Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672530 | XP_024636352.2 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672530 | sp|Q9LXN3|FACR4_ARATH | 47.287 | 387 | 167 | 5 | 1 | 354 | 110 | 492 | 4.27e-124 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672530 | G7JJM2 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672530 | Msa0680760 | 0.999392 | 4.262803e-308 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672530 | MtrunA17_Chr4g0026711 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Msa0672530 | MtrunA17_Chr4g0026771 | 66.408 | 387 | 96 | 3 | 1 | 354 | 107 | 492 | 0.0 | 524 |
| Msa0672530 | MtrunA17_Chr5g0419501 | 66.436 | 289 | 41 | 4 | 1 | 288 | 110 | 343 | 1.23e-123 | 359 |
| Msa0672530 | MtrunA17_Chr6g0465391 | 49.719 | 356 | 172 | 4 | 1 | 354 | 110 | 460 | 3.01e-121 | 357 |
| Msa0672530 | MtrunA17_Chr4g0026691 | 47.258 | 383 | 166 | 4 | 4 | 354 | 113 | 491 | 1.01e-120 | 357 |
| Msa0672530 | MtrunA17_Chr2g0321181 | 45.692 | 383 | 172 | 5 | 4 | 354 | 113 | 491 | 6.81e-117 | 347 |
| Msa0672530 | MtrunA17_Chr4g0026701 | 44.301 | 386 | 179 | 4 | 1 | 354 | 111 | 492 | 6.87e-116 | 345 |
| Msa0672530 | MtrunA17_Chr2g0321201 | 44.648 | 383 | 175 | 5 | 4 | 354 | 115 | 492 | 2.29e-115 | 343 |
| Msa0672530 | MtrunA17_Chr1g0176054 | 34.264 | 394 | 207 | 8 | 3 | 354 | 225 | 608 | 1.22e-77 | 249 |
| Msa0672530 | MtrunA17_Chr5g0431251 | 78.906 | 128 | 27 | 0 | 77 | 204 | 3 | 130 | 2.57e-70 | 216 |
| Msa0672530 | MtrunA17_Chr4g0026911 | 58.378 | 185 | 43 | 3 | 204 | 354 | 3 | 187 | 4.28e-69 | 214 |
| Msa0672530 | MtrunA17_Chr5g0431281 | 55.978 | 184 | 47 | 2 | 204 | 354 | 28 | 210 | 1.05e-61 | 196 |
| Msa0672530 | MtrunA17_Chr4g0026891 | 67.480 | 123 | 38 | 2 | 1 | 122 | 107 | 228 | 8.77e-51 | 171 |
| Msa0672530 | MtrunA17_Chr5g0419491 | 82.927 | 82 | 14 | 0 | 273 | 354 | 19 | 100 | 1.51e-43 | 145 |
| Msa0672530 | MtrunA17_Chr6g0465381 | 46.939 | 147 | 78 | 0 | 138 | 284 | 1 | 147 | 8.28e-33 | 120 |
| Msa0672530 | MtrunA17_Chr4g0026901 | 86.207 | 58 | 8 | 0 | 122 | 179 | 16 | 73 | 9.42e-32 | 114 |
| Msa0672530 | MtrunA17_Chr5g0431271 | 73.134 | 67 | 18 | 0 | 138 | 204 | 1 | 67 | 3.98e-30 | 112 |
| Msa0672530 | MtrunA17_Chr5g0431261 | 68.657 | 67 | 21 | 0 | 204 | 270 | 3 | 69 | 7.24e-26 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672530 | AT3G44540.1 | 47.287 | 387 | 167 | 5 | 1 | 354 | 110 | 492 | 4.34e-125 | 369 |
| Msa0672530 | AT5G22500.1 | 45.478 | 387 | 172 | 6 | 1 | 354 | 110 | 490 | 1.83e-121 | 359 |
| Msa0672530 | AT3G44550.2 | 45.501 | 389 | 174 | 5 | 1 | 354 | 1 | 386 | 2.87e-115 | 340 |
| Msa0672530 | AT3G44550.1 | 45.501 | 389 | 174 | 5 | 1 | 354 | 110 | 495 | 1.48e-114 | 342 |
| Msa0672530 | AT4G33790.2 | 42.597 | 385 | 184 | 7 | 1 | 353 | 1 | 380 | 3.19e-113 | 334 |
| Msa0672530 | AT4G33790.1 | 42.708 | 384 | 183 | 7 | 1 | 352 | 114 | 492 | 5.70e-112 | 335 |
| Msa0672530 | AT3G44560.1 | 46.272 | 389 | 171 | 6 | 1 | 354 | 110 | 495 | 5.20e-109 | 328 |
| Msa0672530 | AT5G22420.4 | 42.588 | 371 | 178 | 6 | 1 | 341 | 1 | 366 | 7.74e-103 | 308 |
| Msa0672530 | AT5G22500.2 | 49.097 | 277 | 135 | 3 | 1 | 277 | 110 | 380 | 1.39e-97 | 295 |
| Msa0672530 | AT5G22420.1 | 41.096 | 365 | 180 | 6 | 7 | 341 | 43 | 402 | 3.65e-95 | 289 |
| Msa0672530 | AT5G22420.3 | 41.926 | 353 | 170 | 6 | 19 | 341 | 3 | 350 | 4.98e-94 | 285 |
| Msa0672530 | AT5G22420.6 | 41.926 | 353 | 170 | 6 | 19 | 341 | 3 | 350 | 4.98e-94 | 285 |
| Msa0672530 | AT3G44560.3 | 46.588 | 337 | 145 | 5 | 1 | 305 | 110 | 443 | 6.41e-92 | 282 |
| Msa0672530 | AT3G44560.2 | 50.741 | 270 | 130 | 2 | 1 | 270 | 110 | 376 | 1.52e-86 | 267 |
| Msa0672530 | AT3G11980.1 | 37.500 | 400 | 187 | 12 | 3 | 354 | 229 | 613 | 6.99e-78 | 251 |
| Msa0672530 | AT3G44540.2 | 55.825 | 206 | 87 | 3 | 1 | 206 | 110 | 311 | 8.67e-78 | 241 |
| Msa0672530 | AT3G44540.3 | 55.825 | 206 | 87 | 3 | 1 | 206 | 110 | 311 | 8.67e-78 | 241 |
| Msa0672530 | AT5G22420.5 | 40.566 | 318 | 154 | 6 | 54 | 341 | 3 | 315 | 3.18e-77 | 240 |
| Msa0672530 | AT5G22420.2 | 40.000 | 295 | 146 | 3 | 77 | 341 | 3 | 296 | 2.43e-73 | 230 |
| Msa0672530 | AT5G22420.7 | 40.000 | 295 | 146 | 3 | 77 | 341 | 3 | 296 | 2.43e-73 | 230 |
| Msa0672530 | AT3G56700.2 | 34.501 | 371 | 207 | 8 | 3 | 350 | 182 | 539 | 1.85e-65 | 216 |
| Msa0672530 | AT3G56700.1 | 32.345 | 371 | 194 | 9 | 3 | 350 | 182 | 518 | 2.15e-54 | 187 |
Find 92 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGGAATTTCCAGCCATTT+TGG | 0.203730 | 4_4:-17609366 | None:intergenic |
| TTGACCCGATTAGCATTAAT+TGG | 0.205325 | 4_4:+17609267 | Msa0672530:CDS |
| TAAAATAATAAGATCTAAAT+AGG | 0.206217 | 4_4:-17609384 | None:intergenic |
| TAATCACCTTTCATTAAAAT+TGG | 0.227697 | 4_4:-17604669 | None:intergenic |
| ATGTTTCTATGATTCATATT+TGG | 0.239477 | 4_4:-17609450 | None:intergenic |
| AGATGCTGCAGTTGAAAATT+TGG | 0.266709 | 4_4:+17604574 | Msa0672530:five_prime_UTR |
| ATGATTCATATTTGGATGAT+AGG | 0.274646 | 4_4:-17609442 | None:intergenic |
| AAGTATGCGTTGAAAGATTA+TGG | 0.277868 | 4_4:+17606399 | Msa0672530:CDS |
| ATACGAACACGGAAAATTTA+AGG | 0.283879 | 4_4:+17609201 | Msa0672530:CDS |
