Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680760 | XP_024636352.2 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680760 | sp|Q9LXN3|FACR4_ARATH | 47.287 | 387 | 167 | 5 | 1 | 354 | 110 | 492 | 4.27e-124 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680760 | G7JJM2 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672520 | Msa0680760 | 0.801132 | 1.039963e-48 | -8.615850e-47 |
| Msa0672530 | Msa0680760 | 0.999392 | 4.262803e-308 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680760 | MtrunA17_Chr4g0026711 | 86.528 | 386 | 20 | 1 | 1 | 354 | 110 | 495 | 0.0 | 684 |
| Msa0680760 | MtrunA17_Chr4g0026771 | 66.408 | 387 | 96 | 3 | 1 | 354 | 107 | 492 | 0.0 | 524 |
| Msa0680760 | MtrunA17_Chr5g0419501 | 66.436 | 289 | 41 | 4 | 1 | 288 | 110 | 343 | 1.23e-123 | 359 |
| Msa0680760 | MtrunA17_Chr6g0465391 | 49.719 | 356 | 172 | 4 | 1 | 354 | 110 | 460 | 3.01e-121 | 357 |
| Msa0680760 | MtrunA17_Chr4g0026691 | 47.258 | 383 | 166 | 4 | 4 | 354 | 113 | 491 | 1.01e-120 | 357 |
| Msa0680760 | MtrunA17_Chr2g0321181 | 45.692 | 383 | 172 | 5 | 4 | 354 | 113 | 491 | 6.81e-117 | 347 |
| Msa0680760 | MtrunA17_Chr4g0026701 | 44.301 | 386 | 179 | 4 | 1 | 354 | 111 | 492 | 6.87e-116 | 345 |
| Msa0680760 | MtrunA17_Chr2g0321201 | 44.648 | 383 | 175 | 5 | 4 | 354 | 115 | 492 | 2.29e-115 | 343 |
| Msa0680760 | MtrunA17_Chr1g0176054 | 34.264 | 394 | 207 | 8 | 3 | 354 | 225 | 608 | 1.22e-77 | 249 |
| Msa0680760 | MtrunA17_Chr5g0431251 | 78.906 | 128 | 27 | 0 | 77 | 204 | 3 | 130 | 2.57e-70 | 216 |
| Msa0680760 | MtrunA17_Chr4g0026911 | 58.378 | 185 | 43 | 3 | 204 | 354 | 3 | 187 | 4.28e-69 | 214 |
| Msa0680760 | MtrunA17_Chr5g0431281 | 55.978 | 184 | 47 | 2 | 204 | 354 | 28 | 210 | 1.05e-61 | 196 |
| Msa0680760 | MtrunA17_Chr4g0026891 | 67.480 | 123 | 38 | 2 | 1 | 122 | 107 | 228 | 8.77e-51 | 171 |
| Msa0680760 | MtrunA17_Chr5g0419491 | 82.927 | 82 | 14 | 0 | 273 | 354 | 19 | 100 | 1.51e-43 | 145 |
| Msa0680760 | MtrunA17_Chr6g0465381 | 46.939 | 147 | 78 | 0 | 138 | 284 | 1 | 147 | 8.28e-33 | 120 |
| Msa0680760 | MtrunA17_Chr4g0026901 | 86.207 | 58 | 8 | 0 | 122 | 179 | 16 | 73 | 9.42e-32 | 114 |
| Msa0680760 | MtrunA17_Chr5g0431271 | 73.134 | 67 | 18 | 0 | 138 | 204 | 1 | 67 | 3.98e-30 | 112 |
| Msa0680760 | MtrunA17_Chr5g0431261 | 68.657 | 67 | 21 | 0 | 204 | 270 | 3 | 69 | 7.24e-26 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680760 | AT3G44540.1 | 47.287 | 387 | 167 | 5 | 1 | 354 | 110 | 492 | 4.34e-125 | 369 |
| Msa0680760 | AT5G22500.1 | 45.478 | 387 | 172 | 6 | 1 | 354 | 110 | 490 | 1.83e-121 | 359 |
| Msa0680760 | AT3G44550.2 | 45.501 | 389 | 174 | 5 | 1 | 354 | 1 | 386 | 2.87e-115 | 340 |
| Msa0680760 | AT3G44550.1 | 45.501 | 389 | 174 | 5 | 1 | 354 | 110 | 495 | 1.48e-114 | 342 |
| Msa0680760 | AT4G33790.2 | 42.597 | 385 | 184 | 7 | 1 | 353 | 1 | 380 | 3.19e-113 | 334 |
| Msa0680760 | AT4G33790.1 | 42.708 | 384 | 183 | 7 | 1 | 352 | 114 | 492 | 5.70e-112 | 335 |
| Msa0680760 | AT3G44560.1 | 46.272 | 389 | 171 | 6 | 1 | 354 | 110 | 495 | 5.20e-109 | 328 |
| Msa0680760 | AT5G22420.4 | 42.588 | 371 | 178 | 6 | 1 | 341 | 1 | 366 | 7.74e-103 | 308 |
| Msa0680760 | AT5G22500.2 | 49.097 | 277 | 135 | 3 | 1 | 277 | 110 | 380 | 1.39e-97 | 295 |
| Msa0680760 | AT5G22420.1 | 41.096 | 365 | 180 | 6 | 7 | 341 | 43 | 402 | 3.65e-95 | 289 |
| Msa0680760 | AT5G22420.3 | 41.926 | 353 | 170 | 6 | 19 | 341 | 3 | 350 | 4.98e-94 | 285 |
| Msa0680760 | AT5G22420.6 | 41.926 | 353 | 170 | 6 | 19 | 341 | 3 | 350 | 4.98e-94 | 285 |
| Msa0680760 | AT3G44560.3 | 46.588 | 337 | 145 | 5 | 1 | 305 | 110 | 443 | 6.41e-92 | 282 |
| Msa0680760 | AT3G44560.2 | 50.741 | 270 | 130 | 2 | 1 | 270 | 110 | 376 | 1.52e-86 | 267 |
| Msa0680760 | AT3G11980.1 | 37.500 | 400 | 187 | 12 | 3 | 354 | 229 | 613 | 6.99e-78 | 251 |
| Msa0680760 | AT3G44540.2 | 55.825 | 206 | 87 | 3 | 1 | 206 | 110 | 311 | 8.67e-78 | 241 |
| Msa0680760 | AT3G44540.3 | 55.825 | 206 | 87 | 3 | 1 | 206 | 110 | 311 | 8.67e-78 | 241 |
| Msa0680760 | AT5G22420.5 | 40.566 | 318 | 154 | 6 | 54 | 341 | 3 | 315 | 3.18e-77 | 240 |
| Msa0680760 | AT5G22420.2 | 40.000 | 295 | 146 | 3 | 77 | 341 | 3 | 296 | 2.43e-73 | 230 |
| Msa0680760 | AT5G22420.7 | 40.000 | 295 | 146 | 3 | 77 | 341 | 3 | 296 | 2.43e-73 | 230 |
| Msa0680760 | AT3G56700.2 | 34.501 | 371 | 207 | 8 | 3 | 350 | 182 | 539 | 1.85e-65 | 216 |
| Msa0680760 | AT3G56700.1 | 32.345 | 371 | 194 | 9 | 3 | 350 | 182 | 518 | 2.15e-54 | 187 |
Find 92 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGGAATTTCCAGCCATTT+TGG | 0.203730 | 4_4:-39992055 | None:intergenic |
| TTGACCCGATTAGCATTAAT+TGG | 0.205325 | 4_4:+39991956 | Msa0680760:CDS |
| TAAAATAATAAGATCTAAAT+AGG | 0.206217 | 4_4:-39992073 | None:intergenic |
| TAATCACCTTTCATTAAAAT+TGG | 0.227697 | 4_4:-39987350 | None:intergenic |
| ATGTTTCTATGATTCATATT+TGG | 0.239477 | 4_4:-39992139 | None:intergenic |
| AGATGCTGCAGTTGAAAATT+TGG | 0.266709 | 4_4:+39987255 | Msa0680760:five_prime_UTR |
| ATGATTCATATTTGGATGAT+AGG | 0.274646 | 4_4:-39992131 | None:intergenic |
| AAGTATGCGTTGAAAGATTA+TGG | 0.277868 | 4_4:+39989089 | Msa0680760:CDS |
