Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0667850 | Msa0667860 | 0.811724 | 6.068559e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAATGTGGAGCTTACT+TGG | 0.287914 | 4_4:-8566859 | Msa0667860:CDS |
| AGCTTTCTTACTATATATAA+AGG | 0.320441 | 4_4:-8562617 | Msa0667860:three_prime_UTR |
| AATCTTGCAAATTAAAGCTT+TGG | 0.324073 | 4_4:+8567613 | None:intergenic |
| ATCTTGCAAATTAAAGCTTT+GGG | 0.341469 | 4_4:+8567614 | None:intergenic |
| GACGTGAATAAATATGTATA+TGG | 0.343337 | 4_4:-8562659 | Msa0667860:three_prime_UTR |
| CATGAGTGGAATCGGTAAAT+AGG | 0.347555 | 4_4:-8566835 | Msa0667860:intron |
| TAGAGATCGCATTGTTGGTT+TGG | 0.383888 | 4_4:-8562773 | Msa0667860:three_prime_UTR |
| TGCAAGATTCCCATGGTGAT+AGG | 0.418509 | 4_4:-8567599 | Msa0667860:intron |
| GCTTTCTTACTATATATAAA+GGG | 0.428229 | 4_4:-8562616 | Msa0667860:three_prime_UTR |
| GGATGTAGAGATCGCATTGT+TGG | 0.458984 | 4_4:-8562778 | Msa0667860:three_prime_UTR |
| CCAAGTAAGCTCCACATTTG+TGG | 0.459503 | 4_4:+8566859 | None:intergenic |
| TATATATAGTAAGAAAGCTT+CGG | 0.464866 | 4_4:+8562621 | None:intergenic |
| TCTAGCTAATTTCCTTGCAA+TGG | 0.465594 | 4_4:-8562799 | Msa0667860:three_prime_UTR |
| TACTTGGGCATGAGTGGAAT+CGG | 0.486669 | 4_4:-8566843 | Msa0667860:exon |
| ATATCAAACAAAACTTCAGT+GGG | 0.487095 | 4_4:-8562824 | Msa0667860:three_prime_UTR |
| GAGATGGTGCGCAGGAACCT+TGG | 0.524060 | 4_4:-8566918 | Msa0667860:CDS |
| TTTGTTGCTACAGTAGGAGA+TGG | 0.531206 | 4_4:-8566934 | Msa0667860:intron |
| ACGTGAATAAATATGTATAT+GGG | 0.535983 | 4_4:-8562658 | Msa0667860:three_prime_UTR |
| CACAAATGTGGAGCTTACTT+GGG | 0.543543 | 4_4:-8566858 | Msa0667860:CDS |
| TTTAATTTGCAAGATTCCCA+TGG | 0.559363 | 4_4:-8567606 | Msa0667860:CDS |
| TATATCAAACAAAACTTCAG+TGG | 0.563783 | 4_4:-8562825 | Msa0667860:three_prime_UTR |
| ATGACGTTCGAGGTGTGCTA+TGG | 0.574715 | 4_4:-8566884 | Msa0667860:CDS |
| CGTCATTGTGTTCTCCGCCA+AGG | 0.580690 | 4_4:+8566901 | None:intergenic |
| GGAGAACACAATGACGTTCG+AGG | 0.589815 | 4_4:-8566894 | Msa0667860:CDS |
| ATGGTGCGCAGGAACCTTGG+CGG | 0.596176 | 4_4:-8566915 | Msa0667860:CDS |
| TGAATCTAACCTATCACCAT+GGG | 0.596215 | 4_4:+8567590 | None:intergenic |
| TACAGTAGGAGATGGTGCGC+AGG | 0.603489 | 4_4:-8566926 | Msa0667860:intron |
| GGAGCTTACTTGGGCATGAG+TGG | 0.617303 | 4_4:-8566849 | Msa0667860:exon |
| CGATCTCTACATCCATTGCA+AGG | 0.617669 | 4_4:+8562787 | None:intergenic |
| ATGAATCTAACCTATCACCA+TGG | 0.631749 | 4_4:+8567589 | None:intergenic |
| GTGCTATGGCTCCACAAATG+TGG | 0.642932 | 4_4:-8566870 | Msa0667860:CDS |
| ATTTGAATGAATGAATGTAG+AGG | 0.643557 | 4_4:+8563615 | None:intergenic |
| GAAGCAGTTGCTTACAAAGG+CGG | 0.648665 | 4_4:-8562859 | Msa0667860:three_prime_UTR |
| GATGAAGCAGTTGCTTACAA+AGG | 0.692179 | 4_4:-8562862 | Msa0667860:three_prime_UTR |
| TATCAAACAAAACTTCAGTG+GGG | 0.730500 | 4_4:-8562823 | Msa0667860:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | + | chr4_4:8566892-8566911 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr4_4:8566893-8566912 | None:intergenic | 0.0% |
| !!! | ATTTTTTTAAATTTATAATT+TGG | - | chr4_4:8566957-8566976 | Msa0667860:intron | 0.0% |
| !! | AATAGAATAAAAAAATAGAT+AGG | + | chr4_4:8563433-8563452 | None:intergenic | 10.0% |
| !! | AAATGAATTTAATATCTATA+AGG | - | chr4_4:8563864-8563883 | Msa0667860:intron | 10.0% |
| !! | TTTATTTAGTTAAAAATGTT+AGG | + | chr4_4:8564204-8564223 | None:intergenic | 10.0% |
| !!! | TATTCTTAAAACTTTTACAA+AGG | + | chr4_4:8562902-8562921 | None:intergenic | 15.0% |
| !!! | TGTAAAAGTTTTAAGAATAT+TGG | - | chr4_4:8562903-8562922 | Msa0667860:intron | 15.0% |
| !!! | TTAGTGATTTTTAGATTATT+GGG | + | chr4_4:8562941-8562960 | None:intergenic | 15.0% |
| !!! | TTTTTATTCTATTCATTACT+TGG | - | chr4_4:8563440-8563459 | Msa0667860:intron | 15.0% |
| !!! | TTTTATTCTATTCATTACTT+GGG | - | chr4_4:8563441-8563460 | Msa0667860:intron | 15.0% |
| !! | TTGTTTGTAAAGTTATAATT+TGG | - | chr4_4:8563814-8563833 | Msa0667860:intron | 15.0% |
| !! | TAAATATTTCATAAACATAG+TGG | - | chr4_4:8566193-8566212 | Msa0667860:intron | 15.0% |
| !! | TTGTAAAAAAAATTCCATAA+TGG | - | chr4_4:8566338-8566357 | Msa0667860:intron | 15.0% |
| !! | ATATATAACCCTATATATAT+GGG | - | chr4_4:8566683-8566702 | Msa0667860:intron | 15.0% |
| !! | AAAAATGAAAAACAGTTAAA+GGG | + | chr4_4:8567120-8567139 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAAACAGTTAA+AGG | + | chr4_4:8567121-8567140 | None:intergenic | 15.0% |
| !! | TTCATATTCTATAAATCATT+TGG | + | chr4_4:8567207-8567226 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTAAAGGATGA+AGG | - | chr4_4:8567292-8567311 | Msa0667860:intron | 15.0% |
| !!! | TTAGTCAACATTTTCTTTTA+TGG | + | chr4_4:8562664-8562683 | None:intergenic | 20.0% |
| !!! | GTTAGTGATTTTTAGATTAT+TGG | + | chr4_4:8562942-8562961 | None:intergenic | 20.0% |
| !!! | TGTATTTTGTCAAGAAATTA+AGG | - | chr4_4:8563100-8563119 | Msa0667860:intron | 20.0% |
| !! | TTTATTCTATTCATTACTTG+GGG | - | chr4_4:8563442-8563461 | Msa0667860:intron | 20.0% |
