AlfalfaGEDB | Msa0631980

M. sativa cultivar zhongmu-4 / Msa0631980

KEGG: -
GO: -
PFAM: PF01439.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631980	AAF04584.1	100.000	75	0	0	1	75	1	75	2.11e-44	147

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631980	sp\|P43399\|MT1_TRIRP	88.000	75	9	0	1	75	1	75	3.21e-41	132

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631980	Q9SP23	100.000	75	0	0	1	75	1	75	1.01e-44	147

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0631980	0.800450	1.433279e-48	-8.615850e-47
Msa0051860	Msa0631980	0.800134	1.661648e-48	-8.615850e-47
Msa0077180	Msa0631980	0.808675	2.756937e-50	-8.615850e-47
Msa0088690	Msa0631980	0.817362	3.429456e-52	-8.615850e-47
Msa0102120	Msa0631980	0.831842	1.327149e-55	-8.615850e-47
Msa0608710	Msa0631980	0.822043	2.926124e-53	-8.615850e-47
Msa0621750	Msa0631980	-0.808940	2.418819e-50	-8.615850e-47
Msa0628740	Msa0631980	0.836309	1.009201e-56	-8.615850e-47
Msa0631980	Msa0631990	0.873100	1.910321e-67	-8.615850e-47
Msa0631980	Msa0652810	0.818258	2.153219e-52	-8.615850e-47
Msa0631980	Msa0653490	0.800884	1.168799e-48	-8.615850e-47
Msa0631980	Msa0666140	0.834354	3.145913e-56	-8.615850e-47
Msa0631980	Msa0670660	0.863656	2.130069e-64	-8.615850e-47
Msa0631980	Msa0670670	0.884382	2.011738e-71	-8.615850e-47
Msa0631980	Msa0805420	0.807288	5.437355e-50	-8.615850e-47
Msa0631980	Msa0831590	0.800799	1.216352e-48	-8.615850e-47
Msa0631980	Msa0842770	0.815262	1.011840e-51	-8.615850e-47
Msa0631980	Msa0958920	0.812542	4.022463e-51	-8.615850e-47
Msa0631980	Msa0982270	0.806856	6.714530e-50	-8.615850e-47
Msa0631980	Msa1090260	0.801240	9.883516e-49	-8.615850e-47
Msa0631980	Msa1092090	0.803977	2.694119e-49	-8.615850e-47
Msa0631980	Msa1116690	0.801408	9.134128e-49	-8.615850e-47
Msa0631980	Msa1206100	0.812325	4.488457e-51	-8.615850e-47
Msa0631980	Msa1302550	0.800105	1.684376e-48	-8.615850e-47
Msa0631980	Msa1307740	0.813420	2.582710e-51	-8.615850e-47
Msa0631980	Msa1329550	0.815638	8.343023e-52	-8.615850e-47
Msa0631980	Msa1348600	0.803243	3.826461e-49	-8.615850e-47
Msa0631980	Msa1370340	0.811430	7.027831e-51	-8.615850e-47
Msa0631980	Msa1444740	0.828147	1.056606e-54	-8.615850e-47
Msa0135490	Msa0631980	0.802906	4.491786e-49	-8.615850e-47
Msa0182570	Msa0631980	0.800925	1.146412e-48	-8.615850e-47
Msa0189030	Msa0631980	0.803327	3.675573e-49	-8.615850e-47
Msa0191440	Msa0631980	0.805750	1.147980e-49	-8.615850e-47
Msa0236420	Msa0631980	0.800687	1.282134e-48	-8.615850e-47
Msa0370430	Msa0631980	0.803438	3.485225e-49	-8.615850e-47
Msa0388840	Msa0631980	0.801316	9.538833e-49	-8.615850e-47
Msa0389810	Msa0631980	0.812291	4.563733e-51	-8.615850e-47
Msa0433530	Msa0631980	0.805482	1.306877e-49	-8.615850e-47
Msa0468130	Msa0631980	0.806850	6.731268e-50	-8.615850e-47
Msa0477260	Msa0631980	0.824840	6.491025e-54	-8.615850e-47