| ATACGAACACGGAAAATTTA+AGG | 0.283879 | 4_4:+39991890 | Msa0680760:CDS |
| CTGGGATTACCAAGAAAATA+TGG | 0.306717 | 4_4:-39990210 | None:intergenic |
| TTTGTCCAATTAATGCTAAT+CGG | 0.324881 | 4_4:-39991961 | None:intergenic |
| TTACATTGTATTGGTTGAAT+AGG | 0.326509 | 4_4:+39987141 | Msa0680760:five_prime_UTR |
| AAATTATATACTACCCAAAA+TGG | 0.329517 | 4_4:+39992041 | Msa0680760:three_prime_UTR |
| TCAACCAATACAATGTAATA+AGG | 0.330222 | 4_4:-39987136 | None:intergenic |
| TATGTAGATACCTGCAGATT+TGG | 0.336833 | 4_4:+39990778 | Msa0680760:intron |
| ATTCCCTTGGAGATGACTAT+TGG | 0.360745 | 4_4:-39990968 | None:intergenic |
| GTTTGGCCAACCATGCAAAT+TGG | 0.391139 | 4_4:-39989237 | None:intergenic |
| TTGGCTTCCCATCTTTGTTT+AGG | 0.410010 | 4_4:-39990949 | None:intergenic |
| TCTGTGTGTATGTCTAGTTT+TGG | 0.416556 | 4_4:-39989002 | None:intergenic |
| GATGCTGCAGTTGAAAATTT+GGG | 0.422707 | 4_4:+39987256 | Msa0680760:five_prime_UTR |
| TTTGTGAATACATATGTGTT+TGG | 0.427147 | 4_4:-39989254 | None:intergenic |
| CTTGTACTAGTTACCATTGT+GGG | 0.427754 | 4_4:-39989338 | None:intergenic |
| TCGAGTGCTAAGAGATAAGT+TGG | 0.436321 | 4_4:+39987183 | Msa0680760:five_prime_UTR |
| GATGCCTTATTACATTGTAT+TGG | 0.439437 | 4_4:+39987132 | Msa0680760:five_prime_UTR |
| AAGAAGGTTGTAGCAGTAGC+TGG | 0.441757 | 4_4:+39987232 | Msa0680760:five_prime_UTR |
| TAATTCTAGCTTATGTGTGC+GGG | 0.446461 | 4_4:+39988907 | Msa0680760:intron |
| ATGATGAATACGCACATTCC+TGG | 0.447431 | 4_4:+39991988 | Msa0680760:CDS |
| ACACACAGAAATGAATTTGC+TGG | 0.449134 | 4_4:+39989016 | Msa0680760:CDS |
| TTAGAGCCAATTTGCATGGT+TGG | 0.457139 | 4_4:+39989231 | Msa0680760:intron |
| ACTCCTTGCCTAAACAAAGA+TGG | 0.462744 | 4_4:+39990941 | Msa0680760:CDS |
| GACCTTATTGTCCATTCCGC+TGG | 0.463270 | 4_4:+39987322 | Msa0680760:CDS |
| TGATATGTGCCTATGGTAAA+GGG | 0.463507 | 4_4:+39990181 | Msa0680760:CDS |
| TTCCCATCTTTGTTTAGGCA+AGG | 0.468942 | 4_4:-39990944 | None:intergenic |
| TTGTCCAATTAATGCTAATC+GGG | 0.470692 | 4_4:-39991960 | None:intergenic |
| GATTGACGACCCATCTCAAA+TGG | 0.474980 | 4_4:-39988966 | None:intergenic |
| ATGATATGTGCCTATGGTAA+AGG | 0.478427 | 4_4:+39990180 | Msa0680760:CDS |
| TACGATATCTAAGATTGTCC+TGG | 0.480866 | 4_4:-39990229 | None:intergenic |
| TTATGTGTGCGGGGAGACTA+AGG | 0.481843 | 4_4:+39988917 | Msa0680760:CDS |
| CTGGTTGGATTGAAGGTCAA+AGG | 0.485153 | 4_4:+39989375 | Msa0680760:CDS |
| CCTTCAATCCAACCAGGAAA+AGG | 0.489377 | 4_4:-39989368 | None:intergenic |
| CAAGAGAAACCATTTGAGAT+GGG | 0.491438 | 4_4:+39988957 | Msa0680760:CDS |
| TCAAGAGAAACCATTTGAGA+TGG | 0.493054 | 4_4:+39988956 | Msa0680760:CDS |
| CTCCTTGCCTAAACAAAGAT+GGG | 0.493790 | 4_4:+39990942 | Msa0680760:CDS |
| TTCCAGCGGAATGGACAATA+AGG | 0.495466 | 4_4:-39987324 | None:intergenic |
| CTACAGATTTGACATCTCAA+TGG | 0.499005 | 4_4:+39987448 | Msa0680760:intron |
| TCAATGGGTGTTAATACAAT+GGG | 0.499396 | 4_4:+39987464 | Msa0680760:CDS |
| TATGTATTCACAAAAGCAAT+GGG | 0.505601 | 4_4:+39989263 | Msa0680760:CDS |
| CTCAATGGGTGTTAATACAA+TGG | 0.505733 | 4_4:+39987463 | Msa0680760:CDS |
| TACAGATTTGACATCTCAAT+GGG | 0.511926 | 4_4:+39987449 | Msa0680760:intron |
| TGGCAATTTCCCTTTACCAT+AGG | 0.514404 | 4_4:-39990190 | None:intergenic |
| AAATTTAAGGAGGGCAACAA+AGG | 0.516552 | 4_4:+39991903 | Msa0680760:CDS |
| TGAAAGATTATGGAATTGAA+AGG | 0.518057 | 4_4:+39989099 | Msa0680760:CDS |
| AATTGGTAGTTCCAGCGGAA+TGG | 0.521774 | 4_4:-39987333 | None:intergenic |
| TATATACTACCCAAAATGGC+TGG | 0.525327 | 4_4:+39992045 | Msa0680760:three_prime_UTR |
| GGCAACAAAGGGCTATAACA+TGG | 0.527677 | 4_4:+39991915 | Msa0680760:CDS |
| AAGGGCTATAACATGGGGAA+TGG | 0.528155 | 4_4:+39991922 | Msa0680760:CDS |
| GTGGGACGTATAATGATCAA+TGG | 0.529417 | 4_4:-39989320 | None:intergenic |
| GGTCCTTGTCCACATATCTA+CGG | 0.533518 | 4_4:+39987532 | Msa0680760:CDS |
| ATTGCATACTTGACGAGACC+AGG | 0.540387 | 4_4:-39992006 | None:intergenic |
| GTCCTTGTCCACATATCTAC+GGG | 0.546601 | 4_4:+39987533 | Msa0680760:CDS |
| AAAATTAGAGCCAATTTGCA+TGG | 0.547252 | 4_4:+39989227 | Msa0680760:intron |
| CTAAGAGATAAGTTGGGTGA+AGG | 0.557893 | 4_4:+39987190 | Msa0680760:five_prime_UTR |
| TTAATTCTAGCTTATGTGTG+CGG | 0.559971 | 4_4:+39988906 | Msa0680760:intron |
| TGGGTCGTCAATCTCTAGAA+AGG | 0.559997 | 4_4:+39988976 | Msa0680760:CDS |
| GATAGTATGATATGTGCCTA+TGG | 0.564664 | 4_4:+39990174 | Msa0680760:CDS |
| ACGATATCTAAGATTGTCCT+GGG | 0.568544 | 4_4:-39990228 | None:intergenic |
| GCAACAAAGGGCTATAACAT+GGG | 0.569586 | 4_4:+39991916 | Msa0680760:CDS |
| AATATTGATGGGAAATGTTG+TGG | 0.572567 | 4_4:-39990910 | None:intergenic |
| CTCTCGTCAGTCAGTCTGAG+TGG | 0.579405 | 4_4:+39992395 | Msa0680760:three_prime_UTR |
| AATTTAAGGAGGGCAACAAA+GGG | 0.581635 | 4_4:+39991904 | Msa0680760:CDS |
| CAATTGATGACCAAATCTGC+AGG | 0.583208 | 4_4:-39990788 | None:intergenic |
| GGTACTTACCCGTAGATATG+TGG | 0.583309 | 4_4:-39987541 | None:intergenic |
| ATTAAAATTGGTAGTTCCAG+CGG | 0.587769 | 4_4:-39987338 | None:intergenic |
| ATATGTATTCACAAAAGCAA+TGG | 0.587895 | 4_4:+39989262 | Msa0680760:CDS |
| CTTTGACCTTCAATCCAACC+AGG | 0.590282 | 4_4:-39989374 | None:intergenic |
