Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671720 | KEH29089.1 | 98.319 | 119 | 2 | 0 | 1 | 119 | 88 | 206 | 2.03e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671720 | sp|O14045|TPT1_SCHPO | 44.660 | 103 | 57 | 0 | 11 | 113 | 126 | 228 | 4.66e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671720 | A0A072UH50 | 98.319 | 119 | 2 | 0 | 1 | 119 | 88 | 206 | 9.69e-81 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0671720 | Msa1275540 | 0.803274 | 3.769515e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671720 | MtrunA17_Chr4g0010821 | 97.479 | 119 | 2 | 1 | 1 | 119 | 132 | 249 | 1.60e-81 | 239 |
| Msa0671720 | MtrunA17_Chr4g0043991 | 94.118 | 119 | 7 | 0 | 1 | 119 | 128 | 246 | 1.21e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671720 | AT2G45330.1 | 78.151 | 119 | 26 | 0 | 1 | 119 | 171 | 289 | 3.37e-66 | 202 |
| Msa0671720 | AT2G45330.2 | 78.151 | 119 | 26 | 0 | 1 | 119 | 168 | 286 | 4.01e-66 | 201 |
| Msa0671720 | AT5G23600.1 | 74.790 | 119 | 30 | 0 | 1 | 119 | 94 | 212 | 2.14e-63 | 192 |
Find 29 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTCAATTCAAGTTATT+AGG | 0.251077 | 4_4:-15486681 | Msa0671720:three_prime_UTR |
| AAAGGAATGGGCTGTCTTCC+AGG | 0.291853 | 4_4:+15486796 | None:intergenic |
| CTTTCAGCTGAAGAATTTCC+AGG | 0.315199 | 4_4:-15488411 | Msa0671720:intron |
| CAGGCCATGATTCTATCTTC+TGG | 0.359568 | 4_4:+15486815 | None:intergenic |
| TCTTGATGTTAGAAAAGCTT+TGG | 0.397728 | 4_4:-15487233 | Msa0671720:CDS |
| TTCTATCTTCTGGAAATACT+TGG | 0.416001 | 4_4:+15486825 | None:intergenic |
| TGATTTAGACGATCTTACTT+TGG | 0.430696 | 4_4:-15486619 | Msa0671720:three_prime_UTR |
| TGGGACATACAAACGGAACT+TGG | 0.466157 | 4_4:-15488126 | Msa0671720:CDS |
| CAATTTAGTAATCCTCAACT+TGG | 0.468145 | 4_4:+15486729 | None:intergenic |
| AATTCTTCAGCTGAAAGGAT+TGG | 0.481880 | 4_4:+15488417 | None:intergenic |
| TTGGACTCGATTCTAGCATC+TGG | 0.506939 | 4_4:-15488107 | Msa0671720:CDS |
| CTTATTACTTCTCCATCTGT+TGG | 0.510272 | 4_4:+15488038 | None:intergenic |
| TGATGTTAGAAAAGCTTTGG+AGG | 0.518715 | 4_4:-15487230 | Msa0671720:CDS |
| CTGGAAATTCTTCAGCTGAA+AGG | 0.519696 | 4_4:+15488412 | None:intergenic |
| TTGCATGTTCATTTCTCTCG+TGG | 0.520604 | 4_4:-15488065 | Msa0671720:CDS |
| CAATATGCAGTTTGTGTGCA+TGG | 0.523280 | 4_4:-15488146 | Msa0671720:intron |
| TGACAACAAGGTGATCTTGA+CGG | 0.526281 | 4_4:-15486872 | Msa0671720:CDS |
| TCTCGTGGTTTACCAACAGA+TGG | 0.530628 | 4_4:-15488050 | Msa0671720:CDS |
| CAGAAGATAGAATCATGGCC+TGG | 0.530960 | 4_4:-15486814 | Msa0671720:CDS |
| TGTAAGGTTATTCCAAGTTG+AGG | 0.540900 | 4_4:-15486741 | Msa0671720:three_prime_UTR |
| GTGTGCATGGGACATACAAA+CGG | 0.549606 | 4_4:-15488133 | Msa0671720:CDS |
| GATGTTAGAAAAGCTTTGGA+GGG | 0.554599 | 4_4:-15487229 | Msa0671720:intron |
| GTCTAAATCATGAAATAAGT+AGG | 0.560400 | 4_4:+15486632 | None:intergenic |
| ATCTTCTGGAAATACTTGGA+TGG | 0.562560 | 4_4:+15486829 | None:intergenic |
| ATTTCCAGAAGATAGAATCA+TGG | 0.588014 | 4_4:-15486819 | Msa0671720:CDS |