Msa0270960	Msa0631980	0.801076	1.067711e-48	-8.615850e-47
Msa0271580	Msa0631980	0.806809	6.868459e-50	-8.615850e-47
Msa0309270	Msa0631980	0.808505	2.996968e-50	-8.615850e-47
Msa0588240	Msa0631980	0.806799	6.902612e-50	-8.615850e-47
Msa0591710	Msa0631980	0.884774	1.439163e-71	-8.615850e-47
Msa0595850	Msa0631980	0.804424	2.174758e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0631980	MtrunA17_Chr4g0009811	94.667	75	4	0	1	75	1	75	2.75e-46	142
Msa0631980	MtrunA17_Chr4g0009821	90.667	75	7	0	1	75	1	75	4.97e-43	134
Msa0631980	MtrunA17_Chr7g0238571	50.725	69	31	2	8	75	12	78	5.49e-11	52.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 29 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACAGAAACCGTGATTC+TGG	0.293571	4_3:-15522390	Msa0631980:CDS
CCATTTCAGCACCCTCAAAA+TGG	0.321140	4_3:+15522348	None:intergenic
AGCTATGGTTGCTTTGTGTT+TGG	0.396298	4_3:-15522069	Msa0631980:three_prime_UTR
CGTGATTCTGGGCGTTGGTC+CGG	0.396505	4_3:-15522378	Msa0631980:CDS
CCCTCAAAATGGATCTTTGC+CGG	0.397774	4_3:+15522359	None:intergenic
AGCAAAGAATAATATTTGAT+TGG	0.399667	4_3:+15523915	None:intergenic
AACAGCAGGTCTAGTGGGTT+GGG	0.444520	4_3:-15522428	Msa0631980:CDS
CACTTCACTTACAGTTGCAT+GGG	0.476971	4_3:+15522273	None:intergenic
CAACAGCAGGTCTAGTGGGT+TGG	0.483236	4_3:-15522429	Msa0631980:CDS
TTAATTAGAATAATATAAAG+TGG	0.488865	4_3:-15522152	Msa0631980:three_prime_UTR
ACCACAGAAACCGTGATTCT+GGG	0.490783	4_3:-15522389	Msa0631980:CDS
GCACTTCACTTACAGTTGCA+TGG	0.509517	4_3:+15522272	None:intergenic
TGCCTTGCAGATGCAACAGC+AGG	0.516088	4_3:-15522442	Msa0631980:intron
AGAATAATATAAAGTGGCCA+TGG	0.536779	4_3:-15522146	Msa0631980:three_prime_UTR
TTGTGAATATCAAATATGTC+TGG	0.542018	4_3:-15523880	Msa0631980:exon
TGTGGAAGTAGTTGCAATTG+TGG	0.548819	4_3:-15523850	Msa0631980:CDS
AATATGTCTGGCTGTAATTG+TGG	0.549280	4_3:-15523868	Msa0631980:CDS
GCCCAGAATCACGGTTTCTG+TGG	0.562120	4_3:+15522388	None:intergenic
GAGGATGGTGGCTGCAAGTG+TGG	0.564753	4_3:-15522314	Msa0631980:CDS
GATGCAACAGCAGGTCTAGT+GGG	0.579454	4_3:-15522433	Msa0631980:CDS
TGAAGGTGTTATGAGAGCTA+TGG	0.586513	4_3:-15522084	Msa0631980:three_prime_UTR
TGAAATGGGTGTTGCAGCTG+AGG	0.589074	4_3:-15522333	Msa0631980:CDS
GAAACCGTGATTCTGGGCGT+TGG	0.589097	4_3:-15522383	Msa0631980:CDS
CGGACCAACGCCCAGAATCA+CGG	0.590019	4_3:+15522379	None:intergenic
ATGGGTGTTGCAGCTGAGGA+TGG	0.598628	4_3:-15522329	Msa0631980:CDS
AGTGGGTTGGGCTATCTCGA+AGG	0.606024	4_3:-15522416	Msa0631980:CDS
AGATGCAACAGCAGGTCTAG+TGG	0.608709	4_3:-15522434	Msa0631980:CDS
GGTGTTGCAGCTGAGGATGG+TGG	0.628303	4_3:-15522326	Msa0631980:CDS
AGTGAAGTGCAACTTATGAA+AGG	0.648960	4_3:-15522259	Msa0631980:exon

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATATATATATATATATA+AGG	-	chr4_3:15522587-15522606	Msa0631980:intron	0.0%
!!	ATATATATATATATATATAA+GGG	-	chr4_3:15522618-15522637	Msa0631980:intron	0.0%
!!!	TTTTTTAAAAAAATATATAA+GGG	+	chr4_3:15523448-15523467	None:intergenic	0.0%