| TCTCGTCAGTCAGTCTGAGT+GGG | 0.594792 | 4_4:+39992396 | Msa0680760:three_prime_UTR |
| GCTTGTACTAGTTACCATTG+TGG | 0.598615 | 4_4:-39989339 | None:intergenic |
| CGAGTGCTAAGAGATAAGTT+GGG | 0.624826 | 4_4:+39987184 | Msa0680760:five_prime_UTR |
| AATGGTAACTAGTACAAGCA+AGG | 0.635270 | 4_4:+39989343 | Msa0680760:CDS |
| GAAGCCAATAGTCATCTCCA+AGG | 0.638787 | 4_4:+39990964 | Msa0680760:CDS |
| CGAACACGGAAAATTTAAGG+AGG | 0.646321 | 4_4:+39991893 | Msa0680760:CDS |
| TAACTACAAGAAAATACGAA+TGG | 0.647002 | 4_4:+39991706 | Msa0680760:CDS |
| CAACAAAGGGCTATAACATG+GGG | 0.652318 | 4_4:+39991917 | Msa0680760:CDS |
| TTCTTAATGAAGAAGAAACA+TGG | 0.655254 | 4_4:-39990865 | None:intergenic |
| AATTCTAGCTTATGTGTGCG+GGG | 0.658485 | 4_4:+39988908 | Msa0680760:intron |
| TAGCTTTGATGATACGAACA+CGG | 0.658725 | 4_4:+39991879 | Msa0680760:intron |
| GATCATTATACGTCCCACAA+TGG | 0.659908 | 4_4:+39989325 | Msa0680760:CDS |
| GTGTGCGGGGAGACTAAGGA+AGG | 0.662909 | 4_4:+39988921 | Msa0680760:CDS |
| TGAATTACGAGCAATGAATG+TGG | 0.665726 | 4_4:+39989052 | Msa0680760:CDS |
| AAGCCAATAGTCATCTCCAA+GGG | 0.667568 | 4_4:+39990965 | Msa0680760:CDS |
| GAACACGGAAAATTTAAGGA+GGG | 0.691082 | 4_4:+39991894 | Msa0680760:CDS |
| TACCCGTAGATATGTGGACA+AGG | 0.695208 | 4_4:-39987535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAAAATTAATTTAACA+AGG | - | chr4_4:39987402-39987421 | None:intergenic | 10.0% |
| !!! | TATTATTATTATTATTTCTG+AGG | - | chr4_4:39987565-39987584 | None:intergenic | 10.0% |
| !!! | TATTTCTATATTATTTGTAT+CGG | - | chr4_4:39987757-39987776 | None:intergenic | 10.0% |
| !!! | GTTATAAATTATTTGTTTTA+AGG | - | chr4_4:39987902-39987921 | None:intergenic | 10.0% |
| !! | CAAAAAATTATTAAAAATAG+TGG | + | chr4_4:39988090-39988109 | Msa0680760:intron | 10.0% |
| !!! | TTTATGCTTATATTTAAAAT+TGG | + | chr4_4:39988473-39988492 | Msa0680760:intron | 10.0% |
| !!! | TCCAATTATATTTTTTTTTA+GGG | - | chr4_4:39988834-39988853 | None:intergenic | 10.0% |
| !! | TAAAAAAAAATATAATTGGA+GGG | + | chr4_4:39988834-39988853 | Msa0680760:intron | 10.0% |
| !! | AGTAAAAAAAAAAAAAAGTA+TGG | - | chr4_4:39989140-39989159 | None:intergenic | 10.0% |
| !! | ACTATATCAAAATTTAAATT+AGG | + | chr4_4:39990010-39990029 | Msa0680760:intron | 10.0% |
| !! | CTATATCAAAATTTAAATTA+GGG | + | chr4_4:39990011-39990030 | Msa0680760:intron | 10.0% |
| !! | TATATCAAAATTTAAATTAG+GGG | + | chr4_4:39990012-39990031 | Msa0680760:intron | 10.0% |
| !! | ATTAATCCTTTAATATAATT+TGG | + | chr4_4:39991615-39991634 | Msa0680760:intron | 10.0% |
| !!! | ATGAAAATATGAATTATTTT+TGG | + | chr4_4:39991853-39991872 | Msa0680760:intron | 10.0% |
| !! | TAAAATAATAAGATCTAAAT+AGG | - | chr4_4:39992076-39992095 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAGTATTCAAAA+TGG | + | chr4_4:39992089-39992108 | Msa0680760:three_prime_UTR | 10.0% |
| !!! | TAATTCTTTTATATCAAAGA+AGG | + | chr4_4:39987216-39987235 | Msa0680760:five_prime_UTR | 15.0% |
| !! | ATTTCTATATTATTTGTATC+GGG | - | chr4_4:39987756-39987775 | None:intergenic | 15.0% |
| !!! | TAATTTTTACTCTTTTTTGA+AGG | + | chr4_4:39988041-39988060 | Msa0680760:intron | 15.0% |
| !!! | ATAAGCAAAAATTAACATTT+TGG | - | chr4_4:39988360-39988379 | None:intergenic | 15.0% |
| !! | TAATTATACTTACTCTATTT+AGG | - | chr4_4:39988425-39988444 | None:intergenic | 15.0% |
| !! | AGTGAAATAAAAAAAATAAC+TGG | + | chr4_4:39988525-39988544 | Msa0680760:intron | 15.0% |
| !! | ACCCTAAAAAAAAATATAAT+TGG | + | chr4_4:39988830-39988849 | Msa0680760:intron | 15.0% |
| !!! | CTCCAATTATATTTTTTTTT+AGG | - | chr4_4:39988835-39988854 | None:intergenic | 15.0% |
| !! | CTAAAAAAAAATATAATTGG+AGG | + | chr4_4:39988833-39988852 | Msa0680760:intron | 15.0% |
| !! | ATAGCAATAAAATATTATCA+CGG | - | chr4_4:39988883-39988902 | None:intergenic | 15.0% |
| !!! | TAACATCTAATTTTTTATAG+AGG | - | chr4_4:39989566-39989585 | None:intergenic | 15.0% |
| !!! | TTATTTAAGAGTTTTAAACT+TGG | - | chr4_4:39989662-39989681 | None:intergenic | 15.0% |
| !! | AACTCTTAAATAATGTTATT+AGG | + | chr4_4:39989669-39989688 | Msa0680760:intron | 15.0% |
| !! | ACTCTTAAATAATGTTATTA+GGG | + | chr4_4:39989670-39989689 | Msa0680760:intron | 15.0% |
| !! | AATATATTAAAGATAGTATG+AGG | + | chr4_4:39989862-39989881 | Msa0680760:intron | 15.0% |
| !!! | TTGATAAAAAAAAAAGTATG+AGG | + | chr4_4:39989944-39989963 | Msa0680760:intron | 15.0% |
| !! | CTTTAATCCAAAATTTAAAT+AGG | - | chr4_4:39990412-39990431 | None:intergenic | 15.0% |
| !!! | GATATTTTCATAACAAATAA+TGG | - | chr4_4:39990483-39990502 | None:intergenic | 15.0% |
| !!! | CTCTAATTGTTTAAAATTTA+AGG | - | chr4_4:39990585-39990604 | None:intergenic | 15.0% |
| !! | AAACTACTATTGATATTTAA+AGG | - | chr4_4:39991086-39991105 | None:intergenic | 15.0% |
| !! | TATATGCCAAATTATATTAA+AGG | - | chr4_4:39991624-39991643 | None:intergenic | 15.0% |
| !! | TAACATCTAATAAATAGAAA+AGG | - | chr4_4:39991797-39991816 | None:intergenic | 15.0% |
| !!! | AATTCATATTTTCATGAATA+TGG | - | chr4_4:39991848-39991867 | None:intergenic | 15.0% |
| !! | ACAATTCATATTTGAATAAT+AGG | - | chr4_4:39992224-39992243 | None:intergenic | 15.0% |
| !! | AGATTTCATATTTAGATAAT+AGG | - | chr4_4:39992314-39992333 | Msa0680770:intron | 15.0% |
