AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139240 MtrunA17_Chr7g0218791 95.526 447 18 2 1 446 1 446 0.0 873
Msa1139240 MtrunA17_Chr7g0218831 57.753 445 174 5 4 444 5 439 0.0 538
Msa1139240 MtrunA17_Chr7g0218811 57.812 448 176 6 1 444 11 449 0.0 531
Msa1139240 MtrunA17_Chr7g0218821 57.048 454 183 7 1 445 1 451 0.0 530
Msa1139240 MtrunA17_Chr7g0218841 57.848 446 173 6 4 444 5 440 0.0 529
Msa1139240 MtrunA17_Chr3g0078841 31.185 481 280 14 4 446 9 476 3.57e-71 233
Msa1139240 MtrunA17_Chr6g0454401 30.498 482 278 13 4 441 9 477 4.50e-71 232
Msa1139240 MtrunA17_Chr6g0454341 31.622 487 274 16 1 441 1 474 4.70e-71 232
Msa1139240 MtrunA17_Chr8g0336331 30.608 477 278 12 5 441 10 473 1.53e-69 228
Msa1139240 MtrunA17_Chr2g0278711 30.621 467 278 12 4 438 10 462 5.75e-69 227
Msa1139240 MtrunA17_Chr6g0464871 33.476 466 256 15 5 441 23 463 1.10e-67 223
Msa1139240 MtrunA17_Chr5g0414331 32.189 466 267 14 3 443 11 452 7.50e-67 221
Msa1139240 MtrunA17_Chr3g0118671 30.704 469 284 13 5 440 6 466 2.63e-66 219
Msa1139240 MtrunA17_Chr6g0454191 30.579 484 275 14 4 441 9 477 3.48e-66 219
Msa1139240 MtrunA17_Chr6g0454361 31.328 482 275 15 4 442 10 478 5.25e-66 219
Msa1139240 MtrunA17_Chr6g0464841 33.117 462 263 13 5 441 11 451 5.91e-66 218
Msa1139240 MtrunA17_Chr4g0053501 32.627 472 268 17 3 442 9 462 7.38e-66 219
Msa1139240 MtrunA17_Chr6g0454331 29.707 478 290 13 4 442 6 476 8.27e-66 218
Msa1139240 MtrunA17_Chr6g0454321 30.621 467 273 16 5 433 10 463 1.73e-65 221
Msa1139240 MtrunA17_Chr3g0118771 31.185 481 271 16 4 443 20 481 2.16e-65 218
Msa1139240 MtrunA17_Chr3g0118661 30.543 442 258 12 4 410 12 439 3.06e-65 217
Msa1139240 MtrunA17_Chr5g0414321 31.466 464 271 14 3 442 9 449 5.56e-65 216
Msa1139240 MtrunA17_Chr6g0453951 29.614 466 276 11 4 432 56 506 6.51e-65 217
Msa1139240 MtrunA17_Chr6g0454181 29.436 479 288 11 4 445 9 474 1.06e-64 216
Msa1139240 MtrunA17_Chr6g0464881 29.764 467 276 13 4 442 10 452 1.18e-64 215
Msa1139240 MtrunA17_Chr6g0454261 30.353 481 279 15 4 441 9 476 1.22e-64 215
Msa1139240 MtrunA17_Chr5g0426431 31.250 464 270 13 5 433 12 461 2.46e-64 214
Msa1139240 MtrunA17_Chr3g0118711 31.381 478 283 15 4 446 12 479 2.50e-64 214
Msa1139240 MtrunA17_Chr6g0454211 30.472 466 272 12 4 432 296 746 3.12e-64 220
Msa1139240 MtrunA17_Chr6g0454211 38.125 160 59 5 217 364 105 236 1.76e-24 106
Msa1139240 MtrunA17_Chr7g0217881 31.624 468 272 15 4 441 9 458 3.78e-64 214
Msa1139240 MtrunA17_Chr3g0118691 30.833 480 283 16 4 446 14 481 4.81e-64 214
Msa1139240 MtrunA17_Chr3g0092641 30.638 470 267 14 4 433 11 461 3.80e-63 211
Msa1139240 MtrunA17_Chr6g0454121 30.833 480 277 11 4 441 9 475 5.90e-63 211
Msa1139240 MtrunA17_Chr8g0359821 30.579 484 272 16 4 441 9 474 6.43e-63 211
Msa1139240 MtrunA17_Chr6g0454131 30.208 480 280 12 4 441 9 475 9.21e-63 211
Msa1139240 MtrunA17_Chr6g0454151 28.810 479 287 12 4 441 9 474 1.72e-62 209
Msa1139240 MtrunA17_Chr3g0118701 29.436 479 279 15 4 440 14 475 1.97e-62 209
Msa1139240 MtrunA17_Chr6g0464861 32.196 469 259 14 4 441 10 450 2.42e-62 209
Msa1139240 MtrunA17_Chr7g0249981 30.193 467 270 14 5 442 25 464 6.92e-62 208
Msa1139240 MtrunA17_Chr8g0380531 30.704 469 283 11 3 446 8 459 1.20e-61 207
Msa1139240 MtrunA17_Chr6g0464921 29.915 468 275 14 4 442 10 453 1.57e-61 206
Msa1139240 MtrunA17_Chr6g0454141 29.959 484 277 15 4 441 9 476 1.69e-61 207
Msa1139240 MtrunA17_Chr6g0454291 29.730 481 282 14 4 441 6 473 1.71e-61 207
Msa1139240 MtrunA17_Chr7g0250001 31.818 462 269 13 5 442 6 445 2.47e-61 206
Msa1139240 MtrunA17_Chr5g0448551 31.111 450 276 15 1 436 3 432 3.83e-61 206
Msa1139240 MtrunA17_Chr6g0454201 30.983 468 267 13 4 432 10 460 5.15e-61 206
Msa1139240 MtrunA17_Chr6g0454301 29.774 487 283 14 1 441 254 727 6.42e-61 211
Msa1139240 MtrunA17_Chr6g0454301 38.967 213 113 5 231 432 3 209 6.55e-43 160
Msa1139240 MtrunA17_Chr6g0453961 29.167 480 287 13 4 441 18 486 4.75e-60 204
Msa1139240 MtrunA17_Chr7g0249931 30.538 465 273 16 5 442 40 481 1.67e-59 202
Msa1139240 MtrunA17_Chr4g0053321 30.426 470 281 15 3 442 24 477 3.60e-59 201
Msa1139240 MtrunA17_Chr8g0377921 30.021 473 284 15 4 442 2 461 3.51e-58 198
Msa1139240 MtrunA17_Chr5g0423981 29.638 469 263 15 4 441 9 441 4.54e-58 197
Msa1139240 MtrunA17_Chr1g0207971 30.087 462 279 15 5 441 8 450 1.54e-57 196
Msa1139240 MtrunA17_Chr4g0050341 28.482 481 285 15 4 440 18 483 1.90e-57 197
Msa1139240 MtrunA17_Chr6g0452771 29.730 481 282 14 4 441 9 476 2.06e-57 196
Msa1139240 MtrunA17_Chr1g0207981 28.266 467 297 16 5 442 13 470 6.48e-57 195
Msa1139240 MtrunA17_Chr6g0454251 30.576 399 231 9 4 365 6 395 1.59e-56 192
Msa1139240 MtrunA17_Chr3g0098111 30.213 470 283 18 5 441 9 466 3.07e-56 193
Msa1139240 MtrunA17_Chr1g0207861 31.519 441 267 15 2 417 5 435 5.51e-56 192
Msa1139240 MtrunA17_Chr6g0454351 27.122 483 282 13 4 446 11 463 1.76e-55 191
Msa1139240 MtrunA17_Chr3g0118751 29.412 476 257 15 4 443 5 437 2.46e-55 190
Msa1139240 MtrunA17_Chr1g0161351 31.871 433 252 17 5 408 37 455 9.46e-55 190
Msa1139240 MtrunA17_Chr3g0112761 31.663 439 257 15 5 422 8 424 1.83e-54 188
Msa1139240 MtrunA17_Chr3g0121991 29.012 486 280 12 3 442 77 543 2.36e-53 187
Msa1139240 MtrunA17_Chr8g0365811 29.979 467 264 15 7 434 497 939 7.14e-53 191
Msa1139240 MtrunA17_Chr8g0365811 29.821 446 279 14 5 421 9 449 9.36e-53 190
Msa1139240 MtrunA17_Chr1g0207951 29.449 472 280 14 5 446 124 572 1.24e-52 190
Msa1139240 MtrunA17_Chr1g0207951 30.886 463 281 15 5 441 656 1105 8.23e-52 188
Msa1139240 MtrunA17_Chr3g0112771 29.978 457 267 16 7 438 14 442 9.92e-52 181
Msa1139240 MtrunA17_Chr4g0032331 29.778 450 258 16 5 418 8 435 3.08e-51 179
Msa1139240 MtrunA17_Chr8g0377941 29.374 463 288 13 7 442 9 459 1.08e-49 176
Msa1139240 MtrunA17_Chr5g0401721 30.258 466 272 18 15 442 18 468 1.79e-49 175
Msa1139240 MtrunA17_Chr8g0347281 30.608 477 271 19 4 444 17 469 4.66e-49 174
Msa1139240 MtrunA17_Chr8g0347271 30.689 479 268 17 4 444 18 470 6.28e-49 174
Msa1139240 MtrunA17_Chr6g0454221 41.048 229 113 7 231 441 3 227 6.60e-49 169
Msa1139240 MtrunA17_Chr3g0122001 28.601 486 282 13 3 442 484 950 9.02e-49 179
Msa1139240 MtrunA17_Chr3g0122001 27.801 482 292 14 3 442 4 471 4.10e-46 171
Msa1139240 MtrunA17_Chr5g0412131 29.424 469 282 16 4 440 11 462 1.23e-48 172
Msa1139240 MtrunA17_Chr5g0412111 27.991 468 295 12 1 440 1 454 2.48e-47 169
Msa1139240 MtrunA17_Chr3g0118721 38.281 256 127 9 215 446 40 288 2.71e-47 164
Msa1139240 MtrunA17_Chr7g0275681 29.607 483 281 15 4 442 11 478 3.52e-47 169
Msa1139240 MtrunA17_Chr1g0207831 30.233 473 272 19 6 441 9 460 2.16e-46 167
Msa1139240 MtrunA17_Chr6g0454271 37.349 249 131 8 214 441 39 283 4.84e-46 161
Msa1139240 MtrunA17_Chr5g0412101 28.785 469 290 15 2 440 9 463 1.78e-45 164
Msa1139240 MtrunA17_Chr6g0486251 28.879 464 264 15 9 429 10 450 4.14e-45 163
Msa1139240 MtrunA17_Chr6g0486201 28.879 464 264 15 9 429 10 450 4.14e-45 163
Msa1139240 MtrunA17_Chr7g0243681 27.743 483 283 13 5 441 11 473 6.47e-45 163
Msa1139240 MtrunA17_Chr7g0232401 28.510 463 288 14 5 436 6 456 1.38e-44 162
Msa1139240 MtrunA17_Chr5g0431441 27.489 462 284 15 5 438 18 456 3.90e-44 160
Msa1139240 MtrunA17_Chr8g0334861 29.677 465 273 17 5 434 6 451 9.75e-44 159
Msa1139240 MtrunA17_Chr5g0393591 26.813 455 278 14 5 442 17 433 1.23e-43 159
Msa1139240 MtrunA17_Chr8g0336741 29.241 448 269 14 2 418 10 440 1.25e-43 159
Msa1139240 MtrunA17_Chr7g0243631 28.630 489 286 18 5 446 13 485 1.34e-43 159
Msa1139240 MtrunA17_Chr7g0232331 28.970 466 276 17 5 433 6 453 1.76e-43 159
Msa1139240 MtrunA17_Chr6g0459311 27.802 464 269 14 9 429 17 457 1.93e-43 159