| CTGGGATTACCAAGAAAATA+TGG | 0.306717 | 4_4:-17607521 | None:intergenic |
| TTTGTCCAATTAATGCTAAT+CGG | 0.324881 | 4_4:-17609272 | None:intergenic |
| TTACATTGTATTGGTTGAAT+AGG | 0.326509 | 4_4:+17604460 | Msa0672530:five_prime_UTR |
| AAATTATATACTACCCAAAA+TGG | 0.329517 | 4_4:+17609352 | Msa0672530:three_prime_UTR |
| TCAACCAATACAATGTAATA+AGG | 0.330222 | 4_4:-17604455 | None:intergenic |
| TATGTAGATACCTGCAGATT+TGG | 0.336833 | 4_4:+17608089 | Msa0672530:intron |
| ATTCCCTTGGAGATGACTAT+TGG | 0.360745 | 4_4:-17608279 | None:intergenic |
| GTTTGGCCAACCATGCAAAT+TGG | 0.391139 | 4_4:-17606548 | None:intergenic |
| TTGGCTTCCCATCTTTGTTT+AGG | 0.410010 | 4_4:-17608260 | None:intergenic |
| TCTGTGTGTATGTCTAGTTT+TGG | 0.416556 | 4_4:-17606312 | None:intergenic |
| GATGCTGCAGTTGAAAATTT+GGG | 0.422707 | 4_4:+17604575 | Msa0672530:five_prime_UTR |
| TTTGTGAATACATATGTGTT+TGG | 0.427147 | 4_4:-17606565 | None:intergenic |
| CTTGTACTAGTTACCATTGT+GGG | 0.427754 | 4_4:-17606649 | None:intergenic |
| TCGAGTGCTAAGAGATAAGT+TGG | 0.436321 | 4_4:+17604502 | Msa0672530:five_prime_UTR |
| GATGCCTTATTACATTGTAT+TGG | 0.439437 | 4_4:+17604451 | Msa0672530:five_prime_UTR |
| AAGAAGGTTGTAGCAGTAGC+TGG | 0.441757 | 4_4:+17604551 | Msa0672530:five_prime_UTR |
| TAATTCTAGCTTATGTGTGC+GGG | 0.446461 | 4_4:+17606217 | Msa0672530:intron |
| ATGATGAATACGCACATTCC+TGG | 0.447431 | 4_4:+17609299 | Msa0672530:CDS |
| ACACACAGAAATGAATTTGC+TGG | 0.449134 | 4_4:+17606326 | Msa0672530:CDS |
| TTAGAGCCAATTTGCATGGT+TGG | 0.457139 | 4_4:+17606542 | Msa0672530:intron |
| ACTCCTTGCCTAAACAAAGA+TGG | 0.462744 | 4_4:+17608252 | Msa0672530:CDS |
| GACCTTATTGTCCATTCCGC+TGG | 0.463270 | 4_4:+17604641 | Msa0672530:CDS |
| TGATATGTGCCTATGGTAAA+GGG | 0.463507 | 4_4:+17607492 | Msa0672530:CDS |
| TTCCCATCTTTGTTTAGGCA+AGG | 0.468942 | 4_4:-17608255 | None:intergenic |
| TTGTCCAATTAATGCTAATC+GGG | 0.470692 | 4_4:-17609271 | None:intergenic |
| GATTGACGACCCATCTCAAA+TGG | 0.474980 | 4_4:-17606276 | None:intergenic |
| ATGATATGTGCCTATGGTAA+AGG | 0.478427 | 4_4:+17607491 | Msa0672530:CDS |
| TACGATATCTAAGATTGTCC+TGG | 0.480866 | 4_4:-17607540 | None:intergenic |
| TTATGTGTGCGGGGAGACTA+AGG | 0.481843 | 4_4:+17606227 | Msa0672530:CDS |
| CTGGTTGGATTGAAGGTCAA+AGG | 0.485153 | 4_4:+17606686 | Msa0672530:CDS |
| CCTTCAATCCAACCAGGAAA+AGG | 0.489377 | 4_4:-17606679 | None:intergenic |
| CAAGAGAAACCATTTGAGAT+GGG | 0.491438 | 4_4:+17606267 | Msa0672530:CDS |
| TCAAGAGAAACCATTTGAGA+TGG | 0.493054 | 4_4:+17606266 | Msa0672530:CDS |
| CTCCTTGCCTAAACAAAGAT+GGG | 0.493790 | 4_4:+17608253 | Msa0672530:CDS |
| TTCCAGCGGAATGGACAATA+AGG | 0.495466 | 4_4:-17604643 | None:intergenic |
| CTACAGATTTGACATCTCAA+TGG | 0.499005 | 4_4:+17604767 | Msa0672530:intron |
| TCAATGGGTGTTAATACAAT+GGG | 0.499396 | 4_4:+17604783 | Msa0672530:CDS |
| TATGTATTCACAAAAGCAAT+GGG | 0.505601 | 4_4:+17606574 | Msa0672530:CDS |
| CTCAATGGGTGTTAATACAA+TGG | 0.505733 | 4_4:+17604782 | Msa0672530:CDS |
| TACAGATTTGACATCTCAAT+GGG | 0.511926 | 4_4:+17604768 | Msa0672530:intron |
| TGGCAATTTCCCTTTACCAT+AGG | 0.514404 | 4_4:-17607501 | None:intergenic |
| AAATTTAAGGAGGGCAACAA+AGG | 0.516552 | 4_4:+17609214 | Msa0672530:CDS |
| TGAAAGATTATGGAATTGAA+AGG | 0.518057 | 4_4:+17606409 | Msa0672530:CDS |
| AATTGGTAGTTCCAGCGGAA+TGG | 0.521774 | 4_4:-17604652 | None:intergenic |
| TATATACTACCCAAAATGGC+TGG | 0.525327 | 4_4:+17609356 | Msa0672530:three_prime_UTR |
| GGCAACAAAGGGCTATAACA+TGG | 0.527677 | 4_4:+17609226 | Msa0672530:CDS |
| AAGGGCTATAACATGGGGAA+TGG | 0.528155 | 4_4:+17609233 | Msa0672530:CDS |
| GTGGGACGTATAATGATCAA+TGG | 0.529417 | 4_4:-17606631 | None:intergenic |
| GGTCCTTGTCCACATATCTA+CGG | 0.533518 | 4_4:+17604851 | Msa0672530:CDS |
| ATTGCATACTTGACGAGACC+AGG | 0.540387 | 4_4:-17609317 | None:intergenic |
| GTCCTTGTCCACATATCTAC+GGG | 0.546601 | 4_4:+17604852 | Msa0672530:CDS |
| AAAATTAGAGCCAATTTGCA+TGG | 0.547252 | 4_4:+17606538 | Msa0672530:intron |
| CTAAGAGATAAGTTGGGTGA+AGG | 0.557893 | 4_4:+17604509 | Msa0672530:five_prime_UTR |
| TTAATTCTAGCTTATGTGTG+CGG | 0.559971 | 4_4:+17606216 | Msa0672530:intron |
| TGGGTCGTCAATCTCTAGAA+AGG | 0.559997 | 4_4:+17606286 | Msa0672530:CDS |
| GATAGTATGATATGTGCCTA+TGG | 0.564664 | 4_4:+17607485 | Msa0672530:CDS |
| ACGATATCTAAGATTGTCCT+GGG | 0.568544 | 4_4:-17607539 | None:intergenic |
| GCAACAAAGGGCTATAACAT+GGG | 0.569586 | 4_4:+17609227 | Msa0672530:CDS |
| AATATTGATGGGAAATGTTG+TGG | 0.572567 | 4_4:-17608221 | None:intergenic |
| CTCTCGTCAGTCAGTCTGAG+TGG | 0.579405 | 4_4:+17609706 | Msa0672530:three_prime_UTR |
| AATTTAAGGAGGGCAACAAA+GGG | 0.581635 | 4_4:+17609215 | Msa0672530:CDS |
| CAATTGATGACCAAATCTGC+AGG | 0.583208 | 4_4:-17608099 | None:intergenic |
| GGTACTTACCCGTAGATATG+TGG | 0.583309 | 4_4:-17604860 | None:intergenic |
| ATTAAAATTGGTAGTTCCAG+CGG | 0.587769 | 4_4:-17604657 | None:intergenic |
| ATATGTATTCACAAAAGCAA+TGG | 0.587895 | 4_4:+17606573 | Msa0672530:CDS |
| CTTTGACCTTCAATCCAACC+AGG | 0.590282 | 4_4:-17606685 | None:intergenic |
| TCTCGTCAGTCAGTCTGAGT+GGG | 0.594792 | 4_4:+17609707 | Msa0672530:three_prime_UTR |