| !! | TAATCACCTTTCATTAAAAT+TGG | - | chr4_4:39987353-39987372 | None:intergenic | 20.0% |
| !! | GAAAGGTGATTAAAAAATTA+AGG | + | chr4_4:39987361-39987380 | Msa0680760:intron | 20.0% |
| !! | ACATCATAAAATCTCTATTA+AGG | + | chr4_4:39987862-39987881 | Msa0680760:intron | 20.0% |
| !!! | TATCAATTTTTTATCACGAT+CGG | + | chr4_4:39987952-39987971 | Msa0680760:intron | 20.0% |
| !!! | GTTAATAAAGAACAAGTTTT+TGG | - | chr4_4:39988173-39988192 | None:intergenic | 20.0% |
| !! | CATTCATTAAATGATGTATA+TGG | - | chr4_4:39988334-39988353 | None:intergenic | 20.0% |
| !!! | ATGCTTATATTTAAAATTGG+AGG | + | chr4_4:39988476-39988495 | Msa0680760:intron | 20.0% |
| !!! | TGCTTATATTTAAAATTGGA+GGG | + | chr4_4:39988477-39988496 | Msa0680760:intron | 20.0% |
| !! | AGAGTAGTATAATTATTACT+TGG | - | chr4_4:39988661-39988680 | None:intergenic | 20.0% |
| !! | CAAATATAGTATAAATACCT+TGG | + | chr4_4:39988802-39988821 | Msa0680760:intron | 20.0% |
| !! | TAGCAATAAAATATTATCAC+GGG | - | chr4_4:39988882-39988901 | None:intergenic | 20.0% |
| !!! | TGACACAAAATATTATTTCT+TGG | + | chr4_4:39989978-39989997 | Msa0680760:intron | 20.0% |
| !!! | GACACAAAATATTATTTCTT+GGG | + | chr4_4:39989979-39989998 | Msa0680760:intron | 20.0% |
| !! | ATAGAATTAGCAACTAAAAT+AGG | - | chr4_4:39990101-39990120 | None:intergenic | 20.0% |
| !! | AAAGAGTGGTAAAAAAAAAA+AGG | - | chr4_4:39990301-39990320 | None:intergenic | 20.0% |
| !! | AAAGAAAAATGAACTATCAA+AGG | - | chr4_4:39990354-39990373 | None:intergenic | 20.0% |
| !!! | ATTGAGACCTATTTAAATTT+TGG | + | chr4_4:39990402-39990421 | Msa0680760:intron | 20.0% |
| !!! | AGTTTTCATGAAATATTGAT+GGG | - | chr4_4:39990924-39990943 | None:intergenic | 20.0% |
| !!! | ATAAAGCAATTTTCTACATT+CGG | + | chr4_4:39991150-39991169 | Msa0680760:intron | 20.0% |
| !!! | AAAAAAGTTCATTGGTAATT+TGG | - | chr4_4:39991393-39991412 | None:intergenic | 20.0% |
| !! | TAGTGTATTAAATAATATGC+TGG | - | chr4_4:39991426-39991445 | None:intergenic | 20.0% |
| !! | TATAATTTGGCATATATTCA+AGG | + | chr4_4:39991628-39991647 | Msa0680760:intron | 20.0% |
| !! | TATATTCAAGGTCTTAAATT+TGG | + | chr4_4:39991640-39991659 | Msa0680760:intron | 20.0% |
| !! | AAATTATATACTACCCAAAA+TGG | + | chr4_4:39992041-39992060 | Msa0680760:three_prime_UTR | 20.0% |
| !!! | ATGTTTCTATGATTCATATT+TGG | - | chr4_4:39992142-39992161 | None:intergenic | 20.0% |
| !! | TTTTGTGTGTCAAAATAACA+TGG | + | chr4_4:39987075-39987094 | Msa0680760:five_prime_UTR | 25.0% |
| ! | TCAACCAATACAATGTAATA+AGG | - | chr4_4:39987139-39987158 | None:intergenic | 25.0% |
| !!! | TTACATTGTATTGGTTGAAT+AGG | + | chr4_4:39987141-39987160 | Msa0680760:five_prime_UTR | 25.0% |
| !!! | GAACTACCAATTTTAATGAA+AGG | + | chr4_4:39987344-39987363 | Msa0680760:CDS | 25.0% |
| !!! | ACACTTTTTTGCAATGTTTA+AGG | - | chr4_4:39987501-39987520 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCACAAAATGA+AGG | + | chr4_4:39987511-39987530 | Msa0680760:CDS | 25.0% |
| !!! | ATCAATTTTTTATCACGATC+GGG | + | chr4_4:39987953-39987972 | Msa0680760:intron | 25.0% |
| !!! | ACTTGTATTTTTGAACTTGA+TGG | - | chr4_4:39988146-39988165 | None:intergenic | 25.0% |
| ! | TGCTTATAATTAATAGTGAC+CGG | + | chr4_4:39988373-39988392 | Msa0680760:intron | 25.0% |
| ! | TGTGTTTCAAAAAAAATGGA+GGG | + | chr4_4:39988502-39988521 | Msa0680760:intron | 25.0% |
| ! | GTTAGCATTCTCTTAAAAAA+AGG | + | chr4_4:39988730-39988749 | Msa0680760:intron | 25.0% |
| !! | ATATTTGATTTCCTTAACCA+GGG | - | chr4_4:39988789-39988808 | None:intergenic | 25.0% |
| !! | TATATTTGATTTCCTTAACC+AGG | - | chr4_4:39988790-39988809 | None:intergenic | 25.0% |
| ! | ATAAAATATTATCACGGGTT+GGG | - | chr4_4:39988877-39988896 | None:intergenic | 25.0% |
| ! | AATAAAATATTATCACGGGT+TGG | - | chr4_4:39988878-39988897 | None:intergenic | 25.0% |
| ! | TGAAAGATTATGGAATTGAA+AGG | + | chr4_4:39989099-39989118 | Msa0680760:CDS | 25.0% |
| ! | TTTGTGAATACATATGTGTT+TGG | - | chr4_4:39989257-39989276 | None:intergenic | 25.0% |
| ! | ATATGTATTCACAAAAGCAA+TGG | + | chr4_4:39989262-39989281 | Msa0680760:CDS | 25.0% |
| ! | TATGTATTCACAAAAGCAAT+GGG | + | chr4_4:39989263-39989282 | Msa0680760:CDS | 25.0% |
| ! | AAAAGAAAACATGAACATGA+CGG | - | chr4_4:39989471-39989490 | None:intergenic | 25.0% |
| !! | CTTTCTTAGATGTCTATTTT+TGG | + | chr4_4:39989621-39989640 | Msa0680760:intron | 25.0% |
| !! | AATAATGTTATTAGGGTACT+TGG | + | chr4_4:39989677-39989696 | Msa0680760:intron | 25.0% |
| ! | CATTTATTCATCTTAAGAGA+TGG | - | chr4_4:39989750-39989769 | None:intergenic | 25.0% |
| ! | CATCTCTTAAGATGAATAAA+TGG | + | chr4_4:39989748-39989767 | Msa0680760:intron | 25.0% |
| ! | ATGAATAAATGGAGAATTCA+AGG | + | chr4_4:39989759-39989778 | Msa0680760:intron | 25.0% |
| ! | AGCAATGAAATTAAAAACAC+AGG | - | chr4_4:39989925-39989944 | None:intergenic | 25.0% |
| ! | GTAACTACTAAAGATACTAA+AGG | - | chr4_4:39990332-39990351 | None:intergenic | 25.0% |
| !! | ATATGCACTAGTTATTTCAA+CGG | + | chr4_4:39990709-39990728 | Msa0680760:intron | 25.0% |
| !! | ACATGGTAGATGAAATTTTT+AGG | - | chr4_4:39990851-39990870 | None:intergenic | 25.0% |
| ! | TTCTTAATGAAGAAGAAACA+TGG | - | chr4_4:39990868-39990887 | None:intergenic | 25.0% |
