AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672330 MtrunA17_Chr4g0014901 84.615 624 46 7 1 603 1 595 0.0 908
Msa0672330 MtrunA17_Chr3g0131071 55.323 526 185 9 79 587 64 556 0.0 533
Msa0672330 MtrunA17_Chr8g0385291 62.500 416 132 7 201 598 88 497 0.0 520
Msa0672330 MtrunA17_Chr4g0014911 60.580 345 119 2 276 603 121 465 5.07e-141 417
Msa0672330 MtrunA17_Chr2g0293201 49.267 341 153 5 277 598 124 463 7.30e-113 345
Msa0672330 MtrunA17_Chr4g0004981 47.892 332 156 6 277 592 107 437 2.03e-106 328
Msa0672330 MtrunA17_Chr1g0183881 38.624 378 193 9 245 598 101 463 4.33e-86 276
Msa0672330 MtrunA17_Chr7g0243541 43.533 317 142 7 280 592 101 384 7.60e-82 263
Msa0672330 MtrunA17_Chr8g0385681 31.884 207 123 6 289 485 47 245 2.51e-17 82.0
Msa0672330 MtrunA17_Chr8g0385691 31.132 212 118 8 289 485 44 242 1.41e-16 80.1
Msa0672330 MtrunA17_Chr3g0131581 27.907 215 121 7 289 485 64 262 7.27e-16 78.2
Msa0672330 MtrunA17_Chr3g0144911 29.224 219 120 9 294 485 110 320 4.83e-15 77.8
Msa0672330 MtrunA17_Chr4g0035381 25.794 252 150 7 265 485 49 294 1.31e-14 76.3
Msa0672330 MtrunA17_Chr1g0155521 26.432 227 135 6 285 485 102 322 1.61e-13 73.6
Msa0672330 MtrunA17_Chr4g0035391 25.806 217 130 6 294 485 107 317 2.51e-13 73.2
Msa0672330 MtrunA17_Chr8g0372651 25.957 235 140 7 285 492 69 296 9.16e-12 67.8
Msa0672330 MtrunA17_Chr5g0425421 29.064 203 105 7 291 471 45 230 1.91e-11 65.9
Msa0672330 MtrunA17_Chr3g0144891 24.424 217 133 5 294 485 97 307 2.55e-11 66.6
Msa0672330 MtrunA17_Chr7g0236461 25.110 227 138 6 285 485 90 310 6.36e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672330 AT4G09160.2 62.647 340 110 2 280 602 302 641 1.63e-156 464
Msa0672330 AT4G09160.1 62.647 340 110 2 280 602 327 666 1.73e-156 464
Msa0672330 AT4G09160.3 62.647 340 110 2 280 602 302 641 2.54e-156 463
Msa0672330 AT1G72160.1 50.000 492 215 7 128 601 12 490 3.58e-150 442
Msa0672330 AT1G22530.1 53.708 391 147 7 224 598 309 681 4.72e-134 407
Msa0672330 AT1G22530.2 53.708 391 147 7 224 598 275 647 5.76e-134 406
Msa0672330 AT1G72150.1 52.404 416 171 8 202 598 165 572 1.47e-124 379
Msa0672330 AT3G51670.1 46.951 328 158 6 280 592 69 395 9.98e-102 315
Msa0672330 AT4G39170.1 28.814 236 132 10 285 492 98 325 2.09e-14 77.0
Msa0672330 AT4G39170.2 28.814 236 132 10 285 492 98 325 2.26e-14 76.6
Msa0672330 AT2G21520.2 26.809 235 138 8 285 492 104 331 4.24e-14 75.9
Msa0672330 AT2G21520.3 26.809 235 138 8 285 492 104 331 4.24e-14 75.9
Msa0672330 AT2G21520.1 26.809 235 138 8 285 492 100 327 4.52e-14 75.9
Msa0672330 AT4G08690.2 27.237 257 150 9 253 490 5 243 4.69e-14 73.6
Msa0672330 AT4G08690.1 27.237 257 150 9 253 490 5 243 4.69e-14 73.6
Msa0672330 AT4G08690.3 27.237 257 150 9 253 490 5 243 4.69e-14 73.6
Msa0672330 AT4G34580.2 25.688 218 129 6 294 485 88 298 4.99e-14 75.5
Msa0672330 AT4G34580.1 25.688 218 129 6 294 485 88 298 4.99e-14 75.5
Msa0672330 AT2G16380.2 28.571 231 129 10 285 487 78 300 2.66e-13 73.2
Msa0672330 AT2G16380.1 28.571 231 129 10 285 487 78 300 2.66e-13 73.2
Msa0672330 AT1G01630.1 26.667 210 130 7 289 485 47 245 2.97e-13 70.5
Msa0672330 AT2G21540.3 25.806 217 130 5 294 485 95 305 4.11e-13 72.4
Msa0672330 AT2G21540.5 25.806 217 130 5 294 485 95 305 4.11e-13 72.4
Msa0672330 AT2G21540.6 25.806 217 130 5 294 485 95 305 4.20e-13 72.4
Msa0672330 AT2G21540.2 25.806 217 130 5 294 485 95 305 4.20e-13 72.4
Msa0672330 AT2G21540.1 25.806 217 130 5 294 485 95 305 4.20e-13 72.4
Msa0672330 AT2G21540.4 25.806 217 130 5 294 485 95 305 4.20e-13 72.4
Msa0672330 AT1G19650.1 26.339 224 134 6 294 492 104 321 1.39e-12 71.2
Msa0672330 AT3G24840.1 25.926 216 129 7 295 485 104 313 1.82e-12 70.5
Msa0672330 AT3G24840.6 25.926 216 129 7 295 485 104 313 1.82e-12 70.5
Msa0672330 AT3G24840.4 25.926 216 129 7 295 485 104 313 1.82e-12 70.5
Msa0672330 AT3G24840.2 25.926 216 129 7 295 485 104 313 1.82e-12 70.5
Msa0672330 AT3G24840.7 25.926 216 129 7 295 485 104 313 1.84e-12 70.5
Msa0672330 AT3G24840.3 25.926 216 129 7 295 485 104 313 1.84e-12 70.5
Msa0672330 AT3G24840.5 25.926 216 129 7 295 485 104 313 1.84e-12 70.5
Msa0672330 AT1G22180.2 27.273 220 130 7 291 494 45 250 7.95e-12 67.0
Msa0672330 AT1G22180.4 27.273 220 130 7 291 494 45 250 7.95e-12 67.0
Msa0672330 AT1G19650.3 26.339 224 134 6 294 492 104 321 2.40e-11 66.6
Msa0672330 AT1G75170.2 26.906 223 110 7 291 485 43 240 5.92e-11 64.3
Msa0672330 AT1G75170.1 26.906 223 110 7 291 485 43 240 5.92e-11 64.3

Find 157 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTATTGTGAAGGTTAT+TGG 0.172143 4_4:+17194278 Msa0672330:three_prime_UTR
ACCTGTTTGGCAACAAATTC+AGG 0.209976 4_4:-17192797 None:intergenic
CCGTTGGTGGATTCAGTCTT+TGG 0.228758 4_4:+17192522 Msa0672330:CDS
ACTTTCTTCTCAGCAGCTTT+AGG 0.232800 4_4:-17191239 None:intergenic
ATTTCACATTGACAAGAAAA+AGG 0.235592 4_4:+17194228 Msa0672330:three_prime_UTR
GGTTGTTCACCTTCCGTAAC+TGG 0.276686 4_4:-17191443 None:intergenic
AGCAGTAGTTGAAGAGAAAA+AGG 0.282779 4_4:+17191184 Msa0672330:CDS
CCTGTTTATTACAACGTCTT+TGG 0.287421 4_4:+17192433 Msa0672330:CDS