| GCTTGTACTAGTTACCATTG+TGG | 0.598615 | 4_4:-17606650 | None:intergenic |
| CGAGTGCTAAGAGATAAGTT+GGG | 0.624826 | 4_4:+17604503 | Msa0672530:five_prime_UTR |
| AATGGTAACTAGTACAAGCA+AGG | 0.635270 | 4_4:+17606654 | Msa0672530:CDS |
| GAAGCCAATAGTCATCTCCA+AGG | 0.638787 | 4_4:+17608275 | Msa0672530:CDS |
| CGAACACGGAAAATTTAAGG+AGG | 0.646321 | 4_4:+17609204 | Msa0672530:CDS |
| TAACTACAAGAAAATACGAA+TGG | 0.647002 | 4_4:+17609017 | Msa0672530:CDS |
| CAACAAAGGGCTATAACATG+GGG | 0.652318 | 4_4:+17609228 | Msa0672530:CDS |
| TTCTTAATGAAGAAGAAACA+TGG | 0.655254 | 4_4:-17608176 | None:intergenic |
| AATTCTAGCTTATGTGTGCG+GGG | 0.658485 | 4_4:+17606218 | Msa0672530:intron |
| TAGCTTTGATGATACGAACA+CGG | 0.658725 | 4_4:+17609190 | Msa0672530:intron |
| GATCATTATACGTCCCACAA+TGG | 0.659908 | 4_4:+17606636 | Msa0672530:CDS |
| GTGTGCGGGGAGACTAAGGA+AGG | 0.662909 | 4_4:+17606231 | Msa0672530:CDS |
| TGAATTACGAGCAATGAATG+TGG | 0.665726 | 4_4:+17606362 | Msa0672530:CDS |
| AAGCCAATAGTCATCTCCAA+GGG | 0.667568 | 4_4:+17608276 | Msa0672530:CDS |
| GAACACGGAAAATTTAAGGA+GGG | 0.691082 | 4_4:+17609205 | Msa0672530:CDS |
| TACCCGTAGATATGTGGACA+AGG | 0.695208 | 4_4:-17604854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAAAATTAATTTAACA+AGG | - | chr4_4:17604721-17604740 | None:intergenic | 10.0% |
| !!! | TATTATTATTATTATTTCTG+AGG | - | chr4_4:17604884-17604903 | None:intergenic | 10.0% |
| !!! | TATTTCTATATTATTTGTAT+CGG | - | chr4_4:17605067-17605086 | None:intergenic | 10.0% |
| !!! | GTTATAAATTATTTGTTTTA+AGG | - | chr4_4:17605212-17605231 | None:intergenic | 10.0% |
| !! | CAAAAAATTATTAAAAATAG+TGG | + | chr4_4:17605400-17605419 | Msa0672530:intron | 10.0% |
| !!! | TTTATGCTTATATTTAAAAT+TGG | + | chr4_4:17605783-17605802 | Msa0672530:intron | 10.0% |
| !!! | TCCAATTATATTTTTTTTTA+GGG | - | chr4_4:17606144-17606163 | None:intergenic | 10.0% |
| !! | TAAAAAAAAATATAATTGGA+GGG | + | chr4_4:17606144-17606163 | Msa0672530:intron | 10.0% |
| !! | GTAAAAAAAAAAAAAAAGTA+TGG | - | chr4_4:17606450-17606469 | None:intergenic | 10.0% |
| !! | ACTATATCAAAATTTAAATT+AGG | + | chr4_4:17607321-17607340 | Msa0672530:intron | 10.0% |
| !! | CTATATCAAAATTTAAATTA+GGG | + | chr4_4:17607322-17607341 | Msa0672530:intron | 10.0% |
| !! | TATATCAAAATTTAAATTAG+GGG | + | chr4_4:17607323-17607342 | Msa0672530:intron | 10.0% |
| !! | ATTAATCCTTTAATATAATT+TGG | + | chr4_4:17608926-17608945 | Msa0672530:intron | 10.0% |
| !!! | ATGAAAATATGAATTATTTT+TGG | + | chr4_4:17609164-17609183 | Msa0672530:intron | 10.0% |
| !! | TAAAATAATAAGATCTAAAT+AGG | - | chr4_4:17609387-17609406 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAGTATTCAAAA+TGG | + | chr4_4:17609400-17609419 | Msa0672530:three_prime_UTR | 10.0% |
| !!! | TAATTCTTTTATATCAAAGA+AGG | + | chr4_4:17604535-17604554 | Msa0672530:five_prime_UTR | 15.0% |
| !! | ATTTCTATATTATTTGTATC+GGG | - | chr4_4:17605066-17605085 | None:intergenic | 15.0% |
| !!! | TAATTTTTACTCTTTTTTGA+AGG | + | chr4_4:17605351-17605370 | Msa0672530:intron | 15.0% |
| !!! | ATAAGCAAAAATTAACATTT+TGG | - | chr4_4:17605670-17605689 | None:intergenic | 15.0% |
| !! | TAATTATACTTACTCTATTT+AGG | - | chr4_4:17605735-17605754 | None:intergenic | 15.0% |
| !! | AGTGAAATAAAAAAAATAAC+TGG | + | chr4_4:17605835-17605854 | Msa0672530:intron | 15.0% |
| !! | ACCCTAAAAAAAAATATAAT+TGG | + | chr4_4:17606140-17606159 | Msa0672530:intron | 15.0% |
| !!! | CTCCAATTATATTTTTTTTT+AGG | - | chr4_4:17606145-17606164 | None:intergenic | 15.0% |
| !! | CTAAAAAAAAATATAATTGG+AGG | + | chr4_4:17606143-17606162 | Msa0672530:intron | 15.0% |
| !! | ATAGCAATAAAATATTATCA+CGG | - | chr4_4:17606193-17606212 | None:intergenic | 15.0% |
| !!! | TAACATCTAATTTTTTATAG+AGG | - | chr4_4:17606877-17606896 | None:intergenic | 15.0% |
| !!! | TTATTTAAGAGTTTTAAACT+TGG | - | chr4_4:17606973-17606992 | None:intergenic | 15.0% |
| !! | AACTCTTAAATAATGTTATT+AGG | + | chr4_4:17606980-17606999 | Msa0672530:intron | 15.0% |
| !! | ACTCTTAAATAATGTTATTA+GGG | + | chr4_4:17606981-17607000 | Msa0672530:intron | 15.0% |
| !! | AATATATTAAAGATAGTATG+AGG | + | chr4_4:17607173-17607192 | Msa0672530:intron | 15.0% |
| !!! | TTGATAAAAAAAAAAGTATG+AGG | + | chr4_4:17607255-17607274 | Msa0672530:intron | 15.0% |
| !! | CTTTAATCCAAAATTTAAAT+AGG | - | chr4_4:17607723-17607742 | None:intergenic | 15.0% |
| !!! | GATATTTTCATAACAAATAA+TGG | - | chr4_4:17607794-17607813 | None:intergenic | 15.0% |
| !!! | CTCTAATTGTTTAAAATTTA+AGG | - | chr4_4:17607896-17607915 | None:intergenic | 15.0% |
| !! | AAACTACTATTGATATTTAA+AGG | - | chr4_4:17608397-17608416 | None:intergenic | 15.0% |
| !! | TATATGCCAAATTATATTAA+AGG | - | chr4_4:17608935-17608954 | None:intergenic | 15.0% |
| !! | TAACATCTAATAAATAGAAA+AGG | - | chr4_4:17609108-17609127 | None:intergenic | 15.0% |
| !!! | AATTCATATTTTCATGAATA+TGG | - | chr4_4:17609159-17609178 | None:intergenic | 15.0% |
| !! | ACAATTCATATTTGAATAAT+AGG | - | chr4_4:17609535-17609554 | None:intergenic | 15.0% |
| !! | AGATTTCATATTTAGATAAT+AGG | - | chr4_4:17609625-17609644 | None:intergenic | 15.0% |
| !! | TAATCACCTTTCATTAAAAT+TGG | - | chr4_4:17604672-17604691 | None:intergenic | 20.0% |
