAATAACATTCAAGGTA+GGG - chr4_3:10608723-10608742 None:intergenic 25.0%
! TACATAATAACATTCAAGGT+AGG - chr4_3:10608724-10608743 None:intergenic 25.0%
! AGTCTACATAATAACATTCA+AGG - chr4_3:10608728-10608747 None:intergenic 25.0%
! TGAATGTTATTATGTAGACT+TGG + chr4_3:10608728-10608747 Msa0629690:intron 25.0%
!! ATCCCTATTTTCAAAGTAAA+TGG + chr4_3:10608862-10608881 Msa0629690:intron 25.0%
!! CTCCATTTACTTTGAAAATA+GGG - chr4_3:10608867-10608886 None:intergenic 25.0%
!! TCTCCATTTACTTTGAAAAT+AGG - chr4_3:10608868-10608887 None:intergenic 25.0%
!! TATTTTCAAAGTAAATGGAG+AGG + chr4_3:10608867-10608886 Msa0629690:intron 25.0%
!!! CATATTTTTTTCAACTTTGG+AGG - chr4_3:10608914-10608933 None:intergenic 25.0%
! CACATGAATTATAGCTATAA+GGG - chr4_3:10609060-10609079 None:intergenic 25.0%
! TAAACTAATATGCTTTGTAG+AGG + chr4_3:10609130-10609149 Msa0629690:intron 25.0%
! CACATATGGCATATTATAAT+TGG + chr4_3:10609424-10609443 Msa0629690:intron 25.0%
! GACACAAACATATATTTAAC+AGG + chr4_3:10609870-10609889 Msa0629690:intron 25.0%
!!! AGAAATCTTGTTATTAAGGA+AGG + chr4_3:10609914-10609933 Msa0629690:intron 25.0%
!!! GAAATCTTGTTATTAAGGAA+GGG + chr4_3:10609915-10609934 Msa0629690:intron 25.0%
!!! TTAAGCATTGTGTTTTTTTG+AGG + chr4_3:10609962-10609981 Msa0629690:intron 25.0%
! TCATCTACATAAATCAAAGT+CGG + chr4_3:10610031-10610050 Msa0629690:intron 25.0%
! AAACAAAAATTTGGTAAGTG+TGG + chr4_3:10610349-10610368 Msa0629690:intron 25.0%
!! TTTTATACATATCCTCTTAG+AGG + chr4_3:10610416-10610435 Msa0629690:intron 25.0%
! AAAGCAAGTATATAATCCAA+TGG + chr4_3:10610648-10610667 Msa0629690:intron 25.0%
! AACGAACAAATTATAACCAT+TGG - chr4_3:10610667-10610686 None:intergenic 25.0%
! TATCAAAATAACTTGAGCAA+AGG + chr4_3:10610907-10610926 Msa0629690:intron 25.0%
! ATCAAAATAACTTGAGCAAA+GGG + chr4_3:10610908-10610927 Msa0629690:intron 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG + chr4_3:10610945-10610964 Msa0629690:intron 25.0%
! ATTTAAAAATGTGTGAACTC+CGG - chr4_3:10610971-10610990 None:intergenic 25.0%
!! AGTTCACACATTTTTAAATG+TGG + chr4_3:10610972-10610991 Msa0629690:intron 25.0%
!! CATTTTTAAATGTGGAGAAA+TGG + chr4_3:10610980-10610999 Msa0629690:intron 25.0%
!! TTTTTAAATGTGGAGAAATG+GGG + chr4_3:10610982-10611001 Msa0629690:intron 25.0%
!!! ATATTTTATCTCACTTTTGC+AGG + chr4_3:10611128-10611147 Msa0629690:intron 25.0%
! TTTCTTAATGCTTCTCAAAT+TGG - chr4_3:10612024-10612043 None:intergenic 25.0%