| !!! | TTTTGATGAGAGATAATTAT+TGG | - | chr4_4:8563563-8563582 | Msa0667860:intron | 20.0% |
| !!! | ACAACTAAAATGTACTTTTT+AGG | + | chr4_4:8563704-8563723 | None:intergenic | 20.0% |
| !! | ATTATTTACACTTGAATAGA+TGG | - | chr4_4:8564285-8564304 | Msa0667860:intron | 20.0% |
| !!! | ACTTTTTGATATTTTCAGAT+GGG | + | chr4_4:8564745-8564764 | None:intergenic | 20.0% |
| !!! | TACTTTTTGATATTTTCAGA+TGG | + | chr4_4:8564746-8564765 | None:intergenic | 20.0% |
| !!! | TTGATTTTAACAAGTGAATA+AGG | - | chr4_4:8566111-8566130 | Msa0667860:intron | 20.0% |
| !!! | TATTTATATGAGACTTTTGT+GGG | + | chr4_4:8566162-8566181 | None:intergenic | 20.0% |
| !!! | TTATTTATATGAGACTTTTG+TGG | + | chr4_4:8566163-8566182 | None:intergenic | 20.0% |
| !!! | AAAAAAAATTCCATAATGGA+TGG | - | chr4_4:8566342-8566361 | Msa0667860:intron | 20.0% |
| !! | GAAAATCAAAAGCTAAAAAA+AGG | + | chr4_4:8566511-8566530 | None:intergenic | 20.0% |
| !!! | ATTCAAATTTTAGCTAAATC+AGG | - | chr4_4:8566576-8566595 | Msa0667860:intron | 20.0% |
| !! | CATATTAAAAAGAGTAGTAA+TGG | + | chr4_4:8566623-8566642 | None:intergenic | 20.0% |
| !! | GATATATAACCCTATATATA+TGG | - | chr4_4:8566682-8566701 | Msa0667860:intron | 20.0% |
| !! | TAACAAAACCCATATATATA+GGG | + | chr4_4:8566694-8566713 | None:intergenic | 20.0% |
| !!! | GAAGTTTTGTTTGATATAAT+GGG | + | chr4_4:8567349-8567368 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTGTTTGATATAA+TGG | + | chr4_4:8567350-8567369 | None:intergenic | 20.0% |
| !! | ACAATGTTGAAAAATCTATT+AGG | - | chr4_4:8567447-8567466 | Msa0667860:intron | 20.0% |
| !! | ACGTGAATAAATATGTATAT+GGG | - | chr4_4:8567518-8567537 | Msa0667860:intron | 20.0% |
| !! | TATATATAGTAAGAAAGCTT+CGG | + | chr4_4:8567558-8567577 | None:intergenic | 20.0% |
| !! | AGCTTTCTTACTATATATAA+AGG | - | chr4_4:8567559-8567578 | Msa0667860:intron | 20.0% |
| !! | GCTTTCTTACTATATATAAA+GGG | - | chr4_4:8567560-8567579 | Msa0667860:intron | 20.0% |
| ! | ATCTTGCAAATTAAAGCTTT+GGG | + | chr4_4:8562565-8562584 | None:intergenic | 25.0% |
| ! | AATCTTGCAAATTAAAGCTT+TGG | + | chr4_4:8562566-8562585 | None:intergenic | 25.0% |
| ! | ACTAGAAGTAGAAAAATGAA+GGG | + | chr4_4:8562768-8562787 | None:intergenic | 25.0% |
| ! | AACTAGAAGTAGAAAAATGA+AGG | + | chr4_4:8562769-8562788 | None:intergenic | 25.0% |
| ! | TTAGAAAAACAATTGCCAAA+CGG | + | chr4_4:8562854-8562873 | None:intergenic | 25.0% |
| !! | GTTTTTGTTAGTATATGAGA+AGG | + | chr4_4:8563007-8563026 | None:intergenic | 25.0% |
| ! | CTCATATACTAACAAAAACA+AGG | - | chr4_4:8563008-8563027 | Msa0667860:intron | 25.0% |
| ! | ACATTAAGAAGTAAATTGCA+GGG | + | chr4_4:8563083-8563102 | None:intergenic | 25.0% |
| ! | TACATTAAGAAGTAAATTGC+AGG | + | chr4_4:8563084-8563103 | None:intergenic | 25.0% |
| ! | ACAAAATGCAAATATAGACA+CGG | + | chr4_4:8563378-8563397 | None:intergenic | 25.0% |
| !!! | GTGACTTTAGTGTATTTTAA+AGG | - | chr4_4:8563505-8563524 | Msa0667860:intron | 25.0% |
| !! | ATGAGAGATAATTATTGGTT+AGG | - | chr4_4:8563568-8563587 | Msa0667860:intron | 25.0% |
| !! | ATGTTTTCATCCTATCTTTT+TGG | - | chr4_4:8563661-8563680 | Msa0667860:intron | 25.0% |
| ! | CTTAGTAATTCCAAAAAGAT+AGG | + | chr4_4:8563674-8563693 | None:intergenic | 25.0% |
| !!! | AAGTACATTTTAGTTGTCAA+TGG | - | chr4_4:8563707-8563726 | Msa0667860:intron | 25.0% |
| ! | GTTTGTGTATTCAAAAGAAT+CGG | - | chr4_4:8563772-8563791 | Msa0667860:intron | 25.0% |
| ! | TTTGTGTATTCAAAAGAATC+GGG | - | chr4_4:8563773-8563792 | Msa0667860:intron | 25.0% |
| !!! | CCATTTGTTTTTGACATTTT+TGG | + | chr4_4:8564462-8564481 | None:intergenic | 25.0% |
| ! | CCAAAAATGTCAAAAACAAA+TGG | - | chr4_4:8564459-8564478 | Msa0667860:intron | 25.0% |
| !!! | TATCAAAAAGTACTTAAAGC+CGG | - | chr4_4:8564754-8564773 | Msa0667860:intron | 25.0% |
| ! | TCTTACGAATATTCAATTCA+AGG | - | chr4_4:8565649-8565668 | Msa0667860:intron | 25.0% |
| !!! | TTAATTAATGTGTCGACTAT+AGG | - | chr4_4:8566054-8566073 | Msa0667860:intron | 25.0% |
| !! | ATTTATATGAGACTTTTGTG+GGG | + | chr4_4:8566161-8566180 | None:intergenic | 25.0% |
| !!! | ATAATGGATGGAAGAAATTA+GGG | - | chr4_4:8566354-8566373 | Msa0667860:intron | 25.0% |
| ! | TTTGCTCTTTAGTACAAAAA+TGG | + | chr4_4:8566422-8566441 | None:intergenic | 25.0% |
| ! | ATTTGAATGAATGAATGTAG+AGG | + | chr4_4:8566564-8566583 | None:intergenic | 25.0% |
| !!! | AATTTTAGCTAAATCAGGTA+AGG | - | chr4_4:8566581-8566600 | Msa0667860:intron | 25.0% |
| ! | GTAACAAAACCCATATATAT+AGG | + | chr4_4:8566695-8566714 | None:intergenic | 25.0% |
| ! | TATATCAAACAAAACTTCAG+TGG | - | chr4_4:8567351-8567370 | Msa0667860:intron | 25.0% |
| ! | ATATCAAACAAAACTTCAGT+GGG | - | chr4_4:8567352-8567371 | Msa0667860:intron | 25.0% |
| ! | GACGTGAATAAATATGTATA+TGG | - | chr4_4:8567517-8567536 | Msa0667860:intron | 25.0% |
| !! | TTTAATTTGCAAGATTCCCA+TGG | - | chr4_4:8562570-8562589 | Msa0667860:three_prime_UTR | 30.0% |
| !!! | TATTTTTGGACACTTCTTCA+CGG | - | chr4_4:8562636-8562655 | Msa0667860:three_prime_UTR | 30.0% |
| GAGATACTCCTATATATTAG+AGG | + | chr4_4:8562727-8562746 | None:intergenic | 30.0% | |