| !! | GAAAGGTGATTAAAAAATTA+AGG | + | chr4_4:17604680-17604699 | Msa0672530:intron | 20.0% |
| !! | ACATCATAAAATCTCTATTA+AGG | + | chr4_4:17605172-17605191 | Msa0672530:intron | 20.0% |
| !!! | TATCAATTTTTTATCACGAT+CGG | + | chr4_4:17605262-17605281 | Msa0672530:intron | 20.0% |
| !!! | GTTAATAAAGAACAAGTTTT+TGG | - | chr4_4:17605483-17605502 | None:intergenic | 20.0% |
| !! | CATTCATTAAATGATGTATA+TGG | - | chr4_4:17605644-17605663 | None:intergenic | 20.0% |
| !!! | ATGCTTATATTTAAAATTGG+AGG | + | chr4_4:17605786-17605805 | Msa0672530:intron | 20.0% |
| !!! | TGCTTATATTTAAAATTGGA+GGG | + | chr4_4:17605787-17605806 | Msa0672530:intron | 20.0% |
| !! | AGAGTAGTATAATTATTACT+TGG | - | chr4_4:17605971-17605990 | None:intergenic | 20.0% |
| !! | CAAATATAGTATAAATACCT+TGG | + | chr4_4:17606112-17606131 | Msa0672530:intron | 20.0% |
| !! | TAGCAATAAAATATTATCAC+GGG | - | chr4_4:17606192-17606211 | None:intergenic | 20.0% |
| !!! | TGACACAAAATATTATTTCT+TGG | + | chr4_4:17607289-17607308 | Msa0672530:intron | 20.0% |
| !!! | GACACAAAATATTATTTCTT+GGG | + | chr4_4:17607290-17607309 | Msa0672530:intron | 20.0% |
| !! | ATAGAATTAGCAACTAAAAT+AGG | - | chr4_4:17607412-17607431 | None:intergenic | 20.0% |
| !! | AAAGAGTGGTAAAAAAAAAA+AGG | - | chr4_4:17607612-17607631 | None:intergenic | 20.0% |
| !! | AAAGAAAAATGAACTATCAA+AGG | - | chr4_4:17607665-17607684 | None:intergenic | 20.0% |
| !!! | ATTGAGACCTATTTAAATTT+TGG | + | chr4_4:17607713-17607732 | Msa0672530:intron | 20.0% |
| !!! | AGTTTTCATGAAATATTGAT+GGG | - | chr4_4:17608235-17608254 | None:intergenic | 20.0% |
| !!! | ATAAAGCAATTTTCTACATT+CGG | + | chr4_4:17608461-17608480 | Msa0672530:intron | 20.0% |
| !!! | AAAAAAGTTCATTGGTAATT+TGG | - | chr4_4:17608704-17608723 | None:intergenic | 20.0% |
| !! | TAGTGTATTAAATAATATGC+TGG | - | chr4_4:17608737-17608756 | None:intergenic | 20.0% |
| !! | TATAATTTGGCATATATTCA+AGG | + | chr4_4:17608939-17608958 | Msa0672530:intron | 20.0% |
| !! | TATATTCAAGGTCTTAAATT+TGG | + | chr4_4:17608951-17608970 | Msa0672530:intron | 20.0% |
| !! | AAATTATATACTACCCAAAA+TGG | + | chr4_4:17609352-17609371 | Msa0672530:three_prime_UTR | 20.0% |
| !!! | ATGTTTCTATGATTCATATT+TGG | - | chr4_4:17609453-17609472 | None:intergenic | 20.0% |
| !! | TTTTGTGTGTCAAAATAACA+TGG | + | chr4_4:17604394-17604413 | Msa0672530:five_prime_UTR | 25.0% |
| ! | TCAACCAATACAATGTAATA+AGG | - | chr4_4:17604458-17604477 | None:intergenic | 25.0% |
| !!! | TTACATTGTATTGGTTGAAT+AGG | + | chr4_4:17604460-17604479 | Msa0672530:five_prime_UTR | 25.0% |
| !!! | GAACTACCAATTTTAATGAA+AGG | + | chr4_4:17604663-17604682 | Msa0672530:CDS | 25.0% |
| !!! | ACACTTTTTTGCAATGTTTA+AGG | - | chr4_4:17604820-17604839 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCACAAAATGA+AGG | + | chr4_4:17604830-17604849 | Msa0672530:CDS | 25.0% |
| !!! | ATCAATTTTTTATCACGATC+GGG | + | chr4_4:17605263-17605282 | Msa0672530:intron | 25.0% |
| !!! | ACTTGTATTTTTGAACTTGA+TGG | - | chr4_4:17605456-17605475 | None:intergenic | 25.0% |
| ! | TGCTTATAATTAATAGTGAC+CGG | + | chr4_4:17605683-17605702 | Msa0672530:intron | 25.0% |
| ! | TGTGTTTCAAAAAAAATGGA+GGG | + | chr4_4:17605812-17605831 | Msa0672530:intron | 25.0% |
| ! | GTTAGCATTCTCTTAAAAAA+AGG | + | chr4_4:17606040-17606059 | Msa0672530:intron | 25.0% |
| !! | ATATTTGATTTCCTTAACCA+GGG | - | chr4_4:17606099-17606118 | None:intergenic | 25.0% |
| !! | TATATTTGATTTCCTTAACC+AGG | - | chr4_4:17606100-17606119 | None:intergenic | 25.0% |
| ! | ATAAAATATTATCACGGGTT+GGG | - | chr4_4:17606187-17606206 | None:intergenic | 25.0% |
| ! | AATAAAATATTATCACGGGT+TGG | - | chr4_4:17606188-17606207 | None:intergenic | 25.0% |
| ! | TGAAAGATTATGGAATTGAA+AGG | + | chr4_4:17606409-17606428 | Msa0672530:CDS | 25.0% |
| ! | TTTGTGAATACATATGTGTT+TGG | - | chr4_4:17606568-17606587 | None:intergenic | 25.0% |
| ! | ATATGTATTCACAAAAGCAA+TGG | + | chr4_4:17606573-17606592 | Msa0672530:CDS | 25.0% |
| ! | TATGTATTCACAAAAGCAAT+GGG | + | chr4_4:17606574-17606593 | Msa0672530:CDS | 25.0% |
| ! | AAAAGAAAACATGAACATGA+CGG | - | chr4_4:17606782-17606801 | None:intergenic | 25.0% |
| !! | CTTTCTTAGATGTCTATTTT+TGG | + | chr4_4:17606932-17606951 | Msa0672530:intron | 25.0% |
| !! | AATAATGTTATTAGGGTACT+TGG | + | chr4_4:17606988-17607007 | Msa0672530:intron | 25.0% |
| ! | CATTTATTCATCTTAAGAGA+TGG | - | chr4_4:17607061-17607080 | None:intergenic | 25.0% |
| ! | CATCTCTTAAGATGAATAAA+TGG | + | chr4_4:17607059-17607078 | Msa0672530:intron | 25.0% |
| ! | ATGAATAAATGGAGAATTCA+AGG | + | chr4_4:17607070-17607089 | Msa0672530:intron | 25.0% |
| ! | AGCAATGAAATTAAAAACAC+AGG | - | chr4_4:17607236-17607255 | None:intergenic | 25.0% |
| ! | GTAACTACTAAAGATACTAA+AGG | - | chr4_4:17607643-17607662 | None:intergenic | 25.0% |
| !! | ATATGCACTAGTTATTTCAA+CGG | + | chr4_4:17608020-17608039 | Msa0672530:intron | 25.0% |
| !! | ACATGGTAGATGAAATTTTT+AGG | - | chr4_4:17608162-17608181 | None:intergenic | 25.0% |
| ! | TTCTTAATGAAGAAGAAACA+TGG | - | chr4_4:17608179-17608198 | None:intergenic | 25.0% |