!!! ATTTGAGAAGCATTAAGAAA+CGG + chr4_3:10612024-10612043 Msa0629690:CDS 25.0%
! AAACATCTTTCAGAGAATAA+TGG + chr4_3:10612050-10612069 Msa0629690:CDS 25.0%
! AACATCTTTCAGAGAATAAT+GGG + chr4_3:10612051-10612070 Msa0629690:CDS 25.0%
CGAGAATAAGAATATTTGCT+GGG - chr4_3:10607206-10607225 None:intergenic 30.0%
TCGAGAATAAGAATATTTGC+TGG - chr4_3:10607207-10607226 None:intergenic 30.0%
GCAAATATTCTTATTCTCGA+TGG + chr4_3:10607207-10607226 Msa0629690:CDS 30.0%
ATGGGAAGAACTACAATAAT+TGG + chr4_3:10607226-10607245 Msa0629690:CDS 30.0%
! TAATCAACCTTTTCCGATTA+GGG - chr4_3:10607788-10607807 None:intergenic 30.0%
! GTGTGTTTACTGTTTTCTTT+TGG + chr4_3:10607809-10607828 Msa0629690:intron 30.0%
AAGAACAGTAATATCATGCA+AGG - chr4_3:10607842-10607861 None:intergenic 30.0%
! TGGAACCGTTTTCTTTTTTT+TGG - chr4_3:10607956-10607975 None:intergenic 30.0%
ACAACACATCTATTGTTTGT+TGG - chr4_3:10607976-10607995 None:intergenic 30.0%
!!! AGTTTTTTCAAGTAGTCTAG+TGG + chr4_3:10607998-10608017 Msa0629690:intron 30.0%
CTTCACCTATTCATATTAAG+AGG - chr4_3:10608035-10608054 None:intergenic 30.0%
TATGAATAGGTGAAGAATTC+GGG + chr4_3:10608040-10608059 Msa0629690:intron 30.0%
TGTTCTAGTCCAAAATGAAA+TGG + chr4_3:10608320-10608339 Msa0629690:intron 30.0%
GTTCTAGTCCAAAATGAAAT+GGG + chr4_3:10608321-10608340 Msa0629690:intron 30.0%
TGCCAAATCTATAATTTCGT+AGG - chr4_3:10608520-10608539 None:intergenic 30.0%
!! AGACATGTCTTTTGTTTGAT+TGG - chr4_3:10608551-10608570 None:intergenic 30.0%
! AAAAAAGTGCAAAGTATACC+TGG - chr4_3:10608584-10608603 None:intergenic 30.0%
GCACATGAATTATAGCTATA+AGG - chr4_3:10609061-10609080 None:intergenic 30.0%
ATAATGTTTAACCCTGTTGA+CGG - chr4_3:10609272-10609291 None:intergenic 30.0%
! AAAAATGCTATTTGAAGCGA+AGG + chr4_3:10609382-10609401 Msa0629690:intron 30.0%
GCTAAATGTTGAATTGTCAT+TGG + chr4_3:10609480-10609499 Msa0629690:intron 30.0%
TTGATTTATGTAGATGAAGC+AGG - chr4_3:10610028-10610047 None:intergenic 30.0%
TGGATGTTATGGTTGTTATA+AGG - chr4_3:10610118-10610137 None:intergenic 30.0%
AAACAAAAAGGTTCCCTATT+TGG - chr4_3:10610156-10610175 None:intergenic 30.0%
! AATTTGGTAAGTGTGGTTTT+TGG + chr4_3:10610356-10610375 Msa0629690:intron 30.0%
ATGAGAATGAGTTACAAAAC+AGG - chr4_3:10610387-10610406 None:intergenic 30.0%
GGTACACAATTTAAACATAG+AGG + chr4_3:10610746-10610765 Msa0629690:intron 30.0%
