Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673850 | XP_039689920.1 | 95.868 | 363 | 9 | 1 | 1 | 363 | 1 | 357 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673850 | sp|O24305|M3OM1_PEA | 78.512 | 363 | 75 | 2 | 1 | 363 | 1 | 360 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673850 | A0A072UJL0 | 95.592 | 363 | 10 | 1 | 1 | 363 | 1 | 357 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0595390 | Msa0673850 | 0.807900 | 4.031800e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673850 | MtrunA17_Chr4g0014591 | 95.592 | 363 | 10 | 1 | 1 | 363 | 1 | 357 | 0.0 | 707 |
| Msa0673850 | MtrunA17_Chr4g0014661 | 95.041 | 363 | 12 | 1 | 1 | 363 | 1 | 357 | 0.0 | 705 |
| Msa0673850 | MtrunA17_Chr4g0046361 | 76.584 | 363 | 83 | 1 | 1 | 363 | 1 | 361 | 0.0 | 579 |
| Msa0673850 | MtrunA17_Chr4g0014681 | 77.473 | 364 | 80 | 2 | 1 | 363 | 1 | 363 | 0.0 | 566 |
| Msa0673850 | MtrunA17_Chr4g0014561 | 76.923 | 364 | 82 | 2 | 1 | 363 | 1 | 363 | 0.0 | 562 |
| Msa0673850 | MtrunA17_Chr4g0014641 | 75.824 | 364 | 86 | 2 | 1 | 363 | 1 | 363 | 0.0 | 553 |
| Msa0673850 | MtrunA17_Chr4g0046341 | 76.648 | 364 | 84 | 1 | 1 | 363 | 1 | 364 | 0.0 | 544 |
| Msa0673850 | MtrunA17_Chr4g0014601 | 94.737 | 266 | 8 | 1 | 1 | 266 | 1 | 260 | 0.0 | 510 |
| Msa0673850 | MtrunA17_Chr7g0219141 | 48.883 | 358 | 177 | 4 | 6 | 363 | 6 | 357 | 6.81e-122 | 355 |
| Msa0673850 | MtrunA17_Chr1g0188391 | 49.727 | 366 | 176 | 6 | 1 | 363 | 1 | 361 | 6.45e-121 | 353 |
| Msa0673850 | MtrunA17_Chr7g0219161 | 49.422 | 346 | 169 | 4 | 6 | 351 | 6 | 345 | 2.68e-119 | 349 |
| Msa0673850 | MtrunA17_Chr7g0223231 | 46.910 | 356 | 177 | 4 | 6 | 361 | 5 | 348 | 2.04e-116 | 341 |
| Msa0673850 | MtrunA17_Chr5g0432251 | 47.324 | 355 | 179 | 5 | 11 | 363 | 11 | 359 | 7.54e-115 | 338 |
| Msa0673850 | MtrunA17_Chr5g0432301 | 45.753 | 365 | 187 | 6 | 3 | 362 | 1 | 359 | 6.33e-113 | 333 |
| Msa0673850 | MtrunA17_Chr4g0046531 | 49.587 | 363 | 174 | 4 | 1 | 362 | 1 | 355 | 7.27e-111 | 339 |
| Msa0673850 | MtrunA17_Chr4g0046531 | 48.626 | 364 | 178 | 4 | 1 | 363 | 363 | 718 | 1.18e-108 | 333 |
| Msa0673850 | MtrunA17_Chr7g0223241 | 46.348 | 356 | 179 | 4 | 6 | 361 | 5 | 348 | 7.46e-110 | 325 |
| Msa0673850 | MtrunA17_Chr5g0432241 | 45.580 | 362 | 189 | 5 | 4 | 363 | 5 | 360 | 1.76e-109 | 324 |
| Msa0673850 | MtrunA17_Chr5g0432261 | 45.042 | 353 | 162 | 3 | 11 | 363 | 7 | 327 | 1.95e-104 | 310 |
| Msa0673850 | MtrunA17_Chr5g0432211 | 44.225 | 355 | 176 | 6 | 11 | 363 | 11 | 345 | 2.20e-104 | 310 |
| Msa0673850 | MtrunA17_Chr4g0040621 | 44.068 | 354 | 189 | 3 | 11 | 363 | 24 | 369 | 4.01e-101 | 303 |
| Msa0673850 | MtrunA17_Chr1g0188371 | 46.450 | 338 | 172 | 5 | 9 | 343 | 9 | 340 | 4.39e-98 | 296 |
| Msa0673850 | MtrunA17_Chr3g0121301 | 35.756 | 344 | 204 | 10 | 20 | 359 | 27 | 357 | 2.55e-57 | 190 |
| Msa0673850 | MtrunA17_Chr4g0022021 | 32.877 | 365 | 231 | 8 | 3 | 363 | 14 | 368 | 4.33e-56 | 187 |
| Msa0673850 | MtrunA17_Chr4g0021981 | 32.603 | 365 | 232 | 8 | 3 | 363 | 14 | 368 | 4.35e-55 | 184 |
| Msa0673850 | MtrunA17_Chr7g0219171 | 58.209 | 134 | 55 | 1 | 230 | 363 | 116 | 248 | 6.98e-50 | 167 |
| Msa0673850 | MtrunA17_Chr7g0219171 | 44.068 | 118 | 59 | 1 | 6 | 123 | 6 | 116 | 1.33e-26 | 106 |