!!!	TTTTTTTAAAAAAATATATA+AGG	+	chr4_3:15523449-15523468	None:intergenic	0.0%
!!	TATATATATATATATATATA+AGG	-	chr4_3:15522587-15522606	Msa0631980:intron	0.0%
!!	ATATATATATATATATATAA+GGG	-	chr4_3:15522618-15522637	Msa0631980:intron	0.0%
!!!	TTTTTTAAAAAAATATATAA+GGG	+	chr4_3:15523448-15523467	None:intergenic	0.0%
!!!	TTTTTTTAAAAAAATATATA+AGG	+	chr4_3:15523449-15523468	None:intergenic	0.0%
!!	AGAAACAAAAAAAAAATATA+TGG	+	chr4_3:15522285-15522304	None:intergenic	10.0%
!!	TTATATAAGAAAATTAGATA+AGG	-	chr4_3:15523127-15523146	Msa0631980:intron	10.0%
!!	AACAAAATATATATTATTTC+TGG	+	chr4_3:15523168-15523187	None:intergenic	10.0%
!!	TTAATTAGAATAATATAAAG+TGG	-	chr4_3:15523803-15523822	Msa0631980:intron	10.0%
!!	AGAAACAAAAAAAAAATATA+TGG	+	chr4_3:15522285-15522304	None:intergenic	10.0%
!!	TTATATAAGAAAATTAGATA+AGG	-	chr4_3:15523127-15523146	Msa0631980:intron	10.0%
!!	AACAAAATATATATTATTTC+TGG	+	chr4_3:15523168-15523187	None:intergenic	10.0%
!!	TTAATTAGAATAATATAAAG+TGG	-	chr4_3:15523803-15523822	Msa0631980:intron	10.0%
!!	AATAGCTATTAAATAAGAAA+CGG	+	chr4_3:15522345-15522364	None:intergenic	15.0%
!!	GAGAAATTATGAAAAATTAA+GGG	+	chr4_3:15522473-15522492	None:intergenic	15.0%
!!	AGAGAAATTATGAAAAATTA+AGG	+	chr4_3:15522474-15522493	None:intergenic	15.0%
!!!	TAATTTTTCATAATTTCTCT+AGG	-	chr4_3:15522474-15522493	Msa0631980:intron	15.0%
!!!	GATTGAATTTCTTTTAAAAA+AGG	-	chr4_3:15522728-15522747	Msa0631980:intron	15.0%
!!!	AAAGAATCCTATTTAAAATA+TGG	+	chr4_3:15522896-15522915	None:intergenic	15.0%
!!	TAGAATAAATAAGTAACTTT+AGG	+	chr4_3:15522962-15522981	None:intergenic	15.0%
!!	CTAATTAAAATATTGATAAG+AGG	+	chr4_3:15523104-15523123	None:intergenic	15.0%
!!!	AAATATATATTATTTCTGGA+CGG	+	chr4_3:15523164-15523183	None:intergenic	15.0%
!!	AATAGCTATTAAATAAGAAA+CGG	+	chr4_3:15522345-15522364	None:intergenic	15.0%
!!	GAGAAATTATGAAAAATTAA+GGG	+	chr4_3:15522473-15522492	None:intergenic	15.0%
!!	AGAGAAATTATGAAAAATTA+AGG	+	chr4_3:15522474-15522493	None:intergenic	15.0%
!!!	TAATTTTTCATAATTTCTCT+AGG	-	chr4_3:15522474-15522493	Msa0631980:intron	15.0%
!!!	GATTGAATTTCTTTTAAAAA+AGG	-	chr4_3:15522728-15522747	Msa0631980:intron	15.0%
!!!	AAAGAATCCTATTTAAAATA+TGG	+	chr4_3:15522896-15522915	None:intergenic	15.0%
!!	TAGAATAAATAAGTAACTTT+AGG	+	chr4_3:15522962-15522981	None:intergenic	15.0%
!!	CTAATTAAAATATTGATAAG+AGG	+	chr4_3:15523104-15523123	None:intergenic	15.0%
!!!	AAATATATATTATTTCTGGA+CGG	+	chr4_3:15523164-15523183	None:intergenic	15.0%
!!	AGCAAAGAATAATATTTGAT+TGG	+	chr4_3:15522043-15522062	None:intergenic	20.0%
!!	TAAAAAGCAACAAAGAATTA+AGG	+	chr4_3:15522157-15522176	None:intergenic	20.0%
!!!	TTGTTTTTTTCATTACTCTT+TGG	-	chr4_3:15522233-15522252	Msa0631980:three_prime_UTR	20.0%
!!!	TGTTTTTTTCATTACTCTTT+GGG	-	chr4_3:15522234-15522253	Msa0631980:three_prime_UTR	20.0%
!!!	ATAGCTATTTTTACTCTTAT+TGG	-	chr4_3:15522356-15522375	Msa0631980:CDS	20.0%
