AlfalfaGEDB | Msa0668100

M. sativa cultivar zhongmu-4 / Msa0668100

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0668100	XP_039689611.1	68.008	1019	202	12	1	913	1	1001	0.0	1270

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0668100	sp\|Q9C6A8\|RLP15_ARATH	39.072	970	495	17	11	905	11	959	0.0	607

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0668100	G7JP58	71.949	934	216	12	1	902	1	920	0.0	1257

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0616560	Msa0668100	-0.801768	7.705227e-49	-8.615850e-47
Msa0668100	Msa0818030	0.803001	4.293254e-49	-8.615850e-47
Msa0668100	Msa0886660	0.816268	6.036726e-52	-8.615850e-47
Msa0668100	Msa1139240	0.805513	1.287498e-49	-8.615850e-47
Msa0668100	Msa1424000	0.939612	9.482631e-100	-8.615850e-47
Msa0668100	Msa1424010	0.810002	1.431148e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0668100	MtrunA17_Chr4g0006941	67.674	993	227	15	1	913	13	991	0.0	1227
Msa0668100	MtrunA17_Chr4g0006421	63.010	1030	232	16	1	899	1	1012	0.0	1144
Msa0668100	MtrunA17_Chr4g0006861	69.916	831	199	10	111	913	212	1019	0.0	1075
Msa0668100	MtrunA17_Chr4g0006861	36.407	846	412	19	1	795	1	771	3.87e-113	371
Msa0668100	MtrunA17_Chr4g0006901	76.495	719	152	7	198	913	1	705	0.0	1058
Msa0668100	MtrunA17_Chr4g0006901	28.814	472	295	14	109	566	161	605	2.09e-27	119
Msa0668100	MtrunA17_Chr4g0006961	75.035	717	164	6	198	913	5	707	0.0	1043
Msa0668100	MtrunA17_Chr4g0006961	30.282	568	333	14	129	643	7	564	1.63e-43	169
Msa0668100	MtrunA17_Chr4g0006961	27.075	506	278	13	111	589	165	606	1.26e-27	119
Msa0668100	MtrunA17_Chr4g0006961	28.267	375	241	11	101	469	252	604	1.71e-24	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0668100	AT1G74190.1	39.072	970	495	17	11	905	11	959	0.0	607
Msa0668100	AT1G58190.1	40.021	947	478	19	13	903	14	926	0.0	598
Msa0668100	AT1G58190.3	39.535	946	471	22	22	906	32	937	0.0	581
Msa0668100	AT2G25470.3	38.315	997	488	23	1	902	5	969	0.0	576
Msa0668100	AT3G53240.2	39.725	944	482	21	23	905	2	919	0.0	575
Msa0668100	AT1G74170.1	39.748	873	430	16	102	905	114	959	0.0	551
Msa0668100	AT3G53240.1	39.468	902	463	18	65	905	4	883	0.0	547
Msa0668100	AT3G53240.3	39.468	902	463	18	65	905	4	883	0.0	547
Msa0668100	AT1G74170.2	39.748	873	430	16	102	905	182	1027	1.41e-180	551
Msa0668100	AT2G25470.1	37.640	983	461	23	15	902	1	926	1.87e-179	543