| TAGAAAAACAATTGCCAAAC+GGG | + | chr4_4:8562853-8562872 | None:intergenic | 30.0% | |
| !! | GTGATTTTTAGATTATTGGG+TGG | + | chr4_4:8562938-8562957 | None:intergenic | 30.0% |
| TTTCTTGTGATGTTGATGTT+GGG | + | chr4_4:8562983-8563002 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTGATGTTGATGT+TGG | + | chr4_4:8562984-8563003 | None:intergenic | 30.0% |
| CTCTATATAGACATGTTACA+TGG | + | chr4_4:8563161-8563180 | None:intergenic | 30.0% | |
| TCATGAATGAAGGATTTGTA+TGG | - | chr4_4:8563192-8563211 | Msa0667860:intron | 30.0% | |
| ! | ATGTATTTTGTTGCTACAGT+AGG | - | chr4_4:8563236-8563255 | Msa0667860:intron | 30.0% |
| ATGAAAACATGCAAGTAATG+GGG | + | chr4_4:8563651-8563670 | None:intergenic | 30.0% | |
| GATGAAAACATGCAAGTAAT+GGG | + | chr4_4:8563652-8563671 | None:intergenic | 30.0% | |
| !!! | AGAATCGGGTGTAATTTTTT+TGG | - | chr4_4:8563787-8563806 | Msa0667860:intron | 30.0% |
| TCTATAAGGCTTAAAGAACA+TGG | - | chr4_4:8563878-8563897 | Msa0667860:intron | 30.0% | |
| ! | CATGAAAATACGTTTGAGTT+AGG | - | chr4_4:8563975-8563994 | Msa0667860:intron | 30.0% |
| ! | CTCATTATGACTTTTGTACA+AGG | + | chr4_4:8564227-8564246 | None:intergenic | 30.0% |
| CTTGTACAAAAGTCATAATG+AGG | - | chr4_4:8564225-8564244 | Msa0667860:intron | 30.0% | |
| !!! | ATTGGTTTTGCAATCCAAAA+AGG | + | chr4_4:8564339-8564358 | None:intergenic | 30.0% |
| ! | TTTTGATATTTTCAGATGGG+CGG | + | chr4_4:8564742-8564761 | None:intergenic | 30.0% |
| !! | ATCAAAAAGTACTTAAAGCC+GGG | - | chr4_4:8564755-8564774 | Msa0667860:intron | 30.0% |
| GAATCATAAGACGATATCTA+AGG | - | chr4_4:8564867-8564886 | Msa0667860:intron | 30.0% | |
| ! | ACAAGACAAAAGGCAATTTT+TGG | + | chr4_4:8564986-8565005 | None:intergenic | 30.0% |
| ! | AAAAATTGCCTTTTGTCTTG+TGG | - | chr4_4:8564985-8565004 | Msa0667860:intron | 30.0% |
| !! | TCTTTTTAGTAAAAGTGGTC+AGG | + | chr4_4:8565035-8565054 | None:intergenic | 30.0% |
| !! | AGTGCTCTTTTTAGTAAAAG+TGG | + | chr4_4:8565040-8565059 | None:intergenic | 30.0% |
| ATGGATTCAGATTATGTTAG+CGG | + | chr4_4:8565112-8565131 | None:intergenic | 30.0% | |
| !! | ATCATATTTTGAGAGACAGT+AGG | + | chr4_4:8565144-8565163 | None:intergenic | 30.0% |
| !!! | GAGATAAAGGTTTTATTGAG+GGG | + | chr4_4:8565519-8565538 | None:intergenic | 30.0% |
| !!! | CGAGATAAAGGTTTTATTGA+GGG | + | chr4_4:8565520-8565539 | None:intergenic | 30.0% |
| CCTCAATAAAACCTTTATCT+CGG | - | chr4_4:8565518-8565537 | Msa0667860:intron | 30.0% | |
| !! | TAAAGCTTTAGACATCATTC+GGG | + | chr4_4:8565694-8565713 | None:intergenic | 30.0% |
| !! | CTAAAGCTTTAGACATCATT+CGG | + | chr4_4:8565695-8565714 | None:intergenic | 30.0% |
| TCTCTAATCTGATGAATAAG+AGG | - | chr4_4:8565786-8565805 | Msa0667860:intron | 30.0% | |
| CTCTAATCTGATGAATAAGA+GGG | - | chr4_4:8565787-8565806 | Msa0667860:intron | 30.0% | |
| ! | TTATGGGTTGAGTTTCTTTA+TGG | + | chr4_4:8565915-8565934 | None:intergenic | 30.0% |
| TCAACCCATAAAGAAATAGA+TGG | - | chr4_4:8565924-8565943 | Msa0667860:intron | 30.0% | |
| CAACCCATAAAGAAATAGAT+GGG | - | chr4_4:8565925-8565944 | Msa0667860:intron | 30.0% | |
| ! | ATGCCCATCTATTTCTTTAT+GGG | + | chr4_4:8565931-8565950 | None:intergenic | 30.0% |
| !! | TTTTTCGAATGCTTTCAACT+TGG | + | chr4_4:8565991-8566010 | None:intergenic | 30.0% |
| CATTAATTAAACTTGCGACA+TGG | + | chr4_4:8566044-8566063 | None:intergenic | 30.0% | |
| GTCGACTATAGGTAAATAAA+AGG | - | chr4_4:8566065-8566084 | Msa0667860:intron | 30.0% | |
| ! | GGAAGCATATATTATGTCTT+TGG | - | chr4_4:8566086-8566105 | Msa0667860:intron | 30.0% |
| AGTGAATAAGGACGTTAAAA+AGG | - | chr4_4:8566123-8566142 | Msa0667860:intron | 30.0% | |
| !! | TGTGTTTTCTAGCAACAAAA+AGG | - | chr4_4:8566248-8566267 | Msa0667860:intron | 30.0% |
| !! | GTGTTTTCTAGCAACAAAAA+GGG | - | chr4_4:8566249-8566268 | Msa0667860:intron | 30.0% |
| !! | TGTTTTCTAGCAACAAAAAG+GGG | - | chr4_4:8566250-8566269 | Msa0667860:intron | 30.0% |
| CTAATTTCTTCCATCCATTA+TGG | + | chr4_4:8566355-8566374 | None:intergenic | 30.0% | |
| !! | CATAATGGATGGAAGAAATT+AGG | - | chr4_4:8566353-8566372 | Msa0667860:intron | 30.0% |
| TCTTTAGTACAAAAATGGCT+GGG | + | chr4_4:8566417-8566436 | None:intergenic | 30.0% | |
| AAAGAGCAAAAATGACACTT+TGG | - | chr4_4:8566432-8566451 | Msa0667860:intron | 30.0% | |
| TTTCTTTCTGTATCAATGCT+AGG | - | chr4_4:8566660-8566679 | Msa0667860:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | - | chr4_4:8566736-8566755 | Msa0667860:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr4_4:8566754-8566773 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | - | chr4_4:8566796-8566815 | Msa0667860:intron | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | + | chr4_4:8566802-8566821 | None:intergenic | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | - | chr4_4:8566851-8566870 | Msa0667860:exon | 30.0% | |
| ! | TCTAGAATCGTCTATCTATA+AGG | - | chr4_4:8567021-8567040 | Msa0667860:intron | 30.0% |
| !! | GATTTGATTTCGTTTTCGTT+TGG | - | chr4_4:8567093-8567112 | Msa0667860:intron | 30.0% |