GAAAAGGGTTTCAGCAGATT+TGG 0.294256 4_4:-17193044 None:intergenic
TACCAGAGGAAGTTGAAATA+TGG 0.296782 4_4:+17191507 Msa0672330:CDS
AAGAGCAAATTTGTATTTGC+TGG 0.298998 4_4:+17193016 Msa0672330:CDS
TCAGGTTCAGGTGCTTTGAC+TGG 0.302986 4_4:-17191071 None:intergenic
CCAAAGACGTTGTAATAAAC+AGG 0.310116 4_4:-17192433 None:intergenic
GCAGACTCTTCAGTTGCTTC+AGG 0.317904 4_4:+17192766 Msa0672330:CDS
ACATTATTGTGAAGGTTATT+GGG 0.322782 4_4:+17194279 Msa0672330:three_prime_UTR
GAGCAAGTGCCGGTTAAATA+TGG 0.332028 4_4:+17193631 Msa0672330:CDS
TGCAGAAAAGTACTTTGGTT+TGG 0.334849 4_4:+17193955 Msa0672330:intron
TTTGCAGCTACTTCAGGTTC+AGG 0.340124 4_4:-17191083 None:intergenic
CAGGTTCAGGTGCTTTGACT+GGG 0.342256 4_4:-17191070 None:intergenic
TCCTGAATTTGTTGCCAAAC+AGG 0.344552 4_4:+17192796 Msa0672330:CDS
CTTTGGTGAGTTTGAGGATA+AGG 0.345288 4_4:+17192450 Msa0672330:CDS
TGCTCGATGGAGAACACAAT+TGG 0.352362 4_4:+17194470 Msa0672330:three_prime_UTR
TGATATTAGGGTTAAGGTTA+AGG 0.356176 4_4:-17190637 None:intergenic
AAGAAGATCTTGGAACTGAT+TGG 0.360586 4_4:+17192368 Msa0672330:CDS
AAAAGAGTGATATGATATTA+GGG 0.361161 4_4:-17190649 None:intergenic
GCTTTGACTGGGGCGGGTGG+AGG 0.361603 4_4:-17191059 None:intergenic
CTCAGAGATGGGTATGGTCT+TGG 0.367506 4_4:-17194189 None:intergenic
AAGAAAGGACTTACTTGAAA+AGG 0.368124 4_4:-17193060 None:intergenic
GTGATATGATATTAGGGTTA+AGG 0.369926 4_4:-17190643 None:intergenic
GCACTTCTTCAAGAAGATCT+TGG 0.371147 4_4:+17192358 Msa0672330:CDS
TGATCAAACAAACCGTGATT+TGG 0.374965 4_4:+17191621 Msa0672330:CDS
AGTTGGAGACAATTGGGCTT+TGG 0.375273 4_4:-17190539 None:intergenic
TCAGCAACGGGTTCCGCAAC+GGG 0.375282 4_4:-17191464 None:intergenic
GCAGAAAAGTACTTTGGTTT+GGG 0.375472 4_4:+17193956 Msa0672330:intron
CCCCATATTTCAACTTCCTC+TGG 0.377231 4_4:-17191509 None:intergenic
GTTGGAGACAATTGGGCTTT+GGG 0.379074 4_4:-17190538 None:intergenic
TGCTCTTAGTCCTTTGTGTC+AGG 0.380418 4_4:-17193000 None:intergenic
ATGGTGAGTATAACCTTTCC+AGG 0.382838 4_4:-17194125 None:intergenic
ACCTTCAAAGTCGGCGAACC+TGG 0.382877 4_4:+17194107 Msa0672330:CDS
AGTCTTTGGAGAAAAGTGTT+AGG 0.391795 4_4:+17192536 Msa0672330:CDS
GTTGTGGCCACTTCTTCAGC+AGG 0.401875 4_4:-17190708 None:intergenic
GGCAGCGGTAACGGCGGCAG+CGG 0.410369 4_4:-17190784 None:intergenic
TATCTCAAATAAAAGGAATT+CGG 0.410385 4_4:+17192328 Msa0672330:intron
CTCAGTCCTCCATATTTAAC+CGG 0.412116 4_4:-17193640 None:intergenic
GTGAGAGATGGGTTTGAAGT+TGG 0.414259 4_4:-17190556 None:intergenic
CAACGTCTTTGGTGAGTTTG+AGG 0.415799 4_4:+17192444 Msa0672330:CDS
CTGTTTCTCACCTCAGACAC+TGG 0.416068 4_4:-17193748 None:intergenic
CTCAGCAGCTTTAGGTTCCT+CGG 0.416167 4_4:-17191231 None:intergenic
GCTCGATGGAGAACACAATT+GGG 0.418706 4_4:+17194471 Msa0672330:three_prime_UTR
ACCAGAGGAAGTTGAAATAT+GGG 0.422351 4_4:+17191508 Msa0672330:CDS
GGTTTGAAGTTGGAGACAAT+TGG 0.425826 4_4:-17190546 None:intergenic
CTTGGATGTTTGGTTATCAA+TGG 0.426352 4_4:-17194144 None:intergenic
TCCAGGTTCGCCGACTTTGA+AGG 0.428840 4_4:-17194108 None:intergenic
ATCAGTGGTGGCAGCGGTAA+CGG 0.429611 4_4:-17190793 None:intergenic
TTCTCAAATTCTTGAGAGCT+AGG 0.429830 4_4:+17191570 Msa0672330:CDS
ATAGAGAGAGTGTGAGAGAT+GGG 0.432070 4_4:-17190567 None:intergenic
TGCTGATGAGGCGGAGAAGC+CGG 0.438723 4_4:+17190839 Msa0672330:CDS
TTTGTTTCAAGTATGGGGTT+GGG 0.439847 4_4:+17194359 Msa0672330:three_prime_UTR
CATAGTATCTGTTCCAGTTA+CGG 0.441670 4_4:+17191430 Msa0672330:CDS
TCAGGTGCTTTGACTGGGGC+GGG 0.442030 4_4:-17191065 None:intergenic
GGGAAGTAAGAGTTGTGGAT+TGG 0.444817 4_4:+17193976 Msa0672330:CDS
AGAAGATCTTGGAACTGATT+GGG 0.446509 4_4:+17192369 Msa0672330:CDS
TTCTCCGCCTCATCAGCAAC+AGG 0.448387 4_4:-17190834 None:intergenic
TGAAAGCAAGGTTTCTCAAT+CGG 0.448952 4_4:+17190920 Msa0672330:CDS
TATTTAACCGGCACTTGCTC+AGG 0.449531 4_4:-17193628 None:intergenic
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_4:+17191268 Msa0672330:CDS
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_4:+17191310 Msa0672330:CDS
TTGATAGTAACCTCAGTAGC+AGG 0.455020 4_4:-17193697 None:intergenic
GTTTGAAGTTGGAGACAATT+GGG 0.455980 4_4:-17190545 None:intergenic
AAACTCGACTTTGCTCCATC+TGG 0.458406 4_4:+17192559 Msa0672330:CDS
GTAACCTCCACTTCAGCAAC+GGG 0.461927 4_4:-17191476 None:intergenic
TGCGGAACCCGTTGCTGAAG+TGG 0.462615 4_4:+17191469 Msa0672330:CDS
GACTGGGGCGGGTGGAGGAG+CGG 0.473624 4_4:-17191054 None:intergenic
AGAAAGGACTTACTTGAAAA+GGG 0.480833 4_4:-17193059 None:intergenic
TATAGAGAGAGTGTGAGAGA+TGG 0.481174 4_4:-17190568 None:intergenic
CTCCTTTCATCAGCTAGTAA+TGG 0.482331 4_4:-17191536 None:intergenic
CTGTGATAATCCAAAAGAAC+AGG 0.485770 4_4:+17194048 Msa0672330:CDS
GAATGTGCAGAAAAGTACTT+TGG 0.486084 4_4:+17193950 Msa0672330:intron
TACCGCTGCCACCACTGATA+AGG 0.488762 4_4:+17190797 Msa0672330:CDS
CGAAGAAAAGAAAGAAGAAG+TGG 0.488934 4_4:+17191142 Msa0672330:CDS
GGCGGAGAAGCCGGCAGAAG+TGG 0.492001 4_4:+17190848 Msa0672330:CDS
TGTTGTTGAGAAAGAACAAC+AGG 0.496108 4_4:+17190743 Msa0672330:CDS
AGGACTGATCATCCTAGAAA+AGG 0.500229 4_4:-17192975 None:intergenic
GGTGCTTTGACTGGGGCGGG+TGG 0.500992 4_4:-17191062 None:intergenic
TTCAGGTGCTTTGACTGGGG+CGG 0.502005 4_4:-17191066 None:intergenic