| ACAGATGGAGAAGTAATAAG+TGG | 0.603164 | 4_4:-15488035 | Msa0671720:intron |
| AACAAGGTGATCTTGACGGA+AGG | 0.618679 | 4_4:-15486868 | Msa0671720:CDS |
| AATATGCAGTTTGTGTGCAT+GGG | 0.648440 | 4_4:-15488145 | Msa0671720:intron |
| GCTATACATTTCTGACAACA+AGG | 0.670805 | 4_4:-15486884 | Msa0671720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAAGAAAATAAATT+AGG | + | chr4_4:15487760-15487779 | None:intergenic | 10.0% |
| !! | AATGAAAAAGAAAATAAATT+AGG | + | chr4_4:15487760-15487779 | None:intergenic | 10.0% |
| !!! | TTTTTCAAACAAAATATGAT+TGG | + | chr4_4:15486835-15486854 | None:intergenic | 15.0% |
| !!! | AAGAATATTAAATTTTTGCA+CGG | - | chr4_4:15487655-15487674 | Msa0671720:intron | 15.0% |
| !! | TCTAGATTTAACAAAAATAA+AGG | + | chr4_4:15487936-15487955 | None:intergenic | 15.0% |
| !!! | TTTTTCAAACAAAATATGAT+TGG | + | chr4_4:15486835-15486854 | None:intergenic | 15.0% |
| !!! | AAGAATATTAAATTTTTGCA+CGG | - | chr4_4:15487655-15487674 | Msa0671720:intron | 15.0% |
| !! | TCTAGATTTAACAAAAATAA+AGG | + | chr4_4:15487936-15487955 | None:intergenic | 15.0% |
| !!! | AAACTTTTTGATAGGTAAAT+AGG | + | chr4_4:15487071-15487090 | None:intergenic | 20.0% |
| !! | ATTTCCTTTCTTGAATATTA+AGG | - | chr4_4:15487132-15487151 | Msa0671720:intron | 20.0% |
| !!! | GAATCAGGAAATTTTTTATT+GGG | + | chr4_4:15487253-15487272 | None:intergenic | 20.0% |
| !!! | AGAATCAGGAAATTTTTTAT+TGG | + | chr4_4:15487254-15487273 | None:intergenic | 20.0% |
| !! | TACACAATATTATCTTATTG+GGG | + | chr4_4:15487904-15487923 | None:intergenic | 20.0% |
| !! | CTACACAATATTATCTTATT+GGG | + | chr4_4:15487905-15487924 | None:intergenic | 20.0% |
| !! | ACTACACAATATTATCTTAT+TGG | + | chr4_4:15487906-15487925 | None:intergenic | 20.0% |
| !! | AGATTTAACAAAAATAAAGG+TGG | + | chr4_4:15487933-15487952 | None:intergenic | 20.0% |
| !!! | CATAGATTTTAAAAAGGAAT+GGG | + | chr4_4:15488274-15488293 | None:intergenic | 20.0% |
| !!! | ATATGCCATAGATTTTAAAA+AGG | + | chr4_4:15488280-15488299 | None:intergenic | 20.0% |
| !!! | ATTTTGTTCTTACTAATGTA+AGG | - | chr4_4:15488298-15488317 | Msa0671720:intron | 20.0% |
| !!! | AAACTTCAATTCAAGTTATT+AGG | - | chr4_4:15488374-15488393 | Msa0671720:intron | 20.0% |
| !!! | AAACTTTTTGATAGGTAAAT+AGG | + | chr4_4:15487071-15487090 | None:intergenic | 20.0% |
| !! | ATTTCCTTTCTTGAATATTA+AGG | - | chr4_4:15487132-15487151 | Msa0671720:intron | 20.0% |
| !!! | GAATCAGGAAATTTTTTATT+GGG | + | chr4_4:15487253-15487272 | None:intergenic | 20.0% |
| !!! | AGAATCAGGAAATTTTTTAT+TGG | + | chr4_4:15487254-15487273 | None:intergenic | 20.0% |
| !! | TACACAATATTATCTTATTG+GGG | + | chr4_4:15487904-15487923 | None:intergenic | 20.0% |
| !! | CTACACAATATTATCTTATT+GGG | + | chr4_4:15487905-15487924 | None:intergenic | 20.0% |
| !! | ACTACACAATATTATCTTAT+TGG | + | chr4_4:15487906-15487925 | None:intergenic | 20.0% |
| !! | AGATTTAACAAAAATAAAGG+TGG | + | chr4_4:15487933-15487952 | None:intergenic | 20.0% |
| !!! | CATAGATTTTAAAAAGGAAT+GGG | + | chr4_4:15488274-15488293 | None:intergenic | 20.0% |