| !! | GAGTTTTCATGAAATATTGA+TGG | - | chr4_4:39990925-39990944 | None:intergenic | 25.0% |
| !! | TAAAGCAATTTTCTACATTC+GGG | + | chr4_4:39991151-39991170 | Msa0680760:intron | 25.0% |
| ! | TTTCTCCGATTTCAAAATTT+GGG | - | chr4_4:39991233-39991252 | None:intergenic | 25.0% |
| !! | TTTTCTCCGATTTCAAAATT+TGG | - | chr4_4:39991234-39991253 | None:intergenic | 25.0% |
| ! | GCTGTAAAAAAAAAGTTCAT+TGG | - | chr4_4:39991401-39991420 | None:intergenic | 25.0% |
| !!! | TTCAACACATATTTTCTAGT+TGG | + | chr4_4:39991448-39991467 | Msa0680760:intron | 25.0% |
| ! | TGTATCTCACTAAATTTATG+TGG | + | chr4_4:39991483-39991502 | Msa0680760:intron | 25.0% |
| !!! | TCTCTAACACACATTTTAAT+TGG | - | chr4_4:39991544-39991563 | None:intergenic | 25.0% |
| ! | AGTTATCATCATAAACATCT+TGG | - | chr4_4:39991691-39991710 | None:intergenic | 25.0% |
| ! | TAACTACAAGAAAATACGAA+TGG | + | chr4_4:39991706-39991725 | Msa0680760:CDS | 25.0% |
| ! | TTTGTCCAATTAATGCTAAT+CGG | - | chr4_4:39991964-39991983 | None:intergenic | 25.0% |
| ! | ATGATTCATATTTGGATGAT+AGG | - | chr4_4:39992134-39992153 | None:intergenic | 25.0% |
| ! | GATGCCTTATTACATTGTAT+TGG | + | chr4_4:39987132-39987151 | Msa0680760:five_prime_UTR | 30.0% |
| ! | ATTAAAATTGGTAGTTCCAG+CGG | - | chr4_4:39987341-39987360 | None:intergenic | 30.0% |
| TACAGATTTGACATCTCAAT+GGG | + | chr4_4:39987449-39987468 | Msa0680760:intron | 30.0% | |
| TCAATGGGTGTTAATACAAT+GGG | + | chr4_4:39987464-39987483 | Msa0680760:CDS | 30.0% | |
| TTTATTGTCAAAGAGAGAGT+AGG | - | chr4_4:39987671-39987690 | None:intergenic | 30.0% | |
| ! | TTTTCTATAATAGTGACCAG+AGG | - | chr4_4:39988258-39988277 | None:intergenic | 30.0% |
| TATAATTAATAGTGACCGGA+AGG | + | chr4_4:39988377-39988396 | Msa0680760:intron | 30.0% | |
| CTATTTAGGTCTTTCTTGTT+TGG | - | chr4_4:39988411-39988430 | None:intergenic | 30.0% | |
| GGAGTGTGTTTCAAAAAAAA+TGG | + | chr4_4:39988498-39988517 | Msa0680760:intron | 30.0% | |
| GTGTGTTTCAAAAAAAATGG+AGG | + | chr4_4:39988501-39988520 | Msa0680760:intron | 30.0% | |
| TATTTCTTAACCATTGCCAT+AGG | - | chr4_4:39988593-39988612 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAGGGTCTTTTCCA+AGG | - | chr4_4:39988822-39988841 | None:intergenic | 30.0% |
| CACACATAAGCTAGAATTAA+CGG | - | chr4_4:39988906-39988925 | None:intergenic | 30.0% | |
| !! | TTAATTCTAGCTTATGTGTG+CGG | + | chr4_4:39988906-39988925 | Msa0680760:intron | 30.0% |
| AAGTATGCGTTGAAAGATTA+TGG | + | chr4_4:39989089-39989108 | Msa0680760:CDS | 30.0% | |
| !!! | AATTGGCTCTAATTTTGCAT+TGG | - | chr4_4:39989223-39989242 | None:intergenic | 30.0% |
| AAAATTAGAGCCAATTTGCA+TGG | + | chr4_4:39989227-39989246 | Msa0680760:intron | 30.0% | |
| ! | GATTGAATATTTTCTCTGCT+TGG | + | chr4_4:39989438-39989457 | Msa0680760:intron | 30.0% |
| !!! | TTTTTTGCCAAATAATCTCG+TGG | + | chr4_4:39989716-39989735 | Msa0680760:intron | 30.0% |
| ! | TTTTTGCCAAATAATCTCGT+GGG | + | chr4_4:39989717-39989736 | Msa0680760:intron | 30.0% |
| ! | GAGTTTGAATTCTTTTTACG+TGG | + | chr4_4:39989884-39989903 | Msa0680760:intron | 30.0% |
| TAAAGGTAAATACGAAAGAG+TGG | - | chr4_4:39990315-39990334 | None:intergenic | 30.0% | |
| AAATAGGTCTCAATTTACGT+GGG | - | chr4_4:39990396-39990415 | None:intergenic | 30.0% | |
| TAAATAGGTCTCAATTTACG+TGG | - | chr4_4:39990397-39990416 | None:intergenic | 30.0% | |
| AAGGATTGAGCTTCTTAAAT+TGG | - | chr4_4:39990566-39990585 | None:intergenic | 30.0% | |
| ! | TATGCACTAGTTATTTCAAC+GGG | + | chr4_4:39990710-39990729 | Msa0680760:intron | 30.0% |
| AATATTGATGGGAAATGTTG+TGG | - | chr4_4:39990913-39990932 | None:intergenic | 30.0% | |
| CGATTTCAAAATTTGGGTAT+GGG | - | chr4_4:39991227-39991246 | None:intergenic | 30.0% | |
| !!! | CCATACCCAAATTTTGAAAT+CGG | + | chr4_4:39991225-39991244 | Msa0680760:intron | 30.0% |
| ATACCCAAACTCAATGAAAA+CGG | + | chr4_4:39991263-39991282 | Msa0680760:intron | 30.0% | |
| AAAATATATCCACTCCTTCT+AGG | - | chr4_4:39991353-39991372 | None:intergenic | 30.0% | |
| ! | AGAAGGAGTGGATATATTTT+TGG | + | chr4_4:39991353-39991372 | Msa0680760:intron | 30.0% |
| ATCATCATAAACATCTTGGA+AGG | - | chr4_4:39991687-39991706 | None:intergenic | 30.0% | |
| ATACGAACACGGAAAATTTA+AGG | + | chr4_4:39991890-39991909 | Msa0680760:CDS | 30.0% | |
| TTGTCCAATTAATGCTAATC+GGG | - | chr4_4:39991963-39991982 | None:intergenic | 30.0% | |
| AGATGCTGCAGTTGAAAATT+TGG | + | chr4_4:39987255-39987274 | Msa0680760:five_prime_UTR | 35.0% | |
| GATGCTGCAGTTGAAAATTT+GGG | + | chr4_4:39987256-39987275 | Msa0680760:five_prime_UTR | 35.0% | |
| CATTGAGATGTCAAATCTGT+AGG | - | chr4_4:39987450-39987469 | None:intergenic | 35.0% | |
| CTACAGATTTGACATCTCAA+TGG | + | chr4_4:39987448-39987467 | Msa0680760:intron | 35.0% | |
| CTCAATGGGTGTTAATACAA+TGG | + | chr4_4:39987463-39987482 | Msa0680760:CDS | 35.0% | |
| AAAATGTTAACTAGTGCCCT+TGG | + | chr4_4:39988753-39988772 | Msa0680760:intron | 35.0% | |
| AAATGTTAACTAGTGCCCTT+GGG | + | chr4_4:39988754-39988773 | Msa0680760:intron | 35.0% | |
| !! | TAATTCTAGCTTATGTGTGC+GGG | + | chr4_4:39988907-39988926 | Msa0680760:intron | 35.0% |
| TCAAGAGAAACCATTTGAGA+TGG | + | chr4_4:39988956-39988975 | Msa0680760:CDS | 35.0% | |