!!	GAGAAAAAATATTGTTTGTT+CGG	+	chr4_3:15522415-15522434	None:intergenic	20.0%
!!	TATATATATATATAAGGGTC+TGG	-	chr4_3:15522623-15522642	Msa0631980:intron	20.0%
!!	ATATATATATATAAGGGTCT+GGG	-	chr4_3:15522624-15522643	Msa0631980:intron	20.0%
!!	AAGTTGTCAATAGAAAAAAT+AGG	-	chr4_3:15522826-15522845	Msa0631980:intron	20.0%
!!	AGTTGTCAATAGAAAAAATA+GGG	-	chr4_3:15522827-15522846	Msa0631980:intron	20.0%
!!!	AACTCATCCATATTTTAAAT+AGG	-	chr4_3:15522886-15522905	Msa0631980:intron	20.0%
!!	AATATGCAAAACATAATCTA+AGG	+	chr4_3:15522986-15523005	None:intergenic	20.0%
!!!	CTTTTTTTTAAGTAACGATT+AGG	-	chr4_3:15523258-15523277	Msa0631980:intron	20.0%
!!	AGCAAAGAATAATATTTGAT+TGG	+	chr4_3:15522043-15522062	None:intergenic	20.0%
!!	TAAAAAGCAACAAAGAATTA+AGG	+	chr4_3:15522157-15522176	None:intergenic	20.0%
!!!	TTGTTTTTTTCATTACTCTT+TGG	-	chr4_3:15522233-15522252	Msa0631980:three_prime_UTR	20.0%
!!!	TGTTTTTTTCATTACTCTTT+GGG	-	chr4_3:15522234-15522253	Msa0631980:three_prime_UTR	20.0%
!!!	ATAGCTATTTTTACTCTTAT+TGG	-	chr4_3:15522356-15522375	Msa0631980:CDS	20.0%
!!	GAGAAAAAATATTGTTTGTT+CGG	+	chr4_3:15522415-15522434	None:intergenic	20.0%
!!	TATATATATATATAAGGGTC+TGG	-	chr4_3:15522623-15522642	Msa0631980:intron	20.0%
!!	ATATATATATATAAGGGTCT+GGG	-	chr4_3:15522624-15522643	Msa0631980:intron	20.0%
!!	AAGTTGTCAATAGAAAAAAT+AGG	-	chr4_3:15522826-15522845	Msa0631980:intron	20.0%
!!	AGTTGTCAATAGAAAAAATA+GGG	-	chr4_3:15522827-15522846	Msa0631980:intron	20.0%
!!!	AACTCATCCATATTTTAAAT+AGG	-	chr4_3:15522886-15522905	Msa0631980:intron	20.0%
!!	AATATGCAAAACATAATCTA+AGG	+	chr4_3:15522986-15523005	None:intergenic	20.0%
!!!	CTTTTTTTTAAGTAACGATT+AGG	-	chr4_3:15523258-15523277	Msa0631980:intron	20.0%
!	TTGTGAATATCAAATATGTC+TGG	-	chr4_3:15522075-15522094	Msa0631980:three_prime_UTR	25.0%
!	TGTATCTTATGAATGAATCT+TGG	-	chr4_3:15522190-15522209	Msa0631980:three_prime_UTR	25.0%
!!!	TTTTTTTTTGTTTCTGCATG+AGG	-	chr4_3:15522290-15522309	Msa0631980:CDS	25.0%
!	TATATATATATAAGGGTCTG+GGG	-	chr4_3:15522625-15522644	Msa0631980:intron	25.0%
!!!	CAAAATCAGCTTTTTTTTTG+TGG	+	chr4_3:15522663-15522682	None:intergenic	25.0%
!!!	ATTTTGACTAAACAGTGTTT+TGG	-	chr4_3:15522677-15522696	Msa0631980:intron	25.0%
!!	ATGTTCTTAGATTTTGTTGA+AGG	-	chr4_3:15523854-15523873	Msa0631980:CDS	25.0%
!	TTGTGAATATCAAATATGTC+TGG	-	chr4_3:15522075-15522094	Msa0631980:three_prime_UTR	25.0%
!	TGTATCTTATGAATGAATCT+TGG	-	chr4_3:15522190-15522209	Msa0631980:three_prime_UTR	25.0%
!!!	TTTTTTTTTGTTTCTGCATG+AGG	-	chr4_3:15522290-15522309	Msa0631980:CDS	25.0%
!	TATATATATATAAGGGTCTG+GGG	-	chr4_3:15522625-15522644	Msa0631980:intron	25.0%
!!!	CAAAATCAGCTTTTTTTTTG+TGG	+	chr4_3:15522663-15522682	None:intergenic	25.0%
!!!	ATTTTGACTAAACAGTGTTT+TGG	-	chr4_3:15522677-15522696	Msa0631980:intron	25.0%
!!	ATGTTCTTAGATTTTGTTGA+AGG	-	chr4_3:15523854-15523873	Msa0631980:CDS	25.0%