AATCCACCAACGGATGAACT+TGG 0.505372 4_4:-17192512 None:intergenic
TCTCAAATTCTTGAGAGCTA+GGG 0.509514 4_4:+17191571 Msa0672330:CDS
CACTGCTGACCCTGCTACTG+AGG 0.513798 4_4:+17193687 Msa0672330:CDS
AACAGGGTGACCTTCCTTGT+CGG 0.518125 4_4:-17192416 None:intergenic
TATTGTGAAGGTTATTGGGT+GGG 0.521406 4_4:+17194283 Msa0672330:three_prime_UTR
AAGGGTTTCAGCAGATTTGG+AGG 0.522395 4_4:-17193041 None:intergenic
CAAAGTCGGCGAACCTGGAA+AGG 0.527982 4_4:+17194112 Msa0672330:CDS
TTCAGCAACGGGTTCCGCAA+CGG 0.528354 4_4:-17191465 None:intergenic
TCAATATTCTTGAATTAATG+TGG 0.530996 4_4:+17194410 Msa0672330:three_prime_UTR
TGAATGAAACCTTTGCTCGA+TGG 0.532359 4_4:+17194457 Msa0672330:three_prime_UTR
TGCTGATCCTGTTGCTGATG+AGG 0.538781 4_4:+17190827 Msa0672330:CDS
GGTCAATAACATTATTGTGA+AGG 0.539647 4_4:+17194271 Msa0672330:three_prime_UTR
GGCAGAAGTGGTGGCTGATG+TGG 0.542195 4_4:+17190860 Msa0672330:CDS
TTCCTTATCAGTGGTGGCAG+CGG 0.542972 4_4:-17190799 None:intergenic
ACATCAGCCACCACTTCTGC+CGG 0.546778 4_4:-17190858 None:intergenic
GCTTTCTTGAATAGCTTCAA+CGG 0.554411 4_4:-17191408 None:intergenic
ACCTGAAAAGGAGAAGAAAG+TGG 0.555540 4_4:+17191322 Msa0672330:CDS
TAAAGCTGCTGAGAAGAAAG+TGG 0.559749 4_4:+17191241 Msa0672330:CDS
AGGTTCAGGTGCTTTGACTG+GGG 0.560022 4_4:-17191069 None:intergenic
CTCGATGGAGAACACAATTG+GGG 0.564076 4_4:+17194472 Msa0672330:three_prime_UTR
TGAAAAGGAGGAGAAGAAAG+TGG 0.565300 4_4:+17191283 Msa0672330:CDS
TCAACTTCCTCTGGTACAGT+AGG 0.566190 4_4:-17191500 None:intergenic
TTAGTCCTTTGTGTCAGGAA+AGG 0.568368 4_4:-17192995 None:intergenic
TTCCATTACTAGCTGATGAA+AGG 0.569337 4_4:+17191534 Msa0672330:CDS
AAATACCTTTCGCCAAATCA+CGG 0.570629 4_4:-17191633 None:intergenic
AGTAACCTCCACTTCAGCAA+CGG 0.570780 4_4:-17191477 None:intergenic
GGAGAAGCCGGCAGAAGTGG+TGG 0.572616 4_4:+17190851 Msa0672330:CDS
TATGGAGGACTGAGCAGAGA+GGG 0.576578 4_4:+17193649 Msa0672330:CDS
GTGTATCCATCTTCAGCACT+AGG 0.577666 4_4:-17194026 None:intergenic
AACAGTTTCAGAGCTTGTTG+TGG 0.578262 4_4:-17190724 None:intergenic
GAGAAAGAACAACAGGCTGA+TGG 0.581051 4_4:+17190750 Msa0672330:CDS
ACAAACCGTGATTTGGCGAA+AGG 0.583208 4_4:+17191628 Msa0672330:CDS
TTGTGTTCTCCATCGAGCAA+AGG 0.583320 4_4:-17194466 None:intergenic
TATAGCTCCTGAGCAAGTGC+CGG 0.584482 4_4:+17193621 Msa0672330:CDS
GAACCAAGTTCATCCGTTGG+TGG 0.591283 4_4:+17192509 Msa0672330:CDS
TTATTGTGAAGGTTATTGGG+TGG 0.594403 4_4:+17194282 Msa0672330:three_prime_UTR
AAAGGAGGAGAAGAAAGTGG+AGG 0.596371 4_4:+17191286 Msa0672330:CDS
TTTGTGCCTAGTGCTGAAGA+TGG 0.598417 4_4:+17194020 Msa0672330:CDS
TGTTTCTCACCTCAGACACT+GGG 0.599577 4_4:-17193747 None:intergenic
AACAGCTTCCTTATCAGTGG+TGG 0.602369 4_4:-17190805 None:intergenic
TGTTGTAGAACCTGAAAAGG+AGG 0.605095 4_4:+17191271 Msa0672330:CDS
GTGGATTGGAATGTGAGCTA+TGG 0.605535 4_4:+17193990 Msa0672330:CDS
ACAAGAGTAGAGATGCCAGA+TGG 0.607854 4_4:-17192574 None:intergenic
GGTTTGGGAAGTAAGAGTTG+TGG 0.609162 4_4:+17193971 Msa0672330:CDS
ATTAGCAACACCTTCAAAGT+CGG 0.613493 4_4:+17194098 Msa0672330:CDS
TGTTGAGTTCCCAGTGTCTG+AGG 0.614191 4_4:+17193738 Msa0672330:CDS
CCAGAGGAAGTTGAAATATG+GGG 0.622025 4_4:+17191509 Msa0672330:CDS
GGCTGATGTGGAGAAAGAAA+AGG 0.623341 4_4:+17190872 Msa0672330:CDS
TGTTGTTGTTGATGAAAGCA+AGG 0.624542 4_4:+17190908 Msa0672330:CDS
AGCAACAGCTTCCTTATCAG+TGG 0.627494 4_4:-17190808 None:intergenic
AGAGAACCAAGTTCATCCGT+TGG 0.628342 4_4:+17192506 Msa0672330:CDS
TGATAGTAACCTCAGTAGCA+GGG 0.629245 4_4:-17193696 None:intergenic
CTCAGTAGCAGGGTCAGCAG+TGG 0.635942 4_4:-17193686 None:intergenic
TGATCATCCTAGAAAAGGCA+AGG 0.637343 4_4:-17192970 None:intergenic
CAAGTGCCGGTTAAATATGG+AGG 0.638383 4_4:+17193634 Msa0672330:CDS
AGCTGCTGAGAAGAAAGTGG+AGG 0.643861 4_4:+17191244 Msa0672330:CDS
TGATCCTGTTGCTGATGAGG+CGG 0.646157 4_4:+17190830 Msa0672330:CDS
GTATCTGTTCCAGTTACGGA+AGG 0.647645 4_4:+17191434 Msa0672330:CDS
CAAAGACGTTGTAATAAACA+GGG 0.655324 4_4:-17192432 None:intergenic
GGAACCCGTTGCTGAAGTGG+AGG 0.658824 4_4:+17191472 Msa0672330:CDS
AGTGGTGGCAGCGGTAACGG+CGG 0.658833 4_4:-17190790 None:intergenic
TCAGTCCTTTCCTGACACAA+AGG 0.662629 4_4:+17192990 Msa0672330:CDS
ACTGATGGTACCGACAAGGA+AGG 0.663388 4_4:+17192406 Msa0672330:CDS
GGTTACTCCTACTGTACCAG+AGG 0.664697 4_4:+17191493 Msa0672330:CDS
GCTGCAAGTACCGAAGAAGA+CGG 0.668808 4_4:+17191377 Msa0672330:CDS
CCAAAGACTGAATCCACCAA+CGG 0.670341 4_4:-17192522 None:intergenic
TTTCACTGATGGTACCGACA+AGG 0.694866 4_4:+17192402 Msa0672330:CDS
GGAAGGTGAACAACCCGTTG+CGG 0.707886 4_4:+17191451 Msa0672330:CDS
TGATGTGGAGAAAGAAAAGG+TGG 0.713400 4_4:+17190875 Msa0672330:CDS
AGCAGCTTTAGGTTCCTCGG+AGG 0.718138 4_4:-17191228 None:intergenic
ATATGGAGGACTGAGCAGAG+AGG 0.746849 4_4:+17193648 Msa0672330:CDS
GAAAAGGCAAGGTACCACCA+AGG 0.749307 4_4:-17192959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTACTGA+AGG + chr4_4:17192267-17192286 Msa0672330:intron 10.0%
!!! TTTTTTTTTTTTTTACTGAA+GGG + chr4_4:17192268-17192287 Msa0672330:intron 10.0%
!!! TTTTTTCATATCAAATCAAA+TGG + chr4_4:17190668-17190687 Msa0672330:exon 15.0%
!!! TTCTTCTATTTTATTCAATA+GGG - chr4_4:17192124-17192143 None:intergenic 15.0%