Msa1139240 MtrunA17_Chr5g0419771 28.125 480 287 18 1 434 32 499 2.79e-43 159
Msa1139240 MtrunA17_Chr7g0265041 28.306 484 276 14 4 434 10 475 3.38e-43 158
Msa1139240 MtrunA17_Chr7g0275511 26.907 472 301 14 4 444 14 472 3.39e-43 158
Msa1139240 MtrunA17_Chr5g0419761 27.412 456 282 11 3 418 7 453 7.09e-43 157
Msa1139240 MtrunA17_Chr7g0249961 37.445 227 125 5 231 442 33 257 1.93e-42 151
Msa1139240 MtrunA17_Chr7g0243871 27.579 475 291 15 9 446 13 471 2.05e-42 156
Msa1139240 MtrunA17_Chr8g0335141 29.289 478 265 18 4 436 8 457 4.22e-42 155
Msa1139240 MtrunA17_Chr5g0431361 27.862 463 286 16 5 442 12 451 5.97e-42 154
Msa1139240 MtrunA17_Chr5g0426401 36.986 219 126 4 218 429 78 291 6.72e-42 150
Msa1139240 MtrunA17_Chr7g0265151 26.987 478 289 12 5 436 9 472 7.52e-42 154
Msa1139240 MtrunA17_Chr7g0243931 27.143 490 292 18 5 446 17 489 1.90e-41 154
Msa1139240 MtrunA17_Chr7g0232391 28.211 475 292 15 5 446 6 464 2.28e-41 153
Msa1139240 MtrunA17_Chr6g0454171 36.667 240 111 7 217 437 77 294 2.36e-41 149
Msa1139240 MtrunA17_Chr1g0179901 28.283 495 287 19 1 445 12 488 3.70e-41 153
Msa1139240 MtrunA17_Chr8g0373301 28.033 478 267 18 5 436 9 455 6.72e-41 152
Msa1139240 MtrunA17_Chr4g0060511 26.337 486 304 17 5 446 11 486 8.23e-41 152
Msa1139240 MtrunA17_Chr7g0265101 29.259 499 267 21 5 441 9 483 9.37e-41 152
Msa1139240 MtrunA17_Chr5g0431371 27.061 473 274 17 5 442 10 446 1.58e-40 150
Msa1139240 MtrunA17_Chr7g0243861 26.283 487 300 12 5 446 14 486 1.60e-40 151
Msa1139240 MtrunA17_Chr7g0232341 30.201 447 261 18 5 418 6 434 2.04e-40 150
Msa1139240 MtrunA17_Chr8g0336651 28.540 452 267 14 5 419 781 1213 3.04e-40 154
Msa1139240 MtrunA17_Chr8g0336651 34.538 249 131 5 193 429 527 755 5.77e-36 141
Msa1139240 MtrunA17_Chr8g0336651 29.372 446 267 15 5 419 6 434 7.77e-36 141
Msa1139240 MtrunA17_Chr7g0243771 27.386 482 297 18 5 446 6 474 6.43e-40 149
Msa1139240 MtrunA17_Chr4g0011051 28.157 483 276 17 5 434 9 473 8.04e-40 149
Msa1139240 MtrunA17_Chr4g0072761 27.074 458 285 13 5 440 15 445 1.55e-39 147
Msa1139240 MtrunA17_Chr3g0106231 29.851 469 259 21 5 441 18 448 2.15e-39 147
Msa1139240 MtrunA17_Chr8g0334851 26.947 475 290 16 5 440 6 462 2.30e-39 147
Msa1139240 MtrunA17_Chr1g0207931 40.609 197 102 6 235 417 269 464 2.37e-39 148
Msa1139240 MtrunA17_Chr7g0243801 27.197 478 295 18 9 446 11 475 3.74e-39 147
Msa1139240 MtrunA17_Chr6g0449931 29.345 443 269 15 5 417 6 434 4.60e-39 147
Msa1139240 MtrunA17_Chr7g0243951 27.926 487 291 19 5 446 11 482 5.38e-39 147
Msa1139240 MtrunA17_Chr5g0431401 27.682 466 280 18 5 442 10 446 5.42e-39 146
Msa1139240 MtrunA17_Chr7g0235051 25.966 466 287 13 5 441 11 447 5.99e-39 146
Msa1139240 MtrunA17_Chr8g0339461 30.027 373 211 11 112 446 110 470 6.67e-39 146
Msa1139240 MtrunA17_Chr8g0335161 28.632 468 272 19 9 436 10 455 7.63e-39 146
Msa1139240 MtrunA17_Chr5g0440421 26.305 479 296 15 4 435 9 477 1.46e-38 145
Msa1139240 MtrunA17_Chr5g0429711 26.304 460 297 15 3 437 9 451 2.15e-38 144
Msa1139240 MtrunA17_Chr8g0339451 30.728 371 207 11 112 444 102 460 2.49e-38 144
Msa1139240 MtrunA17_Chr8g0336691 27.293 458 284 12 5 429 13 454 4.72e-38 147
Msa1139240 MtrunA17_Chr8g0336691 27.447 470 299 14 5 444 919 1376 2.84e-37 145
Msa1139240 MtrunA17_Chr8g0336691 27.790 457 281 13 5 442 480 906 4.78e-37 144
Msa1139240 MtrunA17_Chr7g0265051 28.400 500 268 20 5 441 9 481 5.76e-38 144
Msa1139240 MtrunA17_Chr7g0232411 27.397 438 274 13 5 413 6 428 7.53e-38 143
Msa1139240 MtrunA17_Chr4g0044511 26.434 488 281 19 5 442 40 499 8.48e-38 144
Msa1139240 MtrunA17_Chr1g0153451 28.315 445 259 15 5 413 6 426 9.25e-38 143
Msa1139240 MtrunA17_Chr1g0173121 26.415 477 259 18 7 434 16 449 3.77e-37 141
Msa1139240 MtrunA17_Chr5g0431421 27.195 467 281 17 5 442 10 446 5.13e-37 140
Msa1139240 MtrunA17_Chr7g0243761 27.708 480 277 17 3 446 8 453 6.08e-37 140
Msa1139240 MtrunA17_Chr6g0462551 35.747 221 123 7 230 437 240 454 7.87e-37 140
Msa1139240 MtrunA17_Chr8g0339631 29.197 411 242 14 62 436 60 457 9.24e-37 140
Msa1139240 MtrunA17_Chr8g0355011 28.242 347 198 9 112 441 46 358 9.65e-37 138
Msa1139240 MtrunA17_Chr4g0066261 27.950 483 287 19 5 442 13 479 9.82e-37 140
Msa1139240 MtrunA17_Chr6g0462541 33.486 218 129 4 230 437 242 453 1.12e-36 140
Msa1139240 MtrunA17_Chr4g0066281 29.140 477 273 18 6 442 13 464 1.17e-36 140
Msa1139240 MtrunA17_Chr7g0232311 25.561 446 272 13 4 413 5 426 1.85e-36 139
Msa1139240 MtrunA17_Chr7g0243781 28.216 482 272 21 9 441 13 469 2.00e-36 139
Msa1139240 MtrunA17_Chr6g0462571 30.830 253 150 6 201 434 200 446 2.79e-36 139
Msa1139240 MtrunA17_Chr5g0442541 25.873 487 294 18 1 443 1 464 5.43e-36 138
Msa1139240 MtrunA17_Chr4g0072771 25.435 460 293 14 5 440 25 458 8.87e-36 137
Msa1139240 MtrunA17_Chr8g0336731 30.890 382 231 14 62 418 86 459 1.38e-35 137
Msa1139240 MtrunA17_Chr4g0044501 27.406 478 291 16 3 440 7 468 1.39e-35 137
Msa1139240 MtrunA17_Chr1g0159551 27.862 463 261 19 10 434 19 446 1.75e-35 136
Msa1139240 MtrunA17_Chr8g0339601 33.564 289 135 10 173 418 27 301 1.76e-35 134
Msa1139240 MtrunA17_Chr2g0307961 26.856 458 300 11 3 436 11 457 3.61e-35 135
Msa1139240 MtrunA17_Chr6g0462521 33.186 226 135 6 230 445 229 448 4.03e-35 135
Msa1139240 MtrunA17_Chr4g0066221 27.789 493 271 21 5 442 13 475 7.38e-35 135
Msa1139240 MtrunA17_Chr4g0040691 27.126 435 284 12 5 421 8 427 9.55e-35 134
Msa1139240 MtrunA17_Chr4g0044521 25.800 469 283 17 10 438 14 457 1.29e-34 134
Msa1139240 MtrunA17_Chr6g0454371 40.828 169 87 6 282 441 3 167 1.93e-34 126
Msa1139240 MtrunA17_Chr8g0355221 24.635 479 296 17 9 440 19 479 2.83e-34 134
Msa1139240 MtrunA17_Chr7g0265141 26.598 485 284 15 5 436 9 474 4.11e-34 133
Msa1139240 MtrunA17_Chr5g0442581 24.025 487 301 15 1 438 1 467 4.35e-34 134
Msa1139240 MtrunA17_Chr8g0336261 46.043 139 68 3 282 417 3 137 4.74e-34 124
Msa1139240 MtrunA17_Chr4g0014061 25.474 475 285 16 9 438 13 463 1.31e-33 132
Msa1139240 MtrunA17_Chr6g0462531 32.271 251 156 8 201 437 204 454 2.01e-33 131
Msa1139240 MtrunA17_Chr5g0442521 23.400 500 300 14 1 443 1 474 2.33e-33 131
Msa1139240 MtrunA17_Chr5g0403641 34.498 229 119 7 235 440 268 488 3.59e-33 131
Msa1139240 MtrunA17_Chr8g0339441 37.089 213 110 5 257 446 217 428 4.14e-33 129
Msa1139240 MtrunA17_Chr7g0265111 38.579 197 101 5 258 434 306 502 4.15e-33 131
Msa1139240 MtrunA17_Chr3g0079731 32.911 237 135 6 231 445 244 478 5.34e-33 130
Msa1139240 MtrunA17_Chr8g0374931 26.543 486 295 19 5 446 13 480 8.97e-33 129
Msa1139240 MtrunA17_Chr4g0066151 27.021 470 293 14 9 442 22 477 1.12e-32 129
Msa1139240 MtrunA17_Chr8g0361371 25.373 469 288 16 9 439 11 455 1.56e-32 129
Msa1139240 MtrunA17_Chr1g0153461 38.728 173 90 3 257 413 3 175 1.64e-32 122
Msa1139240 MtrunA17_Chr5g0432731 32.714 269 143 9 200 442 38 294 1.83e-32 125
Msa1139240 MtrunA17_Chr1g0207881 26.915 457 227 15 5 443 8 375 2.07e-32 127
Msa1139240 MtrunA17_Chr4g0066201 26.981 467 292 19 9 442 22 472 2.46e-32 128
Msa1139240 MtrunA17_Chr5g0442601 23.457 486 301 14 1 436 400 864 2.71e-32 130
Msa1139240 MtrunA17_Chr5g0442601 25.000 316 187 8 98 385 43 336 1.07e-21 98.2
Msa1139240 MtrunA17_Chr4g0040711 26.484 438 283 12 5 421 8 427 5.85e-32 127
Msa1139240 MtrunA17_Chr7g0250021 28.824 340 201 12 5 326 12 328 6.18e-32 124
Msa1139240 MtrunA17_Chr5g0428081 26.415 477 295 16 5 441 13 473 6.63e-32 127
Msa1139240 MtrunA17_Chr5g0401851 24.124 485 305 13 9 446 14 482 8.31e-32 127
Msa1139240 MtrunA17_Chr5g0442561 24.236 491 304 19 1 443 1 471 1.07e-31 126
Msa1139240 MtrunA17_Chr8g0366391 25.728 412 271 11 3 387 6 409 1.13e-31 126
Msa1139240 MtrunA17_Chr5g0416741 24.222 450 285 12 3 412 11 444 1.59e-31 126
