AlfalfaGEDB | Msa0670670

M. sativa cultivar zhongmu-4 / Msa0670670

KEGG: -
GO: -
PFAM: PF01439.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670670	AAF04584.1	100.000	75	0	0	1	75	1	75	2.11e-44	147

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670670	sp\|P43399\|MT1_TRIRP	88.000	75	9	0	1	75	1	75	3.21e-41	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670670	Q9SP23	100.000	75	0	0	1	75	1	75	1.01e-44	147

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0631980	Msa0670670	0.884382	2.011738e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670670	MtrunA17_Chr4g0009811	94.667	75	4	0	1	75	1	75	2.75e-46	142
Msa0670670	MtrunA17_Chr4g0009821	90.667	75	7	0	1	75	1	75	4.97e-43	134
Msa0670670	MtrunA17_Chr7g0238571	50.725	69	31	2	8	75	12	78	5.49e-11	52.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 29 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCAGGTCTAGTGGGTT+GGG	0.444520	4_4:+13262618	Msa0670670:CDS
AACCACAGAAACCGTGATTC+TGG	0.293571	4_4:+13262656	Msa0670670:CDS
AATATGTCTGGCTGTAATTG+TGG	0.549280	4_4:+13261235	Msa0670670:exon
ACCACAGAAACCGTGATTCT+GGG	0.490783	4_4:+13262657	Msa0670670:CDS
AGAATAATATAAAGTGGCCA+TGG	0.536779	4_4:+13262900	Msa0670670:three_prime_UTR
AGATGCAACAGCAGGTCTAG+TGG	0.608709	4_4:+13262612	Msa0670670:intron
AGCAAAGAATAATATTTGAT+TGG	0.399667	4_4:-13261188	None:intergenic
AGTGAAGTGCAACTTATGAA+AGG	0.648960	4_4:+13262787	Msa0670670:exon
AGTGGGTTGGGCTATCTCGA+AGG	0.606024	4_4:+13262630	Msa0670670:CDS
ATACACACAAATACACACAT+TGG	0.647547	4_4:-13262830	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATAAATCCAAAGACTTG+TGG	-	chr4_4:13261533-13261552	None:intergenic	30.0%
ATACACACAAATACACACAT+TGG	-	chr4_4:13262833-13262852	None:intergenic	30.0%
AGAATAATATAAAGTGGCCA+TGG	+	chr4_4:13262900-13262919	Msa0670670:three_prime_UTR	30.0%
TTGATAAATCCAAAGACTTG+TGG	-	chr4_4:13261533-13261552	None:intergenic	30.0%
ATACACACAAATACACACAT+TGG	-	chr4_4:13262833-13262852	None:intergenic	30.0%
AGAATAATATAAAGTGGCCA+TGG	+	chr4_4:13262900-13262919	Msa0670670:three_prime_UTR	30.0%
AATATGTCTGGCTGTAATTG+TGG	+	chr4_4:13261235-13261254	Msa0670670:exon	35.0%
TCTCGTGAGTTTAGATTAGT+TGG	+	chr4_4:13261699-13261718	Msa0670670:intron	35.0%
TATATATACATGCAAGGGTC+TGG	+	chr4_4:13261734-13261753	Msa0670670:intron	35.0%
ATATATACATGCAAGGGTCT+GGG	+	chr4_4:13261735-13261754	Msa0670670:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	13261162	13263048	13261162	ID=Msa0670670;Name=Msa0670670
chr4_4	mRNA	13261162	13263048	13261162	ID=Msa0670670-mRNA-1;Parent=Msa0670670;Name=Msa0670670-mRNA-1;_AED=0.27;_eAED=0.27;_QI=76\|1\|1\|1\|1\|1\|2\|257\|75
chr4_4	exon	13261162	13261287	13261162	ID=Msa0670670-mRNA-1:exon:4036;Parent=Msa0670670-mRNA-1
chr4_4	exon	13262614	13263048	13262614	ID=Msa0670670-mRNA-1:exon:4037;Parent=Msa0670670-mRNA-1
chr4_4	five_prime_UTR	13261162	13261237	13261162	ID=Msa0670670-mRNA-1:five_prime_utr;Parent=Msa0670670-mRNA-1
chr4_4	CDS	13261238	13261287	13261238	ID=Msa0670670-mRNA-1:cds;Parent=Msa0670670-mRNA-1
chr4_4	CDS	13262614	13262791	13262614	ID=Msa0670670-mRNA-1:cds;Parent=Msa0670670-mRNA-1
chr4_4	three_prime_UTR	13262792	13263048	13262792	ID=Msa0670670-mRNA-1:three_prime_utr;Parent=Msa0670670-mRNA-1

Gene Sequence	>Msa0670670 ATGTCTGGCTGTAATTGTGGAAGTAGTTGCAATTGTGGTGATAACTGCAAATGCAACAGCAGGTCTAGTGGGTTGGGCTATCTCGAAGGCGAAACCACAGAAACCGTGATTCTGGGCGTTGGTCCGGCAAAGATCCATTTTGAGGGTGCTGAAATGGGTGTTGCAGCTGAGGATGGTGGCTGCAAGTGTGGAGATAGCTGCACATGTGACCCATGCAACTGTAAGTGA
Protein sequence	>Msa0670670 MSGCNCGSSCNCGDNCKCNSRSSGLGYLEGETTETVILGVGPAKIHFEGAEMGVAAEDGGCKCGDSCTCDPCNCK*