| ! | CAAGAGAAACCATTTGAGAT+GGG | + | chr4_4:39988957-39988976 | Msa0680760:CDS | 35.0% |
| !! | TCTGTGTGTATGTCTAGTTT+TGG | - | chr4_4:39989005-39989024 | None:intergenic | 35.0% |
| ACACACAGAAATGAATTTGC+TGG | + | chr4_4:39989016-39989035 | Msa0680760:CDS | 35.0% | |
| TGAATTACGAGCAATGAATG+TGG | + | chr4_4:39989052-39989071 | Msa0680760:CDS | 35.0% | |
| CTTGTACTAGTTACCATTGT+GGG | - | chr4_4:39989341-39989360 | None:intergenic | 35.0% | |
| AATGGTAACTAGTACAAGCA+AGG | + | chr4_4:39989343-39989362 | Msa0680760:CDS | 35.0% | |
| GTGAATAAGAGTAGAGTTCA+AGG | + | chr4_4:39989517-39989536 | Msa0680760:intron | 35.0% | |
| TTTCTACCCACGAGATTATT+TGG | - | chr4_4:39989726-39989745 | None:intergenic | 35.0% | |
| ! | GAATTCTTTTTACGTGGTTC+AGG | + | chr4_4:39989890-39989909 | Msa0680760:intron | 35.0% |
| GATAGTATGATATGTGCCTA+TGG | + | chr4_4:39990174-39990193 | Msa0680760:CDS | 35.0% | |
| ATGATATGTGCCTATGGTAA+AGG | + | chr4_4:39990180-39990199 | Msa0680760:CDS | 35.0% | |
| TGATATGTGCCTATGGTAAA+GGG | + | chr4_4:39990181-39990200 | Msa0680760:CDS | 35.0% | |
| ! | GGGAAATTGCCATATTTTCT+TGG | + | chr4_4:39990201-39990220 | Msa0680760:CDS | 35.0% |
| CTGGGATTACCAAGAAAATA+TGG | - | chr4_4:39990213-39990232 | None:intergenic | 35.0% | |
| !! | CATATTTTCTTGGTAATCCC+AGG | + | chr4_4:39990211-39990230 | Msa0680760:CDS | 35.0% |
| ! | ACGATATCTAAGATTGTCCT+GGG | - | chr4_4:39990231-39990250 | None:intergenic | 35.0% |
| ! | TACGATATCTAAGATTGTCC+TGG | - | chr4_4:39990232-39990251 | None:intergenic | 35.0% |
| TATGTAGATACCTGCAGATT+TGG | + | chr4_4:39990778-39990797 | Msa0680760:intron | 35.0% | |
| ! | TGGACATCAGAAATTTTGAG+AGG | - | chr4_4:39990893-39990912 | None:intergenic | 35.0% |
| ! | AAAAGCAGCCATACTTTTCA+AGG | - | chr4_4:39990996-39991015 | None:intergenic | 35.0% |
| TTCAAAATTTGGGTATGGGA+CGG | - | chr4_4:39991223-39991242 | None:intergenic | 35.0% | |
| CCGATTTCAAAATTTGGGTA+TGG | - | chr4_4:39991228-39991247 | None:intergenic | 35.0% | |
| TTGAGTTTGGGTATGAGTTT+GGG | - | chr4_4:39991257-39991276 | None:intergenic | 35.0% | |
| ATTGAGTTTGGGTATGAGTT+TGG | - | chr4_4:39991258-39991277 | None:intergenic | 35.0% | |
| TACCCAAACTCAATGAAAAC+GGG | + | chr4_4:39991264-39991283 | Msa0680760:intron | 35.0% | |
| CATAAACATCTTGGAAGGAA+TGG | - | chr4_4:39991682-39991701 | None:intergenic | 35.0% | |
| !! | ACTGCTTTGAAAAACACGTA+AGG | - | chr4_4:39991758-39991777 | None:intergenic | 35.0% |
| !! | TAGCTTTGATGATACGAACA+CGG | + | chr4_4:39991879-39991898 | Msa0680760:intron | 35.0% |
| GAACACGGAAAATTTAAGGA+GGG | + | chr4_4:39991894-39991913 | Msa0680760:CDS | 35.0% | |
| AAATTTAAGGAGGGCAACAA+AGG | + | chr4_4:39991903-39991922 | Msa0680760:CDS | 35.0% | |
| AATTTAAGGAGGGCAACAAA+GGG | + | chr4_4:39991904-39991923 | Msa0680760:CDS | 35.0% | |
| TTGACCCGATTAGCATTAAT+TGG | + | chr4_4:39991956-39991975 | Msa0680760:CDS | 35.0% | |
| TATATACTACCCAAAATGGC+TGG | + | chr4_4:39992045-39992064 | Msa0680760:three_prime_UTR | 35.0% | |
| !! | TAGGAATTTCCAGCCATTTT+GGG | - | chr4_4:39992057-39992076 | None:intergenic | 35.0% |
| ! | ATAGGAATTTCCAGCCATTT+TGG | - | chr4_4:39992058-39992077 | None:intergenic | 35.0% |
| TCGAGTGCTAAGAGATAAGT+TGG | + | chr4_4:39987183-39987202 | Msa0680760:five_prime_UTR | 40.0% | |
| CGAGTGCTAAGAGATAAGTT+GGG | + | chr4_4:39987184-39987203 | Msa0680760:five_prime_UTR | 40.0% | |
| ! | CTAAGAGATAAGTTGGGTGA+AGG | + | chr4_4:39987190-39987209 | Msa0680760:five_prime_UTR | 40.0% |
| TGTTTGGTAAGTACACCTTC+CGG | - | chr4_4:39988395-39988414 | None:intergenic | 40.0% | |
| TAGTTGTTTAACCATGCCCT+TGG | + | chr4_4:39988702-39988721 | Msa0680760:intron | 40.0% | |
| !! | AATTCTAGCTTATGTGTGCG+GGG | + | chr4_4:39988908-39988927 | Msa0680760:intron | 40.0% |
| TTAGAGCCAATTTGCATGGT+TGG | + | chr4_4:39989231-39989250 | Msa0680760:intron | 40.0% | |
| GTGGGACGTATAATGATCAA+TGG | - | chr4_4:39989323-39989342 | None:intergenic | 40.0% | |
| GATCATTATACGTCCCACAA+TGG | + | chr4_4:39989325-39989344 | Msa0680760:CDS | 40.0% | |
| GCTTGTACTAGTTACCATTG+TGG | - | chr4_4:39989342-39989361 | None:intergenic | 40.0% | |
| TCTACATAATACAACGTCCC+TGG | + | chr4_4:39989795-39989814 | Msa0680760:intron | 40.0% | |
| ATAGCTTAGCTTAGCTACCA+GGG | - | chr4_4:39989815-39989834 | None:intergenic | 40.0% | |
| TGGCAATTTCCCTTTACCAT+AGG | - | chr4_4:39990193-39990212 | None:intergenic | 40.0% | |
| !! | ATTTACGTGGGTGTTGAGTA+TGG | - | chr4_4:39990384-39990403 | None:intergenic | 40.0% |
| ! | CAATTGATGACCAAATCTGC+AGG | - | chr4_4:39990791-39990810 | None:intergenic | 40.0% |
| ACTCCTTGCCTAAACAAAGA+TGG | + | chr4_4:39990941-39990960 | Msa0680760:CDS | 40.0% | |
| CTCCTTGCCTAAACAAAGAT+GGG | + | chr4_4:39990942-39990961 | Msa0680760:CDS | 40.0% | |
| ! | TTCCCATCTTTGTTTAGGCA+AGG | - | chr4_4:39990947-39990966 | None:intergenic | 40.0% |
| ! | TTGGCTTCCCATCTTTGTTT+AGG | - | chr4_4:39990952-39990971 | None:intergenic | 40.0% |
| AAGCCAATAGTCATCTCCAA+GGG | + | chr4_4:39990965-39990984 | Msa0680760:CDS | 40.0% | |
| ATTCCCTTGGAGATGACTAT+TGG | - | chr4_4:39990971-39990990 | None:intergenic | 40.0% | |
| !! | ACTTTTCAAGGCAATTCCCT+TGG | - | chr4_4:39990984-39991003 | None:intergenic | 40.0% |