Msa1139240 MtrunA17_Chr2g0283041 27.434 452 286 14 5 437 7 435 1.88e-31 125
Msa1139240 MtrunA17_Chr5g0442491 22.634 486 304 15 9 443 9 473 2.44e-31 125
Msa1139240 MtrunA17_Chr7g0241801 25.275 455 285 17 5 443 9 424 3.38e-31 124
Msa1139240 MtrunA17_Chr2g0329111 26.483 472 282 18 7 433 8 459 3.44e-31 125
Msa1139240 MtrunA17_Chr4g0066171 27.021 470 295 17 9 446 25 478 3.74e-31 125
Msa1139240 MtrunA17_Chr4g0044481 26.812 414 229 13 5 387 27 397 5.66e-31 123
Msa1139240 MtrunA17_Chr5g0410941 25.934 482 299 18 5 446 25 488 8.66e-31 124
Msa1139240 MtrunA17_Chr7g0241781 24.336 452 297 14 5 445 9 426 9.03e-31 123
Msa1139240 MtrunA17_Chr1g0165701 25.231 432 285 12 9 410 19 442 2.90e-30 122
Msa1139240 MtrunA17_Chr6g0463891 24.580 476 295 13 3 435 10 464 3.02e-30 122
Msa1139240 MtrunA17_Chr2g0294921 25.466 483 304 16 5 446 162 629 3.67e-30 123
Msa1139240 MtrunA17_Chr7g0243811 27.226 393 242 15 17 385 1 373 4.78e-30 120
Msa1139240 MtrunA17_Chr4g0029131 27.235 481 262 18 5 441 12 448 6.94e-30 122
Msa1139240 MtrunA17_Chr7g0218311 25.880 483 299 16 5 446 18 482 7.06e-30 121
Msa1139240 MtrunA17_Chr4g0066131 26.360 478 294 14 9 446 17 476 7.62e-30 121
Msa1139240 MtrunA17_Chr8g0336251 25.000 472 310 13 5 446 7 464 1.67e-29 120
Msa1139240 MtrunA17_Chr2g0294931 24.896 482 302 17 9 446 15 480 3.80e-29 119
Msa1139240 MtrunA17_Chr8g0382021 25.328 458 288 16 10 434 39 475 4.12e-29 119
Msa1139240 MtrunA17_Chr8g0334831 24.307 469 287 17 9 432 10 455 4.41e-29 119
Msa1139240 MtrunA17_Chr7g0243711 32.692 208 121 4 253 441 103 310 4.50e-29 116
Msa1139240 MtrunA17_Chr5g0448521 22.414 464 308 13 9 436 9 456 5.00e-29 118
Msa1139240 MtrunA17_Chr5g0442511 28.870 239 139 7 235 445 259 494 5.46e-29 119
Msa1139240 MtrunA17_Chr1g0196851 25.442 452 275 14 5 421 49 473 5.62e-29 119
Msa1139240 MtrunA17_Chr8g0370941 29.643 280 147 9 203 445 220 486 5.96e-29 119
Msa1139240 MtrunA17_Chr6g0463851 24.167 480 307 14 5 442 13 477 1.01e-28 118
Msa1139240 MtrunA17_Chr5g0409591 35.135 185 101 3 254 419 271 455 1.27e-28 117
Msa1139240 MtrunA17_Chr8g0336321 24.788 472 311 13 5 446 7 464 1.46e-28 117
Msa1139240 MtrunA17_Chr5g0429681 25.054 459 296 13 6 434 45 485 1.85e-28 117
Msa1139240 MtrunA17_Chr3g0106251 36.269 193 107 6 255 438 100 285 5.80e-28 113
Msa1139240 MtrunA17_Chr7g0243611 28.873 284 166 10 123 387 5 271 1.12e-27 111
Msa1139240 MtrunA17_Chr8g0374941 25.893 448 266 14 9 412 15 440 1.22e-27 116
Msa1139240 MtrunA17_Chr8g0374941 24.101 473 307 17 9 442 953 1412 1.22e-25 110
Msa1139240 MtrunA17_Chr8g0374941 25.112 446 272 15 9 412 480 905 3.17e-23 103
Msa1139240 MtrunA17_Chr2g0319761 26.432 454 293 14 5 441 8 437 1.79e-27 114
Msa1139240 MtrunA17_Chr7g0232351 27.525 396 228 17 5 364 6 378 2.17e-27 112
Msa1139240 MtrunA17_Chr6g0482061 23.542 463 314 12 5 434 11 466 2.61e-27 114
Msa1139240 MtrunA17_Chr7g0243911 35.119 168 94 3 258 410 22 189 3.82e-27 108
Msa1139240 MtrunA17_Chr4g0029151 25.442 452 272 15 5 421 20 441 4.89e-27 112
Msa1139240 MtrunA17_Chr8g0374901 24.580 476 297 16 9 441 16 472 5.42e-27 113
Msa1139240 MtrunA17_Chr6g0463861 25.470 479 293 15 5 442 13 468 7.83e-27 112
Msa1139240 MtrunA17_Chr7g0243851 32.381 210 119 5 258 446 234 441 6.17e-26 109
Msa1139240 MtrunA17_Chr6g0454231 33.197 244 105 12 217 441 11 215 1.18e-25 108
Msa1139240 MtrunA17_Chr6g0454231 26.061 165 108 4 4 160 249 407 4.27e-14 73.9
Msa1139240 MtrunA17_Chr8g0374971 24.691 486 288 17 9 442 16 475 1.34e-25 108
Msa1139240 MtrunA17_Chr2g0302961 23.913 460 273 18 12 424 12 441 3.70e-25 107
Msa1139240 MtrunA17_Chr5g0416821 24.689 482 280 17 3 434 12 460 3.98e-25 107
Msa1139240 MtrunA17_Chr6g0466831 24.449 454 312 13 5 441 18 457 4.63e-25 107
Msa1139240 MtrunA17_Chr6g0466841 24.229 454 313 13 5 441 18 457 5.49e-25 107
Msa1139240 MtrunA17_Chr2g0294941 35.057 174 93 3 257 410 165 338 1.15e-24 105
Msa1139240 MtrunA17_Chr3g0079711 34.066 182 98 6 283 442 2 183 1.43e-24 100
Msa1139240 MtrunA17_Chr4g0042931 25.056 447 291 15 5 422 7 438 2.24e-24 105
Msa1139240 MtrunA17_Chr2g0302991 23.881 469 310 17 9 446 9 461 6.24e-24 103
Msa1139240 MtrunA17_Chr2g0319731 26.364 440 281 15 5 421 25 444 6.74e-24 103
Msa1139240 MtrunA17_Chr2g0319791 26.712 438 282 13 5 421 8 427 8.14e-24 103
Msa1139240 MtrunA17_Chr8g0367221 23.333 480 296 16 5 442 12 461 8.55e-24 105
Msa1139240 MtrunA17_Chr8g0367221 24.201 438 288 13 5 414 1288 1709 6.70e-23 102
Msa1139240 MtrunA17_Chr8g0367221 24.832 447 274 18 5 414 798 1219 1.64e-22 101
Msa1139240 MtrunA17_Chr2g0278721 24.947 473 284 14 5 438 517 957 2.59e-23 103
Msa1139240 MtrunA17_Chr2g0278721 23.861 461 311 13 5 441 15 459 8.72e-22 98.6
Msa1139240 MtrunA17_Chr2g0278741 26.256 438 271 15 5 413 97 511 4.02e-23 102
Msa1139240 MtrunA17_Chr2g0319801 25.229 436 291 15 5 421 8 427 1.71e-22 99.8
Msa1139240 MtrunA17_Chr8g0337381 42.308 104 60 0 326 429 3 106 2.36e-22 92.4
Msa1139240 MtrunA17_Chr2g0319751 26.218 431 277 14 5 413 485 896 2.38e-22 100
Msa1139240 MtrunA17_Chr2g0319751 23.653 427 269 15 5 413 8 395 2.74e-17 84.7
Msa1139240 MtrunA17_Chr4g0069611 23.888 427 290 12 5 413 15 424 4.45e-22 98.6
Msa1139240 MtrunA17_Chr8g0361411 27.805 410 233 14 5 381 8 387 5.27e-22 98.2
Msa1139240 MtrunA17_Chr5g0431431 35.681 213 112 7 202 404 144 341 1.46e-21 95.9
Msa1139240 MtrunA17_Chr2g0302851 23.246 456 317 11 5 442 16 456 2.86e-21 95.9
Msa1139240 MtrunA17_Chr5g0420801 23.094 446 297 14 5 423 7 433 5.55e-21 95.1
Msa1139240 MtrunA17_Chr6g0464091 25.160 469 297 17 5 441 18 464 9.50e-21 94.4
Msa1139240 MtrunA17_Chr4g0042891 30.876 217 134 5 231 434 239 452 1.52e-20 94.0
Msa1139240 MtrunA17_Chr8g0357361 36.567 134 81 2 257 387 117 249 2.43e-20 90.5
Msa1139240 MtrunA17_Chr5g0427571 31.330 233 126 7 215 421 46 270 4.38e-20 90.5
Msa1139240 MtrunA17_Chr8g0350881 22.561 492 295 17 6 441 13 474 4.48e-20 92.4
Msa1139240 MtrunA17_Chr8g0369341 30.049 203 129 6 257 446 268 470 4.08e-19 89.7
Msa1139240 MtrunA17_Chr3g0092031 33.962 159 97 5 260 413 6 161 9.32e-19 84.3
Msa1139240 MtrunA17_Chr6g0453981 27.434 226 132 6 121 320 1 220 9.48e-18 82.0
Msa1139240 MtrunA17_Chr4g0039881 23.445 418 285 11 14 413 1 401 1.30e-17 84.7
Msa1139240 MtrunA17_Chr5g0426411 27.329 161 110 4 4 160 11 168 1.75e-16 77.0
Msa1139240 MtrunA17_Chr7g0231631 28.571 168 93 4 258 412 67 220 1.39e-14 73.9
Msa1139240 MtrunA17_Chr2g0321331 33.129 163 86 5 265 421 91 236 2.25e-14 73.2
Msa1139240 MtrunA17_Chr4g0066141 35.075 134 69 5 326 442 217 349 3.09e-14 73.9
Msa1139240 MtrunA17_Chr6g0453941 35.897 117 62 3 217 320 157 273 2.04e-13 70.5
Msa1139240 MtrunA17_Chr6g0454391 46.377 69 33 2 339 407 11 75 8.33e-13 65.1
Msa1139240 MtrunA17_Chr7g0243731 40.580 69 41 0 326 394 10 78 1.25e-12 63.2
Msa1139240 MtrunA17_Chr6g0454281 23.494 166 116 3 4 161 9 171 1.79e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139240 AT3G02100.1 39.696 461 253 8 1 445 9 460 3.65e-118 353
Msa1139240 AT1G22360.1 30.365 438 268 11 5 413 10 439 1.99e-64 215
Msa1139240 AT1G05675.1 30.736 462 279 12 5 442 6 450 4.71e-64 213
Msa1139240 AT1G22370.2 31.050 438 273 10 4 418 12 443 9.16e-63 211
Msa1139240 AT1G22400.1 29.841 439 272 10 4 413 12 443 1.58e-62 210
Msa1139240 AT1G22360.2 30.664 437 266 11 5 412 10 438 1.60e-62 210
Msa1139240 AT1G22380.1 30.455 440 267 12 4 413 12 442 4.96e-62 209
Msa1139240 AT1G05680.1 31.317 463 275 14 5 442 6 450 5.05e-62 208
Msa1139240 AT1G78270.1 30.837 454 267 13 4 423 12 452 9.69e-61 206
Msa1139240 AT3G21560.1 28.692 474 287 14 4 441 11 469 2.21e-60 205
Msa1139240 AT3G22250.1 27.447 470 282 13 4 438 7 452 3.06e-60 204
Msa1139240 AT1G22340.1 29.773 440 271 14 4 413 12 443 4.86e-60 204