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Find 201 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTGTCAAGGTTGGAT+TGG	0.456870	4_4:-8965282	Msa0668100:CDS
AACTACAACTTCTAGATTTG+AGG	0.432468	4_4:-8961082	Msa0668100:CDS
AACTTCAAATACTTAACACT+AGG	0.652423	4_4:+8961656	None:intergenic
AAGATCCAACATTTGAAGAC+TGG	0.513206	4_4:+8961223	None:intergenic
AAGTTTAATATCTAATCGAA+TGG	0.559774	4_4:-8962639	Msa0668100:CDS
AATACGTATTACTATCAATA+AGG	0.282518	4_4:+8965847	None:intergenic
AATATATAGAACTTGAAGAT+TGG	0.440650	4_4:+8961967	None:intergenic
AATTAAGTCATTGCTCGCTG+TGG	0.646770	4_4:+8961520	None:intergenic
AATTGTTCCATCCTAATAAA+AGG	0.283466	4_4:+8961000	None:intergenic
AATTGTTGTTGGACAAGTCG+AGG	0.600934	4_4:+8965298	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATCAATAAGGATTTGAG+TGG	+	chr4_4:8960109-8960128	None:intergenic	30.0%
ATGAGGTGATTATAGGAATT+CGG	-	chr4_4:8960267-8960286	Msa0668100:CDS	30.0%
ATCTTGTCACAACAAGATTA+TGG	-	chr4_4:8960450-8960469	Msa0668100:CDS	30.0%
ATAACAAAGAATTGGGTTCA+TGG	-	chr4_4:8960484-8960503	Msa0668100:CDS	30.0%
TAACAAAGAATTGGGTTCAT+GGG	-	chr4_4:8960485-8960504	Msa0668100:CDS	30.0%
TACTGATAGTAAGTTATCGA+GGG	+	chr4_4:8960592-8960611	None:intergenic	30.0%
GAAACATTTAACATCTCAAG+GGG	+	chr4_4:8960615-8960634	None:intergenic	30.0%
GTGAAACATTTAACATCTCA+AGG	+	chr4_4:8960617-8960636	None:intergenic	30.0%
TATATATATAAGGACCAACG+TGG	+	chr4_4:8960718-8960737	None:intergenic	30.0%
CAAATCTCAATTAAGAGAGA+TGG	-	chr4_4:8960934-8960953	Msa0668100:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	8959960	8966025	8959960	ID=Msa0668100;Name=Msa0668100
chr4_4	mRNA	8959960	8966025	8959960	ID=Msa0668100-mRNA-1;Parent=Msa0668100;Name=Msa0668100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=367\|1\|1\|1\|1\|1\|4\|120\|913
chr4_4	exon	8959960	8962223	8959960	ID=Msa0668100-mRNA-1:exon:2834;Parent=Msa0668100-mRNA-1
chr4_4	exon	8962624	8962692	8962624	ID=Msa0668100-mRNA-1:exon:2833;Parent=Msa0668100-mRNA-1
chr4_4	exon	8964297	8964440	8964297	ID=Msa0668100-mRNA-1:exon:2832;Parent=Msa0668100-mRNA-1
chr4_4	exon	8965274	8966025	8965274	ID=Msa0668100-mRNA-1:exon:2831;Parent=Msa0668100-mRNA-1
chr4_4	five_prime_UTR	8965659	8966025	8965659	ID=Msa0668100-mRNA-1:five_prime_utr;Parent=Msa0668100-mRNA-1
chr4_4	CDS	8965274	8965658	8965274	ID=Msa0668100-mRNA-1:cds;Parent=Msa0668100-mRNA-1
chr4_4	CDS	8964297	8964440	8964297	ID=Msa0668100-mRNA-1:cds;Parent=Msa0668100-mRNA-1
chr4_4	CDS	8962624	8962692	8962624	ID=Msa0668100-mRNA-1:cds;Parent=Msa0668100-mRNA-1
chr4_4	CDS	8960080	8962223	8960080	ID=Msa0668100-mRNA-1:cds;Parent=Msa0668100-mRNA-1
chr4_4	three_prime_UTR	8959960	8960079	8959960	ID=Msa0668100-mRNA-1:three_prime_utr;Parent=Msa0668100-mRNA-1

