Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0591800 | Msa0667820 | 0.800245 | 1.577582e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAATGTGGAGCTTACT+TGG | 0.287914 | 4_4:+8506595 | Msa0667820:CDS |
| ACGATCTTGGAATAACTATT+AGG | 0.331609 | 4_4:+8507621 | Msa0667820:CDS |
| TACATTAAGAAGTAAATTGC+AGG | 0.375038 | 4_4:-8506357 | None:intergenic |
| AATGCCTTCGACAACGATCT+TGG | 0.384210 | 4_4:+8507608 | Msa0667820:CDS |
| TGTGAGATACACTTATTGTT+TGG | 0.393882 | 4_4:-8506111 | None:intergenic |
| TTTCTTGTGATGTTGATGTT+GGG | 0.402387 | 4_4:-8506244 | None:intergenic |
| AGGAGATTCCACTGTTGGTT+TGG | 0.435668 | 4_4:+8507577 | Msa0667820:CDS |
| CCAAGTAAGCTCCACATTTG+TGG | 0.459503 | 4_4:-8506595 | None:intergenic |
| GATGTAGGAGATTCCACTGT+TGG | 0.474800 | 4_4:+8507572 | Msa0667820:CDS |
| TACTTGGGCATGAGTGGAAT+CGG | 0.486669 | 4_4:+8506611 | Msa0667820:CDS |
| AGATTCCTTGCGATGGATGT+AGG | 0.500836 | 4_4:+8507557 | Msa0667820:CDS |
| TTCTTGTGATGTTGATGTTG+GGG | 0.502774 | 4_4:-8506243 | None:intergenic |
| CACAAATGTGGAGCTTACTT+GGG | 0.543543 | 4_4:+8506596 | Msa0667820:CDS |
| ATATTGAGCGACTTCCGCCT+TGG | 0.554908 | 4_4:-8507504 | None:intergenic |
| TCGAGCTAGATTCCTTGCGA+TGG | 0.573061 | 4_4:+8507550 | Msa0667820:CDS |
| ATGACGTTCGAGGTGTGCTA+TGG | 0.574715 | 4_4:+8506570 | Msa0667820:CDS |
| TCTTGTGATGTTGATGTTGG+GGG | 0.575083 | 4_4:-8506242 | None:intergenic |
| GAGATGGTGCGCAGGAACCT+CGG | 0.575273 | 4_4:+8506536 | Msa0667820:exon |
| GGAGAACACAATGACGTTCG+AGG | 0.592255 | 4_4:+8506560 | Msa0667820:CDS |
| TACAGTAGGAGATGGTGCGC+AGG | 0.603489 | 4_4:+8506528 | Msa0667820:intron |
| TATTCCAAGATCGTTGTCGA+AGG | 0.606783 | 4_4:-8507612 | None:intergenic |
| GGAGCTTACTTGGGCATGAG+TGG | 0.617303 | 4_4:+8506605 | Msa0667820:CDS |
| TATATCAAACAAAACTTCAG+CGG | 0.633047 | 4_4:+8507524 | Msa0667820:CDS |
| GTGCTATGGCTCCACAAATG+TGG | 0.642932 | 4_4:+8506584 | Msa0667820:CDS |
| ACATTAAGAAGTAAATTGCA+GGG | 0.645380 | 4_4:-8506356 | None:intergenic |
| CGTCATTGTGTTCTCCGCCG+AGG | 0.650776 | 4_4:-8506553 | None:intergenic |
| AATCTCCTACATCCATCGCA+AGG | 0.662249 | 4_4:-8507562 | None:intergenic |
| TGAGACTGCCAAACCAACAG+TGG | 0.665209 | 4_4:-8507585 | None:intergenic |
| GAAGCAGTTGCTTACCAAGG+CGG | 0.695307 | 4_4:+8507490 | Msa0667820:CDS |
| GATGAAGCAGTTGCTTACCA+AGG | 0.716521 | 4_4:+8507487 | Msa0667820:CDS |
| ATGGTGCGCAGGAACCTCGG+CGG | 0.767835 | 4_4:+8506539 | Msa0667820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTAGTTTTTG+TGG | + | chr4_4:8507457-8507476 | Msa0667820:intron | 10.0% |
| !!! | TTTTTTTTTTTTAGTTTTTG+TGG | + | chr4_4:8507457-8507476 | Msa0667820:intron | 10.0% |
| !!! | TATTCTTAAATCTTTTTCAA+AGG | - | chr4_4:8506165-8506184 | None:intergenic | 15.0% |