Msa1139240 AT4G15550.1 30.526 475 284 18 4 446 12 472 2.48e-56 194
Msa1139240 AT2G31750.1 29.654 462 278 13 7 441 10 451 3.93e-56 192
Msa1139240 AT2G31750.2 29.654 462 278 13 7 441 10 451 9.46e-56 192
Msa1139240 AT3G46670.1 28.509 456 288 11 9 445 13 449 1.60e-55 191
Msa1139240 AT2G43840.2 28.602 465 278 15 5 442 7 444 2.19e-55 190
Msa1139240 AT2G43840.1 28.602 465 278 15 5 442 7 444 3.16e-55 190
Msa1139240 AT5G05860.1 30.736 462 260 17 5 438 9 438 9.03e-54 186
Msa1139240 AT2G23260.1 29.892 465 276 16 5 442 10 451 9.17e-54 186
Msa1139240 AT5G05880.1 30.342 468 265 16 7 443 10 447 1.84e-53 185
Msa1139240 AT4G15480.1 28.511 470 295 16 3 441 16 475 2.54e-53 186
Msa1139240 AT3G55700.1 29.909 438 267 14 5 422 8 425 3.64e-53 185
Msa1139240 AT3G46720.1 30.180 444 283 12 5 440 9 433 4.49e-53 184
Msa1139240 AT2G23250.1 28.475 446 281 13 15 442 8 433 1.08e-52 183
Msa1139240 AT1G05560.1 29.832 476 271 18 1 441 1 448 1.09e-52 184
Msa1139240 AT1G05560.2 29.832 476 271 18 1 441 51 498 2.41e-52 184
Msa1139240 AT3G11340.1 28.355 462 283 13 4 443 8 443 2.50e-52 182
Msa1139240 AT2G31790.1 27.468 466 289 12 5 441 8 453 1.20e-51 181
Msa1139240 AT3G46700.1 25.275 455 305 10 5 445 9 442 1.90e-51 180
Msa1139240 AT2G43820.1 29.004 462 280 16 5 442 7 444 4.56e-51 179
Msa1139240 AT4G15500.1 27.137 468 297 16 4 442 8 460 4.83e-51 179
Msa1139240 AT3G46690.1 29.258 458 288 14 5 442 9 450 7.92e-51 178
Msa1139240 AT4G14090.1 27.922 462 292 13 3 442 11 453 8.34e-51 178
Msa1139240 AT3G55710.1 28.894 443 282 11 5 431 8 433 2.66e-50 177
Msa1139240 AT4G15490.1 26.552 467 304 18 5 442 8 464 1.33e-49 176
Msa1139240 AT2G36970.1 27.231 437 287 9 4 417 9 437 1.43e-49 176
Msa1139240 AT3G46660.1 27.511 458 292 13 9 445 18 456 8.80e-49 173
Msa1139240 AT5G59590.1 27.609 460 289 14 5 442 10 447 1.01e-48 172
Msa1139240 AT3G46650.1 28.571 441 273 10 5 434 10 419 2.47e-48 171
Msa1139240 AT5G59580.1 26.350 463 296 13 5 445 9 448 4.57e-48 171
Msa1139240 AT2G36750.1 29.814 483 268 17 5 436 10 472 1.17e-46 168
Msa1139240 AT3G46680.1 26.269 453 298 13 5 440 9 442 5.89e-46 165
Msa1139240 AT2G30150.2 27.542 472 280 16 1 441 9 449 6.33e-46 165
Msa1139240 AT5G05900.1 29.122 467 271 14 7 443 10 446 2.56e-45 164
Msa1139240 AT2G28080.1 26.797 459 300 15 9 442 22 469 3.29e-44 161
Msa1139240 AT5G38010.1 27.376 442 287 11 5 430 10 433 7.20e-44 160
Msa1139240 AT2G30150.1 27.371 464 275 16 9 441 1 433 8.95e-44 159
Msa1139240 AT5G05890.1 27.682 466 288 13 5 443 8 451 1.07e-43 159
Msa1139240 AT5G38040.1 27.765 443 288 12 15 441 20 446 1.68e-43 159
Msa1139240 AT3G53160.1 28.085 470 269 16 5 425 8 457 4.16e-43 158
Msa1139240 AT1G05530.1 27.066 484 277 16 1 441 1 451 7.91e-43 157
Msa1139240 AT3G53150.1 29.009 424 240 14 5 387 22 425 1.10e-42 158
Msa1139240 AT2G36770.1 27.105 487 290 16 5 443 14 483 1.55e-42 157
Msa1139240 AT5G05870.1 26.552 467 292 14 5 442 8 452 2.07e-42 156
Msa1139240 AT2G36760.1 27.607 489 282 16 5 441 14 482 5.32e-42 155
Msa1139240 AT4G01070.1 28.035 453 256 16 3 413 6 430 6.11e-42 155
Msa1139240 AT1G24100.1 27.097 465 291 13 5 441 11 455 1.69e-41 153
Msa1139240 AT1G01420.2 28.281 442 268 16 3 413 9 432 3.95e-41 153
Msa1139240 AT1G01420.1 28.281 442 268 16 3 413 6 429 4.09e-41 153
Msa1139240 AT2G30140.1 27.039 466 283 14 5 442 13 449 1.23e-40 151
Msa1139240 AT2G36780.1 28.542 480 274 17 5 434 14 474 1.33e-40 152
Msa1139240 AT2G30140.2 26.840 462 288 14 5 442 13 448 1.38e-40 151
Msa1139240 AT2G26480.1 25.285 439 294 11 7 433 10 426 1.62e-40 150
Msa1139240 AT2G36800.1 28.049 492 267 17 5 436 12 476 3.21e-40 150
Msa1139240 AT2G15480.1 28.454 485 282 19 5 441 10 477 4.83e-40 150
Msa1139240 AT1G01390.1 27.130 446 269 12 3 413 6 430 5.84e-40 149
Msa1139240 AT1G01390.2 27.130 446 269 12 3 413 23 447 6.89e-40 150
Msa1139240 AT1G22370.1 35.983 239 130 6 197 418 41 273 7.06e-40 145
Msa1139240 AT2G15490.3 27.801 482 289 15 5 441 7 474 6.57e-39 147
Msa1139240 AT2G15490.1 27.629 485 289 15 5 441 7 477 1.68e-38 145
Msa1139240 AT5G17050.1 25.169 445 271 13 3 416 10 423 6.64e-38 144
Msa1139240 AT2G36790.1 29.124 491 262 19 5 436 13 476 4.21e-37 142
Msa1139240 AT2G15480.2 27.475 495 284 18 5 441 10 487 5.71e-37 142
Msa1139240 AT4G34131.1 25.826 484 302 12 5 446 10 478 8.67e-36 138
Msa1139240 AT2G16890.2 27.004 474 285 13 5 438 9 461 1.20e-35 137
Msa1139240 AT1G10400.1 27.824 478 281 17 5 442 7 460 3.18e-35 136
Msa1139240 AT3G16520.2 35.071 211 114 6 235 432 239 439 1.31e-34 134
Msa1139240 AT3G21790.1 24.481 482 301 15 9 441 8 475 1.33e-34 135
Msa1139240 AT3G16520.3 35.071 211 114 6 235 432 239 439 1.53e-34 134
Msa1139240 AT3G16520.1 35.071 211 114 6 235 432 239 439 1.77e-34 134
Msa1139240 AT5G65550.1 26.984 441 269 15 5 414 9 427 3.14e-34 134
Msa1139240 AT3G21800.1 24.795 488 290 16 9 442 9 473 1.38e-33 132
Msa1139240 AT3G21750.1 22.105 475 313 13 9 442 8 466 2.45e-33 131
Msa1139240 AT2G16890.3 27.002 437 265 12 5 408 9 424 4.63e-33 129
Msa1139240 AT4G34135.1 26.009 446 275 13 5 410 11 441 4.86e-33 130
Msa1139240 AT4G34138.1 25.988 481 297 14 1 436 1 467 8.92e-33 130
Msa1139240 AT3G21780.1 25.658 456 273 14 28 446 44 470 8.52e-32 127
Msa1139240 AT5G14860.1 26.281 449 272 13 5 413 8 437 1.25e-31 126
Msa1139240 AT2G29740.1 26.087 483 294 18 5 442 8 472 2.14e-31 125
Msa1139240 AT3G21760.1 24.686 478 309 12 9 442 8 478 2.56e-30 123
Msa1139240 AT5G53990.1 23.007 439 302 11 3 432 4 415 8.06e-30 120
Msa1139240 AT4G36770.1 27.511 458 256 21 5 417 4 430 1.14e-29 120
Msa1139240 AT5G54010.1 23.866 419 293 10 5 413 6 408 1.29e-29 120
Msa1139240 AT4G15280.1 22.687 454 301 11 9 424 8 449 1.43e-29 120
Msa1139240 AT4G15280.2 22.687 454 301 11 9 424 40 481 1.96e-29 120
Msa1139240 AT4G27570.1 25.056 443 289 12 5 432 7 421 2.06e-29 120
Msa1139240 AT5G17030.1 29.108 213 143 5 232 440 240 448 2.70e-29 119
Msa1139240 AT2G29730.1 24.681 470 314 16 1 441 1 459 3.11e-29 119
Msa1139240 AT2G18570.1 23.246 499 296 19 1 446 1 465 3.34e-29 119
Msa1139240 AT5G26310.1 24.558 452 281 15 4 418 6 434 3.59e-29 119
Msa1139240 AT5G12890.1 25.304 494 297 16 3 444 8 481 5.58e-29 119
Msa1139240 AT5G66690.1 25.427 468 267 18 4 422 6 440 9.49e-29 118
Msa1139240 AT2G22930.1 24.648 426 281 14 3 413 2 402 1.13e-28 117
Msa1139240 AT4G27560.1 23.649 444 294 12 5 432 7 421 1.39e-28 117
Msa1139240 AT3G50740.1 33.981 206 109 5 235 418 241 441 3.12e-28 117
Msa1139240 AT5G49690.1 25.745 470 293 18 5 445 10 452 3.34e-28 116
Msa1139240 AT2G29750.1 31.982 222 129 7 231 437 249 463 4.81e-28 116
Msa1139240 AT4G15260.1 28.137 263 148 8 215 442 96 352 5.49e-28 114
Msa1139240 AT2G18560.1 29.555 247 145 7 221 446 137 375 5.81e-28 114
Msa1139240 AT5G17040.2 29.947 187 125 4 232 416 122 304 8.93e-28 113
Msa1139240 AT5G17040.1 29.947 187 125 4 232 416 224 406 1.37e-27 114
Msa1139240 AT1G07250.1 30.415 217 140 5 231 436 245 461 2.50e-27 114
Msa1139240 AT1G64910.1 23.934 422 279 12 5 411 6 400 2.50e-27 114
Msa1139240 AT3G29630.1 23.923 418 287 12 5 411 6 403 4.77e-27 113
Msa1139240 AT3G29630.2 24.455 413 265 12 5 411 6 377 1.40e-26 111
Msa1139240 AT1G30530.1 30.660 212 139 5 232 440 237 443 1.51e-26 111
Msa1139240 AT1G50580.1 23.022 417 290 10 5 411 6 401 1.60e-26 111
Msa1139240 AT5G37950.1 25.237 317 222 6 62 366 32 345 5.67e-26 108
Msa1139240 AT2G29710.1 27.600 250 155 8 215 442 215 460 4.15e-25 107
Msa1139240 AT1G07260.1 29.596 223 136 6 231 437 244 461 4.50e-25 107
Msa1139240 AT1G73880.1 24.426 479 291 16 5 441 14 463 1.35e-24 106
Msa1139240 AT1G64920.1 23.821 424 285 13 5 413 6 406 3.83e-24 104
Msa1139240 AT5G03490.1 24.516 465 301 16 4 441 18 459 3.90e-24 104