!!! TTTCTTCTATTTTATTCAAT+AGG - chr4_4:17192125-17192144 None:intergenic 15.0%
!!! TGTATTTTCAAACAATTTTT+TGG + chr4_4:17193510-17193529 Msa0672330:intron 15.0%
!!! AATCTTATTTTCTTAAATTG+TGG + chr4_4:17193788-17193807 Msa0672330:intron 15.0%
!! AATTATGAATATAAAGATCA+CGG - chr4_4:17193910-17193929 None:intergenic 15.0%
!!! GTTACTTATATTCTTTTATA+GGG + chr4_4:17194305-17194324 Msa0672330:three_prime_UTR 15.0%
!!! ATTATATTTTGTTTCAAGTA+TGG + chr4_4:17194352-17194371 Msa0672330:three_prime_UTR 15.0%
!!! TTATATTTTGTTTCAAGTAT+GGG + chr4_4:17194353-17194372 Msa0672330:three_prime_UTR 15.0%
!! AGAAAGAAAAAGTGATATTA+GGG - chr4_4:17190611-17190630 None:intergenic 20.0%
!! AAGAAAGAAAAAGTGATATT+AGG - chr4_4:17190612-17190631 None:intergenic 20.0%
!! AAAAGAGTGATATGATATTA+GGG - chr4_4:17190652-17190671 None:intergenic 20.0%
!! AAAAAGAGTGATATGATATT+AGG - chr4_4:17190653-17190672 None:intergenic 20.0%
!! ACACTTATTAAACACTAATA+AGG + chr4_4:17191744-17191763 Msa0672330:intron 20.0%
!! CACTTATTAAACACTAATAA+GGG + chr4_4:17191745-17191764 Msa0672330:intron 20.0%
!! CATTCAATTAATGATGTATA+TGG + chr4_4:17191998-17192017 Msa0672330:intron 20.0%
!! TTAACATTAAATGTTGTATG+TGG - chr4_4:17192037-17192056 None:intergenic 20.0%
!! TCTAGATAATCAAATGTATT+TGG + chr4_4:17192159-17192178 Msa0672330:intron 20.0%
!! AAAAACAATTCATATGTAGT+TGG - chr4_4:17192198-17192217 None:intergenic 20.0%
!! CTTATTGTATCTCAAATAAA+AGG + chr4_4:17192321-17192340 Msa0672330:intron 20.0%
!! TATCTCAAATAAAAGGAATT+CGG + chr4_4:17192328-17192347 Msa0672330:intron 20.0%
!!! TTTTAGAATAATTACCTGTT+TGG - chr4_4:17192813-17192832 None:intergenic 20.0%
!!! TCATTTGTGTTTTTTTTACA+TGG + chr4_4:17192848-17192867 Msa0672330:intron 20.0%
!! ACTAATATGATTGCTTAATT+TGG + chr4_4:17192892-17192911 Msa0672330:intron 20.0%
!! TATGATGAAATCACTAAAAA+AGG - chr4_4:17193088-17193107 None:intergenic 20.0%
!!! AAATTTAAAACCTTGTAAGT+TGG - chr4_4:17193180-17193199 None:intergenic 20.0%
!! AGCTCTTATTGATAAATATT+TGG + chr4_4:17193587-17193606 Msa0672330:intron 20.0%
!!! GGTTACTTATATTCTTTTAT+AGG + chr4_4:17194304-17194323 Msa0672330:three_prime_UTR 20.0%
!!! TATATTTTGTTTCAAGTATG+GGG + chr4_4:17194354-17194373 Msa0672330:three_prime_UTR 20.0%
!! TCAATATTCTTGAATTAATG+TGG + chr4_4:17194410-17194429 Msa0672330:three_prime_UTR 20.0%
! AAAAAGGTTGAAGAAGAAAA+AGG + chr4_4:17191200-17191219 Msa0672330:CDS 25.0%
! TATAAGCTATTTACTCAAAC+AGG - chr4_4:17191718-17191737 None:intergenic 25.0%
! GTTTATGTTAATAATTACGC+CGG + chr4_4:17191905-17191924 Msa0672330:intron 25.0%
! CAAATAAGTCAATTCTTACA+CGG + chr4_4:17191930-17191949 Msa0672330:intron 25.0%
!!! AGGGAGTATTTTTTTGTTAT+TGG + chr4_4:17192287-17192306 Msa0672330:intron 25.0%
! AATGATCTTAAAAATTCTCC+TGG + chr4_4:17192704-17192723 Msa0672330:intron 25.0%
! ATTATTATGACCAACTTACA+AGG + chr4_4:17193167-17193186 Msa0672330:intron 25.0%
!! TTATTATTTGAAACTACACG+AGG + chr4_4:17193242-17193261 Msa0672330:intron 25.0%
! CTTAAAAAACCTTGATATTG+TGG + chr4_4:17193385-17193404 Msa0672330:intron 25.0%
!! TAAGATTTTATAGGAAGTCT+AGG - chr4_4:17193424-17193443 None:intergenic 25.0%
!!! AAACAATTTTTTGGACCTTT+AGG + chr4_4:17193519-17193538 Msa0672330:intron 25.0%
! ATTTCACATTGACAAGAAAA+AGG + chr4_4:17194228-17194247 Msa0672330:three_prime_UTR 25.0%
! TTTCACATTGACAAGAAAAA+GGG + chr4_4:17194229-17194248 Msa0672330:three_prime_UTR 25.0%
!! GGTGTTTTGTATTCATTATA+AGG + chr4_4:17194250-17194269 Msa0672330:three_prime_UTR 25.0%
! AACATTATTGTGAAGGTTAT+TGG + chr4_4:17194278-17194297 Msa0672330:three_prime_UTR 25.0%
! ACATTATTGTGAAGGTTATT+GGG + chr4_4:17194279-17194298 Msa0672330:three_prime_UTR 25.0%
!! ATAGGGATATTTTCTTCATT+TGG + chr4_4:17194322-17194341 Msa0672330:three_prime_UTR 25.0%
!! GGTATTTTGTTCTTTTGTAT+TGG + chr4_4:17194431-17194450 Msa0672330:three_prime_UTR 25.0%
TGATATTAGGGTTAAGGTTA+AGG - chr4_4:17190640-17190659 None:intergenic 30.0%
GTGATATGATATTAGGGTTA+AGG - chr4_4:17190646-17190665 None:intergenic 30.0%
!! TTCTCAATCGGTTTCTTTTA+AGG + chr4_4:17190932-17190951 Msa0672330:CDS 30.0%
!! TTTTAAGGAAGAAACTAACG+TGG + chr4_4:17190947-17190966 Msa0672330:CDS 30.0%
! CACTTCTTCTTTCTTTTCTT+CGG - chr4_4:17191144-17191163 None:intergenic 30.0%
AAAAAGCTTATAAGCTCTTC+AGG - chr4_4:17191854-17191873 None:intergenic 30.0%
! AAGAATTGACTTATTTGTGC+CGG - chr4_4:17191927-17191946 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr4_4:17191963-17191982 None:intergenic 30.0%
CAAAGACGTTGTAATAAACA+GGG - chr4_4:17192435-17192454 None:intergenic 30.0%
GCAAACAGAAACAAAACAAA+AGG - chr4_4:17192920-17192939 None:intergenic 30.0%
! AGATTTTCATCAATGTTCCT+TGG + chr4_4:17192942-17192961 Msa0672330:intron 30.0%
AAGAGCAAATTTGTATTTGC+TGG + chr4_4:17193016-17193035 Msa0672330:CDS 30.0%
AGAAAGGACTTACTTGAAAA+GGG - chr4_4:17193062-17193081 None:intergenic 30.0%
AAGAAAGGACTTACTTGAAA+AGG - chr4_4:17193063-17193082 None:intergenic 30.0%
TCACTAAAAAAGGTGAAGAA+AGG - chr4_4:17193078-17193097 None:intergenic 30.0%
!!! TTTTTTAGCCCATAAGAAGA+AGG + chr4_4:17193121-17193140 Msa0672330:intron 30.0%