| !! | TGAAAAAGATTTAAGAATAT+TGG | + | chr4_4:8506166-8506185 | Msa0667820:five_prime_UTR | 15.0% |
| !! | TTGTTTGTAAAGTTATAATT+TGG | + | chr4_4:8507124-8507143 | Msa0667820:intron | 15.0% |
| !! | TAGAAAATGAATTTAATATC+TGG | + | chr4_4:8507170-8507189 | Msa0667820:intron | 15.0% |
| !! | AAAAATGAAAAACAGTTAAA+GGG | - | chr4_4:8507288-8507307 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAAACAGTTAA+AGG | - | chr4_4:8507289-8507308 | None:intergenic | 15.0% |
| !! | TTCATATTCTATAAATCATT+TGG | - | chr4_4:8507366-8507385 | None:intergenic | 15.0% |
| !!! | TATTCTTAAATCTTTTTCAA+AGG | - | chr4_4:8506165-8506184 | None:intergenic | 15.0% |
| !! | TGAAAAAGATTTAAGAATAT+TGG | + | chr4_4:8506166-8506185 | Msa0667820:five_prime_UTR | 15.0% |
| !! | TTGTTTGTAAAGTTATAATT+TGG | + | chr4_4:8507124-8507143 | Msa0667820:intron | 15.0% |
| !! | TAGAAAATGAATTTAATATC+TGG | + | chr4_4:8507170-8507189 | Msa0667820:intron | 15.0% |
| !! | AAAAATGAAAAACAGTTAAA+GGG | - | chr4_4:8507288-8507307 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAAACAGTTAA+AGG | - | chr4_4:8507289-8507308 | None:intergenic | 15.0% |
| !! | TTCATATTCTATAAATCATT+TGG | - | chr4_4:8507366-8507385 | None:intergenic | 15.0% |
| !!! | AGAATATTTTGTTGTTTTTG+CGG | + | chr4_4:8506135-8506154 | Msa0667820:five_prime_UTR | 20.0% |
| !!! | TGTATTTTGTCAAGAAATTA+AGG | + | chr4_4:8506376-8506395 | Msa0667820:five_prime_UTR | 20.0% |
| !!! | TCAAAAAATATCTTTTCTAC+AGG | - | chr4_4:8506904-8506923 | None:intergenic | 20.0% |
| !!! | ACAACTAAAATGTACTTTTT+AGG | - | chr4_4:8507017-8507036 | None:intergenic | 20.0% |
| !!! | AATTTGATTTCATTTTCGTT+TGG | + | chr4_4:8507261-8507280 | Msa0667820:intron | 20.0% |
| !!! | TTTTAGTTTTTGTGGATTTA+AGG | + | chr4_4:8507465-8507484 | Msa0667820:intron | 20.0% |
| !!! | AGAATATTTTGTTGTTTTTG+CGG | + | chr4_4:8506135-8506154 | Msa0667820:five_prime_UTR | 20.0% |
| !!! | TGTATTTTGTCAAGAAATTA+AGG | + | chr4_4:8506376-8506395 | Msa0667820:five_prime_UTR | 20.0% |
| !!! | TCAAAAAATATCTTTTCTAC+AGG | - | chr4_4:8506904-8506923 | None:intergenic | 20.0% |
| !!! | ACAACTAAAATGTACTTTTT+AGG | - | chr4_4:8507017-8507036 | None:intergenic | 20.0% |
| !!! | AATTTGATTTCATTTTCGTT+TGG | + | chr4_4:8507261-8507280 | Msa0667820:intron | 20.0% |
| !!! | TTTTAGTTTTTGTGGATTTA+AGG | + | chr4_4:8507465-8507484 | Msa0667820:intron | 20.0% |
| !!! | TTAGTGAATTTTAGAGCATT+GGG | - | chr4_4:8506205-8506224 | None:intergenic | 25.0% |
| ! | ACATTAAGAAGTAAATTGCA+GGG | - | chr4_4:8506359-8506378 | None:intergenic | 25.0% |
| ! | TACATTAAGAAGTAAATTGC+AGG | - | chr4_4:8506360-8506379 | None:intergenic | 25.0% |