Msa1139240 AT2G22590.1 23.909 481 294 19 5 443 15 465 5.79e-24 104
Msa1139240 AT5G37950.2 24.684 316 219 6 62 366 32 339 9.46e-24 102
Msa1139240 AT1G51210.1 24.099 444 274 15 4 419 19 427 1.41e-23 102
Msa1139240 AT4G09500.2 23.349 424 287 14 4 413 3 402 7.99e-23 100
Msa1139240 AT5G54060.1 23.877 423 288 12 10 412 18 426 5.56e-22 98.6
Msa1139240 AT1G07240.1 25.322 233 155 5 231 446 244 474 1.36e-21 97.4
Msa1139240 AT4G09500.1 23.223 422 265 15 4 413 3 377 3.14e-21 95.9
Msa1139240 AT1G06000.1 23.617 470 279 18 4 441 9 430 2.01e-18 87.4
Msa1139240 AT4G01070.2 27.108 332 188 14 3 308 6 309 9.34e-18 84.7
Msa1139240 AT4G34135.2 25.519 337 205 11 5 310 11 332 3.61e-14 73.9
Msa1139240 AT2G23210.1 26.389 288 170 12 5 273 10 274 6.10e-14 72.4

Find 106 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACCAATTGGTAGAAATTT+TGG 0.147440 7_4:-9418153 None:intergenic
TCTACCAATTGGTCCATTAA+TGG 0.218875 7_4:+9418161 Msa1139240:CDS
ATGAAGACAACTTCAATTAT+TGG 0.223609 7_4:+9415206 Msa1139240:CDS
TTCTACCAGCTTCCCTATAA+TGG 0.245607 7_4:+9415052 Msa1139240:exon
GAAACATATATAACAGATTT+AGG 0.257469 7_4:-9418258 None:intergenic
GCTCATCAGTTGGGAATTAA+AGG 0.259785 7_4:+9415452 Msa1139240:CDS
GCAATACCATTCCCAATTCT+AGG 0.261318 7_4:+9415092 Msa1139240:CDS
GAGATGCAAAGTATGAATTT+AGG 0.284928 7_4:+9418072 Msa1139240:CDS
AAATGTGGGTTTCCCATTAT+AGG 0.286991 7_4:-9415065 None:intergenic
TTTATCTCTTCTATGAGTTT+AGG 0.305049 7_4:-9415362 None:intergenic
CTATAGAAAGTGTGTGTAAT+GGG 0.315607 7_4:+9418520 Msa1139240:CDS
GCTAATTCTTTGAATTGGTT+TGG 0.327436 7_4:-9418306 None:intergenic
TATCAATTGGGCAAAGGAAT+AGG 0.342556 7_4:+9418782 Msa1139240:CDS
ATTGCTGCTGCTTCCATCAT+AGG 0.345591 7_4:-9418000 None:intergenic
GTAGAAGTGGTGTAAATTAT+TGG 0.349060 7_4:-9415035 None:intergenic
CTAGAGCTAATTCTTTGAAT+TGG 0.349399 7_4:-9418311 None:intergenic
TTCTTCAAATTTGCCTATGA+TGG 0.352015 7_4:+9417987 Msa1139240:CDS
AGTTGAATTGCTTGTTTCCT+TGG 0.360996 7_4:-9417964 None:intergenic
GCTCAGTGGCCGATAATCTA+TGG 0.366911 7_4:-9418951 None:intergenic
TCTTGAGGACTCACACCATC+TGG 0.380472 7_4:-9415278 None:intergenic
TCACCAAAATTTCTACCAAT+TGG 0.381362 7_4:+9418150 Msa1139240:CDS
ATTTAAACAAGTTTATCAAT+TGG 0.381381 7_4:+9418769 Msa1139240:CDS
TTTAAACAAGTTTATCAATT+GGG 0.389077 7_4:+9418770 Msa1139240:CDS
GGATTCATATGTCCTAGAAT+TGG 0.394232 7_4:-9415104 None:intergenic
GTGGCTTTGTAACACTAGTA+TGG 0.398180 7_4:+9418101 Msa1139240:CDS
AATGTGGGTTTCCCATTATA+GGG 0.404749 7_4:-9415064 None:intergenic
GCCAGCCTCAGCAACTTCAT+TGG 0.406064 7_4:+9415487 Msa1139240:CDS
TCTGTTATATATGTTTCATT+TGG 0.407942 7_4:+9418264 Msa1139240:CDS
TGATGTGTGGAAGGTTGGAT+TGG 0.407953 7_4:+9418602 Msa1139240:CDS
GAGTTTCATATCAAGATCTA+AGG 0.411253 7_4:-9418973 None:intergenic
TCTACCAGCTTCCCTATAAT+GGG 0.419163 7_4:+9415053 Msa1139240:exon
GGAAGTCAAGGTAAAATTGT+AGG 0.436850 7_4:+9418423 Msa1139240:CDS
TTGGGTTGTACGTAAAGATA+AGG 0.439435 7_4:+9418362 Msa1139240:CDS
ACCAATGAAGTTGCTGAGGC+TGG 0.449225 7_4:-9415488 None:intergenic
GATTCATATGTCCTAGAATT+GGG 0.450823 7_4:-9415103 None:intergenic
ATTTGTGATGTGTGGAAGGT+TGG 0.452190 7_4:+9418597 Msa1139240:CDS
GATGTGTGGAAGGTTGGATT+GGG 0.458420 7_4:+9418603 Msa1139240:CDS
TCTTGTGGACAAAATAACTT+TGG 0.459475 7_4:-9415318 None:intergenic
TTGGAAGTTGCTCATCAGTT+GGG 0.463102 7_4:+9415443 Msa1139240:CDS
GGAAGAGATAAAGAAGAAGA+TGG 0.464388 7_4:+9418659 Msa1139240:CDS
AAACGTGAGAAAATTGCATA+AGG 0.468129 7_4:-9415127 None:intergenic
CAATTCAAAGAATTAGCTCT+AGG 0.470952 7_4:+9418312 Msa1139240:CDS
TGACTTCCTTTGAATTCACT+TGG 0.471745 7_4:-9418408 None:intergenic
CCCAAAGAAAAGGTCTCTTA+AGG 0.475692 7_4:-9418344 None:intergenic
TGGGTTGTACGTAAAGATAA+GGG 0.481271 7_4:+9418363 Msa1139240:CDS
AACGTGAGAAAATTGCATAA+GGG 0.485159 7_4:-9415126 None:intergenic
CTTGGAAGTTGCTCATCAGT+TGG 0.487035 7_4:+9415442 Msa1139240:CDS
ACTATAGAAAGTGTGTGTAA+TGG 0.489636 7_4:+9418519 Msa1139240:CDS
GCATCTCTTTCATCATATGA+AGG 0.493422 7_4:-9418056 None:intergenic
GACTTCCTTTGAATTCACTT+GGG 0.497537 7_4:-9418407 None:intergenic
TTACGTACAACCCAAAGAAA+AGG 0.510398 7_4:-9418354 None:intergenic
AAGATGAAACATGCATAGAA+TGG 0.513759 7_4:+9418220 Msa1139240:CDS
GTTTCCCATTATAGGGAAGC+TGG 0.519115 7_4:-9415057 None:intergenic
TCAATTATTGGTCATGAGCA+AGG 0.521225 7_4:+9415218 Msa1139240:CDS
GTTTCATTACACATTGCGGT+TGG 0.523271 7_4:+9418490 Msa1139240:CDS
CATCATATGAAGGAAGAAGA+AGG 0.529513 7_4:-9418046 None:intergenic
ATAACAACATGGGATCTTTG+TGG 0.534699 7_4:+9418193 Msa1139240:CDS
GCAATGCCATGGTATAACTT+AGG 0.539721 7_4:+9418018 Msa1139240:CDS
TGAGCTCATAGTGGTTCTTG+TGG 0.542914 7_4:-9415333 None:intergenic
CAAGTTTATCAATTGGGCAA+AGG 0.545698 7_4:+9418776 Msa1139240:CDS
ATCTTTGAAATTAATGACAA+TGG 0.553092 7_4:+9418716 Msa1139240:CDS
ATGGTATTGCAAGAAAATGT+GGG 0.557257 7_4:-9415079 None:intergenic
TGGTTAGACATGGTTCGTCA+TGG 0.557877 7_4:+9418871 Msa1139240:three_prime_UTR
ACGTGAGAAAATTGCATAAG+GGG 0.558221 7_4:-9415125 None:intergenic
GTCAAGGTAAAATTGTAGGT+TGG 0.558851 7_4:+9418427 Msa1139240:CDS
AATTCAAAGAATTAGCTCTA+GGG 0.562650 7_4:+9418313 Msa1139240:CDS
AATAGGAATATTCAAACTTG+TGG 0.566500 7_4:+9418799 Msa1139240:exon
CTTGAGGACTCACACCATCT+GGG 0.568847 7_4:-9415277 None:intergenic
AAAGTATGAATTTAGGAGAG+TGG 0.571212 7_4:+9418079 Msa1139240:CDS
GATGAATTGCTTGAAGATGA+AGG 0.573526 7_4:+9418681 Msa1139240:CDS
TATAGGGAAGCTGGTAGAAG+TGG 0.575502 7_4:-9415048 None:intergenic
GTAATGAAACATGCTATTGA+AGG 0.575536 7_4:-9418477 None:intergenic
TAACACTAGTATGGATCTTG+AGG 0.575545 7_4:+9418110 Msa1139240:CDS
TGAAAATGGATTAATAACAA+AGG 0.585785 7_4:+9418638 Msa1139240:CDS
CAACTGATGAGCAACTTCCA+AGG 0.586354 7_4:-9415441 None:intergenic
AGTGAATTCAAAGGAAGTCA+AGG 0.590887 7_4:+9418411 Msa1139240:CDS
CGAGTATTTCGATGAACAAG+TGG 0.591266 7_4:-9418904 None:intergenic
AATCGCTACTTGGTTAGACA+TGG 0.592623 7_4:+9418861 Msa1139240:three_prime_UTR
AATGGTATTGCAAGAAAATG+TGG 0.593304 7_4:-9415080 None:intergenic
TTTGAAATTAATGACAATGG+TGG 0.597188 7_4:+9418719 Msa1139240:CDS
GGCGAAGAACAAAGCAGAAG+GGG 0.603023 7_4:+9418740 Msa1139240:CDS
AGGAAGCATTGAGCTCATAG+TGG 0.603824 7_4:-9415342 None:intergenic
GTGGCGAAGAACAAAGCAGA+AGG 0.604634 7_4:+9418738 Msa1139240:CDS
GCATACCCAAGTGAATTCAA+AGG 0.608597 7_4:+9418402 Msa1139240:CDS
TCAAGATGATAGAAAAGATG+TGG 0.608705 7_4:+9415295 Msa1139240:CDS
ATATATTTGTGATGTGTGGA+AGG 0.612915 7_4:+9418593 Msa1139240:CDS
AGAAACCAATGAAGTTGCTG+AGG 0.614828 7_4:-9415492 None:intergenic
GAAAATGAGCATAACAACAT+GGG 0.616863 7_4:+9418183 Msa1139240:CDS
TGGAAGCAGCAGCAATGCCA+TGG 0.624675 7_4:+9418007 Msa1139240:CDS
ATATGTCCTAGAATTGGGAA+TGG 0.624908 7_4:-9415098 None:intergenic
GCATGTTTCATTACACATTG+CGG 0.625194 7_4:+9418486 Msa1139240:CDS
GGAAAATGAGCATAACAACA+TGG 0.627388 7_4:+9418182 Msa1139240:CDS
AGACATATATTTGTGATGTG+TGG 0.627498 7_4:+9418589 Msa1139240:CDS
TGGCGAAGAACAAAGCAGAA+GGG 0.630210 7_4:+9418739 Msa1139240:CDS
AATTTAGTATCTCTCCCAGA+TGG 0.632937 7_4:+9415263 Msa1139240:CDS
GTATGAATTTAGGAGAGTGG+TGG 0.634855 7_4:+9418082 Msa1139240:CDS
TCATGAGCAAGGAAAAGTCA+AGG 0.658497 7_4:+9415229 Msa1139240:CDS
TGAAACATGCTATTGAAGGG+TGG 0.659053 7_4:-9418473 None:intergenic
TATAGAAAGTGTGTGTAATG+GGG 0.659187 7_4:+9418521 Msa1139240:CDS
GGAATTATAGATCCTCAAAG+TGG 0.659691 7_4:+9415545 Msa1139240:CDS
TAATGAAACATGCTATTGAA+GGG 0.664013 7_4:-9418476 None:intergenic
ACATATATAACAGATTTAGG+TGG 0.666909 7_4:-9418255 None:intergenic
GAGTATTTCGATGAACAAGT+GGG 0.675174 7_4:-9418903 None:intergenic
GCATTACCTAAGTTATACCA+TGG 0.676643 7_4:-9418024 None:intergenic
GCGAAGAACAAAGCAGAAGG+GGG 0.697477 7_4:+9418741 Msa1139240:CDS