| !!! | ATATGCCATAGATTTTAAAA+AGG | + | chr4_4:15488280-15488299 | None:intergenic | 20.0% |
| !!! | ATTTTGTTCTTACTAATGTA+AGG | - | chr4_4:15488298-15488317 | Msa0671720:intron | 20.0% |
| !!! | AAACTTCAATTCAAGTTATT+AGG | - | chr4_4:15488374-15488393 | Msa0671720:intron | 20.0% |
| ! | CCACTATTCAAAAGATAATT+TGG | + | chr4_4:15486774-15486793 | None:intergenic | 25.0% |
| !! | CCAAATTATCTTTTGAATAG+TGG | - | chr4_4:15486771-15486790 | Msa0671720:three_prime_UTR | 25.0% |
| !! | CCAGATTTAAACTTTTTGAT+AGG | + | chr4_4:15487079-15487098 | None:intergenic | 25.0% |
| ! | CCTATCAAAAAGTTTAAATC+TGG | - | chr4_4:15487076-15487095 | Msa0671720:intron | 25.0% |
| !! | GGATATATTTTGTCTCATTA+TGG | - | chr4_4:15487097-15487116 | Msa0671720:intron | 25.0% |
| !! | TATTTTGTCTCATTATGGTT+AGG | - | chr4_4:15487102-15487121 | Msa0671720:intron | 25.0% |
| ! | CTATCCTTAATATTCAAGAA+AGG | + | chr4_4:15487139-15487158 | None:intergenic | 25.0% |
| ! | TTCTTGAATATTAAGGATAG+TGG | - | chr4_4:15487139-15487158 | Msa0671720:intron | 25.0% |
| ! | ATAAGTTATGAAGCGATAAA+GGG | + | chr4_4:15487578-15487597 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTTTATTCCC+AGG | - | chr4_4:15487769-15487788 | Msa0671720:intron | 25.0% |
| !!! | CCATAGATTTTAAAAAGGAA+TGG | + | chr4_4:15488275-15488294 | None:intergenic | 25.0% |
| !!! | CCATTCCTTTTTAAAATCTA+TGG | - | chr4_4:15488272-15488291 | Msa0671720:intron | 25.0% |
| ! | GTCTAAATCATGAAATAAGT+AGG | + | chr4_4:15488426-15488445 | None:intergenic | 25.0% |
| ! | CCACTATTCAAAAGATAATT+TGG | + | chr4_4:15486774-15486793 | None:intergenic | 25.0% |
| !! | CCAAATTATCTTTTGAATAG+TGG | - | chr4_4:15486771-15486790 | Msa0671720:three_prime_UTR | 25.0% |
| !! | CCAGATTTAAACTTTTTGAT+AGG | + | chr4_4:15487079-15487098 | None:intergenic | 25.0% |
| ! | CCTATCAAAAAGTTTAAATC+TGG | - | chr4_4:15487076-15487095 | Msa0671720:intron | 25.0% |
| !! | GGATATATTTTGTCTCATTA+TGG | - | chr4_4:15487097-15487116 | Msa0671720:intron | 25.0% |
| !! | TATTTTGTCTCATTATGGTT+AGG | - | chr4_4:15487102-15487121 | Msa0671720:intron | 25.0% |
| ! | CTATCCTTAATATTCAAGAA+AGG | + | chr4_4:15487139-15487158 | None:intergenic | 25.0% |
| ! | TTCTTGAATATTAAGGATAG+TGG | - | chr4_4:15487139-15487158 | Msa0671720:intron | 25.0% |
| ! | ATAAGTTATGAAGCGATAAA+GGG | + | chr4_4:15487578-15487597 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTTTATTCCC+AGG | - | chr4_4:15487769-15487788 | Msa0671720:intron | 25.0% |
| !!! | CCATAGATTTTAAAAAGGAA+TGG | + | chr4_4:15488275-15488294 | None:intergenic | 25.0% |
| !!! | CCATTCCTTTTTAAAATCTA+TGG | - | chr4_4:15488272-15488291 | Msa0671720:intron | 25.0% |
| ! | GTCTAAATCATGAAATAAGT+AGG | + | chr4_4:15488426-15488445 | None:intergenic | 25.0% |
| CAATTCAATAATTAAGCACC+TGG | + | chr4_4:15486665-15486684 | None:intergenic | 30.0% | |
| TGAACGAAGTCTATATTCTA+TGG | + | chr4_4:15486693-15486712 | None:intergenic | 30.0% | |
| TAGAATATAGACTTCGTTCA+AGG | - | chr4_4:15486693-15486712 | Msa0671720:three_prime_UTR | 30.0% | |
| !!! | CTTTTGAATAGTGGATATGT+TGG | - | chr4_4:15486780-15486799 | Msa0671720:exon | 30.0% |