| ! | GAACAAAATGCAAATATAGA+CGG | - | chr4_4:8506656-8506675 | None:intergenic | 25.0% |
| !! | ATGTTTTCATCCTTTCTTTT+TGG | + | chr4_4:8506739-8506758 | Msa0667820:intron | 25.0% |
| ! | TCAATAACTTCCAAAAAGAA+AGG | - | chr4_4:8506752-8506771 | None:intergenic | 25.0% |
| !! | AAATATCTTTTCTACAGGTT+TGG | - | chr4_4:8506899-8506918 | None:intergenic | 25.0% |
| !!! | TGTACTTTTTAGGATGAAAT+GGG | - | chr4_4:8507007-8507026 | None:intergenic | 25.0% |
| !!! | ATGTACTTTTTAGGATGAAA+TGG | - | chr4_4:8507008-8507027 | None:intergenic | 25.0% |
| ! | GTTTGTGTATTCAAAAGAAT+CGG | + | chr4_4:8507083-8507102 | Msa0667820:intron | 25.0% |
| !!! | AAGAATCGGATGTAATTTTT+TGG | + | chr4_4:8507097-8507116 | Msa0667820:intron | 25.0% |
| ! | ATAGATTCATGTTGTAAGTT+TGG | + | chr4_4:8507399-8507418 | Msa0667820:intron | 25.0% |
| ! | TATATCAAACAAAACTTCAG+CGG | + | chr4_4:8507524-8507543 | Msa0667820:CDS | 25.0% |
| !!! | TTAGTGAATTTTAGAGCATT+GGG | - | chr4_4:8506205-8506224 | None:intergenic | 25.0% |
| ! | ACATTAAGAAGTAAATTGCA+GGG | - | chr4_4:8506359-8506378 | None:intergenic | 25.0% |
| ! | TACATTAAGAAGTAAATTGC+AGG | - | chr4_4:8506360-8506379 | None:intergenic | 25.0% |
| ! | GAACAAAATGCAAATATAGA+CGG | - | chr4_4:8506656-8506675 | None:intergenic | 25.0% |
| !! | ATGTTTTCATCCTTTCTTTT+TGG | + | chr4_4:8506739-8506758 | Msa0667820:intron | 25.0% |
| ! | TCAATAACTTCCAAAAAGAA+AGG | - | chr4_4:8506752-8506771 | None:intergenic | 25.0% |
| !! | AAATATCTTTTCTACAGGTT+TGG | - | chr4_4:8506899-8506918 | None:intergenic | 25.0% |
| !!! | TGTACTTTTTAGGATGAAAT+GGG | - | chr4_4:8507007-8507026 | None:intergenic | 25.0% |
| !!! | ATGTACTTTTTAGGATGAAA+TGG | - | chr4_4:8507008-8507027 | None:intergenic | 25.0% |
| ! | GTTTGTGTATTCAAAAGAAT+CGG | + | chr4_4:8507083-8507102 | Msa0667820:intron | 25.0% |
| !!! | AAGAATCGGATGTAATTTTT+TGG | + | chr4_4:8507097-8507116 | Msa0667820:intron | 25.0% |
| ! | ATAGATTCATGTTGTAAGTT+TGG | + | chr4_4:8507399-8507418 | Msa0667820:intron | 25.0% |
| ! | TATATCAAACAAAACTTCAG+CGG | + | chr4_4:8507524-8507543 | Msa0667820:CDS | 25.0% |
| !!! | GTTAGTGAATTTTAGAGCAT+TGG | - | chr4_4:8506206-8506225 | None:intergenic | 30.0% |
| TTTCTTGTGATGTTGATGTT+GGG | - | chr4_4:8506247-8506266 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTGATGTTGATGT+TGG | - | chr4_4:8506248-8506267 | None:intergenic | 30.0% |
| !!! | TTTACTAGCTTTTTTGTGCT+TGG | - | chr4_4:8506313-8506332 | None:intergenic | 30.0% |
| CTCTATATAGACATGTTACA+TGG | - | chr4_4:8506439-8506458 | None:intergenic | 30.0% | |
| ! | ATGTATTTTGTTGCTACAGT+AGG | + | chr4_4:8506514-8506533 | Msa0667820:intron | 30.0% |
| AACTAGAGCTGTTAATTTAG+AGG | + | chr4_4:8506964-8506983 | Msa0667820:intron | 30.0% | |