GTCTAAATAGTGTTCAAATG+TGG + chr4_3:10610803-10610822 Msa0629690:intron 30.0%
CTCAATAATGATGATAGAAG+GGG - chr4_3:10610847-10610866 None:intergenic 30.0%
GCTCAATAATGATGATAGAA+GGG - chr4_3:10610848-10610867 None:intergenic 30.0%
TGCTCAATAATGATGATAGA+AGG - chr4_3:10610849-10610868 None:intergenic 30.0%
!! TTACTTTTACTTTGCATTGC+AGG - chr4_3:10611253-10611272 None:intergenic 30.0%
! TGCTATATTTTGTCTGATGT+CGG + chr4_3:10611452-10611471 Msa0629690:intron 30.0%
TGGTTCATAGACATAAATTG+TGG + chr4_3:10611506-10611525 Msa0629690:intron 30.0%
GGTTCATAGACATAAATTGT+GGG + chr4_3:10611507-10611526 Msa0629690:intron 30.0%
TGATACCATCTTAAAAATCG+TGG + chr4_3:10611585-10611604 Msa0629690:intron 30.0%
GTCGTATATCAGACAAAATA+TGG - chr4_3:10611684-10611703 None:intergenic 30.0%
! ACACAAACATGTGATTTTGT+TGG - chr4_3:10611880-10611899 None:intergenic 30.0%
TAATTGGAGCAAGCAAATGA+AGG + chr4_3:10607242-10607261 Msa0629690:CDS 35.0%
AAGCAAATGAAGGTGATGTT+CGG + chr4_3:10607252-10607271 Msa0629690:CDS 35.0%
! AATCCAAGACATTTGGGATT+TGG + chr4_3:10607275-10607294 Msa0629690:CDS 35.0%
!! TTTGGGATTTGGTGCAAAAT+AGG + chr4_3:10607286-10607305 Msa0629690:CDS 35.0%
ATCAAGTTCAACACCATGAT+TGG + chr4_3:10607435-10607454 Msa0629690:intron 35.0%
CTATTCGGTTCATAGTAGAA+CGG + chr4_3:10607497-10607516 Msa0629690:intron 35.0%
TATTCGGTTCATAGTAGAAC+GGG + chr4_3:10607498-10607517 Msa0629690:intron 35.0%
!! TGATTGGTCTTGAGAACTAT+TGG - chr4_3:10607687-10607706 None:intergenic 35.0%
! CTAATCAACCTTTTCCGATT+AGG - chr4_3:10607789-10607808 None:intergenic 35.0%
! CTAATCGGAAAAGGTTGATT+AGG + chr4_3:10607787-10607806 Msa0629690:intron 35.0%
ATGAATAGGTGAAGAATTCG+GGG + chr4_3:10608041-10608060 Msa0629690:intron 35.0%
TCTTAAGACGAAACAAGAGT+AGG + chr4_3:10608199-10608218 Msa0629690:intron 35.0%
CAGGGTTTATATTAACGAAG+AGG - chr4_3:10608419-10608438 None:intergenic 35.0%
TTGCATAGTTGAATGACATG+TGG - chr4_3:10608832-10608851 None:intergenic 35.0%
ACATGTCATTCAACTATGCA+AGG + chr4_3:10608831-10608850 Msa0629690:intron 35.0%
GTTATGTTGAATGAGAGAGA+GGG - chr4_3:10608973-10608992 None:intergenic 35.0%
TGTTATGTTGAATGAGAGAG+AGG - chr4_3:10608974-10608993 None:intergenic 35.0%
!! AGTCTATATCCTTTTGGGAA+TGG - chr4_3:10609017-10609036 None:intergenic 35.0%
! GAGGAAGTCTATATCCTTTT+GGG - chr4_3:10609022-10609041 None:intergenic 35.0%
! AGAGGAAGTCTATATCCTTT+TGG - chr4_3:10609023-10609042 None:intergenic 35.0%