CAATCTAAACCACAATATCA+AGG - chr4_4:17193397-17193416 None:intergenic 30.0%
! AGCATCTCGTAAGATTTTAT+AGG - chr4_4:17193433-17193452 None:intergenic 30.0%
! TAAGCTTTTTACTCAGAGAT+GGG - chr4_4:17194203-17194222 None:intergenic 30.0%
! TTAAGCTTTTTACTCAGAGA+TGG - chr4_4:17194204-17194223 None:intergenic 30.0%
GGTCAATAACATTATTGTGA+AGG + chr4_4:17194271-17194290 Msa0672330:three_prime_UTR 30.0%
! GTTTGAAGTTGGAGACAATT+GGG - chr4_4:17190548-17190567 None:intergenic 35.0%
TGTTGTTGAGAAAGAACAAC+AGG + chr4_4:17190743-17190762 Msa0672330:CDS 35.0%
! TGTTGTTGTTGATGAAAGCA+AGG + chr4_4:17190908-17190927 Msa0672330:CDS 35.0%
TGAAAGCAAGGTTTCTCAAT+CGG + chr4_4:17190920-17190939 Msa0672330:CDS 35.0%
!!! AGTGCTTTTTTCTGAACTTC+TGG - chr4_4:17190984-17191003 None:intergenic 35.0%
! GTTTTCTTGTCATCTTCTTC+AGG - chr4_4:17191122-17191141 None:intergenic 35.0%
CGAAGAAAAGAAAGAAGAAG+TGG + chr4_4:17191142-17191161 Msa0672330:CDS 35.0%
AGCAGTAGTTGAAGAGAAAA+AGG + chr4_4:17191184-17191203 Msa0672330:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_4:17191268-17191287 Msa0672330:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_4:17191268-17191287 Msa0672330:CDS 35.0%
GCTTTCTTGAATAGCTTCAA+CGG - chr4_4:17191411-17191430 None:intergenic 35.0%
CATAGTATCTGTTCCAGTTA+CGG + chr4_4:17191430-17191449 Msa0672330:CDS 35.0%
TACCAGAGGAAGTTGAAATA+TGG + chr4_4:17191507-17191526 Msa0672330:CDS 35.0%
ACCAGAGGAAGTTGAAATAT+GGG + chr4_4:17191508-17191527 Msa0672330:CDS 35.0%
TTCCATTACTAGCTGATGAA+AGG + chr4_4:17191534-17191553 Msa0672330:CDS 35.0%
TTCTCAAATTCTTGAGAGCT+AGG + chr4_4:17191570-17191589 Msa0672330:CDS 35.0%
TCTCAAATTCTTGAGAGCTA+GGG + chr4_4:17191571-17191590 Msa0672330:CDS 35.0%
TGATCAAACAAACCGTGATT+TGG + chr4_4:17191621-17191640 Msa0672330:CDS 35.0%
AAATACCTTTCGCCAAATCA+CGG - chr4_4:17191636-17191655 None:intergenic 35.0%
AAGAAGATCTTGGAACTGAT+TGG + chr4_4:17192368-17192387 Msa0672330:CDS 35.0%
AGAAGATCTTGGAACTGATT+GGG + chr4_4:17192369-17192388 Msa0672330:CDS 35.0%
!! GACAAAGTTGTTTTCACTGA+TGG + chr4_4:17192391-17192410 Msa0672330:CDS 35.0%
CCAAAGACGTTGTAATAAAC+AGG - chr4_4:17192436-17192455 None:intergenic 35.0%
CCTGTTTATTACAACGTCTT+TGG + chr4_4:17192433-17192452 Msa0672330:CDS 35.0%
!! AGTCTTTGGAGAAAAGTGTT+AGG + chr4_4:17192536-17192555 Msa0672330:CDS 35.0%
! TTTTCATCAATGTTCCTTGG+TGG + chr4_4:17192945-17192964 Msa0672330:CDS 35.0%
AATAGCGATATGTGTGTTTG+TGG - chr4_4:17193150-17193169 None:intergenic 35.0%
ACTATATGTGTGTGCGTTTA+TGG - chr4_4:17193218-17193237 None:intergenic 35.0%
CAATTGTGACAGTTATGTCA+AGG - chr4_4:17193492-17193511 None:intergenic 35.0%
TTAATAGCGTATGCTCCTAA+AGG - chr4_4:17193537-17193556 None:intergenic 35.0%
!! TCAACAGCATGTTTTGTTGT+TGG - chr4_4:17193724-17193743 None:intergenic 35.0%
ACTGCAAACCTTTGTATTGT+GGG + chr4_4:17193827-17193846 Msa0672330:intron 35.0%
!! GAATGTGCAGAAAAGTACTT+TGG + chr4_4:17193950-17193969 Msa0672330:intron 35.0%
!! TGCAGAAAAGTACTTTGGTT+TGG + chr4_4:17193955-17193974 Msa0672330:intron 35.0%
!! GCAGAAAAGTACTTTGGTTT+GGG + chr4_4:17193956-17193975 Msa0672330:intron 35.0%
CTGTGATAATCCAAAAGAAC+AGG + chr4_4:17194048-17194067 Msa0672330:CDS 35.0%
! CAGCAATTTTCCTGTTCTTT+TGG - chr4_4:17194061-17194080 None:intergenic 35.0%
ATTAGCAACACCTTCAAAGT+CGG + chr4_4:17194098-17194117 Msa0672330:CDS 35.0%
CTTGGATGTTTGGTTATCAA+TGG - chr4_4:17194147-17194166 None:intergenic 35.0%
! GCTTCTTTTTCTTGGATGTT+TGG - chr4_4:17194157-17194176 None:intergenic 35.0%
! GTAAAGCAGCTTCTTTTTCT+TGG - chr4_4:17194165-17194184 None:intergenic 35.0%
! AGAAAAAGAAGCTGCTTTAC+AGG + chr4_4:17194165-17194184 Msa0672330:CDS 35.0%
! TTTTTACTCAGAGATGGGTA+TGG - chr4_4:17194198-17194217 None:intergenic 35.0%
TTATTGTGAAGGTTATTGGG+TGG + chr4_4:17194282-17194301 Msa0672330:three_prime_UTR 35.0%
TATTGTGAAGGTTATTGGGT+GGG + chr4_4:17194283-17194302 Msa0672330:three_prime_UTR 35.0%
!! TTTTGTTTCAAGTATGGGGT+TGG + chr4_4:17194358-17194377 Msa0672330:three_prime_UTR 35.0%
! TTTGTTTCAAGTATGGGGTT+GGG + chr4_4:17194359-17194378 Msa0672330:three_prime_UTR 35.0%
! GGTTTGAAGTTGGAGACAAT+TGG - chr4_4:17190549-17190568 None:intergenic 40.0%
! ATAGAGAGAGTGTGAGAGAT+GGG - chr4_4:17190570-17190589 None:intergenic 40.0%
! TATAGAGAGAGTGTGAGAGA+TGG - chr4_4:17190571-17190590 None:intergenic 40.0%
! ACTTCTTCAGCAGGTTTTTG+GGG - chr4_4:17190702-17190721 None:intergenic 40.0%
! CACTTCTTCAGCAGGTTTTT+GGG - chr4_4:17190703-17190722 None:intergenic 40.0%
!! AACAGTTTCAGAGCTTGTTG+TGG - chr4_4:17190727-17190746 None:intergenic 40.0%
TGATGTGGAGAAAGAAAAGG+TGG + chr4_4:17190875-17190894 Msa0672330:CDS 40.0%
! TCTTCTTTTGCAGCTACTTC+AGG - chr4_4:17191092-17191111 None:intergenic 40.0%
ACTTTCTTCTCAGCAGCTTT+AGG - chr4_4:17191242-17191261 None:intergenic 40.0%
TAAAGCTGCTGAGAAGAAAG+TGG + chr4_4:17191241-17191260 Msa0672330:CDS 40.0%
TGTTGTAGAACCTGAAAAGG+AGG + chr4_4:17191271-17191290 Msa0672330:CDS 40.0%
! ACTTTCTTCTCCTCCTTTTC+AGG - chr4_4:17191284-17191303 None:intergenic 40.0%
TGAAAAGGAGGAGAAGAAAG+TGG + chr4_4:17191283-17191302 Msa0672330:CDS 40.0%
ACCTGAAAAGGAGAAGAAAG+TGG + chr4_4:17191322-17191341 Msa0672330:CDS 40.0%