TATCAAGATCTAAGGCTCAG+TGG 0.714925 7_4:-9418965 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAATAATACTAACA+TGG + chr7_4:9416403-9416422 Msa1139240:intron 10.0%
!!! TTTTTTCAAAATCAAATTTT+TGG + chr7_4:9416825-9416844 Msa1139240:intron 10.0%
!!! TTTTTAGATTAAAAAAACAT+GGG - chr7_4:9416888-9416907 None:intergenic 10.0%
!!! TTTTTTAGATTAAAAAAACA+TGG - chr7_4:9416889-9416908 None:intergenic 10.0%
!!! TATAATTATTTTGATACTTT+TGG - chr7_4:9417088-9417107 None:intergenic 10.0%
!! AATAAAAAATATGAATAAAC+AGG - chr7_4:9418930-9418949 None:intergenic 10.0%
!! TATAATTGTCACAAAAAATA+TGG + chr7_4:9415412-9415431 Msa1139240:CDS 15.0%
!! ATAATTGTCACAAAAAATAT+GGG + chr7_4:9415413-9415432 Msa1139240:CDS 15.0%
!! TTAAACATGTACTAATATTT+AGG - chr7_4:9416183-9416202 None:intergenic 15.0%
!!! TTATACTTAATAAAGCATTA+GGG + chr7_4:9416277-9416296 Msa1139240:intron 15.0%
!!! TTTTTTTTATCATAACACTA+AGG - chr7_4:9416562-9416581 None:intergenic 15.0%
!! AGTAATATATAACAAATTTG+TGG + chr7_4:9416603-9416622 Msa1139240:intron 15.0%
!! GTAATATATAACAAATTTGT+GGG + chr7_4:9416604-9416623 Msa1139240:intron 15.0%
!! TTCTAAGTTTAAAAATTAGA+AGG - chr7_4:9416667-9416686 None:intergenic 15.0%
!! CAACTTCAATAAAAAATAAT+AGG + chr7_4:9416752-9416771 Msa1139240:intron 15.0%
!!! TTTTACATTTGTTACAATTA+TGG + chr7_4:9416856-9416875 Msa1139240:intron 15.0%
!! AATTACAACAATTATGAAAA+CGG + chr7_4:9416997-9417016 Msa1139240:intron 15.0%
!!! AAAGTTTGATTTTAAAAAAG+AGG + chr7_4:9417029-9417048 Msa1139240:intron 15.0%
!!! AAGTTTGATTTTAAAAAAGA+GGG + chr7_4:9417030-9417049 Msa1139240:intron 15.0%
!! ATTTAAACAAGTTTATCAAT+TGG + chr7_4:9418769-9418788 Msa1139240:CDS 15.0%
!! TTTAAACAAGTTTATCAATT+GGG + chr7_4:9418770-9418789 Msa1139240:CDS 15.0%
!!! TTTTTATTTCCATAGATTAT+CGG + chr7_4:9418942-9418961 Msa1139240:three_prime_UTR 15.0%
!! TTAATACTGAAAGTAAACTA+TGG - chr7_4:9415774-9415793 None:intergenic 20.0%
!! TATTCACAAATATCTCTATA+TGG - chr7_4:9415865-9415884 None:intergenic 20.0%
!! AACATAATAAAGTGATATCA+TGG + chr7_4:9415929-9415948 Msa1139240:intron 20.0%
!!! TAGGACTAATTTTTTTTTGT+TGG - chr7_4:9416164-9416183 None:intergenic 20.0%
!!! CTTATACTTAATAAAGCATT+AGG + chr7_4:9416276-9416295 Msa1139240:intron 20.0%
!!! AGTATTTTTCTTTTATTGAG+AGG + chr7_4:9416300-9416319 Msa1139240:intron 20.0%
!! TCAAAAGAATCTTATATTCA+AGG + chr7_4:9416508-9416527 Msa1139240:intron 20.0%
!! CTTTGCATAAAATAAGTTTA+GGG + chr7_4:9416729-9416748 Msa1139240:intron 20.0%
!!! TAATAGGATTAACTGTATTT+TGG + chr7_4:9416768-9416787 Msa1139240:intron 20.0%
!! TGTAACAAATGTAAAAATAG+AGG - chr7_4:9416852-9416871 None:intergenic 20.0%
!!! AGAAATTAAATAGTCACTTT+TGG - chr7_4:9416950-9416969 None:intergenic 20.0%
!!! AAAGTGACTATTTAATTTCT+AGG + chr7_4:9416950-9416969 Msa1139240:intron 20.0%
!!! AAGTGACTATTTAATTTCTA+GGG + chr7_4:9416951-9416970 Msa1139240:intron 20.0%
!!! AAAAAAGTGTCAATAAATGA+AGG + chr7_4:9417155-9417174 Msa1139240:intron 20.0%
!! ATGATAGGATACTTAAAATA+AGG + chr7_4:9417534-9417553 Msa1139240:intron 20.0%
!! GAAACATATATAACAGATTT+AGG - chr7_4:9418261-9418280 None:intergenic 20.0%
!! TCTGTTATATATGTTTCATT+TGG + chr7_4:9418264-9418283 Msa1139240:CDS 20.0%
!!! ATAAGTTGATCACTAAAAAA+TGG - chr7_4:9418564-9418583 None:intergenic 20.0%
!!! TGAAAATGGATTAATAACAA+AGG + chr7_4:9418638-9418657 Msa1139240:CDS 20.0%
!!! ATCTTTGAAATTAATGACAA+TGG + chr7_4:9418716-9418735 Msa1139240:CDS 20.0%
! ATGAAGACAACTTCAATTAT+TGG + chr7_4:9415206-9415225 Msa1139240:CDS 25.0%
! TTTATCTCTTCTATGAGTTT+AGG - chr7_4:9415365-9415384 None:intergenic 25.0%
!!! ATTGGTTTCTTTTAACTCTA+TGG + chr7_4:9415505-9415524 Msa1139240:CDS 25.0%
! AAAAAATTCTTACCACTTTG+AGG - chr7_4:9415560-9415579 None:intergenic 25.0%
!!! TGTACTTTTTTTGTTAAAGG+TGG - chr7_4:9415604-9415623 None:intergenic 25.0%
!!! GCTTGTACTTTTTTTGTTAA+AGG - chr7_4:9415607-9415626 None:intergenic 25.0%
! TAATGGTTATGAATCAAATG+GGG - chr7_4:9415645-9415664 None:intergenic 25.0%
! CTAATGGTTATGAATCAAAT+GGG - chr7_4:9415646-9415665 None:intergenic 25.0%
! ACTAATGGTTATGAATCAAA+TGG - chr7_4:9415647-9415666 None:intergenic 25.0%
! ATCCTATTATATGTTTCCTA+TGG + chr7_4:9415684-9415703 Msa1139240:intron 25.0%
! CAATAAATGAATTAGACCAT+AGG - chr7_4:9415703-9415722 None:intergenic 25.0%
! CTATGGTCTAATTCATTTAT+TGG + chr7_4:9415701-9415720 Msa1139240:intron 25.0%
! ATGACAAGATAATTAATGCT+TGG - chr7_4:9415745-9415764 None:intergenic 25.0%
!!! GATTTAATTTGTATGCACTA+TGG + chr7_4:9415800-9415819 Msa1139240:intron 25.0%
!! ATATCATGGTATGATTTTGT+TGG + chr7_4:9415943-9415962 Msa1139240:intron 25.0%
!!! TAATTTTTTTTTGTTGGCTC+GGG - chr7_4:9416158-9416177 None:intergenic 25.0%
!!! CTAATTTTTTTTTGTTGGCT+CGG - chr7_4:9416159-9416178 None:intergenic 25.0%
! AAACATATTAGTAGTGTTCT+AGG + chr7_4:9416427-9416446 Msa1139240:intron 25.0%
! AAGAATCTTATATTCAAGGA+AGG + chr7_4:9416512-9416531 Msa1139240:intron 25.0%
! TAATAATCACTATAGCTCAA+TGG + chr7_4:9416636-9416655 Msa1139240:intron 25.0%
! GCTTTGCATAAAATAAGTTT+AGG + chr7_4:9416728-9416747 Msa1139240:intron 25.0%
!!! AGACCAAAATACATCTTTTT+TGG + chr7_4:9416922-9416941 Msa1139240:intron 25.0%
!!! AATTTCTAGGGCAAAAAATA+TGG + chr7_4:9416963-9416982 Msa1139240:intron 25.0%
! GTATAATAAGTAGTGTGTAT+TGG + chr7_4:9417127-9417146 Msa1139240:intron 25.0%
!!! TAAAATAAGGAGTACTTATG+TGG + chr7_4:9417547-9417566 Msa1139240:intron 25.0%
!!! CATTAGATCCTTTTTGATTA+AGG - chr7_4:9417614-9417633 None:intergenic 25.0%
! AATCAAAAAGGATCTAATGT+AGG + chr7_4:9417615-9417634 Msa1139240:intron 25.0%
! ATCAAAAAGGATCTAATGTA+GGG + chr7_4:9417616-9417635 Msa1139240:intron 25.0%
!!! TTCTTCATTGATTCATTATG+AGG - chr7_4:9417705-9417724 None:intergenic 25.0%
!! TTATTTCCTTATTTAGTGCT+TGG + chr7_4:9417735-9417754 Msa1139240:intron 25.0%
!!! CAAGTTTTAGCTTCTTATTT+TGG - chr7_4:9417884-9417903 None:intergenic 25.0%
!! GTTGTTTATGAACTGAATTT+TGG + chr7_4:9417927-9417946 Msa1139240:intron 25.0%
!!! AACTGAATTTTGGAATTTTC+AGG + chr7_4:9417937-9417956 Msa1139240:intron 25.0%
!! TTATGCTCATTTTCCATTAA+TGG - chr7_4:9418177-9418196 None:intergenic 25.0%
! ACATATATAACAGATTTAGG+TGG - chr7_4:9418258-9418277 None:intergenic 25.0%
!!! AATTCAAAGAATTAGCTCTA+GGG + chr7_4:9418313-9418332 Msa1139240:CDS 25.0%
! TAATGAAACATGCTATTGAA+GGG - chr7_4:9418479-9418498 None:intergenic 25.0%
! GGATTTGAAAAAGATGAAAA+TGG + chr7_4:9418624-9418643 Msa1139240:CDS 25.0%
!! TTTGAAATTAATGACAATGG+TGG + chr7_4:9418719-9418738 Msa1139240:CDS 25.0%
! AATAGGAATATTCAAACTTG+TGG + chr7_4:9418799-9418818 Msa1139240:exon 25.0%
GTAGAAGTGGTGTAAATTAT+TGG - chr7_4:9415038-9415057 None:intergenic 30.0%
ATGGTATTGCAAGAAAATGT+GGG - chr7_4:9415082-9415101 None:intergenic 30.0%
AATGGTATTGCAAGAAAATG+TGG - chr7_4:9415083-9415102 None:intergenic 30.0%
GATTCATATGTCCTAGAATT+GGG - chr7_4:9415106-9415125 None:intergenic 30.0%
AACGTGAGAAAATTGCATAA+GGG - chr7_4:9415129-9415148 None:intergenic 30.0%
AAACGTGAGAAAATTGCATA+AGG - chr7_4:9415130-9415149 None:intergenic 30.0%
! TATGCAATTTTCTCACGTTT+TGG + chr7_4:9415130-9415149 Msa1139240:CDS 30.0%
! ACATCTTTTCTATCATCTTG+AGG - chr7_4:9415296-9415315 None:intergenic 30.0%
TCAAGATGATAGAAAAGATG+TGG + chr7_4:9415295-9415314 Msa1139240:CDS 30.0%
TCTTGTGGACAAAATAACTT+TGG - chr7_4:9415321-9415340 None:intergenic 30.0%
TTGTCACAAAAAATATGGGT+TGG + chr7_4:9415417-9415436 Msa1139240:CDS 30.0%
TGTCACAAAAAATATGGGTT+GGG + chr7_4:9415418-9415437 Msa1139240:CDS 30.0%
AGTACAAGCAATTCTTAACA+TGG + chr7_4:9415618-9415637 Msa1139240:intron 30.0%
GATGCAGAATAAACAACTAA+TGG - chr7_4:9415662-9415681 None:intergenic 30.0%
GACCATAGGAAACATATAAT+AGG - chr7_4:9415689-9415708 None:intergenic 30.0%
TAATGCTTGGTTCATTATTG+AGG - chr7_4:9415732-9415751 None:intergenic 30.0%
AAATCAAGAAACGTGTTAGA+CGG + chr7_4:9415976-9415995 Msa1139240:intron 30.0%