	TTGATAAATCCAAAGACTTG+TGG	+	chr4_3:15522386-15522405	None:intergenic	30.0%
!!!	ACAATATTTTTTCTCGCATC+TGG	-	chr4_3:15522420-15522439	Msa0631980:CDS	30.0%
!!!	CAATATTTTTTCTCGCATCT+GGG	-	chr4_3:15522421-15522440	Msa0631980:CDS	30.0%
!	TCATACATGAATGAGCTTTT+TGG	-	chr4_3:15522506-15522525	Msa0631980:intron	30.0%
!	CATACATGAATGAGCTTTTT+GGG	-	chr4_3:15522507-15522526	Msa0631980:intron	30.0%
!!!	TCAGCTTTTTTTTTGTGGTT+GGG	+	chr4_3:15522658-15522677	None:intergenic	30.0%
!!!	ATCAGCTTTTTTTTTGTGGT+TGG	+	chr4_3:15522659-15522678	None:intergenic	30.0%
	TGGAGATTATATGATCGAAA+AGG	-	chr4_3:15522860-15522879	Msa0631980:intron	30.0%
!!	AGGATTCTTTTAACTGAGAA+TGG	-	chr4_3:15522906-15522925	Msa0631980:intron	30.0%
!!	GCTATTTCTTGTAAAGTCTA+GGG	-	chr4_3:15523280-15523299	Msa0631980:intron	30.0%
	TATTCCCAAATAAACGCAAA+GGG	+	chr4_3:15523333-15523352	None:intergenic	30.0%
	ATATTCCCAAATAAACGCAA+AGG	+	chr4_3:15523334-15523353	None:intergenic	30.0%
	TTCACAATTCATGTGTATGA+TGG	-	chr4_3:15523483-15523502	Msa0631980:intron	30.0%
	AGAATAATATAAAGTGGCCA+TGG	-	chr4_3:15523809-15523828	Msa0631980:intron	30.0%
	TTGATAAATCCAAAGACTTG+TGG	+	chr4_3:15522386-15522405	None:intergenic	30.0%
!!!	ACAATATTTTTTCTCGCATC+TGG	-	chr4_3:15522420-15522439	Msa0631980:CDS	30.0%
!!!	CAATATTTTTTCTCGCATCT+GGG	-	chr4_3:15522421-15522440	Msa0631980:CDS	30.0%
!	TCATACATGAATGAGCTTTT+TGG	-	chr4_3:15522506-15522525	Msa0631980:intron	30.0%
!	CATACATGAATGAGCTTTTT+GGG	-	chr4_3:15522507-15522526	Msa0631980:intron	30.0%
!!!	TCAGCTTTTTTTTTGTGGTT+GGG	+	chr4_3:15522658-15522677	None:intergenic	30.0%
!!!	ATCAGCTTTTTTTTTGTGGT+TGG	+	chr4_3:15522659-15522678	None:intergenic	30.0%
	TGGAGATTATATGATCGAAA+AGG	-	chr4_3:15522860-15522879	Msa0631980:intron	30.0%
!!	AGGATTCTTTTAACTGAGAA+TGG	-	chr4_3:15522906-15522925	Msa0631980:intron	30.0%
!!	GCTATTTCTTGTAAAGTCTA+GGG	-	chr4_3:15523280-15523299	Msa0631980:intron	30.0%
	TATTCCCAAATAAACGCAAA+GGG	+	chr4_3:15523333-15523352	None:intergenic	30.0%
	ATATTCCCAAATAAACGCAA+AGG	+	chr4_3:15523334-15523353	None:intergenic	30.0%
	TTCACAATTCATGTGTATGA+TGG	-	chr4_3:15523483-15523502	Msa0631980:intron	30.0%
	AGAATAATATAAAGTGGCCA+TGG	-	chr4_3:15523809-15523828	Msa0631980:intron	30.0%
	AATATGTCTGGCTGTAATTG+TGG	-	chr4_3:15522087-15522106	Msa0631980:three_prime_UTR	35.0%
	ATTGGATAACCACAAGTCTT+TGG	-	chr4_3:15522374-15522393	Msa0631980:CDS	35.0%
	TCTCGTGAGTTTAGATTAGT+TGG	-	chr4_3:15522556-15522575	Msa0631980:intron	35.0%
!!!	CAGCTTTTTTTTTGTGGTTG+GGG	+	chr4_3:15522657-15522676	None:intergenic	35.0%
!!	ATATTATTTCTGGACGGCTA+AGG	+	chr4_3:15523158-15523177	None:intergenic	35.0%
!	TAGATTCATCGTCAACCTTT+TGG	+	chr4_3:15523231-15523250	None:intergenic	35.0%
!!	GGCTATTTCTTGTAAAGTCT+AGG	-	chr4_3:15523279-15523298	Msa0631980:intron	35.0%
	TGCGTTTATTTGGGAATATG+TGG	-	chr4_3:15523335-15523354	Msa0631980:intron	35.0%