ACCAATAGGCAAAGAAACAA+CGG + chr4_3:10609237-10609256 Msa0629690:intron 35.0%
! CAAGCGAATTGATTCACATA+TGG + chr4_3:10609410-10609429 Msa0629690:intron 35.0%
TCAACATTTAGCAGCAAACA+TGG - chr4_3:10609472-10609491 None:intergenic 35.0%
AAGAGACGCATAAGATGTAT+AGG + chr4_3:10609802-10609821 Msa0629690:intron 35.0%
CAATGCTTAATGTAACAGCT+TGG - chr4_3:10609952-10609971 None:intergenic 35.0%
! TTTGGTTTAAGGCAGAAGTT+TGG - chr4_3:10610138-10610157 None:intergenic 35.0%
ACTTCTGCCTTAAACCAAAT+AGG + chr4_3:10610139-10610158 Msa0629690:intron 35.0%
CTTCTGCCTTAAACCAAATA+GGG + chr4_3:10610140-10610159 Msa0629690:intron 35.0%
! AAGGTTCCCTATTTGGTTTA+AGG - chr4_3:10610149-10610168 None:intergenic 35.0%
!! ATCCTCTTAGAGGTCTTATT+TGG + chr4_3:10610426-10610445 Msa0629690:intron 35.0%
!! TCCTCTTAGAGGTCTTATTT+GGG + chr4_3:10610427-10610446 Msa0629690:intron 35.0%
! TCCTTTAACCATGTCTTGTT+TGG + chr4_3:10610724-10610743 Msa0629690:intron 35.0%
!! CCTTTAACCATGTCTTGTTT+GGG + chr4_3:10610725-10610744 Msa0629690:intron 35.0%
CTCTGTGAGTTTAATTCAGT+TGG - chr4_3:10611057-10611076 None:intergenic 35.0%
! GATATAACCCTTGTTTGCTT+GGG - chr4_3:10611310-10611329 None:intergenic 35.0%
! TGATATAACCCTTGTTTGCT+TGG - chr4_3:10611311-10611330 None:intergenic 35.0%
AAGCAAACAAGGGTTATATC+AGG + chr4_3:10611310-10611329 Msa0629690:CDS 35.0%
AATCCATATACCTCACAAAC+CGG - chr4_3:10611407-10611426 None:intergenic 35.0%
TCATAGACATAAATTGTGGG+TGG + chr4_3:10611510-10611529 Msa0629690:intron 35.0%
!! CTCAACCACGATTTTTAAGA+TGG - chr4_3:10611593-10611612 None:intergenic 35.0%
CACCACAAAATCAGTTTGTA+AGG + chr4_3:10611623-10611642 Msa0629690:intron 35.0%
!! CACCTTACAAACTGATTTTG+TGG - chr4_3:10611628-10611647 None:intergenic 35.0%
TCAATGTCAATTCCTTCTTG+TGG - chr4_3:10611921-10611940 None:intergenic 35.0%
!! ATATCTCTCTGTTTCTGTGT+CGG - chr4_3:10611986-10612005 None:intergenic 35.0%
TGCTGCATCAGATATTTCAA+TGG - chr4_3:10612096-10612115 None:intergenic 35.0%
CAAATGCTGAGATTGAGTTA+GGG + chr4_3:10612141-10612160 Msa0629690:CDS 35.0%
AAATGCTGAGATTGAGTTAG+GGG + chr4_3:10612142-10612161 Msa0629690:CDS 35.0%
TTTGCTGGGAAGTTTCTGAT+TGG - chr4_3:10607192-10607211 None:intergenic 40.0%
TGTTCGGAATCCAAGACATT+TGG + chr4_3:10607268-10607287 Msa0629690:CDS 40.0%
GTTCGGAATCCAAGACATTT+GGG + chr4_3:10607269-10607288 Msa0629690:CDS 40.0%
! AATAGGTTAGCTCCCATTAG+TGG + chr4_3:10607303-10607322 Msa0629690:CDS 40.0%