| ACTAGAGCTGTTAATTTAGA+GGG | + | chr4_4:8506965-8506984 | Msa0667820:intron | 30.0% | |
| !!! | GTACTTTTTAGGATGAAATG+GGG | - | chr4_4:8507006-8507025 | None:intergenic | 30.0% |
| TTTAGTTGTCAATGATCCTA+AGG | + | chr4_4:8507028-8507047 | Msa0667820:intron | 30.0% | |
| !! | AATGATCCTAAGGTTACTTT+TGG | + | chr4_4:8507038-8507057 | Msa0667820:intron | 30.0% |
| ! | TCTGGAATCATCTATCTATA+AGG | + | chr4_4:8507188-8507207 | Msa0667820:intron | 30.0% |
| TCTATAAGGCTTAAAGAACA+TGG | + | chr4_4:8507202-8507221 | Msa0667820:intron | 30.0% | |
| GTTGTAAGTTTGGATATTTC+AGG | + | chr4_4:8507409-8507428 | Msa0667820:intron | 30.0% | |
| ACGATCTTGGAATAACTATT+AGG | + | chr4_4:8507621-8507640 | Msa0667820:CDS | 30.0% | |
| !!! | GTTAGTGAATTTTAGAGCAT+TGG | - | chr4_4:8506206-8506225 | None:intergenic | 30.0% |
| TTTCTTGTGATGTTGATGTT+GGG | - | chr4_4:8506247-8506266 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTGATGTTGATGT+TGG | - | chr4_4:8506248-8506267 | None:intergenic | 30.0% |
| !!! | TTTACTAGCTTTTTTGTGCT+TGG | - | chr4_4:8506313-8506332 | None:intergenic | 30.0% |
| CTCTATATAGACATGTTACA+TGG | - | chr4_4:8506439-8506458 | None:intergenic | 30.0% | |
| ! | ATGTATTTTGTTGCTACAGT+AGG | + | chr4_4:8506514-8506533 | Msa0667820:intron | 30.0% |
| AACTAGAGCTGTTAATTTAG+AGG | + | chr4_4:8506964-8506983 | Msa0667820:intron | 30.0% | |
| ACTAGAGCTGTTAATTTAGA+GGG | + | chr4_4:8506965-8506984 | Msa0667820:intron | 30.0% | |
| !!! | GTACTTTTTAGGATGAAATG+GGG | - | chr4_4:8507006-8507025 | None:intergenic | 30.0% |
| TTTAGTTGTCAATGATCCTA+AGG | + | chr4_4:8507028-8507047 | Msa0667820:intron | 30.0% | |
| !! | AATGATCCTAAGGTTACTTT+TGG | + | chr4_4:8507038-8507057 | Msa0667820:intron | 30.0% |
| ! | TCTGGAATCATCTATCTATA+AGG | + | chr4_4:8507188-8507207 | Msa0667820:intron | 30.0% |
| TCTATAAGGCTTAAAGAACA+TGG | + | chr4_4:8507202-8507221 | Msa0667820:intron | 30.0% | |
| GTTGTAAGTTTGGATATTTC+AGG | + | chr4_4:8507409-8507428 | Msa0667820:intron | 30.0% | |
| !!! | TGAATTTTAGAGCATTGGGT+GGG | - | chr4_4:8506201-8506220 | None:intergenic | 35.0% |
| TTCTTGTGATGTTGATGTTG+GGG | - | chr4_4:8506246-8506265 | None:intergenic | 35.0% | |
| ! | TCATGAATGAAGCATTTGTG+TGG | + | chr4_4:8506470-8506489 | Msa0667820:intron | 35.0% |
| ! | CTTGCTCTACTTTCTTTTCT+TGG | + | chr4_4:8506680-8506699 | Msa0667820:intron | 35.0% |
| AAAACCAGTAGTGTCAAGTT+TGG | + | chr4_4:8506801-8506820 | Msa0667820:intron | 35.0% | |
| TTTACCAAACTTGACACTAC+TGG | - | chr4_4:8506808-8506827 | None:intergenic | 35.0% | |
| TTTCTTGCATATTCGTCTGT+TGG | - | chr4_4:8506832-8506851 | None:intergenic | 35.0% | |
| ATATGCAAGAAAACACGTCA+TGG | + | chr4_4:8506840-8506859 | Msa0667820:intron | 35.0% | |