	TTGGGAATATGTGGATCATT+AGG	-	chr4_3:15523344-15523363	Msa0631980:intron	35.0%
	AGTGAAGTGCAACTTATGAA+AGG	-	chr4_3:15523696-15523715	Msa0631980:intron	35.0%
!!	TTTTCTGAAGATGAGATCCA+TGG	+	chr4_3:15523829-15523848	None:intergenic	35.0%
	AATATGTCTGGCTGTAATTG+TGG	-	chr4_3:15522087-15522106	Msa0631980:three_prime_UTR	35.0%
	ATTGGATAACCACAAGTCTT+TGG	-	chr4_3:15522374-15522393	Msa0631980:CDS	35.0%
	TCTCGTGAGTTTAGATTAGT+TGG	-	chr4_3:15522556-15522575	Msa0631980:intron	35.0%
!!!	CAGCTTTTTTTTTGTGGTTG+GGG	+	chr4_3:15522657-15522676	None:intergenic	35.0%
!!	ATATTATTTCTGGACGGCTA+AGG	+	chr4_3:15523158-15523177	None:intergenic	35.0%
!	TAGATTCATCGTCAACCTTT+TGG	+	chr4_3:15523231-15523250	None:intergenic	35.0%
!!	GGCTATTTCTTGTAAAGTCT+AGG	-	chr4_3:15523279-15523298	Msa0631980:intron	35.0%
	TGCGTTTATTTGGGAATATG+TGG	-	chr4_3:15523335-15523354	Msa0631980:intron	35.0%
	TTGGGAATATGTGGATCATT+AGG	-	chr4_3:15523344-15523363	Msa0631980:intron	35.0%
	AGTGAAGTGCAACTTATGAA+AGG	-	chr4_3:15523696-15523715	Msa0631980:intron	35.0%
!!	TTTTCTGAAGATGAGATCCA+TGG	+	chr4_3:15523829-15523848	None:intergenic	35.0%
	TGTGGAAGTAGTTGCAATTG+TGG	-	chr4_3:15522105-15522124	Msa0631980:three_prime_UTR	40.0%
	TGTGGTGATAACTGCAAGTA+AGG	-	chr4_3:15522123-15522142	Msa0631980:three_prime_UTR	40.0%
	GATGTAACAACGAGGACAAA+AGG	+	chr4_3:15523209-15523228	None:intergenic	40.0%
	TCCTCGTTGTTACATCCAAA+AGG	-	chr4_3:15523213-15523232	Msa0631980:intron	40.0%
!	ACCTTTTGGATGTAACAACG+AGG	+	chr4_3:15523217-15523236	None:intergenic	40.0%
	TCCTCCCTTTGCGTTTATTT+GGG	-	chr4_3:15523326-15523345	Msa0631980:intron	40.0%
!!!	CATTTTGAGGGTGCTGAAAT+GGG	-	chr4_3:15523608-15523627	Msa0631980:intron	40.0%
	CACTTCACTTACAGTTGCAT+GGG	+	chr4_3:15523685-15523704	None:intergenic	40.0%
!!	TGAAGGTGTTATGAGAGCTA+TGG	-	chr4_3:15523871-15523890	Msa0631980:exon	40.0%
!	AGCTATGGTTGCTTTGTGTT+TGG	-	chr4_3:15523886-15523905	Msa0631980:exon	40.0%
	TGTGGAAGTAGTTGCAATTG+TGG	-	chr4_3:15522105-15522124	Msa0631980:three_prime_UTR	40.0%
	TGTGGTGATAACTGCAAGTA+AGG	-	chr4_3:15522123-15522142	Msa0631980:three_prime_UTR	40.0%
	GATGTAACAACGAGGACAAA+AGG	+	chr4_3:15523209-15523228	None:intergenic	40.0%
	TCCTCGTTGTTACATCCAAA+AGG	-	chr4_3:15523213-15523232	Msa0631980:intron	40.0%
!	ACCTTTTGGATGTAACAACG+AGG	+	chr4_3:15523217-15523236	None:intergenic	40.0%
	TCCTCCCTTTGCGTTTATTT+GGG	-	chr4_3:15523326-15523345	Msa0631980:intron	40.0%
!!!	CATTTTGAGGGTGCTGAAAT+GGG	-	chr4_3:15523608-15523627	Msa0631980:intron	40.0%
	CACTTCACTTACAGTTGCAT+GGG	+	chr4_3:15523685-15523704	None:intergenic	40.0%
!!	TGAAGGTGTTATGAGAGCTA+TGG	-	chr4_3:15523871-15523890	Msa0631980:exon	40.0%
!	AGCTATGGTTGCTTTGTGTT+TGG	-	chr4_3:15523886-15523905	Msa0631980:exon	40.0%
!	GCATCTGGGTGAGAGAATTT+TGG	-	chr4_3:15522435-15522454	Msa0631980:CDS	45.0%
	AAAAATAGGGTCGTTGCGTG+TGG	-	chr4_3:15522840-15522859	Msa0631980:intron	45.0%
	CAAATAAACGCAAAGGGAGG+AGG	+	chr4_3:15523327-15523346	None:intergenic	45.0%