| !! | GAGTTTTCATGAAATATTGA+TGG | - | chr4_4:17608236-17608255 | None:intergenic | 25.0% |
| !! | TAAAGCAATTTTCTACATTC+GGG | + | chr4_4:17608462-17608481 | Msa0672530:intron | 25.0% |
| ! | TTTCTCCGATTTCAAAATTT+GGG | - | chr4_4:17608544-17608563 | None:intergenic | 25.0% |
| !! | TTTTCTCCGATTTCAAAATT+TGG | - | chr4_4:17608545-17608564 | None:intergenic | 25.0% |
| ! | GCTGTAAAAAAAAAGTTCAT+TGG | - | chr4_4:17608712-17608731 | None:intergenic | 25.0% |
| !!! | TTCAACACATATTTTCTAGT+TGG | + | chr4_4:17608759-17608778 | Msa0672530:intron | 25.0% |
| ! | TGTATCTCACTAAATTTATG+TGG | + | chr4_4:17608794-17608813 | Msa0672530:intron | 25.0% |
| !!! | TCTCTAACACACATTTTAAT+TGG | - | chr4_4:17608855-17608874 | None:intergenic | 25.0% |
| ! | AGTTATCATCATAAACATCT+TGG | - | chr4_4:17609002-17609021 | None:intergenic | 25.0% |
| ! | TAACTACAAGAAAATACGAA+TGG | + | chr4_4:17609017-17609036 | Msa0672530:CDS | 25.0% |
| ! | TTTGTCCAATTAATGCTAAT+CGG | - | chr4_4:17609275-17609294 | None:intergenic | 25.0% |
| ! | ATGATTCATATTTGGATGAT+AGG | - | chr4_4:17609445-17609464 | None:intergenic | 25.0% |
| ! | GATGCCTTATTACATTGTAT+TGG | + | chr4_4:17604451-17604470 | Msa0672530:five_prime_UTR | 30.0% |
| ! | ATTAAAATTGGTAGTTCCAG+CGG | - | chr4_4:17604660-17604679 | None:intergenic | 30.0% |
| TACAGATTTGACATCTCAAT+GGG | + | chr4_4:17604768-17604787 | Msa0672530:intron | 30.0% | |
| TCAATGGGTGTTAATACAAT+GGG | + | chr4_4:17604783-17604802 | Msa0672530:CDS | 30.0% | |
| TTTATTGTCAAAGAGAGAGT+AGG | - | chr4_4:17604981-17605000 | None:intergenic | 30.0% | |
| ! | TTTTCTATAATAGTGACCAG+AGG | - | chr4_4:17605568-17605587 | None:intergenic | 30.0% |
| TATAATTAATAGTGACCGGA+AGG | + | chr4_4:17605687-17605706 | Msa0672530:intron | 30.0% | |
| CTATTTAGGTCTTTCTTGTT+TGG | - | chr4_4:17605721-17605740 | None:intergenic | 30.0% | |
| GGAGTGTGTTTCAAAAAAAA+TGG | + | chr4_4:17605808-17605827 | Msa0672530:intron | 30.0% | |
| GTGTGTTTCAAAAAAAATGG+AGG | + | chr4_4:17605811-17605830 | Msa0672530:intron | 30.0% | |
| TATTTCTTAACCATTGCCAT+AGG | - | chr4_4:17605903-17605922 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAGGGTCTTTTCCA+AGG | - | chr4_4:17606132-17606151 | None:intergenic | 30.0% |
| CACACATAAGCTAGAATTAA+CGG | - | chr4_4:17606216-17606235 | None:intergenic | 30.0% | |
| !! | TTAATTCTAGCTTATGTGTG+CGG | + | chr4_4:17606216-17606235 | Msa0672530:intron | 30.0% |
| AAGTATGCGTTGAAAGATTA+TGG | + | chr4_4:17606399-17606418 | Msa0672530:CDS | 30.0% | |
| !!! | AATTGGCTCTAATTTTGCAT+TGG | - | chr4_4:17606534-17606553 | None:intergenic | 30.0% |
| AAAATTAGAGCCAATTTGCA+TGG | + | chr4_4:17606538-17606557 | Msa0672530:intron | 30.0% | |
| ! | GATTGAATATTTTCTCTGCT+TGG | + | chr4_4:17606749-17606768 | Msa0672530:intron | 30.0% |
| !!! | TTTTTTGCCAAATAATCTCG+TGG | + | chr4_4:17607027-17607046 | Msa0672530:intron | 30.0% |
| ! | TTTTTGCCAAATAATCTCGT+GGG | + | chr4_4:17607028-17607047 | Msa0672530:intron | 30.0% |
| ! | GAGTTTGAATTCTTTTTACG+TGG | + | chr4_4:17607195-17607214 | Msa0672530:intron | 30.0% |
| TAAAGGTAAATACGAAAGAG+TGG | - | chr4_4:17607626-17607645 | None:intergenic | 30.0% | |
| AAATAGGTCTCAATTTACGT+GGG | - | chr4_4:17607707-17607726 | None:intergenic | 30.0% | |
| TAAATAGGTCTCAATTTACG+TGG | - | chr4_4:17607708-17607727 | None:intergenic | 30.0% | |
| AAGGATTGAGCTTCTTAAAT+TGG | - | chr4_4:17607877-17607896 | None:intergenic | 30.0% | |
| ! | TATGCACTAGTTATTTCAAC+GGG | + | chr4_4:17608021-17608040 | Msa0672530:intron | 30.0% |
| AATATTGATGGGAAATGTTG+TGG | - | chr4_4:17608224-17608243 | None:intergenic | 30.0% | |
| CGATTTCAAAATTTGGGTAT+GGG | - | chr4_4:17608538-17608557 | None:intergenic | 30.0% | |
| !!! | CCATACCCAAATTTTGAAAT+CGG | + | chr4_4:17608536-17608555 | Msa0672530:intron | 30.0% |
| ATACCCAAACTCAATGAAAA+CGG | + | chr4_4:17608574-17608593 | Msa0672530:intron | 30.0% | |
| AAAATATATCCACTCCTTCT+AGG | - | chr4_4:17608664-17608683 | None:intergenic | 30.0% | |
| ! | AGAAGGAGTGGATATATTTT+TGG | + | chr4_4:17608664-17608683 | Msa0672530:intron | 30.0% |
| ATCATCATAAACATCTTGGA+AGG | - | chr4_4:17608998-17609017 | None:intergenic | 30.0% | |
| ATACGAACACGGAAAATTTA+AGG | + | chr4_4:17609201-17609220 | Msa0672530:CDS | 30.0% | |
| TTGTCCAATTAATGCTAATC+GGG | - | chr4_4:17609274-17609293 | None:intergenic | 30.0% | |
| AGATGCTGCAGTTGAAAATT+TGG | + | chr4_4:17604574-17604593 | Msa0672530:five_prime_UTR | 35.0% | |
| GATGCTGCAGTTGAAAATTT+GGG | + | chr4_4:17604575-17604594 | Msa0672530:five_prime_UTR | 35.0% | |
| CATTGAGATGTCAAATCTGT+AGG | - | chr4_4:17604769-17604788 | None:intergenic | 35.0% | |
| CTACAGATTTGACATCTCAA+TGG | + | chr4_4:17604767-17604786 | Msa0672530:intron | 35.0% | |
| CTCAATGGGTGTTAATACAA+TGG | + | chr4_4:17604782-17604801 | Msa0672530:CDS | 35.0% | |
| AAAATGTTAACTAGTGCCCT+TGG | + | chr4_4:17606063-17606082 | Msa0672530:intron | 35.0% | |
| AAATGTTAACTAGTGCCCTT+GGG | + | chr4_4:17606064-17606083 | Msa0672530:intron | 35.0% | |
| !! | TAATTCTAGCTTATGTGTGC+GGG | + | chr4_4:17606217-17606236 | Msa0672530:intron | 35.0% |
| TCAAGAGAAACCATTTGAGA+TGG | + | chr4_4:17606266-17606285 | Msa0672530:CDS | 35.0% | |