| ! | AATTAACAGCTCTAGTTGAG+AGG | - | chr4_4:8506961-8506980 | None:intergenic | 35.0% |
| !!! | TGAATTTTAGAGCATTGGGT+GGG | - | chr4_4:8506201-8506220 | None:intergenic | 35.0% |
| TTCTTGTGATGTTGATGTTG+GGG | - | chr4_4:8506246-8506265 | None:intergenic | 35.0% | |
| ! | TCATGAATGAAGCATTTGTG+TGG | + | chr4_4:8506470-8506489 | Msa0667820:intron | 35.0% |
| ! | CTTGCTCTACTTTCTTTTCT+TGG | + | chr4_4:8506680-8506699 | Msa0667820:intron | 35.0% |
| AAAACCAGTAGTGTCAAGTT+TGG | + | chr4_4:8506801-8506820 | Msa0667820:intron | 35.0% | |
| TTTACCAAACTTGACACTAC+TGG | - | chr4_4:8506808-8506827 | None:intergenic | 35.0% | |
| TTTCTTGCATATTCGTCTGT+TGG | - | chr4_4:8506832-8506851 | None:intergenic | 35.0% | |
| ATATGCAAGAAAACACGTCA+TGG | + | chr4_4:8506840-8506859 | Msa0667820:intron | 35.0% | |
| ! | AATTAACAGCTCTAGTTGAG+AGG | - | chr4_4:8506961-8506980 | None:intergenic | 35.0% |
| !!! | GTGAATTTTAGAGCATTGGG+TGG | - | chr4_4:8506202-8506221 | None:intergenic | 40.0% |
| TCTTGTGATGTTGATGTTGG+GGG | - | chr4_4:8506245-8506264 | None:intergenic | 40.0% | |
| CTGCTATACTAAGCACACAA+TGG | - | chr4_4:8506416-8506435 | None:intergenic | 40.0% | |
| ! | AATGAAGCATTTGTGTGGTC+TGG | + | chr4_4:8506475-8506494 | Msa0667820:intron | 40.0% |
| TTTGTTGCTACAGTAGGAGA+TGG | + | chr4_4:8506520-8506539 | Msa0667820:intron | 40.0% | |
| CACAAATGTGGAGCTTACTT+GGG | + | chr4_4:8506596-8506615 | Msa0667820:CDS | 40.0% | |
| CATGAGTGGAATCGGTAAAT+AGG | + | chr4_4:8506619-8506638 | Msa0667820:intron | 40.0% | |
| TTTCGATCACACCGTAAGTT+TGG | - | chr4_4:8506784-8506803 | None:intergenic | 40.0% | |
| CAAGAAAACACGTCATGGAT+GGG | + | chr4_4:8506845-8506864 | Msa0667820:intron | 40.0% | |
| AAATGGGGCTCATATTGTCA+AGG | - | chr4_4:8506991-8507010 | None:intergenic | 40.0% | |
| TCTCGACCAAAAGTAACCTT+AGG | - | chr4_4:8507047-8507066 | None:intergenic | 40.0% | |
| TTGGTCGAGAAGAACATGAT+AGG | + | chr4_4:8507057-8507076 | Msa0667820:intron | 40.0% | |
| AGGCTTAAAGAACATGGATC+AGG | + | chr4_4:8507208-8507227 | Msa0667820:intron | 40.0% | |
| CTTAAAGAACATGGATCAGG+TGG | + | chr4_4:8507211-8507230 | Msa0667820:intron | 40.0% | |
| TATTCCAAGATCGTTGTCGA+AGG | - | chr4_4:8507615-8507634 | None:intergenic | 40.0% | |
| !!! | GTGAATTTTAGAGCATTGGG+TGG | - | chr4_4:8506202-8506221 | None:intergenic | 40.0% |
| TCTTGTGATGTTGATGTTGG+GGG | - | chr4_4:8506245-8506264 | None:intergenic | 40.0% | |
| CTGCTATACTAAGCACACAA+TGG | - | chr4_4:8506416-8506435 | None:intergenic | 40.0% | |
| ! | AATGAAGCATTTGTGTGGTC+TGG | + | chr4_4:8506475-8506494 | Msa0667820:intron | 40.0% |
| TTTGTTGCTACAGTAGGAGA+TGG | + | chr4_4:8506520-8506539 | Msa0667820:intron | 40.0% | |