!!! TATCGCCTTTTAGAGCACTT+CGG - chr4_3:10607350-10607369 None:intergenic 40.0%
!! TCAACACCATGATTGGTTTG+CGG + chr4_3:10607442-10607461 Msa0629690:intron 40.0%
ATTCGGTTCATAGTAGAACG+GGG + chr4_3:10607499-10607518 Msa0629690:intron 40.0%
! GGGTTTGATAATCCAGAGTT+CGG + chr4_3:10607519-10607538 Msa0629690:intron 40.0%
! ACCCTAGTTACCTTTTACAC+TGG + chr4_3:10607744-10607763 Msa0629690:intron 40.0%
GCCAGTGTAAAAGGTAACTA+GGG - chr4_3:10607748-10607767 None:intergenic 40.0%
TGCCAGTGTAAAAGGTAACT+AGG - chr4_3:10607749-10607768 None:intergenic 40.0%
! GTGCACATCCCATTTCATTT+TGG - chr4_3:10608332-10608351 None:intergenic 40.0%
! GAGAGGGTATGTTTCAAAGT+GGG - chr4_3:10608957-10608976 None:intergenic 40.0%
! AGAGAGGGTATGTTTCAAAG+TGG - chr4_3:10608958-10608977 None:intergenic 40.0%
TGAGAGAATCCATTCCCAAA+AGG + chr4_3:10609005-10609024 Msa0629690:intron 40.0%
TGATGCATTCTAGTAGACCT+TGG + chr4_3:10609203-10609222 Msa0629690:intron 40.0%
GATGCATTCTAGTAGACCTT+GGG + chr4_3:10609204-10609223 Msa0629690:intron 40.0%
! ATTGGTCTATCTTCTTCCCA+AGG - chr4_3:10609223-10609242 None:intergenic 40.0%
TGGGAAGAAGATAGACCAAT+AGG + chr4_3:10609223-10609242 Msa0629690:intron 40.0%
!! TCCGTTGTTTCTTTGCCTAT+TGG - chr4_3:10609241-10609260 None:intergenic 40.0%
TAGCAGCAAACATGGTGAAT+TGG - chr4_3:10609464-10609483 None:intergenic 40.0%
!!! GTCAGCACGCATTGTTTTTT+TGG + chr4_3:10610002-10610021 Msa0629690:intron 40.0%
AGGCAGAAGTTTGGATGTTA+TGG - chr4_3:10610129-10610148 None:intergenic 40.0%
!! CCTCTTAGAGGTCTTATTTG+GGG + chr4_3:10610428-10610447 Msa0629690:intron 40.0%
TAGTGCGAACAAATACAGTG+CGG + chr4_3:10610548-10610567 Msa0629690:intron 40.0%
CCCAAACAAGACATGGTTAA+AGG - chr4_3:10610728-10610747 None:intergenic 40.0%
TTGTGTACCCAAACAAGACA+TGG - chr4_3:10610735-10610754 None:intergenic 40.0%
AGAAGGGGAGAATATTGTGT+TGG - chr4_3:10610832-10610851 None:intergenic 40.0%
TTGTCAAGTAGTTTAGTGGC+CGG + chr4_3:10610949-10610968 Msa0629690:intron 40.0%
GCAAGTAGACGTCATAAATC+TGG + chr4_3:10611163-10611182 Msa0629690:CDS 40.0%
! ATGGACTACGACTTACGTAT+TGG - chr4_3:10611195-10611214 None:intergenic 40.0%
! GATGAACTTGGTGATCTTGA+TGG - chr4_3:10611214-10611233 None:intergenic 40.0%
! TGCAGTTTTCCAAGAAATCG+TGG + chr4_3:10611378-10611397 Msa0629690:intron 40.0%
TTCCAAGAAATCGTGGTTAC+CGG + chr4_3:10611385-10611404 Msa0629690:intron 40.0%