| ! | CAAGAGAAACCATTTGAGAT+GGG | + | chr4_4:17606267-17606286 | Msa0672530:CDS | 35.0% |
| !! | TCTGTGTGTATGTCTAGTTT+TGG | - | chr4_4:17606315-17606334 | None:intergenic | 35.0% |
| ACACACAGAAATGAATTTGC+TGG | + | chr4_4:17606326-17606345 | Msa0672530:CDS | 35.0% | |
| TGAATTACGAGCAATGAATG+TGG | + | chr4_4:17606362-17606381 | Msa0672530:CDS | 35.0% | |
| CTTGTACTAGTTACCATTGT+GGG | - | chr4_4:17606652-17606671 | None:intergenic | 35.0% | |
| AATGGTAACTAGTACAAGCA+AGG | + | chr4_4:17606654-17606673 | Msa0672530:CDS | 35.0% | |
| GTGAATAAGAGTAGAGTTCA+AGG | + | chr4_4:17606828-17606847 | Msa0672530:intron | 35.0% | |
| TTTCTACCCACGAGATTATT+TGG | - | chr4_4:17607037-17607056 | None:intergenic | 35.0% | |
| ! | GAATTCTTTTTACGTGGTTC+AGG | + | chr4_4:17607201-17607220 | Msa0672530:intron | 35.0% |
| GATAGTATGATATGTGCCTA+TGG | + | chr4_4:17607485-17607504 | Msa0672530:CDS | 35.0% | |
| ATGATATGTGCCTATGGTAA+AGG | + | chr4_4:17607491-17607510 | Msa0672530:CDS | 35.0% | |
| TGATATGTGCCTATGGTAAA+GGG | + | chr4_4:17607492-17607511 | Msa0672530:CDS | 35.0% | |
| ! | GGGAAATTGCCATATTTTCT+TGG | + | chr4_4:17607512-17607531 | Msa0672530:CDS | 35.0% |
| CTGGGATTACCAAGAAAATA+TGG | - | chr4_4:17607524-17607543 | None:intergenic | 35.0% | |
| !! | CATATTTTCTTGGTAATCCC+AGG | + | chr4_4:17607522-17607541 | Msa0672530:CDS | 35.0% |
| ! | ACGATATCTAAGATTGTCCT+GGG | - | chr4_4:17607542-17607561 | None:intergenic | 35.0% |
| ! | TACGATATCTAAGATTGTCC+TGG | - | chr4_4:17607543-17607562 | None:intergenic | 35.0% |
| TATGTAGATACCTGCAGATT+TGG | + | chr4_4:17608089-17608108 | Msa0672530:intron | 35.0% | |
| ! | TGGACATCAGAAATTTTGAG+AGG | - | chr4_4:17608204-17608223 | None:intergenic | 35.0% |
| ! | AAAAGCAGCCATACTTTTCA+AGG | - | chr4_4:17608307-17608326 | None:intergenic | 35.0% |
| TTCAAAATTTGGGTATGGGA+CGG | - | chr4_4:17608534-17608553 | None:intergenic | 35.0% | |
| CCGATTTCAAAATTTGGGTA+TGG | - | chr4_4:17608539-17608558 | None:intergenic | 35.0% | |
| TTGAGTTTGGGTATGAGTTT+GGG | - | chr4_4:17608568-17608587 | None:intergenic | 35.0% | |
| ATTGAGTTTGGGTATGAGTT+TGG | - | chr4_4:17608569-17608588 | None:intergenic | 35.0% | |
| TACCCAAACTCAATGAAAAC+GGG | + | chr4_4:17608575-17608594 | Msa0672530:intron | 35.0% | |
| CATAAACATCTTGGAAGGAA+TGG | - | chr4_4:17608993-17609012 | None:intergenic | 35.0% | |
| !! | ACTGCTTTGAAAAACACGTA+AGG | - | chr4_4:17609069-17609088 | None:intergenic | 35.0% |
| !! | TAGCTTTGATGATACGAACA+CGG | + | chr4_4:17609190-17609209 | Msa0672530:intron | 35.0% |
| GAACACGGAAAATTTAAGGA+GGG | + | chr4_4:17609205-17609224 | Msa0672530:CDS | 35.0% | |
| AAATTTAAGGAGGGCAACAA+AGG | + | chr4_4:17609214-17609233 | Msa0672530:CDS | 35.0% | |
| AATTTAAGGAGGGCAACAAA+GGG | + | chr4_4:17609215-17609234 | Msa0672530:CDS | 35.0% | |
| TTGACCCGATTAGCATTAAT+TGG | + | chr4_4:17609267-17609286 | Msa0672530:CDS | 35.0% | |
| TATATACTACCCAAAATGGC+TGG | + | chr4_4:17609356-17609375 | Msa0672530:three_prime_UTR | 35.0% | |
| !! | TAGGAATTTCCAGCCATTTT+GGG | - | chr4_4:17609368-17609387 | None:intergenic | 35.0% |
| ! | ATAGGAATTTCCAGCCATTT+TGG | - | chr4_4:17609369-17609388 | None:intergenic | 35.0% |
| TCGAGTGCTAAGAGATAAGT+TGG | + | chr4_4:17604502-17604521 | Msa0672530:five_prime_UTR | 40.0% | |
| CGAGTGCTAAGAGATAAGTT+GGG | + | chr4_4:17604503-17604522 | Msa0672530:five_prime_UTR | 40.0% | |
| ! | CTAAGAGATAAGTTGGGTGA+AGG | + | chr4_4:17604509-17604528 | Msa0672530:five_prime_UTR | 40.0% |
| TGTTTGGTAAGTACACCTTC+CGG | - | chr4_4:17605705-17605724 | None:intergenic | 40.0% | |
| TAGTTGTTTAACCATGCCCT+TGG | + | chr4_4:17606012-17606031 | Msa0672530:intron | 40.0% | |
| !! | AATTCTAGCTTATGTGTGCG+GGG | + | chr4_4:17606218-17606237 | Msa0672530:intron | 40.0% |
| TTAGAGCCAATTTGCATGGT+TGG | + | chr4_4:17606542-17606561 | Msa0672530:intron | 40.0% | |
| GTGGGACGTATAATGATCAA+TGG | - | chr4_4:17606634-17606653 | None:intergenic | 40.0% | |
| GATCATTATACGTCCCACAA+TGG | + | chr4_4:17606636-17606655 | Msa0672530:CDS | 40.0% | |
| GCTTGTACTAGTTACCATTG+TGG | - | chr4_4:17606653-17606672 | None:intergenic | 40.0% | |
| TCTACATAATACAACGTCCC+TGG | + | chr4_4:17607106-17607125 | Msa0672530:intron | 40.0% | |
| ATAGCTTAGCTTAGCTACCA+GGG | - | chr4_4:17607126-17607145 | None:intergenic | 40.0% | |
| TGGCAATTTCCCTTTACCAT+AGG | - | chr4_4:17607504-17607523 | None:intergenic | 40.0% | |
| !! | ATTTACGTGGGTGTTGAGTA+TGG | - | chr4_4:17607695-17607714 | None:intergenic | 40.0% |
| ! | CAATTGATGACCAAATCTGC+AGG | - | chr4_4:17608102-17608121 | None:intergenic | 40.0% |
| ACTCCTTGCCTAAACAAAGA+TGG | + | chr4_4:17608252-17608271 | Msa0672530:CDS | 40.0% | |
| CTCCTTGCCTAAACAAAGAT+GGG | + | chr4_4:17608253-17608272 | Msa0672530:CDS | 40.0% | |
| ! | TTCCCATCTTTGTTTAGGCA+AGG | - | chr4_4:17608258-17608277 | None:intergenic | 40.0% |
| ! | TTGGCTTCCCATCTTTGTTT+AGG | - | chr4_4:17608263-17608282 | None:intergenic | 40.0% |
| AAGCCAATAGTCATCTCCAA+GGG | + | chr4_4:17608276-17608295 | Msa0672530:CDS | 40.0% | |
| ATTCCCTTGGAGATGACTAT+TGG | - | chr4_4:17608282-17608301 | None:intergenic | 40.0% | |
| !! | ACTTTTCAAGGCAATTCCCT+TGG | - | chr4_4:17608295-17608314 | None:intergenic | 40.0% |