| ! | CATCTTTTCATTAATCCTTC+TGG | + | chr4_4:15487178-15487197 | None:intergenic | 30.0% |
| !! | ATCTAGCTTTGAACTTAATG+TGG | - | chr4_4:15487224-15487243 | Msa0671720:intron | 30.0% |
| !! | ATTCTGTTGCTTTCTACTTA+AGG | - | chr4_4:15487269-15487288 | Msa0671720:intron | 30.0% |
| TAGTAGAAATAGGGAACTTA+TGG | - | chr4_4:15487298-15487317 | Msa0671720:intron | 30.0% | |
| !! | TCAATCATCCAGAGTTTTAA+TGG | - | chr4_4:15487357-15487376 | Msa0671720:intron | 30.0% |
| !! | CAATCATCCAGAGTTTTAAT+GGG | - | chr4_4:15487358-15487377 | Msa0671720:intron | 30.0% |
| !! | AATCATCCAGAGTTTTAATG+GGG | - | chr4_4:15487359-15487378 | Msa0671720:intron | 30.0% |
| CAATTAAGTATACATGCACT+TGG | + | chr4_4:15487421-15487440 | None:intergenic | 30.0% | |
| ATCATTTGCAGAGAAATGAT+GGG | + | chr4_4:15487456-15487475 | None:intergenic | 30.0% | |
| AATCATTTGCAGAGAAATGA+TGG | + | chr4_4:15487457-15487476 | None:intergenic | 30.0% | |
| ! | TCAATGGTAATTCTAAGAGA+GGG | + | chr4_4:15487519-15487538 | None:intergenic | 30.0% |
| ! | ATCAATGGTAATTCTAAGAG+AGG | + | chr4_4:15487520-15487539 | None:intergenic | 30.0% |
| TAAGTTATGAAGCGATAAAG+GGG | + | chr4_4:15487577-15487596 | None:intergenic | 30.0% | |
| GATAAGTTATGAAGCGATAA+AGG | + | chr4_4:15487579-15487598 | None:intergenic | 30.0% | |
| TCTTGATGTTAGAAAAGCTT+TGG | - | chr4_4:15487822-15487841 | Msa0671720:intron | 30.0% | |
| TTCAGACAAATGTTAGTTGT+TGG | + | chr4_4:15487995-15488014 | None:intergenic | 30.0% | |
| ! | CACAAGTCAATTTTCTTGTT+TGG | + | chr4_4:15488105-15488124 | None:intergenic | 30.0% |
| GTTGCTTCTTTCTATTATGT+TGG | - | chr4_4:15488126-15488145 | Msa0671720:CDS | 30.0% | |
| ! | TTCTATCTTCTGGAAATACT+TGG | + | chr4_4:15488233-15488252 | None:intergenic | 30.0% |
| ATTTCCAGAAGATAGAATCA+TGG | - | chr4_4:15488236-15488255 | Msa0671720:intron | 30.0% | |
| CAATTTAGTAATCCTCAACT+TGG | + | chr4_4:15488329-15488348 | None:intergenic | 30.0% | |
| TGATTTAGACGATCTTACTT+TGG | - | chr4_4:15488436-15488455 | Msa0671720:CDS | 30.0% | |
| CAATTCAATAATTAAGCACC+TGG | + | chr4_4:15486665-15486684 | None:intergenic | 30.0% | |
| TGAACGAAGTCTATATTCTA+TGG | + | chr4_4:15486693-15486712 | None:intergenic | 30.0% | |
| TAGAATATAGACTTCGTTCA+AGG | - | chr4_4:15486693-15486712 | Msa0671720:three_prime_UTR | 30.0% | |
| !!! | CTTTTGAATAGTGGATATGT+TGG | - | chr4_4:15486780-15486799 | Msa0671720:exon | 30.0% |
| ! | CATCTTTTCATTAATCCTTC+TGG | + | chr4_4:15487178-15487197 | None:intergenic | 30.0% |
| !! | ATCTAGCTTTGAACTTAATG+TGG | - | chr4_4:15487224-15487243 | Msa0671720:intron | 30.0% |
| !! | ATTCTGTTGCTTTCTACTTA+AGG | - | chr4_4:15487269-15487288 | Msa0671720:intron | 30.0% |
| TAGTAGAAATAGGGAACTTA+TGG | - | chr4_4:15487298-15487317 | Msa0671720:intron | 30.0% | |
| !! | TCAATCATCCAGAGTTTTAA+TGG | - | chr4_4:15487357-15487376 | Msa0671720:intron | 30.0% |
| !! | CAATCATCCAGAGTTTTAAT+GGG | - | chr4_4:15487358-15487377 | Msa0671720:intron | 30.0% |
| !! | AATCATCCAGAGTTTTAATG+GGG | - | chr4_4:15487359-15487378 | Msa0671720:intron | 30.0% |