!! TTACCGGTTTGTGAGGTATA+TGG + chr4_3:10611401-10611420 Msa0629690:intron 40.0%
TCTGATAGCAGATGACCTAA+TGG + chr4_3:10611547-10611566 Msa0629690:intron 40.0%
! GCAGATGACCTAATGGATAT+TGG + chr4_3:10611554-10611573 Msa0629690:intron 40.0%
! TGACCTAATGGATATTGGAG+AGG + chr4_3:10611559-10611578 Msa0629690:intron 40.0%
ACTTTGCAAGGGACTAAAAC+TGG + chr4_3:10611822-10611841 Msa0629690:intron 40.0%
! CAACAATTTTCGCCACAAGA+AGG + chr4_3:10611906-10611925 Msa0629690:CDS 40.0%
ATAGCTCATCTTCTGCTGTA+AGG - chr4_3:10611959-10611978 None:intergenic 40.0%
CCTAACTCAATCTCAGCATT+TGG - chr4_3:10612143-10612162 None:intergenic 40.0%
CCAAATGCTGAGATTGAGTT+AGG + chr4_3:10612140-10612159 Msa0629690:CDS 40.0%
AATGCTGAGATTGAGTTAGG+GGG + chr4_3:10612143-10612162 Msa0629690:CDS 40.0%
TACTTGTCCAATGCAAACAC+AGG + chr4_3:10612234-10612253 Msa0629690:CDS 40.0%
GCACCAAATCCCAAATGTCT+TGG - chr4_3:10607281-10607300 None:intergenic 45.0%
TTTGTCGCACGACCACTAAT+GGG - chr4_3:10607318-10607337 None:intergenic 45.0%
ATTTGTCGCACGACCACTAA+TGG - chr4_3:10607319-10607338 None:intergenic 45.0%
TGATGACCGCAAACCAATCA+TGG - chr4_3:10607451-10607470 None:intergenic 45.0%
TAATCCAGAGTTCGGCTGTA+TGG + chr4_3:10607527-10607546 Msa0629690:intron 45.0%
ACAGCTCATGCCAGTGTAAA+AGG - chr4_3:10607757-10607776 None:intergenic 45.0%
AGAGTGACCCTAATCGGAAA+AGG + chr4_3:10607778-10607797 Msa0629690:intron 45.0%
GTTGAATGACATGTGGAGAG+AGG - chr4_3:10608825-10608844 None:intergenic 45.0%
GCTATAAGGGACATCACAAG+AGG - chr4_3:10609047-10609066 None:intergenic 45.0%
TGTAGAGGATCTGAAAGCGA+TGG + chr4_3:10609145-10609164 Msa0629690:intron 45.0%
TCTGAAAGCGATGGAGAAAG+TGG + chr4_3:10609154-10609173 Msa0629690:intron 45.0%
AGAATGCATCAACTCCTCCA+CGG - chr4_3:10609194-10609213 None:intergenic 45.0%
AGGCAAAGAAACAACGGAGA+AGG + chr4_3:10609243-10609262 Msa0629690:intron 45.0%
CAGCAAACATGGTGAATTGG+CGG - chr4_3:10609461-10609480 None:intergenic 45.0%
CCCCAAATAAGACCTCTAAG+AGG - chr4_3:10610431-10610450 None:intergenic 45.0%
AGGGATCAGTGTTCAAACCT+TGG - chr4_3:10611011-10611030 None:intergenic 45.0%
CGTCTACTTGCATCTGAACT+TGG - chr4_3:10611154-10611173 None:intergenic 45.0%
! ACTACGACTTACGTATTGGC+GGG - chr4_3:10611191-10611210 None:intergenic 45.0%
GACTACGACTTACGTATTGG+CGG - chr4_3:10611192-10611211 None:intergenic 45.0%
TAATGCGTGCTGTATGACGT+CGG - chr4_3:10611279-10611298 None:intergenic 45.0%