	CTCCTCCCTTTGCGTTTATT+TGG	-	chr4_3:15523325-15523344	Msa0631980:intron	45.0%
	TCCCAAATAAACGCAAAGGG+AGG	+	chr4_3:15523330-15523349	None:intergenic	45.0%
	AACCACAGAAACCGTGATTC+TGG	-	chr4_3:15523565-15523584	Msa0631980:intron	45.0%
	ACCACAGAAACCGTGATTCT+GGG	-	chr4_3:15523566-15523585	Msa0631980:intron	45.0%
!	TCCGGCAAAGATCCATTTTG+AGG	-	chr4_3:15523595-15523614	Msa0631980:intron	45.0%
	CCCTCAAAATGGATCTTTGC+CGG	+	chr4_3:15523599-15523618	None:intergenic	45.0%
!	CCGGCAAAGATCCATTTTGA+GGG	-	chr4_3:15523596-15523615	Msa0631980:intron	45.0%
	CCATTTCAGCACCCTCAAAA+TGG	+	chr4_3:15523610-15523629	None:intergenic	45.0%
!!!	CCATTTTGAGGGTGCTGAAA+TGG	-	chr4_3:15523607-15523626	Msa0631980:intron	45.0%
	GCACTTCACTTACAGTTGCA+TGG	+	chr4_3:15523686-15523705	None:intergenic	45.0%
!	GCATCTGGGTGAGAGAATTT+TGG	-	chr4_3:15522435-15522454	Msa0631980:CDS	45.0%
	AAAAATAGGGTCGTTGCGTG+TGG	-	chr4_3:15522840-15522859	Msa0631980:intron	45.0%
	CAAATAAACGCAAAGGGAGG+AGG	+	chr4_3:15523327-15523346	None:intergenic	45.0%
	CTCCTCCCTTTGCGTTTATT+TGG	-	chr4_3:15523325-15523344	Msa0631980:intron	45.0%
	TCCCAAATAAACGCAAAGGG+AGG	+	chr4_3:15523330-15523349	None:intergenic	45.0%
	AACCACAGAAACCGTGATTC+TGG	-	chr4_3:15523565-15523584	Msa0631980:intron	45.0%
	ACCACAGAAACCGTGATTCT+GGG	-	chr4_3:15523566-15523585	Msa0631980:intron	45.0%
!	TCCGGCAAAGATCCATTTTG+AGG	-	chr4_3:15523595-15523614	Msa0631980:intron	45.0%
	CCCTCAAAATGGATCTTTGC+CGG	+	chr4_3:15523599-15523618	None:intergenic	45.0%
!	CCGGCAAAGATCCATTTTGA+GGG	-	chr4_3:15523596-15523615	Msa0631980:intron	45.0%
	CCATTTCAGCACCCTCAAAA+TGG	+	chr4_3:15523610-15523629	None:intergenic	45.0%
!!!	CCATTTTGAGGGTGCTGAAA+TGG	-	chr4_3:15523607-15523626	Msa0631980:intron	45.0%
	GCACTTCACTTACAGTTGCA+TGG	+	chr4_3:15523686-15523705	None:intergenic	45.0%
	AGATGCAACAGCAGGTCTAG+TGG	-	chr4_3:15523521-15523540	Msa0631980:intron	50.0%
	GATGCAACAGCAGGTCTAGT+GGG	-	chr4_3:15523522-15523541	Msa0631980:intron	50.0%
!!	AACAGCAGGTCTAGTGGGTT+GGG	-	chr4_3:15523527-15523546	Msa0631980:intron	50.0%
!	TGAAATGGGTGTTGCAGCTG+AGG	-	chr4_3:15523622-15523641	Msa0631980:intron	50.0%
	AGATGCAACAGCAGGTCTAG+TGG	-	chr4_3:15523521-15523540	Msa0631980:intron	50.0%
	GATGCAACAGCAGGTCTAGT+GGG	-	chr4_3:15523522-15523541	Msa0631980:intron	50.0%
!!	AACAGCAGGTCTAGTGGGTT+GGG	-	chr4_3:15523527-15523546	Msa0631980:intron	50.0%
!	TGAAATGGGTGTTGCAGCTG+AGG	-	chr4_3:15523622-15523641	Msa0631980:intron	50.0%
	AACGCAAAGGGAGGAGGATG+TGG	+	chr4_3:15523321-15523340	None:intergenic	55.0%
	TGCCTTGCAGATGCAACAGC+AGG	-	chr4_3:15523513-15523532	Msa0631980:intron	55.0%
	GACCTGCTGTTGCATCTGCA+AGG	+	chr4_3:15523518-15523537	None:intergenic	55.0%
!	CAACAGCAGGTCTAGTGGGT+TGG	-	chr4_3:15523526-15523545	Msa0631980:intron	55.0%
!!	AGTGGGTTGGGCTATCTCGA+AGG	-	chr4_3:15523539-15523558	Msa0631980:intron	55.0%