| TATCAAACAAAACTTCAGTG+GGG | - | chr4_4:8567353-8567372 | Msa0667860:intron | 30.0% | |
| !! | TTTTTCAACATTGTTGTCGT+GGG | + | chr4_4:8567441-8567460 | None:intergenic | 30.0% |
| !! | ATTTTTCAACATTGTTGTCG+TGG | + | chr4_4:8567442-8567461 | None:intergenic | 30.0% |
| GTCGCTTGATAAAAAAACAA+GGG | + | chr4_4:8567500-8567519 | None:intergenic | 30.0% | |
| TGAATCTAACCTATCACCAT+GGG | + | chr4_4:8562589-8562608 | None:intergenic | 35.0% | |
| ATGAATCTAACCTATCACCA+TGG | + | chr4_4:8562590-8562609 | None:intergenic | 35.0% | |
| ! | GTTCAGCTTTGCAGTATTTT+TGG | - | chr4_4:8562622-8562641 | Msa0667860:three_prime_UTR | 35.0% |
| TCCTATATATTAGAGGACAG+CGG | + | chr4_4:8562720-8562739 | None:intergenic | 35.0% | |
| AGAAAAACAATTGCCAAACG+GGG | + | chr4_4:8562852-8562871 | None:intergenic | 35.0% | |
| TTCTTGTGATGTTGATGTTG+GGG | + | chr4_4:8562982-8563001 | None:intergenic | 35.0% | |
| AATGAAGGATTTGTATGGTC+TGG | - | chr4_4:8563197-8563216 | Msa0667860:intron | 35.0% | |
| ! | CTTGCTCTACTTTCTTTTCT+TGG | - | chr4_4:8563404-8563423 | Msa0667860:intron | 35.0% |
| ATTCTATTCATTACTTGGGG+AGG | - | chr4_4:8563445-8563464 | Msa0667860:intron | 35.0% | |
| TTCTATTCATTACTTGGGGA+GGG | - | chr4_4:8563446-8563465 | Msa0667860:intron | 35.0% | |
| GGATGAAAACATGCAAGTAA+TGG | + | chr4_4:8563653-8563672 | None:intergenic | 35.0% | |
| TTTAGTTGTCAATGGTCCTA+AGG | - | chr4_4:8563715-8563734 | Msa0667860:intron | 35.0% | |
| !! | AATGGTCCTAAGGTTACTTT+TGG | - | chr4_4:8563725-8563744 | Msa0667860:intron | 35.0% |
| !! | TGTCGCTTAAGTTTCTTTTG+TGG | - | chr4_4:8564171-8564190 | Msa0667860:intron | 35.0% |
| ACACTTGAATAGATGGCAAA+CGG | - | chr4_4:8564292-8564311 | Msa0667860:intron | 35.0% | |
| CCTTCTACATAGTGTTCAAA+AGG | + | chr4_4:8564415-8564434 | None:intergenic | 35.0% | |
| ! | CCTTTTGAACACTATGTAGA+AGG | - | chr4_4:8564412-8564431 | Msa0667860:intron | 35.0% |
| ! | TTTACTTGACGCAGCTTTTA+GGG | - | chr4_4:8564530-8564549 | Msa0667860:intron | 35.0% |
| ATGCTTATGTAGACTTGACT+GGG | + | chr4_4:8564608-8564627 | None:intergenic | 35.0% | |
| TAGATAGAAGATCAACACTC+AGG | + | chr4_4:8564671-8564690 | None:intergenic | 35.0% | |
| !! | AGTGTTGATCTTCTATCTAG+TGG | - | chr4_4:8564672-8564691 | Msa0667860:intron | 35.0% |
| ! | GTGTTGATCTTCTATCTAGT+GGG | - | chr4_4:8564673-8564692 | Msa0667860:intron | 35.0% |
| ! | TTTGATATTTTCAGATGGGC+GGG | + | chr4_4:8564741-8564760 | None:intergenic | 35.0% |
| ACCTCATCAATAGGAAATAG+TGG | - | chr4_4:8564845-8564864 | Msa0667860:intron | 35.0% | |
| TCCACTATTTCCTATTGATG+AGG | + | chr4_4:8564849-8564868 | None:intergenic | 35.0% | |
| TGACATTACCACAAGACAAA+AGG | + | chr4_4:8564996-8565015 | None:intergenic | 35.0% | |
| TAGTAAAAGTGGTCAGGATA+TGG | + | chr4_4:8565029-8565048 | None:intergenic | 35.0% | |
| ! | TCCTAAAGCACAACATGTTT+TGG | + | chr4_4:8565065-8565084 | None:intergenic | 35.0% |
| ! | AAAACATGTTGTGCTTTAGG+AGG | - | chr4_4:8565064-8565083 | Msa0667860:intron | 35.0% |
| !! | AAACATGTTGTGCTTTAGGA+GGG | - | chr4_4:8565065-8565084 | Msa0667860:intron | 35.0% |
| CTTTACCTATTAGGTTTGGA+GGG | + | chr4_4:8565243-8565262 | None:intergenic | 35.0% | |
| TCTTTACCTATTAGGTTTGG+AGG | + | chr4_4:8565244-8565263 | None:intergenic | 35.0% | |
| GCTTCTTTACCTATTAGGTT+TGG | + | chr4_4:8565247-8565266 | None:intergenic | 35.0% | |
| !! | CCAAACTTTTCTTTGGCTTA+AGG | + | chr4_4:8565390-8565409 | None:intergenic | 35.0% |
| CCTTAAGCCAAAGAAAAGTT+TGG | - | chr4_4:8565387-8565406 | Msa0667860:intron | 35.0% | |
| ! | GGTATTGCCAAACTTTTCTT+TGG | + | chr4_4:8565397-8565416 | None:intergenic | 35.0% |
| TGCATCTTCTTCTTCAGTTA+CGG | + | chr4_4:8565459-8565478 | None:intergenic | 35.0% | |
| !!! | TAAAGGTTTTATTGAGGGGT+TGG | + | chr4_4:8565515-8565534 | None:intergenic | 35.0% |
| !!! | CCGAGATAAAGGTTTTATTG+AGG | + | chr4_4:8565521-8565540 | None:intergenic | 35.0% |
| ! | ATCTTTTGACCTTCATGTGA+TGG | + | chr4_4:8565624-8565643 | None:intergenic | 35.0% |
| AATACAAGAGCAAAAAGGAG+CGG | - | chr4_4:8565813-8565832 | Msa0667860:intron | 35.0% | |
| ACATAATATGACCATCACCA+AGG | - | chr4_4:8565871-8565890 | Msa0667860:intron | 35.0% | |
| ! | GATGCCCATCTATTTCTTTA+TGG | + | chr4_4:8565932-8565951 | None:intergenic | 35.0% |
| TGGTTACTTGACTATGCTTA+TGG | + | chr4_4:8566018-8566037 | None:intergenic | 35.0% | |
| !! | GAATGCTTTATTTGAGAAGG+TGG | + | chr4_4:8566222-8566241 | None:intergenic | 35.0% |
| !! | AGGGAATGCTTTATTTGAGA+AGG | + | chr4_4:8566225-8566244 | None:intergenic | 35.0% |
| GTTGCTAGAAAACACAACAA+GGG | + | chr4_4:8566244-8566263 | None:intergenic | 35.0% | |
| TGTTGCTAGAAAACACAACA+AGG | + | chr4_4:8566245-8566264 | None:intergenic | 35.0% | |
| GAAGAAATTAGGGTAACTGT+TGG | - | chr4_4:8566364-8566383 | Msa0667860:intron | 35.0% | |
| CTTTAGTACAAAAATGGCTG+GGG | + | chr4_4:8566416-8566435 | None:intergenic | 35.0% | |
| CTCTTTAGTACAAAAATGGC+TGG | + | chr4_4:8566418-8566437 | None:intergenic | 35.0% | |
| GGAGAAACAAGCAAAATGAA+TGG | + | chr4_4:8566480-8566499 | None:intergenic | 35.0% | |