| GGGAATTGCCTTGAAAAGTA+TGG | + | chr4_4:39990985-39991004 | Msa0680760:intron | 40.0% | |
| ! | GCAATTTTCTACATTCGGGA+CGG | + | chr4_4:39991155-39991174 | Msa0680760:intron | 40.0% |
| ! | CAATTTTCTACATTCGGGAC+GGG | + | chr4_4:39991156-39991175 | Msa0680760:intron | 40.0% |
| TCAAAATTTGGGTATGGGAC+GGG | - | chr4_4:39991222-39991241 | None:intergenic | 40.0% | |
| ACCCAAACTCAATGAAAACG+GGG | + | chr4_4:39991265-39991284 | Msa0680760:intron | 40.0% | |
| ! | TCCCCGTTTTCATTGAGTTT+GGG | - | chr4_4:39991269-39991288 | None:intergenic | 40.0% |
| ! | TTCCCCGTTTTCATTGAGTT+TGG | - | chr4_4:39991270-39991289 | None:intergenic | 40.0% |
| CGAATCAAACCCAATTTGAC+GGG | - | chr4_4:39991295-39991314 | None:intergenic | 40.0% | |
| CCGAATCAAACCCAATTTGA+CGG | - | chr4_4:39991296-39991315 | None:intergenic | 40.0% | |
| CCGTCAAATTGGGTTTGATT+CGG | + | chr4_4:39991293-39991312 | Msa0680760:intron | 40.0% | |
| !! | CAAATTGGGTTTGATTCGGT+CGG | + | chr4_4:39991297-39991316 | Msa0680760:intron | 40.0% |
| !! | AAATTGGGTTTGATTCGGTC+GGG | + | chr4_4:39991298-39991317 | Msa0680760:intron | 40.0% |
| CGAACACGGAAAATTTAAGG+AGG | + | chr4_4:39991893-39991912 | Msa0680760:CDS | 40.0% | |
| GCAACAAAGGGCTATAACAT+GGG | + | chr4_4:39991916-39991935 | Msa0680760:CDS | 40.0% | |
| CAACAAAGGGCTATAACATG+GGG | + | chr4_4:39991917-39991936 | Msa0680760:CDS | 40.0% | |
| ATGATGAATACGCACATTCC+TGG | + | chr4_4:39991988-39992007 | Msa0680760:CDS | 40.0% | |
| AAGAAGGTTGTAGCAGTAGC+TGG | + | chr4_4:39987232-39987251 | Msa0680760:five_prime_UTR | 45.0% | |
| TTCCAGCGGAATGGACAATA+AGG | - | chr4_4:39987327-39987346 | None:intergenic | 45.0% | |
| ! | AATTGGTAGTTCCAGCGGAA+TGG | - | chr4_4:39987336-39987355 | None:intergenic | 45.0% |
| GGTCCTTGTCCACATATCTA+CGG | + | chr4_4:39987532-39987551 | Msa0680760:CDS | 45.0% | |
| GTCCTTGTCCACATATCTAC+GGG | + | chr4_4:39987533-39987552 | Msa0680760:CDS | 45.0% | |
| TACCCGTAGATATGTGGACA+AGG | - | chr4_4:39987538-39987557 | None:intergenic | 45.0% | |
| GGTACTTACCCGTAGATATG+TGG | - | chr4_4:39987544-39987563 | None:intergenic | 45.0% | |
| ACTCAATCAACTACAGCCTC+TGG | + | chr4_4:39988239-39988258 | Msa0680760:intron | 45.0% | |
| TCTTGCTAACCAGTGTCCTA+TGG | + | chr4_4:39988574-39988593 | Msa0680760:intron | 45.0% | |
| TAACCAGTGTCCTATGGCAA+TGG | + | chr4_4:39988580-39988599 | Msa0680760:intron | 45.0% | |
| TAACCATTGCCATAGGACAC+TGG | - | chr4_4:39988586-39988605 | None:intergenic | 45.0% | |
| GTTTAACCATGCCCTTGGAA+CGG | + | chr4_4:39988707-39988726 | Msa0680760:intron | 45.0% | |
| TTTAACCATGCCCTTGGAAC+GGG | + | chr4_4:39988708-39988727 | Msa0680760:intron | 45.0% | |
| AGAATGCTAACCCGTTCCAA+GGG | - | chr4_4:39988721-39988740 | None:intergenic | 45.0% | |
| GATTGACGACCCATCTCAAA+TGG | - | chr4_4:39988969-39988988 | None:intergenic | 45.0% | |
| ! | TGGGTCGTCAATCTCTAGAA+AGG | + | chr4_4:39988976-39988995 | Msa0680760:CDS | 45.0% |
| GTTTGGCCAACCATGCAAAT+TGG | - | chr4_4:39989240-39989259 | None:intergenic | 45.0% | |
| ! | ACAAGCAAGGATCCTTTTCC+TGG | + | chr4_4:39989356-39989375 | Msa0680760:CDS | 45.0% |
| CCTTCAATCCAACCAGGAAA+AGG | - | chr4_4:39989371-39989390 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGGTTGGATTGA+AGG | + | chr4_4:39989368-39989387 | Msa0680760:CDS | 45.0% |
| CTTTGACCTTCAATCCAACC+AGG | - | chr4_4:39989377-39989396 | None:intergenic | 45.0% | |
| CTGGTTGGATTGAAGGTCAA+AGG | + | chr4_4:39989375-39989394 | Msa0680760:CDS | 45.0% | |
| CATAGCTTAGCTTAGCTACC+AGG | - | chr4_4:39989816-39989835 | None:intergenic | 45.0% | |
| ! | TCTTTTTACGTGGTTCAGGC+AGG | + | chr4_4:39989894-39989913 | Msa0680760:intron | 45.0% |
| GAAGCCAATAGTCATCTCCA+AGG | + | chr4_4:39990964-39990983 | Msa0680760:CDS | 45.0% | |
| TCTAACAAACCTCAAGTGGC+AGG | - | chr4_4:39991045-39991064 | None:intergenic | 45.0% | |
| TCGGTCTAACAAACCTCAAG+TGG | - | chr4_4:39991049-39991068 | None:intergenic | 45.0% | |
| !! | GTTTTGTTGCCATGCCTAGA+AGG | + | chr4_4:39991336-39991355 | Msa0680760:intron | 45.0% |
| ATATCCACTCCTTCTAGGCA+TGG | - | chr4_4:39991348-39991367 | None:intergenic | 45.0% | |
| GGCAACAAAGGGCTATAACA+TGG | + | chr4_4:39991915-39991934 | Msa0680760:CDS | 45.0% | |
| AAGGGCTATAACATGGGGAA+TGG | + | chr4_4:39991922-39991941 | Msa0680760:CDS | 45.0% | |
| ATTGCATACTTGACGAGACC+AGG | - | chr4_4:39992009-39992028 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAAAAAATTGATA+TGG | + | chr4_4:39989493-39989512 | Msa0680760:intron | 5.0% |
| !!! | CATTTATAAATAATTTATTT+TGG | - | chr4_4:39989594-39989613 | None:intergenic | 5.0% |
| !!! | TAATTCTATTTTATATATAA+TGG | + | chr4_4:39990112-39990131 | Msa0680760:intron | 5.0% |
| GACCTTATTGTCCATTCCGC+TGG | + | chr4_4:39987322-39987341 | Msa0680760:CDS | 50.0% | |
| GAGAATGCTAACCCGTTCCA+AGG | - | chr4_4:39988722-39988741 | None:intergenic | 50.0% | |
| TTATGTGTGCGGGGAGACTA+AGG | + | chr4_4:39988917-39988936 | Msa0680760:CDS | 50.0% | |
| ! | GCAAGGATCCTTTTCCTGGT+TGG | + | chr4_4:39989360-39989379 | Msa0680760:CDS | 50.0% |
| CTCAAGTGGCAGGACATATC+GGG | - | chr4_4:39991035-39991054 | None:intergenic | 50.0% | |