! TCCACTTTCTTCTCCTTTTC+AGG - chr4_4:17191326-17191345 None:intergenic 40.0%
CCAGAGGAAGTTGAAATATG+GGG + chr4_4:17191509-17191528 Msa0672330:CDS 40.0%
CTCCTTTCATCAGCTAGTAA+TGG - chr4_4:17191539-17191558 None:intergenic 40.0%
! CTTGAGAGCTAGGGATTTTA+AGG + chr4_4:17191580-17191599 Msa0672330:CDS 40.0%
!!! AGCTAGGGATTTTAAGGTGA+AGG + chr4_4:17191586-17191605 Msa0672330:CDS 40.0%
!!! TAGGGATTTTAAGGTGAAGG+AGG + chr4_4:17191589-17191608 Msa0672330:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_4:17191959-17191978 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_4:17191960-17191979 None:intergenic 40.0%
GCACTTCTTCAAGAAGATCT+TGG + chr4_4:17192358-17192377 Msa0672330:CDS 40.0%
CTTTGGTGAGTTTGAGGATA+AGG + chr4_4:17192450-17192469 Msa0672330:CDS 40.0%
AATTCTCCTGGACTTCTTGT+TGG + chr4_4:17192716-17192735 Msa0672330:intron 40.0%
TTCTTACCAACAAGAAGTCC+AGG - chr4_4:17192725-17192744 None:intergenic 40.0%
!! TCCTGAATTTGTTGCCAAAC+AGG + chr4_4:17192796-17192815 Msa0672330:CDS 40.0%
ACCTGTTTGGCAACAAATTC+AGG - chr4_4:17192800-17192819 None:intergenic 40.0%
TGATCATCCTAGAAAAGGCA+AGG - chr4_4:17192973-17192992 None:intergenic 40.0%
AGGACTGATCATCCTAGAAA+AGG - chr4_4:17192978-17192997 None:intergenic 40.0%
TTAGTCCTTTGTGTCAGGAA+AGG - chr4_4:17192998-17193017 None:intergenic 40.0%
GAAAAGGGTTTCAGCAGATT+TGG - chr4_4:17193047-17193066 None:intergenic 40.0%
TGTGGCAACCTTCTTCTTAT+GGG - chr4_4:17193132-17193151 None:intergenic 40.0%
TTGTGGCAACCTTCTTCTTA+TGG - chr4_4:17193133-17193152 None:intergenic 40.0%
CCATGACTACAACACAACTA+TGG - chr4_4:17193362-17193381 None:intergenic 40.0%
CCATAGTTGTGTTGTAGTCA+TGG + chr4_4:17193359-17193378 Msa0672330:intron 40.0%
CTCAGTCCTCCATATTTAAC+CGG - chr4_4:17193643-17193662 None:intergenic 40.0%
TGATAGTAACCTCAGTAGCA+GGG - chr4_4:17193699-17193718 None:intergenic 40.0%
! TTGATAGTAACCTCAGTAGC+AGG - chr4_4:17193700-17193719 None:intergenic 40.0%
CACTGCAAACCTTTGTATTG+TGG + chr4_4:17193826-17193845 Msa0672330:intron 40.0%
! GGCATTTTCCCACAATACAA+AGG - chr4_4:17193838-17193857 None:intergenic 40.0%
! AAGATCACGGTTTGAAATCG+TGG - chr4_4:17193897-17193916 None:intergenic 40.0%
ATGGTGAGTATAACCTTTCC+AGG - chr4_4:17194128-17194147 None:intergenic 40.0%
TGAATGAAACCTTTGCTCGA+TGG + chr4_4:17194457-17194476 Msa0672330:three_prime_UTR 40.0%
GTTGGAGACAATTGGGCTTT+GGG - chr4_4:17190541-17190560 None:intergenic 45.0%
AGTTGGAGACAATTGGGCTT+TGG - chr4_4:17190542-17190561 None:intergenic 45.0%
! GTGAGAGATGGGTTTGAAGT+TGG - chr4_4:17190559-17190578 None:intergenic 45.0%
! CCACTTCTTCAGCAGGTTTT+TGG - chr4_4:17190704-17190723 None:intergenic 45.0%
CCAAAAACCTGCTGAAGAAG+TGG + chr4_4:17190701-17190720 Msa0672330:CDS 45.0%
GAGAAAGAACAACAGGCTGA+TGG + chr4_4:17190750-17190769 Msa0672330:CDS 45.0%
AACAGCTTCCTTATCAGTGG+TGG - chr4_4:17190808-17190827 None:intergenic 45.0%
AGCAACAGCTTCCTTATCAG+TGG - chr4_4:17190811-17190830 None:intergenic 45.0%
GGCTGATGTGGAGAAAGAAA+AGG + chr4_4:17190872-17190891 Msa0672330:CDS 45.0%
! TTTGCAGCTACTTCAGGTTC+AGG - chr4_4:17191086-17191105 None:intergenic 45.0%
AGAAAAAGGTTCTACCTCCG+AGG + chr4_4:17191214-17191233 Msa0672330:CDS 45.0%
AAAGGAGGAGAAGAAAGTGG+AGG + chr4_4:17191286-17191305 Msa0672330:CDS 45.0%
GTATCTGTTCCAGTTACGGA+AGG + chr4_4:17191434-17191453 Msa0672330:CDS 45.0%
AGTAACCTCCACTTCAGCAA+CGG - chr4_4:17191480-17191499 None:intergenic 45.0%
TCAACTTCCTCTGGTACAGT+AGG - chr4_4:17191503-17191522 None:intergenic 45.0%
CCCCATATTTCAACTTCCTC+TGG - chr4_4:17191512-17191531 None:intergenic 45.0%
! ACAAACCGTGATTTGGCGAA+AGG + chr4_4:17191628-17191647 Msa0672330:CDS 45.0%
!! TTTCACTGATGGTACCGACA+AGG + chr4_4:17192402-17192421 Msa0672330:CDS 45.0%
CAACGTCTTTGGTGAGTTTG+AGG + chr4_4:17192444-17192463 Msa0672330:CDS 45.0%
AGAGAACCAAGTTCATCCGT+TGG + chr4_4:17192506-17192525 Msa0672330:CDS 45.0%
AATCCACCAACGGATGAACT+TGG - chr4_4:17192515-17192534 None:intergenic 45.0%
CCAAAGACTGAATCCACCAA+CGG - chr4_4:17192525-17192544 None:intergenic 45.0%
AAACTCGACTTTGCTCCATC+TGG + chr4_4:17192559-17192578 Msa0672330:CDS 45.0%
ACAAGAGTAGAGATGCCAGA+TGG - chr4_4:17192577-17192596 None:intergenic 45.0%
TCAGTCCTTTCCTGACACAA+AGG + chr4_4:17192990-17193009 Msa0672330:CDS 45.0%
TGCTCTTAGTCCTTTGTGTC+AGG - chr4_4:17193003-17193022 None:intergenic 45.0%
AAGGGTTTCAGCAGATTTGG+AGG - chr4_4:17193044-17193063 None:intergenic 45.0%
CTCCGCAATATCAAGGATTG+CGG - chr4_4:17193308-17193327 None:intergenic 45.0%
TCCTTGATATTGCGGAGTCA+TGG + chr4_4:17193311-17193330 Msa0672330:intron 45.0%
ACCATGACTCCGCAATATCA+AGG - chr4_4:17193315-17193334 None:intergenic 45.0%
TATTTAACCGGCACTTGCTC+AGG - chr4_4:17193631-17193650 None:intergenic 45.0%
!! GAGCAAGTGCCGGTTAAATA+TGG + chr4_4:17193631-17193650 Msa0672330:CDS 45.0%
!! CAAGTGCCGGTTAAATATGG+AGG + chr4_4:17193634-17193653 Msa0672330:CDS 45.0%
TGTTTCTCACCTCAGACACT+GGG - chr4_4:17193750-17193769 None:intergenic 45.0%
GGTTTGGGAAGTAAGAGTTG+TGG + chr4_4:17193971-17193990 Msa0672330:CDS 45.0%
GGGAAGTAAGAGTTGTGGAT+TGG + chr4_4:17193976-17193995 Msa0672330:CDS 45.0%