GGTCTCTTCTAATTTAACTA+AGG + chr7_4:9416051-9416070 Msa1139240:intron 30.0%
AATCTTATATTCAAGGAAGG+AGG + chr7_4:9416515-9416534 Msa1139240:intron 30.0%
! TTTTCACGAGCATTATAACA+GGG - chr7_4:9416797-9416816 None:intergenic 30.0%
! ATTTTCACGAGCATTATAAC+AGG - chr7_4:9416798-9416817 None:intergenic 30.0%
! GCACCAAAAAAGATGTATTT+TGG - chr7_4:9416928-9416947 None:intergenic 30.0%
!! ATCATTGTTTTGCCTCTTAT+AGG - chr7_4:9417210-9417229 None:intergenic 30.0%
ATAAGAGGCAAAACAATGAT+TGG + chr7_4:9417210-9417229 Msa1139240:intron 30.0%
GCAAAACAATGATTGGTATT+TGG + chr7_4:9417217-9417236 Msa1139240:intron 30.0%
AGAGTAACGATTTAAGTCTT+TGG + chr7_4:9417290-9417309 Msa1139240:intron 30.0%
ACGATTTAAGTCTTTGGATT+AGG + chr7_4:9417296-9417315 Msa1139240:intron 30.0%
TAAGAACACCAACTCTAATT+GGG + chr7_4:9417347-9417366 Msa1139240:intron 30.0%
! TCTGTAAGGGTTTCTAAAAA+TGG - chr7_4:9417407-9417426 None:intergenic 30.0%
!! TTTTTAGAAACCCTTACAGA+TGG + chr7_4:9417407-9417426 Msa1139240:intron 30.0%
!! TTTTAGAAACCCTTACAGAT+GGG + chr7_4:9417408-9417427 Msa1139240:intron 30.0%
! TTGCATACGTTGATTATGAT+AGG + chr7_4:9417519-9417538 Msa1139240:intron 30.0%
CGTATTCACCTTAATCAAAA+AGG + chr7_4:9417603-9417622 Msa1139240:intron 30.0%
GGAGTATAATTGAGTATGTT+AGG + chr7_4:9417637-9417656 Msa1139240:intron 30.0%
ATATCACCAAGCACTAAATA+AGG - chr7_4:9417744-9417763 None:intergenic 30.0%
! AATTTGAGTTCTAGTGTGAT+AGG - chr7_4:9417773-9417792 None:intergenic 30.0%
! TTTTGCAAAGTTGAGATACA+AGG - chr7_4:9417856-9417875 None:intergenic 30.0%
GTATCTCAACTTTGCAAAAT+AGG + chr7_4:9417857-9417876 Msa1139240:intron 30.0%
AAGCTAAAACTTGTACCATT+TGG + chr7_4:9417891-9417910 Msa1139240:intron 30.0%
TTCTTCAAATTTGCCTATGA+TGG + chr7_4:9417987-9418006 Msa1139240:CDS 30.0%
GAGATGCAAAGTATGAATTT+AGG + chr7_4:9418072-9418091 Msa1139240:CDS 30.0%
AAAGTATGAATTTAGGAGAG+TGG + chr7_4:9418079-9418098 Msa1139240:CDS 30.0%
TCACCAAAATTTCTACCAAT+TGG + chr7_4:9418150-9418169 Msa1139240:CDS 30.0%
!! TTTTCCATTAATGGACCAAT+TGG - chr7_4:9418168-9418187 None:intergenic 30.0%
GAAAATGAGCATAACAACAT+GGG + chr7_4:9418183-9418202 Msa1139240:CDS 30.0%
AAGATGAAACATGCATAGAA+TGG + chr7_4:9418220-9418239 Msa1139240:CDS 30.0%
GCTAATTCTTTGAATTGGTT+TGG - chr7_4:9418309-9418328 None:intergenic 30.0%
CTAGAGCTAATTCTTTGAAT+TGG - chr7_4:9418314-9418333 None:intergenic 30.0%
! CAATTCAAAGAATTAGCTCT+AGG + chr7_4:9418312-9418331 Msa1139240:CDS 30.0%
GTAATGAAACATGCTATTGA+AGG - chr7_4:9418480-9418499 None:intergenic 30.0%
! ACTATAGAAAGTGTGTGTAA+TGG + chr7_4:9418519-9418538 Msa1139240:CDS 30.0%
! CTATAGAAAGTGTGTGTAAT+GGG + chr7_4:9418520-9418539 Msa1139240:CDS 30.0%
! TATAGAAAGTGTGTGTAATG+GGG + chr7_4:9418521-9418540 Msa1139240:CDS 30.0%
AAAAATGGCAAACACAACAA+AGG - chr7_4:9418549-9418568 None:intergenic 30.0%
AGACATATATTTGTGATGTG+TGG + chr7_4:9418589-9418608 Msa1139240:CDS 30.0%
ATATATTTGTGATGTGTGGA+AGG + chr7_4:9418593-9418612 Msa1139240:CDS 30.0%
!! ATTGAGTTTTAATCGCTACT+TGG + chr7_4:9418851-9418870 Msa1139240:three_prime_UTR 30.0%
AATGTGGGTTTCCCATTATA+GGG - chr7_4:9415067-9415086 None:intergenic 35.0%
AAATGTGGGTTTCCCATTAT+AGG - chr7_4:9415068-9415087 None:intergenic 35.0%
ATATGTCCTAGAATTGGGAA+TGG - chr7_4:9415101-9415120 None:intergenic 35.0%
GGATTCATATGTCCTAGAAT+TGG - chr7_4:9415107-9415126 None:intergenic 35.0%
ACGTGAGAAAATTGCATAAG+GGG - chr7_4:9415128-9415147 None:intergenic 35.0%
! AGTGATTTTGCATCCATGTT+TGG - chr7_4:9415156-9415175 None:intergenic 35.0%
TCAATTATTGGTCATGAGCA+AGG + chr7_4:9415218-9415237 Msa1139240:CDS 35.0%
AATTTAGTATCTCTCCCAGA+TGG + chr7_4:9415263-9415282 Msa1139240:CDS 35.0%
! GAATTAAAGGAGCTCTTTTC+TGG + chr7_4:9415465-9415484 Msa1139240:CDS 35.0%
GGAATTATAGATCCTCAAAG+TGG + chr7_4:9415545-9415564 Msa1139240:CDS 35.0%
! GTATGATTTTGTTGGATGCA+TGG + chr7_4:9415951-9415970 Msa1139240:intron 35.0%
AATCAAGAAACGTGTTAGAC+GGG + chr7_4:9415977-9415996 Msa1139240:intron 35.0%
! TCATCTCATCTAAGCGTTTT+TGG - chr7_4:9416027-9416046 None:intergenic 35.0%
CAAAGCAGCAAAGCAAAAAT+GGG - chr7_4:9416714-9416733 None:intergenic 35.0%
AGTGTCAATAAATGAAGGAG+CGG + chr7_4:9417160-9417179 Msa1139240:intron 35.0%
! TTTTGCCTCTTATAGGATGA+GGG - chr7_4:9417203-9417222 None:intergenic 35.0%
GTAAGAACACCAACTCTAAT+TGG + chr7_4:9417346-9417365 Msa1139240:intron 35.0%
ATTGAGAACCCAATTAGAGT+TGG - chr7_4:9417358-9417377 None:intergenic 35.0%
ATCCAATTAGAGACTAATGG+TGG - chr7_4:9417450-9417469 None:intergenic 35.0%
TGCATCCAATTAGAGACTAA+TGG - chr7_4:9417453-9417472 None:intergenic 35.0%
CTTGTATAGGTAAATGCACA+CGG - chr7_4:9417672-9417691 None:intergenic 35.0%
AGGTCATACAACACTTGTAT+AGG - chr7_4:9417685-9417704 None:intergenic 35.0%
AGTTGAATTGCTTGTTTCCT+TGG - chr7_4:9417967-9417986 None:intergenic 35.0%
GCATTACCTAAGTTATACCA+TGG - chr7_4:9418027-9418046 None:intergenic 35.0%
CATCATATGAAGGAAGAAGA+AGG - chr7_4:9418049-9418068 None:intergenic 35.0%
GCATCTCTTTCATCATATGA+AGG - chr7_4:9418059-9418078 None:intergenic 35.0%
TAACACTAGTATGGATCTTG+AGG + chr7_4:9418110-9418129 Msa1139240:CDS 35.0%
! GGACCAATTGGTAGAAATTT+TGG - chr7_4:9418156-9418175 None:intergenic 35.0%
TCTACCAATTGGTCCATTAA+TGG + chr7_4:9418161-9418180 Msa1139240:CDS 35.0%
GGAAAATGAGCATAACAACA+TGG + chr7_4:9418182-9418201 Msa1139240:CDS 35.0%
ATAACAACATGGGATCTTTG+TGG + chr7_4:9418193-9418212 Msa1139240:CDS 35.0%
! TCCTTAAGAGACCTTTTCTT+TGG + chr7_4:9418343-9418362 Msa1139240:CDS 35.0%
! CCTTAAGAGACCTTTTCTTT+GGG + chr7_4:9418344-9418363 Msa1139240:CDS 35.0%
TTACGTACAACCCAAAGAAA+AGG - chr7_4:9418357-9418376 None:intergenic 35.0%
! TTGGGTTGTACGTAAAGATA+AGG + chr7_4:9418362-9418381 Msa1139240:CDS 35.0%
TGGGTTGTACGTAAAGATAA+GGG + chr7_4:9418363-9418382 Msa1139240:CDS 35.0%
GACTTCCTTTGAATTCACTT+GGG - chr7_4:9418410-9418429 None:intergenic 35.0%
TGACTTCCTTTGAATTCACT+TGG - chr7_4:9418411-9418430 None:intergenic 35.0%
AGTGAATTCAAAGGAAGTCA+AGG + chr7_4:9418411-9418430 Msa1139240:CDS 35.0%
GGAAGTCAAGGTAAAATTGT+AGG + chr7_4:9418423-9418442 Msa1139240:CDS 35.0%
GTCAAGGTAAAATTGTAGGT+TGG + chr7_4:9418427-9418446 Msa1139240:CDS 35.0%
! TGGCTCAAAATCTTCTTTTG+TGG - chr7_4:9418456-9418475 None:intergenic 35.0%
GCATGTTTCATTACACATTG+CGG + chr7_4:9418486-9418505 Msa1139240:CDS 35.0%
GGAAGAGATAAAGAAGAAGA+TGG + chr7_4:9418659-9418678 Msa1139240:CDS 35.0%
GATGAATTGCTTGAAGATGA+AGG + chr7_4:9418681-9418700 Msa1139240:CDS 35.0%
CAAGTTTATCAATTGGGCAA+AGG + chr7_4:9418776-9418795 Msa1139240:CDS 35.0%
TATCAATTGGGCAAAGGAAT+AGG + chr7_4:9418782-9418801 Msa1139240:CDS 35.0%
GAGTATTTCGATGAACAAGT+GGG - chr7_4:9418906-9418925 None:intergenic 35.0%
TTCTACCAGCTTCCCTATAA+TGG + chr7_4:9415052-9415071 Msa1139240:exon 40.0%
TCTACCAGCTTCCCTATAAT+GGG + chr7_4:9415053-9415072 Msa1139240:exon 40.0%
GCAATACCATTCCCAATTCT+AGG + chr7_4:9415092-9415111 Msa1139240:CDS 40.0%
TCATGAGCAAGGAAAAGTCA+AGG + chr7_4:9415229-9415248 Msa1139240:CDS 40.0%
!! AAAAAATATGGGTTGGGCCT+TGG + chr7_4:9415424-9415443 Msa1139240:CDS 40.0%
TTGGAAGTTGCTCATCAGTT+GGG + chr7_4:9415443-9415462 Msa1139240:CDS 40.0%
GCTCATCAGTTGGGAATTAA+AGG + chr7_4:9415452-9415471 Msa1139240:CDS 40.0%
AGAAACCAATGAAGTTGCTG+AGG - chr7_4:9415495-9415514 None:intergenic 40.0%
!!! CTCTATGGAGAGTTTTGTTG+AGG + chr7_4:9415520-9415539 Msa1139240:CDS 40.0%
!!! ATGGAGAGTTTTGTTGAGGA+AGG + chr7_4:9415524-9415543 Msa1139240:CDS 40.0%
ATCAAGAAACGTGTTAGACG+GGG + chr7_4:9415978-9415997 Msa1139240:intron 40.0%
CAGCAGCGTTAAAACTCTTA+GGG + chr7_4:9416101-9416120 Msa1139240:intron 40.0%
GCAAAGCAGCAAAGCAAAAA+TGG - chr7_4:9416715-9416734 None:intergenic 40.0%
TTTGCCTCTTATAGGATGAG+GGG - chr7_4:9417202-9417221 None:intergenic 40.0%