| CACAAATGTGGAGCTTACTT+GGG | + | chr4_4:8506596-8506615 | Msa0667820:CDS | 40.0% | |
| CATGAGTGGAATCGGTAAAT+AGG | + | chr4_4:8506619-8506638 | Msa0667820:intron | 40.0% | |
| TTTCGATCACACCGTAAGTT+TGG | - | chr4_4:8506784-8506803 | None:intergenic | 40.0% | |
| CAAGAAAACACGTCATGGAT+GGG | + | chr4_4:8506845-8506864 | Msa0667820:intron | 40.0% | |
| AAATGGGGCTCATATTGTCA+AGG | - | chr4_4:8506991-8507010 | None:intergenic | 40.0% | |
| TCTCGACCAAAAGTAACCTT+AGG | - | chr4_4:8507047-8507066 | None:intergenic | 40.0% | |
| TTGGTCGAGAAGAACATGAT+AGG | + | chr4_4:8507057-8507076 | Msa0667820:intron | 40.0% | |
| AGGCTTAAAGAACATGGATC+AGG | + | chr4_4:8507208-8507227 | Msa0667820:intron | 40.0% | |
| CTTAAAGAACATGGATCAGG+TGG | + | chr4_4:8507211-8507230 | Msa0667820:intron | 40.0% | |
| TATTCCAAGATCGTTGTCGA+AGG | - | chr4_4:8507615-8507634 | None:intergenic | 40.0% | |
| CCAAGTAAGCTCCACATTTG+TGG | - | chr4_4:8506598-8506617 | None:intergenic | 45.0% | |
| CCACAAATGTGGAGCTTACT+TGG | + | chr4_4:8506595-8506614 | Msa0667820:CDS | 45.0% | |
| TACTTGGGCATGAGTGGAAT+CGG | + | chr4_4:8506611-8506630 | Msa0667820:CDS | 45.0% | |
| GAAAACCCCCACCAAACTTA+CGG | + | chr4_4:8506770-8506789 | Msa0667820:intron | 45.0% | |
| ! | ATCACACCGTAAGTTTGGTG+GGG | - | chr4_4:8506779-8506798 | None:intergenic | 45.0% |
| GATCACACCGTAAGTTTGGT+GGG | - | chr4_4:8506780-8506799 | None:intergenic | 45.0% | |
| GCAAGAAAACACGTCATGGA+TGG | + | chr4_4:8506844-8506863 | Msa0667820:intron | 45.0% | |
| ! | TCTACAGGTTTGGTTCGATC+CGG | - | chr4_4:8506889-8506908 | None:intergenic | 45.0% |
| AAAGAACATGGATCAGGTGG+TGG | + | chr4_4:8507214-8507233 | Msa0667820:intron | 45.0% | |
| GATGAAGCAGTTGCTTACCA+AGG | + | chr4_4:8507487-8507506 | Msa0667820:CDS | 45.0% | |
| AGATTCCTTGCGATGGATGT+AGG | + | chr4_4:8507557-8507576 | Msa0667820:CDS | 45.0% | |
| AATCTCCTACATCCATCGCA+AGG | - | chr4_4:8507565-8507584 | None:intergenic | 45.0% | |
| GATGTAGGAGATTCCACTGT+TGG | + | chr4_4:8507572-8507591 | Msa0667820:CDS | 45.0% | |
| ! | AGGAGATTCCACTGTTGGTT+TGG | + | chr4_4:8507577-8507596 | Msa0667820:CDS | 45.0% |
| AATGCCTTCGACAACGATCT+TGG | + | chr4_4:8507608-8507627 | Msa0667820:CDS | 45.0% | |
| CCAAGTAAGCTCCACATTTG+TGG | - | chr4_4:8506598-8506617 | None:intergenic | 45.0% | |
| CCACAAATGTGGAGCTTACT+TGG | + | chr4_4:8506595-8506614 | Msa0667820:CDS | 45.0% | |
| TACTTGGGCATGAGTGGAAT+CGG | + | chr4_4:8506611-8506630 | Msa0667820:CDS | 45.0% | |
| GAAAACCCCCACCAAACTTA+CGG | + | chr4_4:8506770-8506789 | Msa0667820:intron | 45.0% | |
| ! | ATCACACCGTAAGTTTGGTG+GGG | - | chr4_4:8506779-8506798 | None:intergenic | 45.0% |
| GATCACACCGTAAGTTTGGT+GGG | - | chr4_4:8506780-8506799 | None:intergenic | 45.0% | |