	GCCCAGAATCACGGTTTCTG+TGG	+	chr4_3:15523570-15523589	None:intergenic	55.0%
	GAAACCGTGATTCTGGGCGT+TGG	-	chr4_3:15523572-15523591	Msa0631980:intron	55.0%
!	ATGGGTGTTGCAGCTGAGGA+TGG	-	chr4_3:15523626-15523645	Msa0631980:intron	55.0%
	AACGCAAAGGGAGGAGGATG+TGG	+	chr4_3:15523321-15523340	None:intergenic	55.0%
	TGCCTTGCAGATGCAACAGC+AGG	-	chr4_3:15523513-15523532	Msa0631980:intron	55.0%
	GACCTGCTGTTGCATCTGCA+AGG	+	chr4_3:15523518-15523537	None:intergenic	55.0%
!	CAACAGCAGGTCTAGTGGGT+TGG	-	chr4_3:15523526-15523545	Msa0631980:intron	55.0%
!!	AGTGGGTTGGGCTATCTCGA+AGG	-	chr4_3:15523539-15523558	Msa0631980:intron	55.0%
	GCCCAGAATCACGGTTTCTG+TGG	+	chr4_3:15523570-15523589	None:intergenic	55.0%
	GAAACCGTGATTCTGGGCGT+TGG	-	chr4_3:15523572-15523591	Msa0631980:intron	55.0%
!	ATGGGTGTTGCAGCTGAGGA+TGG	-	chr4_3:15523626-15523645	Msa0631980:intron	55.0%
	GGAGGAGGATGTGGTGACTC+TGG	+	chr4_3:15523312-15523331	None:intergenic	60.0%
	CGGACCAACGCCCAGAATCA+CGG	+	chr4_3:15523579-15523598	None:intergenic	60.0%
!!	CGTGATTCTGGGCGTTGGTC+CGG	-	chr4_3:15523577-15523596	Msa0631980:intron	60.0%
!	GGTGTTGCAGCTGAGGATGG+TGG	-	chr4_3:15523629-15523648	Msa0631980:intron	60.0%
!	GAGGATGGTGGCTGCAAGTG+TGG	-	chr4_3:15523641-15523660	Msa0631980:intron	60.0%
	GGAGGAGGATGTGGTGACTC+TGG	+	chr4_3:15523312-15523331	None:intergenic	60.0%
	CGGACCAACGCCCAGAATCA+CGG	+	chr4_3:15523579-15523598	None:intergenic	60.0%
!!	CGTGATTCTGGGCGTTGGTC+CGG	-	chr4_3:15523577-15523596	Msa0631980:intron	60.0%
!	GGTGTTGCAGCTGAGGATGG+TGG	-	chr4_3:15523629-15523648	Msa0631980:intron	60.0%
!	GAGGATGGTGGCTGCAAGTG+TGG	-	chr4_3:15523641-15523660	Msa0631980:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	15522014	15523963	15522014	ID=Msa0631980;Name=Msa0631980
chr4_3	mRNA	15522014	15523963	15522014	ID=Msa0631980-mRNA-1;Parent=Msa0631980;Name=Msa0631980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76\|1\|1\|1\|1\|1\|2\|263\|75
chr4_3	exon	15522014	15522454	15522014	ID=Msa0631980-mRNA-1:exon:4418;Parent=Msa0631980-mRNA-1
chr4_3	exon	15523838	15523963	15523838	ID=Msa0631980-mRNA-1:exon:4417;Parent=Msa0631980-mRNA-1
chr4_3	five_prime_UTR	15523888	15523963	15523888	ID=Msa0631980-mRNA-1:five_prime_utr;Parent=Msa0631980-mRNA-1
chr4_3	CDS	15523838	15523887	15523838	ID=Msa0631980-mRNA-1:cds;Parent=Msa0631980-mRNA-1
chr4_3	CDS	15522277	15522454	15522277	ID=Msa0631980-mRNA-1:cds;Parent=Msa0631980-mRNA-1
chr4_3	three_prime_UTR	15522014	15522276	15522014	ID=Msa0631980-mRNA-1:three_prime_utr;Parent=Msa0631980-mRNA-1

Gene Sequence	>Msa0631980 ATGTCTGGCTGTAATTGTGGAAGTAGTTGCAATTGTGGTGATAACTGCAAATGCAACAGCAGGTCTAGTGGGTTGGGCTATCTCGAAGGCGAAACCACAGAAACCGTGATTCTGGGCGTTGGTCCGGCAAAGATCCATTTTGAGGGTGCTGAAATGGGTGTTGCAGCTGAGGATGGTGGCTGCAAGTGTGGAGATAGCTGCACATGTGACCCATGCAACTGTAAGTGA
Protein sequence	>Msa0631980 MSGCNCGSSCNCGDNCKCNSRSSGLGYLEGETTETVILGVGPAKIHFEGAEMGVAAEDGGCKCGDSCTCDPCNCK*