Gene Sequence

>Msa0668100

ATGAAGTTGGGTTTGATAATTAATTCCATTTTATATTTTTTGATTTTAATGTTAATGCAAAATCAAGGATGTCATGGTTGCTTAGAGAAGGAGAGAATAGGACTGTTGGAGATCAAGCACTACATCTTGTCACAACAAGATTATGGAGATCCTTATAATAACAAAGAATTGGGTTCATGGGTTGATGATAGAGATAGCAATTGTTGTTCTTGGAACAGAGTCACGTGCTCTAACTTCTCTTCTGGTCACATAACTGAATTATCCCTCGATAACTTACTATCAGTACCCCTTGAGATGTTAAATGTTTCACTGTTCCGTCCATTTGAAGAGTTACGCCTCCTCGACTTGTCCAACAACAATTGTCAAGGTTGGATTGGCAACGAAGGTTTTCCAAGACTTACAAAGCTGGAGACATTAGACCTTTCATGGAACAATCTAAATAGTAGCATCTTGCCAAGTTTGAATGGATTGACTGCTCTAACAACTTTGAAGTTGGGTTATAATTTGATGGAAAACTCCTCTGCTCAAGATGTTCAACATTTGAGAAACTTGAAAATGTTAAGTTTAATATCTAATCGAATGGATGGCTCAATTGAAGGACTATGCAAATTGCAGAATTTGGTAGAACTGGATATCAGCAGTAACACGTTTGGTGGTAAACTTCCTGAGTGTTTAAGCAACTTAACAAACCTCAGAGTTCTTGACCTTAGCCATAATCTGTTCAGTGGAAATTTTCCATCTTTCATTAGCAATCTCACATCCCTGAAATACTTATCCTTCTATGGAAATTACATGCAAGGATCATTTTCCTTTAGCACTTTAGCTAATCATTCCAATCTTCAAGTTCTATATATTTCATCAGAAAACAATCAAGTACAGATTCAAACTGAAAACATAAAGTGGTTTCCTAAATTTCAATTGAAGTCACTCGTTCTTAGAAATTGCAACATAAACAAGGACAAAGGAAGTGTCATTCCTACTTTTCTTTCATATCAATATAATTTGATGGTTGTGGGCCTCTCCAGCAACAAAATAGTTGGATCATTCCCAAGTTGGTTGATGCATAATGATGACATACAATATTTGGATATATCAAACAACAATTTTAGTGGTTTGCTTCCAGAAGATATTGGTATATTCCTTCCTAGTGTTAAGTATTTGAAGTTATCATGGAATAGCTTTGAAGGAAATATACCTTCATCAATTGGTAAGATGAAAGAACTTGAGTACATGGGCTTCTCTCATAATCATTTCTCAGGTGAGTTACCTGAACAATTGGCCACAGCGAGCAATGACTTAATTTACTTGGAGCTCTCCAACAACTTTCTACGTGGGAATATTCCTAAATTTTGTAATTCAGTGAATATGGAAGTTTTATCTCTCAGTAATAACAACTTTAGTGGAACCCTTGAAGATGTATTTGGAAACAATACAGAATTATCATGGCTATCCATATCCAATAACTCAATCACAGGCAAAATTCCTAGTTCAATTGGGATGTTTTCTGAATTGTCTGTCCTTCTTATGTCTGAAAATCTATTAGAAGGTGAGATCCCTATTGAGATTTTCAACATGTCCAGTCTTCAAATGTTGGATCTTTCTCAAAACAAGTTAATTGGATCAATCCCAAAGTTCACAACTGGATCTCTAAGGTTATTGTATTTGCAACAGAATAATCTCTCTGGATCTATACCATCTGAACTCTCTGAAGCCTCACAACTACAACTTCTAGATTTGAGGGAGAACAAATTTTCAGGTAAAATTCCCAACTGGATGGACAAGCTCTCGGAGTTGAGGGTCCTTTTATTAGGATGGAACAATTTTGAAGGAGAAATTCCAAATCAGTTGTGTCAGTTAAAAAAGATTGACATAATGGACCTATCAAGGAACAAGCTCAATGCTTCAATACCATCTTGCTTCCAAAATATGCCATTTGGAATGAGACAATATGGTGATGAAGATTATGAAGACGGTTCTATTTTTGAATTCTCAATTCCCTTACATTTCACAGAGCAAATTATTCCAGATGTGAATTATTTCTTCAATGCTAGTTTGCCCATTGGTTCTCAATTGGTTTATGATGAAAGTTCACCGAGTGAAGATCAAGAATTCGAAGTGCAGTTCAGAACAAAGCACAATGAATACTTTTACAAAGGTGATATCCTAGACATCATGAGTGGATTGGATTTATCATGCAATAAACTAACAGGTACCATCCCTTCTCAACTTGGAGACATGCAAAAAGTTCAAGTCTTGAACCTATCACATAATCACTTGACAGGTCCTATTCCAATCACTTTTTCCAATCTTACCCAAATAGAGAGCCTTGATTTATCATACAATAACTTAAGTGGTAAGATACCTAATGAACTAACCAAGTTGACCTCTTTAGAAATCTTCAATGTGTCATACAACAACCTTTCTGGAACACCACCTAGTACAAGACAGTTTGCAACCTTCGTTGAGGACAGCTACAGAGGTAATCCTGGTCTTTGTGGACCACTCCTCAATCGAAAGTGTGAACGTGTCGAGTCTTCACCTTCATCACAATCCAATGACAATGGAGAAAAGGAAACTGTTGTGGACATGATAACATTTTATTGGAGTTTCACAGCATCTTACATAACAATACTATTGGCCTTCATCACAGTGTTGTGCATCAATGCACGTTGGCGTATGGCCTGGTTTTATTACATAAGTAAGTTTACACGTAGATTTTTTCCAACTTTTCCATTGTATTGA