| GCAAGAAAACACGTCATGGA+TGG | + | chr4_4:8506844-8506863 | Msa0667820:intron | 45.0% | |
| ! | TCTACAGGTTTGGTTCGATC+CGG | - | chr4_4:8506889-8506908 | None:intergenic | 45.0% |
| AAAGAACATGGATCAGGTGG+TGG | + | chr4_4:8507214-8507233 | Msa0667820:intron | 45.0% | |
| GATGAAGCAGTTGCTTACCA+AGG | + | chr4_4:8507487-8507506 | Msa0667820:CDS | 45.0% | |
| AGATTCCTTGCGATGGATGT+AGG | + | chr4_4:8507557-8507576 | Msa0667820:CDS | 45.0% | |
| AATCTCCTACATCCATCGCA+AGG | - | chr4_4:8507565-8507584 | None:intergenic | 45.0% | |
| GATGTAGGAGATTCCACTGT+TGG | + | chr4_4:8507572-8507591 | Msa0667820:CDS | 45.0% | |
| ! | AGGAGATTCCACTGTTGGTT+TGG | + | chr4_4:8507577-8507596 | Msa0667820:CDS | 45.0% |
| AATGCCTTCGACAACGATCT+TGG | + | chr4_4:8507608-8507627 | Msa0667820:CDS | 45.0% | |
| !!! | TTTTAAAATGAAAAAAAAAA+AGG | + | chr4_4:8507304-8507323 | Msa0667820:intron | 5.0% |
| !!! | TTTTAAAATGAAAAAAAAAA+AGG | + | chr4_4:8507304-8507323 | Msa0667820:intron | 5.0% |
| TGTGATGTTGATGTTGGGGG+TGG | - | chr4_4:8506242-8506261 | None:intergenic | 50.0% | |
| GGAGAACACAATGACGTTCG+AGG | + | chr4_4:8506560-8506579 | Msa0667820:CDS | 50.0% | |
| ATGACGTTCGAGGTGTGCTA+TGG | + | chr4_4:8506570-8506589 | Msa0667820:CDS | 50.0% | |
| GTGCTATGGCTCCACAAATG+TGG | + | chr4_4:8506584-8506603 | Msa0667820:CDS | 50.0% | |
| ! | TCACACCGTAAGTTTGGTGG+GGG | - | chr4_4:8506778-8506797 | None:intergenic | 50.0% |
| CGATCACACCGTAAGTTTGG+TGG | - | chr4_4:8506781-8506800 | None:intergenic | 50.0% | |
| GTCACCAAACCAGTATAGCC+CGG | + | chr4_4:8506867-8506886 | Msa0667820:intron | 50.0% | |
| ! | CTACAGGTTTGGTTCGATCC+GGG | - | chr4_4:8506888-8506907 | None:intergenic | 50.0% |
| GAAGCAGTTGCTTACCAAGG+CGG | + | chr4_4:8507490-8507509 | Msa0667820:CDS | 50.0% | |
| ATATTGAGCGACTTCCGCCT+TGG | - | chr4_4:8507507-8507526 | None:intergenic | 50.0% | |
| TCGAGCTAGATTCCTTGCGA+TGG | + | chr4_4:8507550-8507569 | Msa0667820:CDS | 50.0% | |
| TGAGACTGCCAAACCAACAG+TGG | - | chr4_4:8507588-8507607 | None:intergenic | 50.0% | |
| TGTGATGTTGATGTTGGGGG+TGG | - | chr4_4:8506242-8506261 | None:intergenic | 50.0% | |
| GGAGAACACAATGACGTTCG+AGG | + | chr4_4:8506560-8506579 | Msa0667820:CDS | 50.0% | |
| ATGACGTTCGAGGTGTGCTA+TGG | + | chr4_4:8506570-8506589 | Msa0667820:CDS | 50.0% | |
| GTGCTATGGCTCCACAAATG+TGG | + | chr4_4:8506584-8506603 | Msa0667820:CDS | 50.0% | |
| ! | TCACACCGTAAGTTTGGTGG+GGG | - | chr4_4:8506778-8506797 | None:intergenic | 50.0% |
| CGATCACACCGTAAGTTTGG+TGG | - | chr4_4:8506781-8506800 | None:intergenic | 50.0% | |
| GTCACCAAACCAGTATAGCC+CGG | + | chr4_4:8506867-8506886 | Msa0667820:intron | 50.0% | |
| ! | CTACAGGTTTGGTTCGATCC+GGG | - | chr4_4:8506888-8506907 | None:intergenic | 50.0% |