| GGGAATTGCCTTGAAAAGTA+TGG | + | chr4_4:17608296-17608315 | Msa0672530:intron | 40.0% | |
| ! | GCAATTTTCTACATTCGGGA+CGG | + | chr4_4:17608466-17608485 | Msa0672530:intron | 40.0% |
| ! | CAATTTTCTACATTCGGGAC+GGG | + | chr4_4:17608467-17608486 | Msa0672530:intron | 40.0% |
| TCAAAATTTGGGTATGGGAC+GGG | - | chr4_4:17608533-17608552 | None:intergenic | 40.0% | |
| ACCCAAACTCAATGAAAACG+GGG | + | chr4_4:17608576-17608595 | Msa0672530:intron | 40.0% | |
| ! | TCCCCGTTTTCATTGAGTTT+GGG | - | chr4_4:17608580-17608599 | None:intergenic | 40.0% |
| ! | TTCCCCGTTTTCATTGAGTT+TGG | - | chr4_4:17608581-17608600 | None:intergenic | 40.0% |
| CGAATCAAACCCAATTTGAC+GGG | - | chr4_4:17608606-17608625 | None:intergenic | 40.0% | |
| CCGAATCAAACCCAATTTGA+CGG | - | chr4_4:17608607-17608626 | None:intergenic | 40.0% | |
| CCGTCAAATTGGGTTTGATT+CGG | + | chr4_4:17608604-17608623 | Msa0672530:intron | 40.0% | |
| !! | CAAATTGGGTTTGATTCGGT+CGG | + | chr4_4:17608608-17608627 | Msa0672530:intron | 40.0% |
| !! | AAATTGGGTTTGATTCGGTC+GGG | + | chr4_4:17608609-17608628 | Msa0672530:intron | 40.0% |
| CGAACACGGAAAATTTAAGG+AGG | + | chr4_4:17609204-17609223 | Msa0672530:CDS | 40.0% | |
| GCAACAAAGGGCTATAACAT+GGG | + | chr4_4:17609227-17609246 | Msa0672530:CDS | 40.0% | |
| CAACAAAGGGCTATAACATG+GGG | + | chr4_4:17609228-17609247 | Msa0672530:CDS | 40.0% | |
| ATGATGAATACGCACATTCC+TGG | + | chr4_4:17609299-17609318 | Msa0672530:CDS | 40.0% | |
| AAGAAGGTTGTAGCAGTAGC+TGG | + | chr4_4:17604551-17604570 | Msa0672530:five_prime_UTR | 45.0% | |
| TTCCAGCGGAATGGACAATA+AGG | - | chr4_4:17604646-17604665 | None:intergenic | 45.0% | |
| ! | AATTGGTAGTTCCAGCGGAA+TGG | - | chr4_4:17604655-17604674 | None:intergenic | 45.0% |
| GGTCCTTGTCCACATATCTA+CGG | + | chr4_4:17604851-17604870 | Msa0672530:CDS | 45.0% | |
| GTCCTTGTCCACATATCTAC+GGG | + | chr4_4:17604852-17604871 | Msa0672530:CDS | 45.0% | |
| TACCCGTAGATATGTGGACA+AGG | - | chr4_4:17604857-17604876 | None:intergenic | 45.0% | |
| GGTACTTACCCGTAGATATG+TGG | - | chr4_4:17604863-17604882 | None:intergenic | 45.0% | |
| ACTCAATCAACTACAGCCTC+TGG | + | chr4_4:17605549-17605568 | Msa0672530:intron | 45.0% | |
| TCTTGCTAACCAGTGTCCTA+TGG | + | chr4_4:17605884-17605903 | Msa0672530:intron | 45.0% | |
| TAACCAGTGTCCTATGGCAA+TGG | + | chr4_4:17605890-17605909 | Msa0672530:intron | 45.0% | |
| TAACCATTGCCATAGGACAC+TGG | - | chr4_4:17605896-17605915 | None:intergenic | 45.0% | |
| GTTTAACCATGCCCTTGGAA+CGG | + | chr4_4:17606017-17606036 | Msa0672530:intron | 45.0% | |
| TTTAACCATGCCCTTGGAAC+GGG | + | chr4_4:17606018-17606037 | Msa0672530:intron | 45.0% | |
| AGAATGCTAACCCGTTCCAA+GGG | - | chr4_4:17606031-17606050 | None:intergenic | 45.0% | |
| GATTGACGACCCATCTCAAA+TGG | - | chr4_4:17606279-17606298 | None:intergenic | 45.0% | |
| ! | TGGGTCGTCAATCTCTAGAA+AGG | + | chr4_4:17606286-17606305 | Msa0672530:CDS | 45.0% |
| GTTTGGCCAACCATGCAAAT+TGG | - | chr4_4:17606551-17606570 | None:intergenic | 45.0% | |
| ! | ACAAGCAAGGATCCTTTTCC+TGG | + | chr4_4:17606667-17606686 | Msa0672530:CDS | 45.0% |
| CCTTCAATCCAACCAGGAAA+AGG | - | chr4_4:17606682-17606701 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGGTTGGATTGA+AGG | + | chr4_4:17606679-17606698 | Msa0672530:CDS | 45.0% |
| CTTTGACCTTCAATCCAACC+AGG | - | chr4_4:17606688-17606707 | None:intergenic | 45.0% | |
| CTGGTTGGATTGAAGGTCAA+AGG | + | chr4_4:17606686-17606705 | Msa0672530:CDS | 45.0% | |
| CATAGCTTAGCTTAGCTACC+AGG | - | chr4_4:17607127-17607146 | None:intergenic | 45.0% | |
| ! | TCTTTTTACGTGGTTCAGGC+AGG | + | chr4_4:17607205-17607224 | Msa0672530:intron | 45.0% |
| GAAGCCAATAGTCATCTCCA+AGG | + | chr4_4:17608275-17608294 | Msa0672530:CDS | 45.0% | |
| TCTAACAAACCTCAAGTGGC+AGG | - | chr4_4:17608356-17608375 | None:intergenic | 45.0% | |
| TCGGTCTAACAAACCTCAAG+TGG | - | chr4_4:17608360-17608379 | None:intergenic | 45.0% | |
| !! | GTTTTGTTGCCATGCCTAGA+AGG | + | chr4_4:17608647-17608666 | Msa0672530:intron | 45.0% |
| ATATCCACTCCTTCTAGGCA+TGG | - | chr4_4:17608659-17608678 | None:intergenic | 45.0% | |
| GGCAACAAAGGGCTATAACA+TGG | + | chr4_4:17609226-17609245 | Msa0672530:CDS | 45.0% | |
| AAGGGCTATAACATGGGGAA+TGG | + | chr4_4:17609233-17609252 | Msa0672530:CDS | 45.0% | |
| ATTGCATACTTGACGAGACC+AGG | - | chr4_4:17609320-17609339 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAAAAAATTGATA+TGG | + | chr4_4:17606804-17606823 | Msa0672530:intron | 5.0% |
| !!! | CATTTATAAATAATTTATTT+TGG | - | chr4_4:17606905-17606924 | None:intergenic | 5.0% |
| !!! | TAATTCTATTTTATATATAA+TGG | + | chr4_4:17607423-17607442 | Msa0672530:intron | 5.0% |
| GACCTTATTGTCCATTCCGC+TGG | + | chr4_4:17604641-17604660 | Msa0672530:CDS | 50.0% | |
| GAGAATGCTAACCCGTTCCA+AGG | - | chr4_4:17606032-17606051 | None:intergenic | 50.0% | |
| TTATGTGTGCGGGGAGACTA+AGG | + | chr4_4:17606227-17606246 | Msa0672530:CDS | 50.0% | |
| ! | GCAAGGATCCTTTTCCTGGT+TGG | + | chr4_4:17606671-17606690 | Msa0672530:CDS | 50.0% |
| CTCAAGTGGCAGGACATATC+GGG | - | chr4_4:17608346-17608365 | None:intergenic | 50.0% | |