| AGCTAAAAAAAGGACGTGAA+TGG | + | chr4_4:8566501-8566520 | None:intergenic | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | + | chr4_4:8566724-8566743 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | + | chr4_4:8566725-8566744 | None:intergenic | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | + | chr4_4:8566864-8566883 | None:intergenic | 35.0% |
| TCTAGCTAATTTCCTTGCAA+TGG | - | chr4_4:8567377-8567396 | Msa0667860:intron | 35.0% | |
| CGTCGCTTGATAAAAAAACA+AGG | + | chr4_4:8567501-8567520 | None:intergenic | 35.0% | |
| TATATATTAGAGGACAGCGG+TGG | + | chr4_4:8562717-8562736 | None:intergenic | 40.0% | |
| ACCGCTGTCCTCTAATATAT+AGG | - | chr4_4:8562716-8562735 | Msa0667860:three_prime_UTR | 40.0% | |
| !! | CGTTTCTGAGGTTTAGAAGA+AGG | + | chr4_4:8562820-8562839 | None:intergenic | 40.0% |
| TCTTGTGATGTTGATGTTGG+GGG | + | chr4_4:8562981-8563000 | None:intergenic | 40.0% | |
| CTGCTATACTAAGCACACAA+TGG | + | chr4_4:8563138-8563157 | None:intergenic | 40.0% | |
| CACACACACTTCATGAATGA+AGG | - | chr4_4:8563182-8563201 | Msa0667860:intron | 40.0% | |
| TTTGTTGCTACAGTAGGAGA+TGG | - | chr4_4:8563242-8563261 | Msa0667860:intron | 40.0% | |
| CACAAATGTGGAGCTTACTT+GGG | - | chr4_4:8563318-8563337 | Msa0667860:intron | 40.0% | |
| CATGAGTGGAATCGGTAAAT+AGG | - | chr4_4:8563341-8563360 | Msa0667860:intron | 40.0% | |
| TCTATTCATTACTTGGGGAG+GGG | - | chr4_4:8563447-8563466 | Msa0667860:intron | 40.0% | |
| TAGGAGAGAGATAGAGACAA+AGG | - | chr4_4:8563587-8563606 | Msa0667860:intron | 40.0% | |
| ! | AAACATGCAAGTAATGGGGT+GGG | + | chr4_4:8563647-8563666 | None:intergenic | 40.0% |
| ! | AAAACATGCAAGTAATGGGG+TGG | + | chr4_4:8563648-8563667 | None:intergenic | 40.0% |
| TCTCGACCAAAAGTAACCTT+AGG | + | chr4_4:8563734-8563753 | None:intergenic | 40.0% | |
| TTGGTCGAGAAGAACATGAT+AGG | - | chr4_4:8563744-8563763 | Msa0667860:intron | 40.0% | |
| AGGCTTAAAGAACATGGATC+AGG | - | chr4_4:8563884-8563903 | Msa0667860:intron | 40.0% | |
| CTTAAAGAACATGGATCAGG+TGG | - | chr4_4:8563887-8563906 | Msa0667860:intron | 40.0% | |
| ! | GCTTAAGTTTCTTTTGTGGC+AGG | - | chr4_4:8564175-8564194 | Msa0667860:intron | 40.0% |
| CACTTGAATAGATGGCAAAC+GGG | - | chr4_4:8564293-8564312 | Msa0667860:intron | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | + | chr4_4:8564357-8564376 | None:intergenic | 40.0% | |
| AACACAACATTCATGGACCT+AGG | - | chr4_4:8564366-8564385 | Msa0667860:intron | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr4_4:8564386-8564405 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTTCCTATCACCTG+AGG | + | chr4_4:8564445-8564464 | None:intergenic | 40.0% |
| AGAACACGCTTTCTCATGTT+TGG | - | chr4_4:8564503-8564522 | Msa0667860:intron | 40.0% | |
| AAAAGCTGCGTCAAGTAAAG+TGG | + | chr4_4:8564529-8564548 | None:intergenic | 40.0% | |
| ! | CTTTACTTGACGCAGCTTTT+AGG | - | chr4_4:8564529-8564548 | Msa0667860:intron | 40.0% |
| !!! | TTTTAGGGCTGTTTGTCCTA+CGG | - | chr4_4:8564545-8564564 | Msa0667860:intron | 40.0% |
| TGCTTATGTAGACTTGACTG+GGG | + | chr4_4:8564607-8564626 | None:intergenic | 40.0% | |
| CATGCTTATGTAGACTTGAC+TGG | + | chr4_4:8564609-8564628 | None:intergenic | 40.0% | |
| ! | TTGATATTTTCAGATGGGCG+GGG | + | chr4_4:8564740-8564759 | None:intergenic | 40.0% |
| AGGATAGTACGATACTTCAC+TGG | - | chr4_4:8564887-8564906 | Msa0667860:intron | 40.0% | |
| TGCTGATCTAACCCATCAAT+CGG | - | chr4_4:8564917-8564936 | Msa0667860:intron | 40.0% | |
| ! | TTCTAGCTATCCCGATTGAT+GGG | + | chr4_4:8564931-8564950 | None:intergenic | 40.0% |
| GCCAAAACATGTTGTGCTTT+AGG | - | chr4_4:8565061-8565080 | Msa0667860:intron | 40.0% | |
| TTGAGAGACAGTAGGTTATG+TGG | + | chr4_4:8565136-8565155 | None:intergenic | 40.0% | |
| GGGTTTGTACTCAACATTAG+AGG | + | chr4_4:8565218-8565237 | None:intergenic | 40.0% | |
| !! | GGTTGGCTTCTTTACCTATT+AGG | + | chr4_4:8565252-8565271 | None:intergenic | 40.0% |
| AAGAAGCCAACCTCTATTGA+AGG | - | chr4_4:8565260-8565279 | Msa0667860:intron | 40.0% | |
| TATTGAAGGTCCCCAAAGAA+AGG | - | chr4_4:8565274-8565293 | Msa0667860:intron | 40.0% | |
| TGATAAAGAGTTGCGTGAAG+CGG | + | chr4_4:8565326-8565345 | None:intergenic | 40.0% | |
| GCATCTTCTTCTTCAGTTAC+GGG | + | chr4_4:8565458-8565477 | None:intergenic | 40.0% | |
| TGCTCATTACCATCACATGA+AGG | - | chr4_4:8565612-8565631 | Msa0667860:intron | 40.0% | |
| TTCAATTCAAGGCCCAATTC+TGG | - | chr4_4:8565660-8565679 | Msa0667860:intron | 40.0% | |
| TAGACATCATTCGGGTCTTT+GGG | + | chr4_4:8565686-8565705 | None:intergenic | 40.0% | |
| TTAGACATCATTCGGGTCTT+TGG | + | chr4_4:8565687-8565706 | None:intergenic | 40.0% | |
| !! | TTGATGATGGGACTGTTGTA+GGG | + | chr4_4:8565734-8565753 | None:intergenic | 40.0% |
| ! | ATGCTTGGTACCTTGATGAT+GGG | + | chr4_4:8565746-8565765 | None:intergenic | 40.0% |
| GGTGCAATACAAGAGCAAAA+AGG | - | chr4_4:8565808-8565827 | Msa0667860:intron | 40.0% | |
| GGTCATATTATGTCTGCTAC+TGG | + | chr4_4:8565864-8565883 | None:intergenic | 40.0% | |
| GGTTGAGTTTCTTTATGGAC+AGG | + | chr4_4:8565910-8565929 | None:intergenic | 40.0% | |