!! GTGGATTGGAATGTGAGCTA+TGG + chr4_4:17193990-17194009 Msa0672330:CDS 45.0%
! TTTGTGCCTAGTGCTGAAGA+TGG + chr4_4:17194020-17194039 Msa0672330:CDS 45.0%
GTGTATCCATCTTCAGCACT+AGG - chr4_4:17194029-17194048 None:intergenic 45.0%
TTGTGTTCTCCATCGAGCAA+AGG - chr4_4:17194469-17194488 None:intergenic 45.0%
TGCTCGATGGAGAACACAAT+TGG + chr4_4:17194470-17194489 Msa0672330:three_prime_UTR 45.0%
GCTCGATGGAGAACACAATT+GGG + chr4_4:17194471-17194490 Msa0672330:three_prime_UTR 45.0%
CTCGATGGAGAACACAATTG+GGG + chr4_4:17194472-17194491 Msa0672330:three_prime_UTR 45.0%
!! TTAATTCATATTATAAATAT+AGG + chr4_4:17191692-17191711 Msa0672330:intron 5.0%
TTCCTTATCAGTGGTGGCAG+CGG - chr4_4:17190802-17190821 None:intergenic 50.0%
TGCTGATCCTGTTGCTGATG+AGG + chr4_4:17190827-17190846 Msa0672330:CDS 50.0%
TGATCCTGTTGCTGATGAGG+CGG + chr4_4:17190830-17190849 Msa0672330:CDS 50.0%
AGGTTCAGGTGCTTTGACTG+GGG - chr4_4:17191072-17191091 None:intergenic 50.0%
CAGGTTCAGGTGCTTTGACT+GGG - chr4_4:17191073-17191092 None:intergenic 50.0%
TCAGGTTCAGGTGCTTTGAC+TGG - chr4_4:17191074-17191093 None:intergenic 50.0%
!! CTCAGCAGCTTTAGGTTCCT+CGG - chr4_4:17191234-17191253 None:intergenic 50.0%
AGCTGCTGAGAAGAAAGTGG+AGG + chr4_4:17191244-17191263 Msa0672330:CDS 50.0%
!! GCTGCAAGTACCGAAGAAGA+CGG + chr4_4:17191377-17191396 Msa0672330:CDS 50.0%
! GGTTTTTGCGCCGTCTTCTT+CGG - chr4_4:17191390-17191409 None:intergenic 50.0%
GGTTGTTCACCTTCCGTAAC+TGG - chr4_4:17191446-17191465 None:intergenic 50.0%
GTAACCTCCACTTCAGCAAC+GGG - chr4_4:17191479-17191498 None:intergenic 50.0%
GGTTACTCCTACTGTACCAG+AGG + chr4_4:17191493-17191512 Msa0672330:CDS 50.0%
ATTCTTACACGGACACCCTC+CGG + chr4_4:17191941-17191960 Msa0672330:intron 50.0%
TTATAGTAGTGACCGCCGAC+CGG + chr4_4:17192064-17192083 Msa0672330:intron 50.0%
!! ACTGATGGTACCGACAAGGA+AGG + chr4_4:17192406-17192425 Msa0672330:CDS 50.0%
AACAGGGTGACCTTCCTTGT+CGG - chr4_4:17192419-17192438 None:intergenic 50.0%
GAACCAAGTTCATCCGTTGG+TGG + chr4_4:17192509-17192528 Msa0672330:CDS 50.0%
!! CCGTTGGTGGATTCAGTCTT+TGG + chr4_4:17192522-17192541 Msa0672330:CDS 50.0%
GCAGACTCTTCAGTTGCTTC+AGG + chr4_4:17192766-17192785 Msa0672330:CDS 50.0%
! GAAAAGGCAAGGTACCACCA+AGG - chr4_4:17192962-17192981 None:intergenic 50.0%
! GGTGGTACCTTGCCTTTTCT+AGG + chr4_4:17192963-17192982 Msa0672330:CDS 50.0%
TGCGGCGCGATCATAACAAA+AGG - chr4_4:17193290-17193309 None:intergenic 50.0%
CGCCGCAATCCTTGATATTG+CGG + chr4_4:17193303-17193322 Msa0672330:intron 50.0%
TGCGGAGTCATGGTCAAATG+CGG + chr4_4:17193321-17193340 Msa0672330:intron 50.0%
TATAGCTCCTGAGCAAGTGC+CGG + chr4_4:17193621-17193640 Msa0672330:CDS 50.0%
ATATGGAGGACTGAGCAGAG+AGG + chr4_4:17193648-17193667 Msa0672330:CDS 50.0%
TATGGAGGACTGAGCAGAGA+GGG + chr4_4:17193649-17193668 Msa0672330:CDS 50.0%
TGTTGAGTTCCCAGTGTCTG+AGG + chr4_4:17193738-17193757 Msa0672330:CDS 50.0%
! CTGTTTCTCACCTCAGACAC+TGG - chr4_4:17193751-17193770 None:intergenic 50.0%
AATGCCGTTGCAATGCTGTG+TGG + chr4_4:17193852-17193871 Msa0672330:intron 50.0%
ATGCTGTGTGGCCACAGAAA+CGG + chr4_4:17193864-17193883 Msa0672330:intron 50.0%
GTGGTCAACAACCGTTTCTG+TGG - chr4_4:17193878-17193897 None:intergenic 50.0%
CTCAGAGATGGGTATGGTCT+TGG - chr4_4:17194192-17194211 None:intergenic 50.0%
GTTGTGGCCACTTCTTCAGC+AGG - chr4_4:17190711-17190730 None:intergenic 55.0%
ATCAGTGGTGGCAGCGGTAA+CGG - chr4_4:17190796-17190815 None:intergenic 55.0%
TACCGCTGCCACCACTGATA+AGG + chr4_4:17190797-17190816 Msa0672330:CDS 55.0%
TTCTCCGCCTCATCAGCAAC+AGG - chr4_4:17190837-17190856 None:intergenic 55.0%
ACATCAGCCACCACTTCTGC+CGG - chr4_4:17190861-17190880 None:intergenic 55.0%
TTCAGGTGCTTTGACTGGGG+CGG - chr4_4:17191069-17191088 None:intergenic 55.0%
!! AGCAGCTTTAGGTTCCTCGG+AGG - chr4_4:17191231-17191250 None:intergenic 55.0%
GGAAGGTGAACAACCCGTTG+CGG + chr4_4:17191451-17191470 Msa0672330:CDS 55.0%
! TTCAGCAACGGGTTCCGCAA+CGG - chr4_4:17191468-17191487 None:intergenic 55.0%
TGTACACCCTCCTGTCACTC+CGG - chr4_4:17192086-17192105 None:intergenic 55.0%
GTCATGGTCAAATGCGGCTG+AGG + chr4_4:17193327-17193346 Msa0672330:intron 55.0%
GTGGCCACACAGCATTGCAA+CGG - chr4_4:17193859-17193878 None:intergenic 55.0%
ACCTTCAAAGTCGGCGAACC+TGG + chr4_4:17194107-17194126 Msa0672330:CDS 55.0%
!! TCCAGGTTCGCCGACTTTGA+AGG - chr4_4:17194111-17194130 None:intergenic 55.0%
CAAAGTCGGCGAACCTGGAA+AGG + chr4_4:17194112-17194131 Msa0672330:CDS 55.0%
TGCTGATGAGGCGGAGAAGC+CGG + chr4_4:17190839-17190858 Msa0672330:CDS 60.0%
GGCAGAAGTGGTGGCTGATG+TGG + chr4_4:17190860-17190879 Msa0672330:CDS 60.0%
TCAGGTGCTTTGACTGGGGC+GGG - chr4_4:17191068-17191087 None:intergenic 60.0%
! TCAGCAACGGGTTCCGCAAC+GGG - chr4_4:17191467-17191486 None:intergenic 60.0%
TGCGGAACCCGTTGCTGAAG+TGG + chr4_4:17191469-17191488 Msa0672330:CDS 60.0%
GGAACCCGTTGCTGAAGTGG+AGG + chr4_4:17191472-17191491 Msa0672330:CDS 60.0%
TGGTCAAATGCGGCTGAGGC+AGG + chr4_4:17193331-17193350 Msa0672330:intron 60.0%
CTCAGTAGCAGGGTCAGCAG+TGG - chr4_4:17193689-17193708 None:intergenic 60.0%
CACTGCTGACCCTGCTACTG+AGG + chr4_4:17193687-17193706 Msa0672330:CDS 60.0%