TAGCATGCCCAAGCAAACAA+GGG + chr4_3:10611300-10611319 Msa0629690:CDS 45.0%
AACCGGTAACCACGATTTCT+TGG - chr4_3:10611390-10611409 None:intergenic 45.0%
TGAACCAAGCTCAATAGTGC+TGG - chr4_3:10611493-10611512 None:intergenic 45.0%
GAGCCTCTCCAATATCCATT+AGG - chr4_3:10611565-10611584 None:intergenic 45.0%
TGGGACGTTCTCAATTGATG+AGG + chr4_3:10612070-10612089 Msa0629690:CDS 45.0%
ATGCTGAGATTGAGTTAGGG+GGG + chr4_3:10612144-10612163 Msa0629690:CDS 45.0%
TCCAATGCAAACACAGGTTG+CGG + chr4_3:10612240-10612259 Msa0629690:CDS 45.0%
!!! GTTTTTTTATAATAAAAAAA+TGG - chr4_3:10607882-10607901 None:intergenic 5.0%
!!! AAAAATATCTTTTTTAAATT+GGG - chr4_3:10608146-10608165 None:intergenic 5.0%
! GAGAGCCGAAGTGCTCTAAA+AGG + chr4_3:10607342-10607361 Msa0629690:CDS 50.0%
CTTACCATACAGCCGAACTC+TGG - chr4_3:10607534-10607553 None:intergenic 50.0%
GCTGTGAGAGTGACCCTAAT+CGG + chr4_3:10607772-10607791 Msa0629690:intron 50.0%
AGGGACATCACAAGAGGAAG+AGG - chr4_3:10609041-10609060 None:intergenic 50.0%
! TGGCTCTTTTAGTACGACCG+TGG + chr4_3:10609174-10609193 Msa0629690:intron 50.0%
! CTCTTTTAGTACGACCGTGG+AGG + chr4_3:10609177-10609196 Msa0629690:intron 50.0%
GGAGAAGGAATCCGTCAACA+GGG + chr4_3:10609258-10609277 Msa0629690:intron 50.0%
! GTGGAGAAATGGGGTATCCA+AGG + chr4_3:10610991-10611010 Msa0629690:intron 50.0%
CACCAAGTTCATCGCGAAGT+AGG + chr4_3:10611221-10611240 Msa0629690:CDS 50.0%
CTCCTACTTCGCGATGAACT+TGG - chr4_3:10611226-10611245 None:intergenic 50.0%
GTAGCATGCCCAAGCAAACA+AGG + chr4_3:10611299-10611318 Msa0629690:CDS 50.0%
!! ATCGTGGTTACCGGTTTGTG+AGG + chr4_3:10611394-10611413 Msa0629690:intron 50.0%
!! TCAATAGTGCTGGTCGTGAG+GGG - chr4_3:10611483-10611502 None:intergenic 50.0%
!! CTCAATAGTGCTGGTCGTGA+GGG - chr4_3:10611484-10611503 None:intergenic 50.0%
ACGACCAGCACTATTGAGCT+TGG + chr4_3:10611486-10611505 Msa0629690:intron 50.0%
!! CTCTCTGTTTCTGTGTCGGT+TGG - chr4_3:10611982-10612001 None:intergenic 50.0%
GATTGAGTTAGGGGGGCAAA+TGG + chr4_3:10612151-10612170 Msa0629690:CDS 50.0%
TCCGCAACCTGTGTTTGCAT+TGG - chr4_3:10612244-10612263 None:intergenic 50.0%
ATGCAAACACAGGTTGCGGA+TGG + chr4_3:10612244-10612263 Msa0629690:CDS 50.0%
ACATGTCTCGCAGCAGATCC+AGG + chr4_3:10608563-10608582 Msa0629690:intron 55.0%
GGAGAGGATCTAGACGCTGT+AGG + chr4_3:10608883-10608902 Msa0629690:intron 55.0%
CGGAGAAGGAATCCGTCAAC+AGG + chr4_3:10609257-10609276 Msa0629690:intron 55.0%