| CAATTAAGTATACATGCACT+TGG | + | chr4_4:15487421-15487440 | None:intergenic | 30.0% | |
| ATCATTTGCAGAGAAATGAT+GGG | + | chr4_4:15487456-15487475 | None:intergenic | 30.0% | |
| AATCATTTGCAGAGAAATGA+TGG | + | chr4_4:15487457-15487476 | None:intergenic | 30.0% | |
| ! | TCAATGGTAATTCTAAGAGA+GGG | + | chr4_4:15487519-15487538 | None:intergenic | 30.0% |
| ! | ATCAATGGTAATTCTAAGAG+AGG | + | chr4_4:15487520-15487539 | None:intergenic | 30.0% |
| TAAGTTATGAAGCGATAAAG+GGG | + | chr4_4:15487577-15487596 | None:intergenic | 30.0% | |
| GATAAGTTATGAAGCGATAA+AGG | + | chr4_4:15487579-15487598 | None:intergenic | 30.0% | |
| TCTTGATGTTAGAAAAGCTT+TGG | - | chr4_4:15487822-15487841 | Msa0671720:intron | 30.0% | |
| TTCAGACAAATGTTAGTTGT+TGG | + | chr4_4:15487995-15488014 | None:intergenic | 30.0% | |
| ! | CACAAGTCAATTTTCTTGTT+TGG | + | chr4_4:15488105-15488124 | None:intergenic | 30.0% |
| GTTGCTTCTTTCTATTATGT+TGG | - | chr4_4:15488126-15488145 | Msa0671720:CDS | 30.0% | |
| ! | TTCTATCTTCTGGAAATACT+TGG | + | chr4_4:15488233-15488252 | None:intergenic | 30.0% |
| ATTTCCAGAAGATAGAATCA+TGG | - | chr4_4:15488236-15488255 | Msa0671720:intron | 30.0% | |
| CAATTTAGTAATCCTCAACT+TGG | + | chr4_4:15488329-15488348 | None:intergenic | 30.0% | |
| TGATTTAGACGATCTTACTT+TGG | - | chr4_4:15488436-15488455 | Msa0671720:CDS | 30.0% | |
| AATTCTTCAGCTGAAAGGAT+TGG | + | chr4_4:15486641-15486660 | None:intergenic | 35.0% | |
| AATATGCAGTTTGTGTGCAT+GGG | - | chr4_4:15486910-15486929 | Msa0671720:intron | 35.0% | |
| CTTATTACTTCTCCATCTGT+TGG | + | chr4_4:15487020-15487039 | None:intergenic | 35.0% | |
| ACAGATGGAGAAGTAATAAG+TGG | - | chr4_4:15487020-15487039 | Msa0671720:intron | 35.0% | |
| ! | TGAATATTAAGGATAGTGGC+CGG | - | chr4_4:15487143-15487162 | Msa0671720:intron | 35.0% |
| AAGTAGAAAGCAACAGAATC+AGG | + | chr4_4:15487268-15487287 | None:intergenic | 35.0% | |
| AAGGTCTGGATAGTAGAAAT+AGG | - | chr4_4:15487288-15487307 | Msa0671720:intron | 35.0% | |
| AGGTCTGGATAGTAGAAATA+GGG | - | chr4_4:15487289-15487308 | Msa0671720:intron | 35.0% | |
| !! | ATCATCCAGAGTTTTAATGG+GGG | - | chr4_4:15487360-15487379 | Msa0671720:intron | 35.0% |
| GATGCTTCTGTGTTTATCAA+TGG | + | chr4_4:15487535-15487554 | None:intergenic | 35.0% | |
| !! | AAACACAGAAGCATCCAATT+TGG | - | chr4_4:15487540-15487559 | Msa0671720:intron | 35.0% |
| CTCAGACAAGCAAAATTCAA+AGG | + | chr4_4:15487609-15487628 | None:intergenic | 35.0% | |
| ! | TGATGTTAGAAAAGCTTTGG+AGG | - | chr4_4:15487825-15487844 | Msa0671720:intron | 35.0% |
| !! | GATGTTAGAAAAGCTTTGGA+GGG | - | chr4_4:15487826-15487845 | Msa0671720:intron | 35.0% |
| !! | AGCTTCATACCTTCTGAAAT+GGG | + | chr4_4:15488154-15488173 | None:intergenic | 35.0% |
| ! | TAGCTTCATACCTTCTGAAA+TGG | + | chr4_4:15488155-15488174 | None:intergenic | 35.0% |
| GCTATACATTTCTGACAACA+AGG | - | chr4_4:15488171-15488190 | Msa0671720:intron | 35.0% | |
| ! | ATCTTCTGGAAATACTTGGA+TGG | + | chr4_4:15488229-15488248 | None:intergenic | 35.0% |