! AGTGGTGGCAGCGGTAACGG+CGG - chr4_4:17190793-17190812 None:intergenic 65.0%
GGAGAAGCCGGCAGAAGTGG+TGG + chr4_4:17190851-17190870 Msa0672330:CDS 65.0%
CACCCTCCTGTCACTCCGGT+CGG - chr4_4:17192082-17192101 None:intergenic 65.0%
GGCGGAGAAGCCGGCAGAAG+TGG + chr4_4:17190848-17190867 Msa0672330:CDS 70.0%
GCTTTGACTGGGGCGGGTGG+AGG - chr4_4:17191062-17191081 None:intergenic 70.0%
GGTGCTTTGACTGGGGCGGG+TGG - chr4_4:17191065-17191084 None:intergenic 70.0%
TGACCGCCGACCGGAGTGAC+AGG + chr4_4:17192073-17192092 Msa0672330:intron 70.0%
CCTCCTGTCACTCCGGTCGG+CGG - chr4_4:17192079-17192098 None:intergenic 70.0%
CGCCGACCGGAGTGACAGGA+GGG + chr4_4:17192077-17192096 Msa0672330:intron 70.0%
! GGCAGCGGTAACGGCGGCAG+CGG - chr4_4:17190787-17190806 None:intergenic 75.0%
GACTGGGGCGGGTGGAGGAG+CGG - chr4_4:17191057-17191076 None:intergenic 75.0%
CCGCCGACCGGAGTGACAGG+AGG + chr4_4:17192076-17192095 Msa0672330:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 17190508 17194544 17190508 ID=Msa0672330;Name=Msa0672330
chr4_4 mRNA 17190508 17194544 17190508 ID=Msa0672330-mRNA-1;Parent=Msa0672330;Name=Msa0672330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|0.8|0.66|1|1|1|6|330|603
chr4_4 exon 17190508 17191649 17190508 ID=Msa0672330-mRNA-1:exon:4992;Parent=Msa0672330-mRNA-1
chr4_4 exon 17192343 17192594 17192343 ID=Msa0672330-mRNA-1:exon:4993;Parent=Msa0672330-mRNA-1
chr4_4 exon 17192743 17192817 17192743 ID=Msa0672330-mRNA-1:exon:4994;Parent=Msa0672330-mRNA-1
chr4_4 exon 17192944 17193068 17192944 ID=Msa0672330-mRNA-1:exon:4995;Parent=Msa0672330-mRNA-1
chr4_4 exon 17193618 17193759 17193618 ID=Msa0672330-mRNA-1:exon:4996;Parent=Msa0672330-mRNA-1
chr4_4 exon 17193960 17194544 17193960 ID=Msa0672330-mRNA-1:exon:4997;Parent=Msa0672330-mRNA-1
chr4_4 five_prime_UTR 17190508 17190686 17190508 ID=Msa0672330-mRNA-1:five_prime_utr;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17190687 17191649 17190687 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17192343 17192594 17192343 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17192743 17192817 17192743 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17192944 17193068 17192944 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17193618 17193759 17193618 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 CDS 17193960 17194214 17193960 ID=Msa0672330-mRNA-1:cds;Parent=Msa0672330-mRNA-1
chr4_4 three_prime_UTR 17194215 17194544 17194215 ID=Msa0672330-mRNA-1:three_prime_utr;Parent=Msa0672330-mRNA-1
Gene Sequence

>Msa0672330

ATGGCTGCTGAACCCCAAAAACCTGCTGAAGAAGTGGCCACAACAAGCTCTGAAACTGTTGTTGAGAAAGAACAACAGGCTGATGGAGTTGTAGCTGCCGCTGCCGCCGTTACCGCTGCCACCACTGATAAGGAAGCTGTTGCTGATCCTGTTGCTGATGAGGCGGAGAAGCCGGCAGAAGTGGTGGCTGATGTGGAGAAAGAAAAGGTGGCAGATGAAGCTGTTGTTGTTGATGAAAGCAAGGTTTCTCAATCGGTTTCTTTTAAGGAAGAAACTAACGTGGTTTCTGAACTTCCAGAAGTTCAGAAAAAAGCACTTGATGAACTTAAACAGCTTATTCAAGAAGCGCTTAACAAACATGAATTCTCCGCTCCTCCACCCGCCCCAGTCAAAGCACCTGAACCTGAAGTAGCTGCAAAAGAAGAGAAAAAACCTGAAGAAGATGACAAGAAAACCGAAGAAAAGAAAGAAGAAGTGGCAGAAGAGAAGAAAGATGAAGCAGTAGTTGAAGAGAAAAAGGTTGAAGAAGAAAAAGGTTCTACCTCCGAGGAACCTAAAGCTGCTGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGAAGAAAGTGGATGAAACTGTCGTAGAAGTTGTTGAGAAAATAGCTGCAAGTACCGAAGAAGACGGCGCAAAAACCGTTGAAGCTATTCAAGAAAGCATAGTATCTGTTCCAGTTACGGAAGGTGAACAACCCGTTGCGGAACCCGTTGCTGAAGTGGAGGTTACTCCTACTGTACCAGAGGAAGTTGAAATATGGGGAATTCCATTACTAGCTGATGAAAGGAGTGATGTGATTCTTCTCAAATTCTTGAGAGCTAGGGATTTTAAGGTGAAGGAGGCTTTCACTATGATCAAACAAACCGTGATTTGGCGAAAGGAATTCGGAGTCGAAGCACTTCTTCAAGAAGATCTTGGAACTGATTGGGACAAAGTTGTTTTCACTGATGGTACCGACAAGGAAGGTCACCCTGTTTATTACAACGTCTTTGGTGAGTTTGAGGATAAGGATTTGTATCAAAAAACTTTCTCTGATGATGAGAAGAGAACCAAGTTCATCCGTTGGTGGATTCAGTCTTTGGAGAAAAGTGTTAGGAAACTCGACTTTGCTCCATCTGGCATCTCTACTCTTAAAGAGCTTAGACAATCTATTAAGCAGACTCTTCAGTTGCTTCAGGATAACTATCCTGAATTTGTTGCCAAACAGATTTTCATCAATGTTCCTTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCCTGACACAAAGGACTAAGAGCAAATTTGTATTTGCTGGTTCCTCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCTGAGCAAGTGCCGGTTAAATATGGAGGACTGAGCAGAGAGGGTGAACAGCAATTCACCACTGCTGACCCTGCTACTGAGGTTACTATCAAACCAACAACAAAACATGCTGTTGAGTTCCCAGTGTCTGAGAAAAGTACTTTGGTTTGGGAAGTAAGAGTTGTGGATTGGAATGTGAGCTATGGAGCAGAATTTGTGCCTAGTGCTGAAGATGGATACACTGTGATAATCCAAAAGAACAGGAAAATTGCTGCAGCTGATGAAACAGTAATTAGCAACACCTTCAAAGTCGGCGAACCTGGAAAGGTTATACTCACCATTGATAACCAAACATCCAAGAAAAAGAAGCTGCTTTACAGGTCCAAGACCATACCCATCTCTGAGTAA
Protein sequence

>Msa0672330

MAAEPQKPAEEVATTSSETVVEKEQQADGVVAAAAAVTAATTDKEAVADPVADEAEKPAEVVADVEKEKVADEAVVVDESKVSQSVSFKEETNVVSELPEVQKKALDELKQLIQEALNKHEFSAPPPAPVKAPEPEVAAKEEKKPEEDDKKTEEKKEEVAEEKKDEAVVEEKKVEEEKGSTSEEPKAAEKKVEETVVEPEKEEKKVEETVVEPEKEKKVDETVVEVVEKIAASTEEDGAKTVEAIQESIVSVPVTEGEQPVAEPVAEVEVTPTVPEEVEIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKQTVIWRKEFGVEALLQEDLGTDWDKVVFTDGTDKEGHPVYYNVFGEFEDKDLYQKTFSDDEKRTKFIRWWIQSLEKSVRKLDFAPSGISTLKELRQSIKQTLQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFVFAGSSKSAETLFKYIAPEQVPVKYGGLSREGEQQFTTADPATEVTIKPTTKHAVEFPVSEKSTLVWEVRVVDWNVSYGAEFVPSAEDGYTVIIQKNRKIAAADETVISNTFKVGEPGKVILTIDNQTSKKKKLLYRSKTIPISE*