ACCAGCACGCGCATGTTTCA+TGG - chr4_3:10610579-10610598 None:intergenic 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG - chr4_3:10611482-10611501 None:intergenic 55.0%
!! GCTCAATAGTGCTGGTCGTG+AGG - chr4_3:10611485-10611504 None:intergenic 55.0%
GGGGGGCAAATGGCTTATAG+AGG + chr4_3:10612161-10612180 Msa0629690:CDS 55.0%
GCCATGAAACATGCGCGTGC+TGG + chr4_3:10610575-10610594 Msa0629690:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10607177 10612277 10607177 ID=Msa0629690;Name=Msa0629690
chr4_3 mRNA 10607177 10612277 10607177 ID=Msa0629690-mRNA-1;Parent=Msa0629690;Name=Msa0629690-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.66|1|1|3|0|256
chr4_3 exon 10607177 10607402 10607177 ID=Msa0629690-mRNA-1:exon:3279;Parent=Msa0629690-mRNA-1
chr4_3 exon 10611161 10611331 10611161 ID=Msa0629690-mRNA-1:exon:3280;Parent=Msa0629690-mRNA-1
chr4_3 exon 10611904 10612277 10611904 ID=Msa0629690-mRNA-1:exon:3281;Parent=Msa0629690-mRNA-1
chr4_3 CDS 10607177 10607402 10607177 ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1
chr4_3 CDS 10611161 10611331 10611161 ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1
chr4_3 CDS 10611904 10612277 10611904 ID=Msa0629690-mRNA-1:cds;Parent=Msa0629690-mRNA-1
Gene Sequence

>Msa0629690

ATGGCTACACATCCAATCAGAAACTTCCCAGCAAATATTCTTATTCTCGATGGGAAGAACTACAATAATTGGAGCAAGCAAATGAAGGTGATGTTCGGAATCCAAGACATTTGGGATTTGGTGCAAAATAGGTTAGCTCCCATTAGTGGTCGTGCGACAAATGAAGAGAGCCGAAGTGCTCTAAAAGGCGATATAACCAAAGTGAACATTTTTTTTGCTATAAAAGATGCAAGTAGACGTCATAAATCTGGTTCCCGCCAATACGTAAGTCGTAGTCCATCAAGATCACCAAGTTCATCGCGAAGTAGGAGTTTACCTGCAATGCAAAGTAAAAGTAAAAACCGACGTCATACAGCACGCATTAGTAGCATGCCCAAGCAAACAAGGGTTATATCAGAACAACAATTTTCGCCACAAGAAGGAATTGACATTGAGTTCAAGTCATTGAGCCTTACAGCAGAAGATGAGCTATCCAACCGACACAGAAACAGAGAGATATATGACGATGTTTCAGCCAATTTGAGAAGCATTAAGAAACGGTTGAAACATCTTTCAGAGAATAATGGGACGTTCTCAATTGATGAGGCCATTGAAATATCTGATGCAGCATTTCTCTTGAAGATTTTGAGAAAACCAAATGCTGAGATTGAGTTAGGGGGGCAAATGGCTTATAGAGGTGCACTTTTGTTGCTTCAAGCAGATTTGTTAAAGAAGAAAGCACATGAAATACTTGTCCAATGCAAACACAGGTTGCGGATGGCAGACCTTTAG

Protein sequence

>Msa0629690

MATHPIRNFPANILILDGKNYNNWSKQMKVMFGIQDIWDLVQNRLAPISGRATNEESRSALKGDITKVNIFFAIKDASRRHKSGSRQYVSRSPSRSPSSSRSRSLPAMQSKSKNRRHTARISSMPKQTRVISEQQFSPQEGIDIEFKSLSLTAEDELSNRHRNREIYDDVSANLRSIKKRLKHLSENNGTFSIDEAIEISDAAFLLKILRKPNAEIELGGQMAYRGALLLLQADLLKKKAHEILVQCKHRLRMADL*