| CCTCAAGTGGCAGGACATAT+CGG | - | chr4_4:39991036-39991055 | None:intergenic | 50.0% | |
| ! | TTCTACATTCGGGACGGGTT+TGG | + | chr4_4:39991161-39991180 | Msa0680760:intron | 50.0% |
| ! | TCTACATTCGGGACGGGTTT+GGG | + | chr4_4:39991162-39991181 | Msa0680760:intron | 50.0% |
| TTTGGGTATGGGACGGGTAA+CGG | - | chr4_4:39991216-39991235 | None:intergenic | 50.0% | |
| ACGGGGAAAACCCGTCAAAT+TGG | + | chr4_4:39991282-39991301 | Msa0680760:intron | 50.0% | |
| CGGGGAAAACCCGTCAAATT+GGG | + | chr4_4:39991283-39991302 | Msa0680760:intron | 50.0% | |
| !! | TTGATTCGGTCGGGTAACCA+CGG | + | chr4_4:39991307-39991326 | Msa0680760:intron | 50.0% |
| GGCAACAAAACTCATACCCG+TGG | - | chr4_4:39991327-39991346 | None:intergenic | 50.0% | |
| TCTCGTCAGTCAGTCTGAGT+GGG | + | chr4_4:39992396-39992415 | Msa0680760:three_prime_UTR | 50.0% | |
| AACTAGTGCCCTTGGGACAC+TGG | + | chr4_4:39988761-39988780 | Msa0680760:intron | 55.0% | |
| ! | CCGATATGTCCTGCCACTTG+AGG | + | chr4_4:39991033-39991052 | Msa0680760:intron | 55.0% |
| ! | ATTCGGGACGGGTTTGGGTA+TGG | + | chr4_4:39991167-39991186 | Msa0680760:intron | 55.0% |
| ! | TTCGGGACGGGTTTGGGTAT+GGG | + | chr4_4:39991168-39991187 | Msa0680760:intron | 55.0% |
| !! | GGGACGGGTAACGGGTATAT+AGG | - | chr4_4:39991207-39991226 | None:intergenic | 55.0% |
| TTGGGTATGGGACGGGTAAC+GGG | - | chr4_4:39991215-39991234 | None:intergenic | 55.0% | |
| !! | TGATTCGGTCGGGTAACCAC+GGG | + | chr4_4:39991308-39991327 | Msa0680760:intron | 55.0% |
| GTTGCCATGCCTAGAAGGAG+TGG | + | chr4_4:39991341-39991360 | Msa0680760:intron | 55.0% | |
| CTCTCGTCAGTCAGTCTGAG+TGG | + | chr4_4:39992395-39992414 | Msa0680760:three_prime_UTR | 55.0% | |
| GCTAACCCGTTCCAAGGGCA+TGG | - | chr4_4:39988716-39988735 | None:intergenic | 60.0% | |
| GTGTGCGGGGAGACTAAGGA+AGG | + | chr4_4:39988921-39988940 | Msa0680760:CDS | 60.0% | |
| ! | GACGGGTTTGGGTATGGGTG+CGG | + | chr4_4:39991173-39991192 | Msa0680760:intron | 60.0% |
| ACGGGTTTGGGTATGGGTGC+GGG | + | chr4_4:39991174-39991193 | Msa0680760:intron | 60.0% | |
| TTTGGGTATGGGTGCGGGGT+GGG | + | chr4_4:39991179-39991198 | Msa0680760:intron | 60.0% | |
| GGACACTGGCGCCCTGGTTA+AGG | + | chr4_4:39988775-39988794 | Msa0680760:intron | 65.0% | |
| CGGGTTTGGGTATGGGTGCG+GGG | + | chr4_4:39991175-39991194 | Msa0680760:intron | 65.0% | |
| GTTTGGGTATGGGTGCGGGG+TGG | + | chr4_4:39991178-39991197 | Msa0680760:intron | 65.0% | |
| ! | CCAGGGCGCCAGTGTCCCAA+GGG | - | chr4_4:39988772-39988791 | None:intergenic | 70.0% |
| ! | ACCAGGGCGCCAGTGTCCCA+AGG | - | chr4_4:39988773-39988792 | None:intergenic | 70.0% |
| CCCTTGGGACACTGGCGCCC+TGG | + | chr4_4:39988769-39988788 | Msa0680760:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 39987074 | 39992426 | 39987074 | ID=Msa0680760;Name=Msa0680760 |
| chr4_4 | mRNA | 39987074 | 39992426 | 39987074 | ID=Msa0680760-mRNA-1;Parent=Msa0680760;Name=Msa0680760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=233|0.87|0.77|1|0.75|0.55|9|259|354 |
| chr4_4 | exon | 39987074 | 39987365 | 39987074 | ID=Msa0680760-mRNA-1:exon:9534;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39987454 | 39987554 | 39987454 | ID=Msa0680760-mRNA-1:exon:9535;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39988916 | 39989120 | 39988916 | ID=Msa0680760-mRNA-1:exon:9536;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39989235 | 39989396 | 39989235 | ID=Msa0680760-mRNA-1:exon:9537;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39990167 | 39990248 | 39990167 | ID=Msa0680760-mRNA-1:exon:9538;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39990785 | 39991001 | 39990785 | ID=Msa0680760-mRNA-1:exon:9539;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39991693 | 39991777 | 39991693 | ID=Msa0680760-mRNA-1:exon:9540;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39991882 | 39992198 | 39991882 | ID=Msa0680760-mRNA-1:exon:9541;Parent=Msa0680760-mRNA-1 |
| chr4_4 | exon | 39992331 | 39992426 | 39992331 | ID=Msa0680760-mRNA-1:exon:9542;Parent=Msa0680760-mRNA-1 |
| chr4_4 | five_prime_UTR | 39987074 | 39987306 | 39987074 | ID=Msa0680760-mRNA-1:five_prime_utr;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39987307 | 39987365 | 39987307 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39987454 | 39987554 | 39987454 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39988916 | 39989120 | 39988916 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39989235 | 39989396 | 39989235 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39990167 | 39990248 | 39990167 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39990785 | 39991001 | 39990785 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39991693 | 39991777 | 39991693 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | CDS | 39991882 | 39992035 | 39991882 | ID=Msa0680760-mRNA-1:cds;Parent=Msa0680760-mRNA-1 |
| chr4_4 | three_prime_UTR | 39992036 | 39992198 | 39992036 | ID=Msa0680760-mRNA-1:three_prime_utr;Parent=Msa0680760-mRNA-1 |
| chr4_4 | three_prime_UTR | 39992331 | 39992426 | 39992331 | ID=Msa0680760-mRNA-1:three_prime_utr;Parent=Msa0680760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