| TGTAAGGTTATTCCAAGTTG+AGG | - | chr4_4:15488314-15488333 | Msa0671720:intron | 35.0% | |
| AATTCTTCAGCTGAAAGGAT+TGG | + | chr4_4:15486641-15486660 | None:intergenic | 35.0% | |
| AATATGCAGTTTGTGTGCAT+GGG | - | chr4_4:15486910-15486929 | Msa0671720:intron | 35.0% | |
| CTTATTACTTCTCCATCTGT+TGG | + | chr4_4:15487020-15487039 | None:intergenic | 35.0% | |
| ACAGATGGAGAAGTAATAAG+TGG | - | chr4_4:15487020-15487039 | Msa0671720:intron | 35.0% | |
| ! | TGAATATTAAGGATAGTGGC+CGG | - | chr4_4:15487143-15487162 | Msa0671720:intron | 35.0% |
| AAGTAGAAAGCAACAGAATC+AGG | + | chr4_4:15487268-15487287 | None:intergenic | 35.0% | |
| AAGGTCTGGATAGTAGAAAT+AGG | - | chr4_4:15487288-15487307 | Msa0671720:intron | 35.0% | |
| AGGTCTGGATAGTAGAAATA+GGG | - | chr4_4:15487289-15487308 | Msa0671720:intron | 35.0% | |
| !! | ATCATCCAGAGTTTTAATGG+GGG | - | chr4_4:15487360-15487379 | Msa0671720:intron | 35.0% |
| GATGCTTCTGTGTTTATCAA+TGG | + | chr4_4:15487535-15487554 | None:intergenic | 35.0% | |
| !! | AAACACAGAAGCATCCAATT+TGG | - | chr4_4:15487540-15487559 | Msa0671720:intron | 35.0% |
| CTCAGACAAGCAAAATTCAA+AGG | + | chr4_4:15487609-15487628 | None:intergenic | 35.0% | |
| ! | TGATGTTAGAAAAGCTTTGG+AGG | - | chr4_4:15487825-15487844 | Msa0671720:intron | 35.0% |
| !! | GATGTTAGAAAAGCTTTGGA+GGG | - | chr4_4:15487826-15487845 | Msa0671720:intron | 35.0% |
| !! | AGCTTCATACCTTCTGAAAT+GGG | + | chr4_4:15488154-15488173 | None:intergenic | 35.0% |
| ! | TAGCTTCATACCTTCTGAAA+TGG | + | chr4_4:15488155-15488174 | None:intergenic | 35.0% |
| GCTATACATTTCTGACAACA+AGG | - | chr4_4:15488171-15488190 | Msa0671720:intron | 35.0% | |
| ! | ATCTTCTGGAAATACTTGGA+TGG | + | chr4_4:15488229-15488248 | None:intergenic | 35.0% |
| TGTAAGGTTATTCCAAGTTG+AGG | - | chr4_4:15488314-15488333 | Msa0671720:intron | 35.0% | |
| CTGGAAATTCTTCAGCTGAA+AGG | + | chr4_4:15486646-15486665 | None:intergenic | 40.0% | |
| CTTTCAGCTGAAGAATTTCC+AGG | - | chr4_4:15486644-15486663 | Msa0671720:three_prime_UTR | 40.0% | |
| TGCACACAAACTGCATATTG+TGG | + | chr4_4:15486909-15486928 | None:intergenic | 40.0% | |
| CAATATGCAGTTTGTGTGCA+TGG | - | chr4_4:15486909-15486928 | Msa0671720:intron | 40.0% | |
| TTGCATGTTCATTTCTCTCG+TGG | - | chr4_4:15486990-15487009 | Msa0671720:intron | 40.0% | |
| ! | GAATATTAAGGATAGTGGCC+GGG | - | chr4_4:15487144-15487163 | Msa0671720:intron | 40.0% |
| ! | ATCCTTCTGGATTTTGAACC+CGG | + | chr4_4:15487165-15487184 | None:intergenic | 40.0% |
| ! | GTTGCTTTCTACTTAAGGTC+TGG | - | chr4_4:15487274-15487293 | Msa0671720:intron | 40.0% |
| AAATAGGGAACTTATGGCGT+AGG | - | chr4_4:15487304-15487323 | Msa0671720:intron | 40.0% | |
| TGGGGGAGTAGCTAAATTAT+TGG | - | chr4_4:15487377-15487396 | Msa0671720:intron | 40.0% | |
| ! | ATGGTAATTCTAAGAGAGGG+TGG | + | chr4_4:15487516-15487535 | None:intergenic | 40.0% |
| AGCATCCAATTTGGACCTAT+CGG | - | chr4_4:15487549-15487568 | Msa0671720:intron | 40.0% | |
| TCGCTTCATAACTTATCCAG+TGG | - | chr4_4:15487582-15487601 | Msa0671720:intron | 40.0% | |
| AGCAAAATTCAAAGGTCCAC+TGG | + | chr4_4:15487601-15487620 | None:intergenic | 40.0% | |