Protein sequence

>Msa0668100

MKLGLIINSILYFLILMLMQNQGCHGCLEKERIGLLEIKHYILSQQDYGDPYNNKELGSWVDDRDSNCCSWNRVTCSNFSSGHITELSLDNLLSVPLEMLNVSLFRPFEELRLLDLSNNNCQGWIGNEGFPRLTKLETLDLSWNNLNSSILPSLNGLTALTTLKLGYNLMENSSAQDVQHLRNLKMLSLISNRMDGSIEGLCKLQNLVELDISSNTFGGKLPECLSNLTNLRVLDLSHNLFSGNFPSFISNLTSLKYLSFYGNYMQGSFSFSTLANHSNLQVLYISSENNQVQIQTENIKWFPKFQLKSLVLRNCNINKDKGSVIPTFLSYQYNLMVVGLSSNKIVGSFPSWLMHNDDIQYLDISNNNFSGLLPEDIGIFLPSVKYLKLSWNSFEGNIPSSIGKMKELEYMGFSHNHFSGELPEQLATASNDLIYLELSNNFLRGNIPKFCNSVNMEVLSLSNNNFSGTLEDVFGNNTELSWLSISNNSITGKIPSSIGMFSELSVLLMSENLLEGEIPIEIFNMSSLQMLDLSQNKLIGSIPKFTTGSLRLLYLQQNNLSGSIPSELSEASQLQLLDLRENKFSGKIPNWMDKLSELRVLLLGWNNFEGEIPNQLCQLKKIDIMDLSRNKLNASIPSCFQNMPFGMRQYGDEDYEDGSIFEFSIPLHFTEQIIPDVNYFFNASLPIGSQLVYDESSPSEDQEFEVQFRTKHNEYFYKGDILDIMSGLDLSCNKLTGTIPSQLGDMQKVQVLNLSHNHLTGPIPITFSNLTQIESLDLSYNNLSGKIPNELTKLTSLEIFNVSYNNLSGTPPSTRQFATFVEDSYRGNPGLCGPLLNRKCERVESSPSSQSNDNGEKETVVDMITFYWSFTASYITILLAFITVLCINARWRMAWFYYISKFTRRFFPTFPLY*