| GAAGCAGTTGCTTACCAAGG+CGG | + | chr4_4:8507490-8507509 | Msa0667820:CDS | 50.0% | |
| ATATTGAGCGACTTCCGCCT+TGG | - | chr4_4:8507507-8507526 | None:intergenic | 50.0% | |
| TCGAGCTAGATTCCTTGCGA+TGG | + | chr4_4:8507550-8507569 | Msa0667820:CDS | 50.0% | |
| TGAGACTGCCAAACCAACAG+TGG | - | chr4_4:8507588-8507607 | None:intergenic | 50.0% | |
| TACAGTAGGAGATGGTGCGC+AGG | + | chr4_4:8506528-8506547 | Msa0667820:intron | 55.0% | |
| GGAGCTTACTTGGGCATGAG+TGG | + | chr4_4:8506605-8506624 | Msa0667820:CDS | 55.0% | |
| ! | CGATCCGGGCTATACTGGTT+TGG | - | chr4_4:8506874-8506893 | None:intergenic | 55.0% |
| TGGTTCGATCCGGGCTATAC+TGG | - | chr4_4:8506879-8506898 | None:intergenic | 55.0% | |
| TACAGTAGGAGATGGTGCGC+AGG | + | chr4_4:8506528-8506547 | Msa0667820:intron | 55.0% | |
| GGAGCTTACTTGGGCATGAG+TGG | + | chr4_4:8506605-8506624 | Msa0667820:CDS | 55.0% | |
| ! | CGATCCGGGCTATACTGGTT+TGG | - | chr4_4:8506874-8506893 | None:intergenic | 55.0% |
| TGGTTCGATCCGGGCTATAC+TGG | - | chr4_4:8506879-8506898 | None:intergenic | 55.0% | |
| GAGATGGTGCGCAGGAACCT+CGG | + | chr4_4:8506536-8506555 | Msa0667820:exon | 60.0% | |
| CGTCATTGTGTTCTCCGCCG+AGG | - | chr4_4:8506556-8506575 | None:intergenic | 60.0% | |
| GAGATGGTGCGCAGGAACCT+CGG | + | chr4_4:8506536-8506555 | Msa0667820:exon | 60.0% | |
| CGTCATTGTGTTCTCCGCCG+AGG | - | chr4_4:8506556-8506575 | None:intergenic | 60.0% | |
| ATGGTGCGCAGGAACCTCGG+CGG | + | chr4_4:8506539-8506558 | Msa0667820:CDS | 65.0% | |
| ATGGTGCGCAGGAACCTCGG+CGG | + | chr4_4:8506539-8506558 | Msa0667820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8506112 | 8507643 | 8506112 | ID=Msa0667820;Name=Msa0667820 |
| chr4_4 | mRNA | 8506112 | 8507643 | 8506112 | ID=Msa0667820-mRNA-1;Parent=Msa0667820;Name=Msa0667820-mRNA-1;_AED=0.02;_eAED=0.19;_QI=289|0|0.33|1|0.5|0.33|3|0|89 |
| chr4_4 | exon | 8506112 | 8506397 | 8506112 | ID=Msa0667820-mRNA-1:exon:2736;Parent=Msa0667820-mRNA-1 |
| chr4_4 | exon | 8506536 | 8506632 | 8506536 | ID=Msa0667820-mRNA-1:exon:2737;Parent=Msa0667820-mRNA-1 |
| chr4_4 | exon | 8507471 | 8507643 | 8507471 | ID=Msa0667820-mRNA-1:exon:2738;Parent=Msa0667820-mRNA-1 |
| chr4_4 | five_prime_UTR | 8506112 | 8506397 | 8506112 | ID=Msa0667820-mRNA-1:five_prime_utr;Parent=Msa0667820-mRNA-1 |
| chr4_4 | five_prime_UTR | 8506536 | 8506538 | 8506536 | ID=Msa0667820-mRNA-1:five_prime_utr;Parent=Msa0667820-mRNA-1 |
| chr4_4 | CDS | 8506539 | 8506632 | 8506539 | ID=Msa0667820-mRNA-1:cds;Parent=Msa0667820-mRNA-1 |
| chr4_4 | CDS | 8507471 | 8507643 | 8507471 | ID=Msa0667820-mRNA-1:cds;Parent=Msa0667820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