| TTGGGGACTAAAAGATGAAC+TGG | + | chr4_4:15487887-15487906 | None:intergenic | 40.0% | |
| ATGTTGGATCCCATTTCAGA+AGG | - | chr4_4:15488142-15488161 | Msa0671720:intron | 40.0% | |
| TGACAACAAGGTGATCTTGA+CGG | - | chr4_4:15488183-15488202 | Msa0671720:intron | 40.0% | |
| !! | ATCTTGACGGAAGGTTTTGA+TGG | - | chr4_4:15488196-15488215 | Msa0671720:intron | 40.0% |
| CTGGAAATTCTTCAGCTGAA+AGG | + | chr4_4:15486646-15486665 | None:intergenic | 40.0% | |
| CTTTCAGCTGAAGAATTTCC+AGG | - | chr4_4:15486644-15486663 | Msa0671720:three_prime_UTR | 40.0% | |
| TGCACACAAACTGCATATTG+TGG | + | chr4_4:15486909-15486928 | None:intergenic | 40.0% | |
| CAATATGCAGTTTGTGTGCA+TGG | - | chr4_4:15486909-15486928 | Msa0671720:intron | 40.0% | |
| TTGCATGTTCATTTCTCTCG+TGG | - | chr4_4:15486990-15487009 | Msa0671720:intron | 40.0% | |
| ! | GAATATTAAGGATAGTGGCC+GGG | - | chr4_4:15487144-15487163 | Msa0671720:intron | 40.0% |
| ! | ATCCTTCTGGATTTTGAACC+CGG | + | chr4_4:15487165-15487184 | None:intergenic | 40.0% |
| ! | GTTGCTTTCTACTTAAGGTC+TGG | - | chr4_4:15487274-15487293 | Msa0671720:intron | 40.0% |
| AAATAGGGAACTTATGGCGT+AGG | - | chr4_4:15487304-15487323 | Msa0671720:intron | 40.0% | |
| TGGGGGAGTAGCTAAATTAT+TGG | - | chr4_4:15487377-15487396 | Msa0671720:intron | 40.0% | |
| ! | ATGGTAATTCTAAGAGAGGG+TGG | + | chr4_4:15487516-15487535 | None:intergenic | 40.0% |
| AGCATCCAATTTGGACCTAT+CGG | - | chr4_4:15487549-15487568 | Msa0671720:intron | 40.0% | |
| TCGCTTCATAACTTATCCAG+TGG | - | chr4_4:15487582-15487601 | Msa0671720:intron | 40.0% | |
| AGCAAAATTCAAAGGTCCAC+TGG | + | chr4_4:15487601-15487620 | None:intergenic | 40.0% | |
| TTGGGGACTAAAAGATGAAC+TGG | + | chr4_4:15487887-15487906 | None:intergenic | 40.0% | |
| ATGTTGGATCCCATTTCAGA+AGG | - | chr4_4:15488142-15488161 | Msa0671720:intron | 40.0% | |
| TGACAACAAGGTGATCTTGA+CGG | - | chr4_4:15488183-15488202 | Msa0671720:intron | 40.0% | |
| !! | ATCTTGACGGAAGGTTTTGA+TGG | - | chr4_4:15488196-15488215 | Msa0671720:intron | 40.0% |
| GTGTGCATGGGACATACAAA+CGG | - | chr4_4:15486922-15486941 | Msa0671720:intron | 45.0% | |
| TGGGACATACAAACGGAACT+TGG | - | chr4_4:15486929-15486948 | Msa0671720:intron | 45.0% | |
| TTGGACTCGATTCTAGCATC+TGG | - | chr4_4:15486948-15486967 | Msa0671720:intron | 45.0% | |
| TCTCGTGGTTTACCAACAGA+TGG | - | chr4_4:15487005-15487024 | Msa0671720:intron | 45.0% | |
| CTACTCCCCCATTAAAACTC+TGG | + | chr4_4:15487368-15487387 | None:intergenic | 45.0% | |
| AACAAGGTGATCTTGACGGA+AGG | - | chr4_4:15488187-15488206 | Msa0671720:intron | 45.0% | |
| CAGGCCATGATTCTATCTTC+TGG | + | chr4_4:15488243-15488262 | None:intergenic | 45.0% | |
| CAGAAGATAGAATCATGGCC+TGG | - | chr4_4:15488241-15488260 | Msa0671720:intron | 45.0% | |
| GTGTGCATGGGACATACAAA+CGG | - | chr4_4:15486922-15486941 | Msa0671720:intron | 45.0% | |
| TGGGACATACAAACGGAACT+TGG | - | chr4_4:15486929-15486948 | Msa0671720:intron | 45.0% | |
| TTGGACTCGATTCTAGCATC+TGG | - | chr4_4:15486948-15486967 | Msa0671720:intron | 45.0% | |