| CCTCAAGTGGCAGGACATAT+CGG | - | chr4_4:17608347-17608366 | None:intergenic | 50.0% | |
| ! | TTCTACATTCGGGACGGGTT+TGG | + | chr4_4:17608472-17608491 | Msa0672530:intron | 50.0% |
| ! | TCTACATTCGGGACGGGTTT+GGG | + | chr4_4:17608473-17608492 | Msa0672530:intron | 50.0% |
| TTTGGGTATGGGACGGGTAA+CGG | - | chr4_4:17608527-17608546 | None:intergenic | 50.0% | |
| ACGGGGAAAACCCGTCAAAT+TGG | + | chr4_4:17608593-17608612 | Msa0672530:intron | 50.0% | |
| CGGGGAAAACCCGTCAAATT+GGG | + | chr4_4:17608594-17608613 | Msa0672530:intron | 50.0% | |
| !! | TTGATTCGGTCGGGTAACCA+CGG | + | chr4_4:17608618-17608637 | Msa0672530:intron | 50.0% |
| GGCAACAAAACTCATACCCG+TGG | - | chr4_4:17608638-17608657 | None:intergenic | 50.0% | |
| TCTCGTCAGTCAGTCTGAGT+GGG | + | chr4_4:17609707-17609726 | Msa0672530:three_prime_UTR | 50.0% | |
| AACTAGTGCCCTTGGGACAC+TGG | + | chr4_4:17606071-17606090 | Msa0672530:intron | 55.0% | |
| ! | CCGATATGTCCTGCCACTTG+AGG | + | chr4_4:17608344-17608363 | Msa0672530:intron | 55.0% |
| ! | ATTCGGGACGGGTTTGGGTA+TGG | + | chr4_4:17608478-17608497 | Msa0672530:intron | 55.0% |
| ! | TTCGGGACGGGTTTGGGTAT+GGG | + | chr4_4:17608479-17608498 | Msa0672530:intron | 55.0% |
| !! | GGGACGGGTAACGGGTATAT+AGG | - | chr4_4:17608518-17608537 | None:intergenic | 55.0% |
| TTGGGTATGGGACGGGTAAC+GGG | - | chr4_4:17608526-17608545 | None:intergenic | 55.0% | |
| !! | TGATTCGGTCGGGTAACCAC+GGG | + | chr4_4:17608619-17608638 | Msa0672530:intron | 55.0% |
| GTTGCCATGCCTAGAAGGAG+TGG | + | chr4_4:17608652-17608671 | Msa0672530:intron | 55.0% | |
| CTCTCGTCAGTCAGTCTGAG+TGG | + | chr4_4:17609706-17609725 | Msa0672530:three_prime_UTR | 55.0% | |
| GCTAACCCGTTCCAAGGGCA+TGG | - | chr4_4:17606026-17606045 | None:intergenic | 60.0% | |
| GTGTGCGGGGAGACTAAGGA+AGG | + | chr4_4:17606231-17606250 | Msa0672530:CDS | 60.0% | |
| ! | GACGGGTTTGGGTATGGGTG+CGG | + | chr4_4:17608484-17608503 | Msa0672530:intron | 60.0% |
| ACGGGTTTGGGTATGGGTGC+GGG | + | chr4_4:17608485-17608504 | Msa0672530:intron | 60.0% | |
| TTTGGGTATGGGTGCGGGGT+GGG | + | chr4_4:17608490-17608509 | Msa0672530:intron | 60.0% | |
| GGACACTGGCGCCCTGGTTA+AGG | + | chr4_4:17606085-17606104 | Msa0672530:intron | 65.0% | |
| CGGGTTTGGGTATGGGTGCG+GGG | + | chr4_4:17608486-17608505 | Msa0672530:intron | 65.0% | |
| GTTTGGGTATGGGTGCGGGG+TGG | + | chr4_4:17608489-17608508 | Msa0672530:intron | 65.0% | |
| ! | CCAGGGCGCCAGTGTCCCAA+GGG | - | chr4_4:17606082-17606101 | None:intergenic | 70.0% |
| ! | ACCAGGGCGCCAGTGTCCCA+AGG | - | chr4_4:17606083-17606102 | None:intergenic | 70.0% |
| CCCTTGGGACACTGGCGCCC+TGG | + | chr4_4:17606079-17606098 | Msa0672530:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 17604393 | 17609737 | 17604393 | ID=Msa0672530;Name=Msa0672530 |
| chr4_4 | mRNA | 17604393 | 17609737 | 17604393 | ID=Msa0672530-mRNA-1;Parent=Msa0672530;Name=Msa0672530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=233|0.87|0.77|1|0.75|0.55|9|259|354 |
| chr4_4 | exon | 17604393 | 17604684 | 17604393 | ID=Msa0672530-mRNA-1:exon:5148;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17604773 | 17604873 | 17604773 | ID=Msa0672530-mRNA-1:exon:5149;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17606226 | 17606430 | 17606226 | ID=Msa0672530-mRNA-1:exon:5150;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17606546 | 17606707 | 17606546 | ID=Msa0672530-mRNA-1:exon:5151;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17607478 | 17607559 | 17607478 | ID=Msa0672530-mRNA-1:exon:5152;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17608096 | 17608312 | 17608096 | ID=Msa0672530-mRNA-1:exon:5153;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17609004 | 17609088 | 17609004 | ID=Msa0672530-mRNA-1:exon:5154;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17609193 | 17609509 | 17609193 | ID=Msa0672530-mRNA-1:exon:5155;Parent=Msa0672530-mRNA-1 |
| chr4_4 | exon | 17609642 | 17609737 | 17609642 | ID=Msa0672530-mRNA-1:exon:5156;Parent=Msa0672530-mRNA-1 |
| chr4_4 | five_prime_UTR | 17604393 | 17604625 | 17604393 | ID=Msa0672530-mRNA-1:five_prime_utr;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17604626 | 17604684 | 17604626 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17604773 | 17604873 | 17604773 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17606226 | 17606430 | 17606226 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17606546 | 17606707 | 17606546 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17607478 | 17607559 | 17607478 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17608096 | 17608312 | 17608096 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17609004 | 17609088 | 17609004 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | CDS | 17609193 | 17609346 | 17609193 | ID=Msa0672530-mRNA-1:cds;Parent=Msa0672530-mRNA-1 |
| chr4_4 | three_prime_UTR | 17609347 | 17609509 | 17609347 | ID=Msa0672530-mRNA-1:three_prime_utr;Parent=Msa0672530-mRNA-1 |
| chr4_4 | three_prime_UTR | 17609642 | 17609737 | 17609642 | ID=Msa0672530-mRNA-1:three_prime_utr;Parent=Msa0672530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