! GTTTTGCCTCTTATAGGATG+AGG - chr7_4:9417204-9417223 None:intergenic 40.0%
!! CTCTACTAGAGAGTACCAAA+GGG - chr7_4:9417274-9417293 None:intergenic 40.0%
!! ACTCTACTAGAGAGTACCAA+AGG - chr7_4:9417275-9417294 None:intergenic 40.0%
! TGCCACCATTAGTCTCTAAT+TGG + chr7_4:9417445-9417464 Msa1139240:intron 40.0%
GTGTGGTTATCGCTATTACA+GGG - chr7_4:9417796-9417815 None:intergenic 40.0%
CTGTAATAGCGATAACCACA+CGG + chr7_4:9417795-9417814 Msa1139240:intron 40.0%
! ATTTAGAATGTGTGACCGTG+TGG - chr7_4:9417813-9417832 None:intergenic 40.0%
ACTGTTCGATCTTGACCAAA+TGG - chr7_4:9417909-9417928 None:intergenic 40.0%
!!! TGGAATTTTCAGGTCTTCCA+AGG + chr7_4:9417947-9417966 Msa1139240:intron 40.0%
GCAATGCCATGGTATAACTT+AGG + chr7_4:9418018-9418037 Msa1139240:CDS 40.0%
GTATGAATTTAGGAGAGTGG+TGG + chr7_4:9418082-9418101 Msa1139240:CDS 40.0%
!! GTGGCTTTGTAACACTAGTA+TGG + chr7_4:9418101-9418120 Msa1139240:CDS 40.0%
CCCAAAGAAAAGGTCTCTTA+AGG - chr7_4:9418347-9418366 None:intergenic 40.0%
GCATACCCAAGTGAATTCAA+AGG + chr7_4:9418402-9418421 Msa1139240:CDS 40.0%
TGAAACATGCTATTGAAGGG+TGG - chr7_4:9418476-9418495 None:intergenic 40.0%
GTTTCATTACACATTGCGGT+TGG + chr7_4:9418490-9418509 Msa1139240:CDS 40.0%
ATTTGTGATGTGTGGAAGGT+TGG + chr7_4:9418597-9418616 Msa1139240:CDS 40.0%
AATCGCTACTTGGTTAGACA+TGG + chr7_4:9418861-9418880 Msa1139240:three_prime_UTR 40.0%
CGAGTATTTCGATGAACAAG+TGG - chr7_4:9418907-9418926 None:intergenic 40.0%
TATAGGGAAGCTGGTAGAAG+TGG - chr7_4:9415051-9415070 None:intergenic 45.0%
GTTTCCCATTATAGGGAAGC+TGG - chr7_4:9415060-9415079 None:intergenic 45.0%
!! TCTCACGTTTTGGCCAAACA+TGG + chr7_4:9415140-9415159 Msa1139240:CDS 45.0%
TGAGCTCATAGTGGTTCTTG+TGG - chr7_4:9415336-9415355 None:intergenic 45.0%
!! AGGAAGCATTGAGCTCATAG+TGG - chr7_4:9415345-9415364 None:intergenic 45.0%
CAACTGATGAGCAACTTCCA+AGG - chr7_4:9415444-9415463 None:intergenic 45.0%
CTTGGAAGTTGCTCATCAGT+TGG + chr7_4:9415442-9415461 Msa1139240:CDS 45.0%
ACGCTTAGATGAGATGACGA+TGG + chr7_4:9416030-9416049 Msa1139240:intron 45.0%
GCAGCAGCGTTAAAACTCTT+AGG + chr7_4:9416100-9416119 Msa1139240:intron 45.0%
CACTTGAACCTGCTCTTCTA+GGG - chr7_4:9416454-9416473 None:intergenic 45.0%
TCACTTGAACCTGCTCTTCT+AGG - chr7_4:9416455-9416474 None:intergenic 45.0%
AGAAGAGCAGGTTCAAGTGA+TGG + chr7_4:9416455-9416474 Msa1139240:intron 45.0%
AGCAGCAAAGCAAAAATGGG+AGG - chr7_4:9416711-9416730 None:intergenic 45.0%
TCACGAGCATTATAACAGGG+AGG - chr7_4:9416794-9416813 None:intergenic 45.0%
TAAATGAAGGAGCGGATGAG+AGG + chr7_4:9417168-9417187 Msa1139240:intron 45.0%
AGACTAATGGTGGCAAGCAT+GGG - chr7_4:9417440-9417459 None:intergenic 45.0%
CGTGTGGTTATCGCTATTAC+AGG - chr7_4:9417797-9417816 None:intergenic 45.0%
! ATTGCTGCTGCTTCCATCAT+AGG - chr7_4:9418003-9418022 None:intergenic 45.0%
TGATGTGTGGAAGGTTGGAT+TGG + chr7_4:9418602-9418621 Msa1139240:CDS 45.0%
GATGTGTGGAAGGTTGGATT+GGG + chr7_4:9418603-9418622 Msa1139240:CDS 45.0%
TGGCGAAGAACAAAGCAGAA+GGG + chr7_4:9418739-9418758 Msa1139240:CDS 45.0%
TGGTTAGACATGGTTCGTCA+TGG + chr7_4:9418871-9418890 Msa1139240:three_prime_UTR 45.0%
!!! ATTTTTCTTATATTTAATAT+CGG - chr7_4:9416223-9416242 None:intergenic 5.0%
CTTGAGGACTCACACCATCT+GGG - chr7_4:9415280-9415299 None:intergenic 50.0%
TCTTGAGGACTCACACCATC+TGG - chr7_4:9415281-9415300 None:intergenic 50.0%
ACCAATGAAGTTGCTGAGGC+TGG - chr7_4:9415491-9415510 None:intergenic 50.0%
GGAGAGTTAGCCACCCATTT+GGG + chr7_4:9416122-9416141 Msa1139240:intron 50.0%
!! TTCTAGGACCCTAGAAGAGC+AGG + chr7_4:9416443-9416462 Msa1139240:intron 50.0%
AGAGCAGGTTCAAGTGATGG+AGG + chr7_4:9416458-9416477 Msa1139240:intron 50.0%
CCTCTTATAGGATGAGGGGA+AGG - chr7_4:9417198-9417217 None:intergenic 50.0%
CCTTCCCCTCATCCTATAAG+AGG + chr7_4:9417195-9417214 Msa1139240:intron 50.0%
GAAGTCTCTTCCTCTCCCTT+TGG + chr7_4:9417256-9417275 Msa1139240:intron 50.0%
!! CTAGAGAGTACCAAAGGGAG+AGG - chr7_4:9417269-9417288 None:intergenic 50.0%
! GGGCTCTAACCCATCTGTAA+GGG - chr7_4:9417420-9417439 None:intergenic 50.0%
! TGGGCTCTAACCCATCTGTA+AGG - chr7_4:9417421-9417440 None:intergenic 50.0%
GAGACTAATGGTGGCAAGCA+TGG - chr7_4:9417441-9417460 None:intergenic 50.0%
GTGGCGAAGAACAAAGCAGA+AGG + chr7_4:9418738-9418757 Msa1139240:CDS 50.0%
GGCGAAGAACAAAGCAGAAG+GGG + chr7_4:9418740-9418759 Msa1139240:CDS 50.0%
GCGAAGAACAAAGCAGAAGG+GGG + chr7_4:9418741-9418760 Msa1139240:CDS 50.0%
GCTCAGTGGCCGATAATCTA+TGG - chr7_4:9418954-9418973 None:intergenic 50.0%
GCCAGCCTCAGCAACTTCAT+TGG + chr7_4:9415487-9415506 Msa1139240:CDS 55.0%
GGGAGAGTTAGCCACCCATT+TGG + chr7_4:9416121-9416140 Msa1139240:intron 55.0%
CCTTGTGAGACCCAAATGGG+TGG - chr7_4:9416135-9416154 None:intergenic 55.0%
CCACCCATTTGGGTCTCACA+AGG + chr7_4:9416132-9416151 Msa1139240:intron 55.0%
! GGGCCTTGTGAGACCCAAAT+GGG - chr7_4:9416138-9416157 None:intergenic 55.0%
TGGAAGCAGCAGCAATGCCA+TGG + chr7_4:9418007-9418026 Msa1139240:CDS 55.0%
! CGGGCCTTGTGAGACCCAAA+TGG - chr7_4:9416139-9416158 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 9414995 9418985 9414995 ID=Msa1139240;Name=Msa1139240
chr7_4 mRNA 9414995 9418985 9414995 ID=Msa1139240-mRNA-1;Parent=Msa1139240;Name=Msa1139240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=76|1|1|1|1|1|2|182|446
chr7_4 exon 9414995 9415566 9414995 ID=Msa1139240-mRNA-1:exon:2439;Parent=Msa1139240-mRNA-1
chr7_4 exon 9417959 9418985 9417959 ID=Msa1139240-mRNA-1:exon:2440;Parent=Msa1139240-mRNA-1
chr7_4 five_prime_UTR 9414995 9415070 9414995 ID=Msa1139240-mRNA-1:five_prime_utr;Parent=Msa1139240-mRNA-1
chr7_4 CDS 9415071 9415566 9415071 ID=Msa1139240-mRNA-1:cds;Parent=Msa1139240-mRNA-1
chr7_4 CDS 9417959 9418803 9417959 ID=Msa1139240-mRNA-1:cds;Parent=Msa1139240-mRNA-1
chr7_4 three_prime_UTR 9418804 9418985 9418804 ID=Msa1139240-mRNA-1:three_prime_utr;Parent=Msa1139240-mRNA-1
Gene Sequence

>Msa1139240

ATGGGAAACCCACATTTTCTTGCAATACCATTCCCAATTCTAGGACATATGAATCCCCTTATGCAATTTTCTCACGTTTTGGCCAAACATGGATGCAAAATCACTTTCTTGACTTCAGATGAAAATTACAATAAAATGAAGACAACTTCAATTATTGGTCATGAGCAAGGAAAAGTCAAGGAATCAAACATAAATTTAGTATCTCTCCCAGATGGTGTGAGTCCTCAAGATGATAGAAAAGATGTGGCCAAAGTTATTTTGTCCACAAGAACCACTATGAGCTCAATGCTTCCTAAACTCATAGAAGAGATAAATGCTCTTGATAGTGACAAGATTTCTTGTATAATTGTCACAAAAAATATGGGTTGGGCCTTGGAAGTTGCTCATCAGTTGGGAATTAAAGGAGCTCTTTTCTGGCCAGCCTCAGCAACTTCATTGGTTTCTTTTAACTCTATGGAGAGTTTTGTTGAGGAAGGAATTATAGATCCTCAAAGTGGTCTTCCAAGGAAACAAGCAATTCAACTTTCTTCAAATTTGCCTATGATGGAAGCAGCAGCAATGCCATGGTATAACTTAGGTAATGCCTTCTTCTTCCTTCATATGATGAAAGAGATGCAAAGTATGAATTTAGGAGAGTGGTGGCTTTGTAACACTAGTATGGATCTTGAGGCTGAAGCAGTTTCTTTATCACCAAAATTTCTACCAATTGGTCCATTAATGGAAAATGAGCATAACAACATGGGATCTTTGTGGCAAGAAGATGAAACATGCATAGAATGGTTAGATCAATATCCACCTAAATCTGTTATATATGTTTCATTTGGTAGTTTGATATCAATTTGTCCAAACCAATTCAAAGAATTAGCTCTAGGGCTTGATCTCCTTAAGAGACCTTTTCTTTGGGTTGTACGTAAAGATAAGGGCAATGAGACAAAATATGCATACCCAAGTGAATTCAAAGGAAGTCAAGGTAAAATTGTAGGTTGGTCACCACAAAAGAAGATTTTGAGCCACCCTTCAATAGCATGTTTCATTACACATTGCGGTTGGAATTCTACTATAGAAAGTGTGTGTAATGGGGTACCTTTGTTGTGTTTGCCATTTTTTAGTGATCAACTTATGAACAAGACATATATTTGTGATGTGTGGAAGGTTGGATTGGGATTTGAAAAAGATGAAAATGGATTAATAACAAAGGAAGAGATAAAGAAGAAGATGGATGAATTGCTTGAAGATGAAGGAATTAAAGAAAGATCTTTGAAATTAATGACAATGGTGGCGAAGAACAAAGCAGAAGGGGGTAAGAATTTAAACAAGTTTATCAATTGGGCAAAGGAATAG

Protein sequence

>Msa1139240

MGNPHFLAIPFPILGHMNPLMQFSHVLAKHGCKITFLTSDENYNKMKTTSIIGHEQGKVKESNINLVSLPDGVSPQDDRKDVAKVILSTRTTMSSMLPKLIEEINALDSDKISCIIVTKNMGWALEVAHQLGIKGALFWPASATSLVSFNSMESFVEEGIIDPQSGLPRKQAIQLSSNLPMMEAAAMPWYNLGNAFFFLHMMKEMQSMNLGEWWLCNTSMDLEAEAVSLSPKFLPIGPLMENEHNNMGSLWQEDETCIEWLDQYPPKSVIYVSFGSLISICPNQFKELALGLDLLKRPFLWVVRKDKGNETKYAYPSEFKGSQGKIVGWSPQKKILSHPSIACFITHCGWNSTIESVCNGVPLLCLPFFSDQLMNKTYICDVWKVGLGFEKDENGLITKEEIKKKMDELLEDEGIKERSLKLMTMVAKNKAEGGKNLNKFINWAKE*