| TCTCGTGGTTTACCAACAGA+TGG | - | chr4_4:15487005-15487024 | Msa0671720:intron | 45.0% | |
| CTACTCCCCCATTAAAACTC+TGG | + | chr4_4:15487368-15487387 | None:intergenic | 45.0% | |
| AACAAGGTGATCTTGACGGA+AGG | - | chr4_4:15488187-15488206 | Msa0671720:intron | 45.0% | |
| CAGGCCATGATTCTATCTTC+TGG | + | chr4_4:15488243-15488262 | None:intergenic | 45.0% | |
| CAGAAGATAGAATCATGGCC+TGG | - | chr4_4:15488241-15488260 | Msa0671720:intron | 45.0% | |
| GGGAACTTATGGCGTAGGAA+AGG | - | chr4_4:15487309-15487328 | Msa0671720:intron | 50.0% | |
| CGACATCTCGTCTCATACCT+GGG | + | chr4_4:15487789-15487808 | None:intergenic | 50.0% | |
| TCGACATCTCGTCTCATACC+TGG | + | chr4_4:15487790-15487809 | None:intergenic | 50.0% | |
| !! | AAAGGAATGGGCTGTCTTCC+AGG | + | chr4_4:15488262-15488281 | None:intergenic | 50.0% |
| GGGAACTTATGGCGTAGGAA+AGG | - | chr4_4:15487309-15487328 | Msa0671720:intron | 50.0% | |
| CGACATCTCGTCTCATACCT+GGG | + | chr4_4:15487789-15487808 | None:intergenic | 50.0% | |
| TCGACATCTCGTCTCATACC+TGG | + | chr4_4:15487790-15487809 | None:intergenic | 50.0% | |
| !! | AAAGGAATGGGCTGTCTTCC+AGG | + | chr4_4:15488262-15488281 | None:intergenic | 50.0% |
| GGCCGGGTTCAAAATCCAGA+AGG | - | chr4_4:15487160-15487179 | Msa0671720:intron | 55.0% | |
| !! | GGGTGCCGATAGGTCCAAAT+TGG | + | chr4_4:15487557-15487576 | None:intergenic | 55.0% |
| !! | AGCGATAAAGGGGTGCCGAT+AGG | + | chr4_4:15487567-15487586 | None:intergenic | 55.0% |
| GGCCGGGTTCAAAATCCAGA+AGG | - | chr4_4:15487160-15487179 | Msa0671720:intron | 55.0% | |
| !! | GGGTGCCGATAGGTCCAAAT+TGG | + | chr4_4:15487557-15487576 | None:intergenic | 55.0% |
| !! | AGCGATAAAGGGGTGCCGAT+AGG | + | chr4_4:15487567-15487586 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 15486611 | 15488466 | 15486611 | ID=Msa0671720;Name=Msa0671720 |
| chr4_4 | mRNA | 15486611 | 15488466 | 15486611 | ID=Msa0671720-mRNA-1;Parent=Msa0671720;Name=Msa0671720-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|1|0.75|1|1|1|4|181|119 |
| chr4_4 | exon | 15486611 | 15486916 | 15486611 | ID=Msa0671720-mRNA-1:exon:4694;Parent=Msa0671720-mRNA-1 |
| chr4_4 | exon | 15487230 | 15487286 | 15487230 | ID=Msa0671720-mRNA-1:exon:4693;Parent=Msa0671720-mRNA-1 |
| chr4_4 | exon | 15488036 | 15488158 | 15488036 | ID=Msa0671720-mRNA-1:exon:4692;Parent=Msa0671720-mRNA-1 |
| chr4_4 | exon | 15488412 | 15488466 | 15488412 | ID=Msa0671720-mRNA-1:exon:4691;Parent=Msa0671720-mRNA-1 |
| chr4_4 | CDS | 15488412 | 15488466 | 15488412 | ID=Msa0671720-mRNA-1:cds;Parent=Msa0671720-mRNA-1 |
| chr4_4 | CDS | 15488036 | 15488158 | 15488036 | ID=Msa0671720-mRNA-1:cds;Parent=Msa0671720-mRNA-1 |
| chr4_4 | CDS | 15487230 | 15487286 | 15487230 | ID=Msa0671720-mRNA-1:cds;Parent=Msa0671720-mRNA-1 |
| chr4_4 | CDS | 15486792 | 15486916 | 15486792 | ID=Msa0671720-mRNA-1:cds;Parent=Msa0671720-mRNA-1 |
| chr4_4 | three_prime_UTR | 15486611 | 15486791 | 15486611 | ID=Msa0671720-mRNA-1:three_prime_utr;Parent=Msa0671720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