| TTTCAACTTGGTAGACAGGT+CGG | + | chr4_4:8565979-8565998 | None:intergenic | 40.0% | |
| ATGCTTTCAACTTGGTAGAC+AGG | + | chr4_4:8565983-8566002 | None:intergenic | 40.0% | |
| TTAAACTTGCGACATGGAGA+TGG | + | chr4_4:8566038-8566057 | None:intergenic | 40.0% | |
| ! | TTTCTAGCAACAAAAAGGGG+TGG | - | chr4_4:8566253-8566272 | Msa0667860:intron | 40.0% |
| AAAAAGGGGTGGTTTAACGA+GGG | - | chr4_4:8566264-8566283 | Msa0667860:intron | 40.0% | |
| AGGGAAAGAAACAGTGAAGT+GGG | - | chr4_4:8566283-8566302 | Msa0667860:intron | 40.0% | |
| ! | TAGCTTTACGCAACTTGTGA+AGG | - | chr4_4:8566390-8566409 | Msa0667860:intron | 40.0% |
| GGAGCAAAATGTCTGTTTGA+GGG | + | chr4_4:8566459-8566478 | None:intergenic | 40.0% | |
| TGGAGCAAAATGTCTGTTTG+AGG | + | chr4_4:8566460-8566479 | None:intergenic | 40.0% | |
| ATGAATGTAGAGGAGCTGAA+AGG | + | chr4_4:8566554-8566573 | None:intergenic | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | - | chr4_4:8566706-8566725 | Msa0667860:intron | 40.0% |
| GATGAAGCAGTTGCTTACAA+AGG | - | chr4_4:8567314-8567333 | Msa0667860:intron | 40.0% | |
| ! | TAGAGATCGCATTGTTGGTT+TGG | - | chr4_4:8567403-8567422 | Msa0667860:intron | 40.0% |
| TGCAAGATTCCCATGGTGAT+AGG | - | chr4_4:8562577-8562596 | Msa0667860:three_prime_UTR | 45.0% | |
| TTTCTAATCGTCTCCCTCCA+TGG | - | chr4_4:8562794-8562813 | Msa0667860:three_prime_UTR | 45.0% | |
| GTTTAGAAGAAGGCCATGGA+GGG | + | chr4_4:8562810-8562829 | None:intergenic | 45.0% | |
| TGAGGTTTAGAAGAAGGCCA+TGG | + | chr4_4:8562814-8562833 | None:intergenic | 45.0% | |
| GGGTTTAGTGAACGTTTCTG+AGG | + | chr4_4:8562832-8562851 | None:intergenic | 45.0% | |
| AACGTTCACTAAACCCCGTT+TGG | - | chr4_4:8562836-8562855 | Msa0667860:three_prime_UTR | 45.0% | |
| CCAAGTAAGCTCCACATTTG+TGG | + | chr4_4:8563320-8563339 | None:intergenic | 45.0% | |
| CCACAAATGTGGAGCTTACT+TGG | - | chr4_4:8563317-8563336 | Msa0667860:intron | 45.0% | |
| TACTTGGGCATGAGTGGAAT+CGG | - | chr4_4:8563333-8563352 | Msa0667860:intron | 45.0% | |
| !! | TCTTTGGCTTCGGTGTCTTT+CGG | + | chr4_4:8563615-8563634 | None:intergenic | 45.0% |
| ! | AACATGCAAGTAATGGGGTG+GGG | + | chr4_4:8563646-8563665 | None:intergenic | 45.0% |
| AAAGAACATGGATCAGGTGG+TGG | - | chr4_4:8563890-8563909 | Msa0667860:intron | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | + | chr4_4:8564362-8564381 | None:intergenic | 45.0% | |
| CCTCGTGAACACAACATTCA+TGG | - | chr4_4:8564359-8564378 | Msa0667860:intron | 45.0% | |
| TGTAGAAGGTCAACAACCTC+AGG | - | chr4_4:8564426-8564445 | Msa0667860:intron | 45.0% | |
| GCTGTTTGTCCTACGGTAAA+AGG | - | chr4_4:8564552-8564571 | Msa0667860:intron | 45.0% | |
| CCACTAGTGGGATTAAGTGT+CGG | + | chr4_4:8564579-8564598 | None:intergenic | 45.0% | |
| !! | ATGGTGTACAGATGGGTTGA+TGG | + | chr4_4:8564636-8564655 | None:intergenic | 45.0% |
| GGACGTTATGGTGTACAGAT+GGG | + | chr4_4:8564643-8564662 | None:intergenic | 45.0% | |
| ! | TTCTATCTAGTGGGTCAGTC+AGG | - | chr4_4:8564682-8564701 | Msa0667860:intron | 45.0% |
| GTTCACTGTAAGGAACTTCC+CGG | + | chr4_4:8564776-8564795 | None:intergenic | 45.0% | |
| GGGAAGTTCCTTACAGTGAA+CGG | - | chr4_4:8564775-8564794 | Msa0667860:intron | 45.0% | |
| GCTGATCTAACCCATCAATC+GGG | - | chr4_4:8564918-8564937 | Msa0667860:intron | 45.0% | |
| ! | CTTCTAGCTATCCCGATTGA+TGG | + | chr4_4:8564932-8564951 | None:intergenic | 45.0% |
| TTTGCAAGCAACACATGCTC+AGG | + | chr4_4:8564960-8564979 | None:intergenic | 45.0% | |
| AGACAGTAGGTTATGTGGCA+TGG | + | chr4_4:8565131-8565150 | None:intergenic | 45.0% | |
| ! | GTACGCTTTTGTGGCTTCTA+GGG | + | chr4_4:8565188-8565207 | None:intergenic | 45.0% |
| CCTATTAGGTTTGGAGGGTT+GGG | + | chr4_4:8565238-8565257 | None:intergenic | 45.0% | |
| ACCTATTAGGTTTGGAGGGT+TGG | + | chr4_4:8565239-8565258 | None:intergenic | 45.0% | |
| ! | TCTTTGGGGACCTTCAATAG+AGG | + | chr4_4:8565273-8565292 | None:intergenic | 45.0% |
| TTGGTGGAGGTCCTTTCTTT+GGG | + | chr4_4:8565288-8565307 | None:intergenic | 45.0% | |
| ! | GATGTGTCAACCGATTCACA+TGG | + | chr4_4:8565368-8565387 | None:intergenic | 45.0% |
| CTTCTACTTCGATCGTGCAT+GGG | + | chr4_4:8565418-8565437 | None:intergenic | 45.0% | |
| TCTTCTACTTCGATCGTGCA+TGG | + | chr4_4:8565419-8565438 | None:intergenic | 45.0% | |
| AGTAGAAGAAGCTCACTCTG+AGG | - | chr4_4:8565430-8565449 | Msa0667860:intron | 45.0% | |
| ATTGGGGTGAAATTGCTCAG+AGG | + | chr4_4:8565553-8565572 | None:intergenic | 45.0% | |
| GAGCAATTTCACCCCAATGT+CGG | - | chr4_4:8565555-8565574 | Msa0667860:intron | 45.0% | |
| ! | TGATGGTAATGAGCATCGTG+GGG | + | chr4_4:8565607-8565626 | None:intergenic | 45.0% |
| ! | GTGATGGTAATGAGCATCGT+GGG | + | chr4_4:8565608-8565627 | None:intergenic | 45.0% |
| ! | TGTGATGGTAATGAGCATCG+TGG | + | chr4_4:8565609-8565628 | None:intergenic | 45.0% |
| !! | TGATGATGGGACTGTTGTAG+GGG | + | chr4_4:8565733-8565752 | None:intergenic | 45.0% |
| !! | CTTGATGATGGGACTGTTGT+AGG | + | chr4_4:8565735-8565754 | None:intergenic | 45.0% |
| CTACAACAGTCCCATCATCA+AGG | - | chr4_4:8565733-8565752 | Msa0667860:intron | 45.0% | |
| CATGCTTGGTACCTTGATGA+TGG | + | chr4_4:8565747-8565766 | None:intergenic | 45.0% | |
| GCAAGCTTCTTCTTCATGCT+TGG | + | chr4_4:8565761-8565780 | None:intergenic | 45.0% | |
| CAAAAAGGAGCGGTCCTAAT+GGG | - | chr4_4:8565823-8565842 | Msa0667860:intron | 45.0% | |
| GCGAGATTATACCTTGGTGA+TGG | + | chr4_4:8565885-8565904 | None:intergenic | 45.0% | |
| CAAAAAGGGGTGGTTTAACG+AGG | - | chr4_4:8566263-8566282 | Msa0667860:intron | 45.0% | |
| GAGGGAAAGAAACAGTGAAG+TGG | - | chr4_4:8566282-8566301 | Msa0667860:intron | 45.0% | |
| GGGAAAGAAACAGTGAAGTG+GGG | - | chr4_4:8566284-8566303 | Msa0667860:intron | 45.0% | |
| GGAAAGAAACAGTGAAGTGG+GGG | - | chr4_4:8566285-8566304 | Msa0667860:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr4_4:8566721-8566740 | None:intergenic | 45.0% | |
| GAAGCAGTTGCTTACAAAGG+CGG | - | chr4_4:8567317-8567336 | Msa0667860:intron | 45.0% | |
| CGATCTCTACATCCATTGCA+AGG | + | chr4_4:8567392-8567411 | None:intergenic | 45.0% | |
| GGATGTAGAGATCGCATTGT+TGG | - | chr4_4:8567398-8567417 | Msa0667860:intron | 45.0% | |
| !!! | ATCTAAATTTTTTTTTTTAA+AGG | - | chr4_4:8567285-8567304 | Msa0667860:intron | 5.0% |
| GGTTTAGAAGAAGGCCATGG+AGG | + | chr4_4:8562811-8562830 | None:intergenic | 50.0% | |
| TGTGATGTTGATGTTGGGGG+TGG | + | chr4_4:8562978-8562997 | None:intergenic | 50.0% | |
| GGAGAACACAATGACGTTCG+AGG | - | chr4_4:8563282-8563301 | Msa0667860:intron | 50.0% | |
| ATGACGTTCGAGGTGTGCTA+TGG | - | chr4_4:8563292-8563311 | Msa0667860:intron | 50.0% | |
| GTGCTATGGCTCCACAAATG+TGG | - | chr4_4:8563306-8563325 | Msa0667860:intron | 50.0% | |
| GGCTTCGGTGACTTTGTGTT+GGG | - | chr4_4:8563468-8563487 | Msa0667860:intron | 50.0% | |
| GGTCAACAACCTCAGGTGAT+AGG | - | chr4_4:8564433-8564452 | Msa0667860:intron | 50.0% | |
| !! | AGTGTCGGACCTTTTACCGT+AGG | + | chr4_4:8564564-8564583 | None:intergenic | 50.0% |
| CCGACACTTAATCCCACTAG+TGG | - | chr4_4:8564576-8564595 | Msa0667860:intron | 50.0% | |
| ACTGGGGTTTCACCACTAGT+GGG | + | chr4_4:8564591-8564610 | None:intergenic | 50.0% | |
| CGGACGTTATGGTGTACAGA+TGG | + | chr4_4:8564644-8564663 | None:intergenic | 50.0% | |
| AAGATCAACACTCAGGCCTG+CGG | + | chr4_4:8564664-8564683 | None:intergenic | 50.0% | |
| GGGGATATCAGTGAAGAAGG+AGG | + | chr4_4:8564721-8564740 | None:intergenic | 50.0% | |
| !! | CTTGCTCCCCAAAAGTATCC+AGG | - | chr4_4:8564798-8564817 | Msa0667860:intron | 50.0% |
| ! | AGGCGTGCCTGGATACTTTT+GGG | + | chr4_4:8564808-8564827 | None:intergenic | 50.0% |
| ! | AAGGCGTGCCTGGATACTTT+TGG | + | chr4_4:8564809-8564828 | None:intergenic | 50.0% |
| ACAGGGCACACCTCATCAAT+AGG | - | chr4_4:8564836-8564855 | Msa0667860:intron | 50.0% | |
| ! | CGTACGCTTTTGTGGCTTCT+AGG | + | chr4_4:8565189-8565208 | None:intergenic | 50.0% |
| ! | GGCTTCTTCGTACGCTTTTG+TGG | + | chr4_4:8565197-8565216 | None:intergenic | 50.0% |
| CCCAACCCTCCAAACCTAAT+AGG | - | chr4_4:8565235-8565254 | Msa0667860:intron | 50.0% | |
| TGGGGACCTTCAATAGAGGT+TGG | + | chr4_4:8565269-8565288 | None:intergenic | 50.0% | |
| TGGTGGAGGTCCTTTCTTTG+GGG | + | chr4_4:8565287-8565306 | None:intergenic | 50.0% | |
| ! | GTTGGTGGAGGTCCTTTCTT+TGG | + | chr4_4:8565289-8565308 | None:intergenic | 50.0% |
| GTTGAGGACATTGTGGTTGG+TGG | + | chr4_4:8565304-8565323 | None:intergenic | 50.0% | |
| TGAAGCGGTTGAGGACATTG+TGG | + | chr4_4:8565311-8565330 | None:intergenic | 50.0% | |
| ! | TCAACCGATTCACATGGAGG+AGG | + | chr4_4:8565362-8565381 | None:intergenic | 50.0% |
| ! | GTGTCAACCGATTCACATGG+AGG | + | chr4_4:8565365-8565384 | None:intergenic | 50.0% |
| GGAGCTGTTAGCCGAGATAA+AGG | + | chr4_4:8565532-8565551 | None:intergenic | 50.0% | |
| ! | ATGGTAATGAGCATCGTGGG+GGG | + | chr4_4:8565605-8565624 | None:intergenic | 50.0% |
| ! | GATGGTAATGAGCATCGTGG+GGG | + | chr4_4:8565606-8565625 | None:intergenic | 50.0% |
| TGTTGTAGGGGATTCAGAGG+AGG | + | chr4_4:8565721-8565740 | None:intergenic | 50.0% | |
| GACTGTTGTAGGGGATTCAG+AGG | + | chr4_4:8565724-8565743 | None:intergenic | 50.0% | |
| GCAAAAAGGAGCGGTCCTAA+TGG | - | chr4_4:8565822-8565841 | Msa0667860:intron | 50.0% | |
| TCTGCTACTGGAGTGCAACA+AGG | + | chr4_4:8565852-8565871 | None:intergenic | 50.0% | |
| CAGGCAGCGAGATTATACCT+TGG | + | chr4_4:8565891-8565910 | None:intergenic | 50.0% | |
| AAGAAACAGTGAAGTGGGGG+AGG | - | chr4_4:8566288-8566307 | Msa0667860:intron | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | - | chr4_4:8566709-8566728 | Msa0667860:intron | 50.0% | |
| ATTAGAGGACAGCGGTGGTG+TGG | + | chr4_4:8562712-8562731 | None:intergenic | 55.0% | |
| TACAGTAGGAGATGGTGCGC+AGG | - | chr4_4:8563250-8563269 | Msa0667860:intron | 55.0% | |
| CGTCATTGTGTTCTCCGCCA+AGG | + | chr4_4:8563278-8563297 | None:intergenic | 55.0% | |
| GGAGCTTACTTGGGCATGAG+TGG | - | chr4_4:8563327-8563346 | Msa0667860:intron | 55.0% | |
| CATTACTTGGGGAGGGGCTT+CGG | - | chr4_4:8563453-8563472 | Msa0667860:intron | 55.0% | |
| GGGCTTCGGTGACTTTGTGT+TGG | - | chr4_4:8563467-8563486 | Msa0667860:intron | 55.0% | |
| ! | GGCTTCAGCGTCTTTGGCTT+CGG | + | chr4_4:8563625-8563644 | None:intergenic | 55.0% |
| ! | GCTGCGTCGCTAGACCTTTT+TGG | - | chr4_4:8564322-8564341 | Msa0667860:intron | 55.0% |
| GACTGGGGTTTCACCACTAG+TGG | + | chr4_4:8564592-8564611 | None:intergenic | 55.0% | |
| CTGTACACCATAACGTCCGC+AGG | - | chr4_4:8564645-8564664 | Msa0667860:intron | 55.0% | |
| GGCGGGGATATCAGTGAAGA+AGG | + | chr4_4:8564724-8564743 | None:intergenic | 55.0% | |
| GGAGCAAGCCGTTCACTGTA+AGG | + | chr4_4:8564786-8564805 | None:intergenic | 55.0% | |
| ! | GGCGTGCCTGGATACTTTTG+GGG | + | chr4_4:8564807-8564826 | None:intergenic | 55.0% |
| TGTTTGTCGTAAGGCGTGCC+TGG | + | chr4_4:8564819-8564838 | None:intergenic | 55.0% | |
| AGGCACGCCTTACGACAAAC+AGG | - | chr4_4:8564818-8564837 | Msa0667860:intron | 55.0% | |
| GGCACGCCTTACGACAAACA+GGG | - | chr4_4:8564819-8564838 | Msa0667860:intron | 55.0% | |
| GGTGTGCCCTGTTTGTCGTA+AGG | + | chr4_4:8564828-8564847 | None:intergenic | 55.0% | |
| !! | GGCTTCTAGGGCACAGTCTT+GGG | + | chr4_4:8565176-8565195 | None:intergenic | 55.0% |
| !! | TGGCTTCTAGGGCACAGTCT+TGG | + | chr4_4:8565177-8565196 | None:intergenic | 55.0% |
| !! | GAGGACATTGTGGTTGGTGG+AGG | + | chr4_4:8565301-8565320 | None:intergenic | 55.0% |
| GCGGTTGAGGACATTGTGGT+TGG | + | chr4_4:8565307-8565326 | None:intergenic | 55.0% | |
| AGAGTTGCGTGAAGCGGTTG+AGG | + | chr4_4:8565320-8565339 | None:intergenic | 55.0% | |
| ! | ACCGATTCACATGGAGGAGG+CGG | + | chr4_4:8565359-8565378 | None:intergenic | 55.0% |
| ATGCATTAACTCAGCCGCCC+TGG | - | chr4_4:8565474-8565493 | Msa0667860:intron | 55.0% | |
| CATGAAGAGAGCTTCCAGGG+CGG | + | chr4_4:8565491-8565510 | None:intergenic | 55.0% | |
| GGCCATGAAGAGAGCTTCCA+GGG | + | chr4_4:8565494-8565513 | None:intergenic | 55.0% | |
| TGGCCATGAAGAGAGCTTCC+AGG | + | chr4_4:8565495-8565514 | None:intergenic | 55.0% | |
| AGATTGGGAGGCCGACATTG+GGG | + | chr4_4:8565569-8565588 | None:intergenic | 55.0% | |
| GAGATTGGGAGGCCGACATT+GGG | + | chr4_4:8565570-8565589 | None:intergenic | 55.0% | |
| GGTTGTTCCCTGCGGAGATT+GGG | + | chr4_4:8565584-8565603 | None:intergenic | 55.0% | |
| CGGGTCTTTGGGCCAGAATT+GGG | + | chr4_4:8565675-8565694 | None:intergenic | 55.0% | |
| TCGGGTCTTTGGGCCAGAAT+TGG | + | chr4_4:8565676-8565695 | None:intergenic | 55.0% | |
| TGTAGGGGATTCAGAGGAGG+TGG | + | chr4_4:8565718-8565737 | None:intergenic | 55.0% | |
| GTGCAACAAGGCGACCCATT+AGG | + | chr4_4:8565840-8565859 | None:intergenic | 55.0% | |
| GAGATGGTGCGCAGGAACCT+TGG | - | chr4_4:8563258-8563277 | Msa0667860:intron | 60.0% | |
| ATGGTGCGCAGGAACCTTGG+CGG | - | chr4_4:8563261-8563280 | Msa0667860:intron | 60.0% | |
| ACTCAGGCCTGCGGACGTTA+TGG | + | chr4_4:8564655-8564674 | None:intergenic | 60.0% | |
| GCCGCCTCCTCCATGTGAAT+CGG | - | chr4_4:8565355-8565374 | Msa0667860:intron | 60.0% | |
| CGCCCTGGAAGCTCTCTTCA+TGG | - | chr4_4:8565489-8565508 | Msa0667860:intron | 60.0% | |
| GGAGATTGGGAGGCCGACAT+TGG | + | chr4_4:8565571-8565590 | None:intergenic | 60.0% | |
| TGTTCCCTGCGGAGATTGGG+AGG | + | chr4_4:8565581-8565600 | None:intergenic | 60.0% | |
| GGGTTGTTCCCTGCGGAGAT+TGG | + | chr4_4:8565585-8565604 | None:intergenic | 60.0% | |
| GGGTGGGGCTTCAGCGTCTT+TGG | + | chr4_4:8563631-8563650 | None:intergenic | 65.0% | |
| TCGGCCTCCCAATCTCCGCA+GGG | - | chr4_4:8565574-8565593 | Msa0667860:intron | 65.0% | |
| TCGTGGGGGGTTGTTCCCTG+CGG | + | chr4_4:8565592-8565611 | None:intergenic | 65.0% | |
| CAGGTCGGCACTGCTACGTG+AGG | + | chr4_4:8565964-8565983 | None:intergenic | 65.0% | |
| GTCGGCCTCCCAATCTCCGC+AGG | - | chr4_4:8565573-8565592 | Msa0667860:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 8562552 | 8567646 | 8562552 | ID=Msa0667860;Name=Msa0667860 |
| chr4_4 | mRNA | 8562552 | 8567646 | 8562552 | ID=Msa0667860-mRNA-1;Parent=Msa0667860;Name=Msa0667860-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.75|0.75|0.33|0.25|4|396|45 |
| chr4_4 | exon | 8562552 | 8562891 | 8562552 | ID=Msa0667860-mRNA-1:exon:2742;Parent=Msa0667860-mRNA-1 |
| chr4_4 | exon | 8563601 | 8563639 | 8563601 | ID=Msa0667860-mRNA-1:exon:2741;Parent=Msa0667860-mRNA-1 |
| chr4_4 | exon | 8566836 | 8566943 | 8566836 | ID=Msa0667860-mRNA-1:exon:2740;Parent=Msa0667860-mRNA-1 |
| chr4_4 | exon | 8567600 | 8567646 | 8567600 | ID=Msa0667860-mRNA-1:exon:2739;Parent=Msa0667860-mRNA-1 |
| chr4_4 | CDS | 8567600 | 8567646 | 8567600 | ID=Msa0667860-mRNA-1:cds;Parent=Msa0667860-mRNA-1 |
| chr4_4 | CDS | 8566853 | 8566943 | 8566853 | ID=Msa0667860-mRNA-1:cds;Parent=Msa0667860-mRNA-1 |
| chr4_4 | three_prime_UTR | 8566836 | 8566852 | 8566836 | ID=Msa0667860-mRNA-1:three_prime_utr;Parent=Msa0667860-mRNA-1 |
| chr4_4 | three_prime_UTR | 8563601 | 8563639 | 8563601 | ID=Msa0667860-mRNA-1:three_prime_utr;Parent=Msa0667860-mRNA-1 |
| chr4_4 | three_prime_UTR | 8562552 | 8562891 | 8562552 | ID=Msa0667860-mRNA-1:three_prime_utr;Parent=Msa0667860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