| Msa0673850 | MtrunA17_Chr4g0014611 | 94.000 | 100 | 6 | 0 | 264 | 363 | 8 | 107 | 1.97e-44 | 148 |
| Msa0673850 | MtrunA17_Chr5g0448091 | 32.738 | 336 | 207 | 12 | 29 | 356 | 31 | 355 | 4.28e-44 | 155 |
| Msa0673850 | MtrunA17_Chr3g0128011 | 32.958 | 355 | 202 | 12 | 9 | 349 | 71 | 403 | 1.08e-41 | 150 |
| Msa0673850 | MtrunA17_Chr1g0200491 | 30.682 | 352 | 226 | 8 | 5 | 349 | 17 | 357 | 4.47e-41 | 148 |
| Msa0673850 | MtrunA17_Chr4g0014671 | 94.286 | 105 | 6 | 0 | 259 | 363 | 30 | 134 | 5.44e-41 | 140 |
| Msa0673850 | MtrunA17_Chr1g0163611 | 29.714 | 350 | 226 | 9 | 24 | 362 | 29 | 369 | 5.22e-39 | 142 |
| Msa0673850 | MtrunA17_Chr8g0367501 | 29.752 | 363 | 241 | 9 | 5 | 361 | 6 | 360 | 8.44e-39 | 143 |
| Msa0673850 | MtrunA17_Chr8g0367441 | 30.769 | 325 | 212 | 8 | 26 | 344 | 41 | 358 | 1.26e-38 | 141 |
| Msa0673850 | MtrunA17_Chr1g0163601 | 29.641 | 334 | 221 | 7 | 24 | 350 | 29 | 355 | 1.63e-38 | 141 |
| Msa0673850 | MtrunA17_Chr7g0218131 | 29.882 | 338 | 222 | 9 | 32 | 362 | 40 | 369 | 2.20e-38 | 140 |
| Msa0673850 | MtrunA17_Chr7g0276401 | 30.473 | 338 | 219 | 10 | 26 | 358 | 42 | 368 | 3.05e-38 | 140 |
| Msa0673850 | MtrunA17_Chr7g0276411 | 30.699 | 329 | 215 | 8 | 26 | 348 | 26 | 347 | 3.42e-38 | 140 |
| Msa0673850 | MtrunA17_Chr7g0218301 | 30.000 | 340 | 219 | 8 | 32 | 361 | 40 | 370 | 5.18e-38 | 140 |
| Msa0673850 | MtrunA17_Chr7g0218271 | 29.706 | 340 | 220 | 8 | 32 | 361 | 40 | 370 | 7.91e-38 | 139 |
| Msa0673850 | MtrunA17_Chr8g0367491 | 29.674 | 337 | 223 | 9 | 26 | 355 | 40 | 369 | 1.02e-37 | 139 |
| Msa0673850 | MtrunA17_Chr8g0367451 | 30.462 | 325 | 213 | 8 | 26 | 344 | 40 | 357 | 9.11e-37 | 136 |
| Msa0673850 | MtrunA17_Chr7g0218261 | 29.341 | 334 | 223 | 8 | 32 | 361 | 39 | 363 | 1.00e-36 | 136 |
| Msa0673850 | MtrunA17_Chr2g0314271 | 32.647 | 340 | 204 | 10 | 31 | 360 | 27 | 351 | 1.02e-35 | 133 |
| Msa0673850 | MtrunA17_Chr7g0218181 | 27.003 | 337 | 230 | 9 | 32 | 362 | 40 | 366 | 1.31e-35 | 133 |
| Msa0673850 | MtrunA17_Chr1g0163621 | 28.869 | 336 | 219 | 9 | 25 | 350 | 44 | 369 | 1.17e-34 | 131 |
| Msa0673850 | MtrunA17_Chr2g0307521 | 29.204 | 339 | 217 | 10 | 32 | 361 | 34 | 358 | 3.02e-34 | 129 |
| Msa0673850 | MtrunA17_Chr7g0218211 | 29.851 | 335 | 221 | 8 | 32 | 361 | 39 | 364 | 5.23e-34 | 129 |
| Msa0673850 | MtrunA17_Chr3g0085211 | 30.581 | 327 | 215 | 8 | 28 | 350 | 38 | 356 | 1.95e-33 | 127 |
| Msa0673850 | MtrunA17_Chr8g0345851 | 32.157 | 255 | 164 | 5 | 98 | 350 | 30 | 277 | 1.52e-32 | 123 |
| Msa0673850 | MtrunA17_Chr8g0367381 | 29.677 | 310 | 188 | 8 | 26 | 330 | 41 | 325 | 3.90e-31 | 120 |
| Msa0673850 | MtrunA17_Chr3g0085201 | 30.746 | 335 | 211 | 12 | 32 | 358 | 29 | 350 | 9.10e-31 | 120 |
| Msa0673850 | MtrunA17_Chr4g0014621 | 93.939 | 66 | 4 | 0 | 298 | 363 | 197 | 262 | 3.85e-28 | 110 |
| Msa0673850 | MtrunA17_Chr3g0130011 | 27.976 | 336 | 216 | 12 | 23 | 348 | 24 | 343 | 1.18e-27 | 111 |
| Msa0673850 | MtrunA17_Chr3g0130061 | 27.083 | 336 | 219 | 12 | 23 | 348 | 24 | 343 | 5.65e-26 | 107 |
| Msa0673850 | MtrunA17_Chr8g0367461 | 38.889 | 108 | 61 | 3 | 250 | 355 | 1 | 105 | 1.28e-17 | 77.8 |
| Msa0673850 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 191 | 348 | 14 | 161 | 3.20e-17 | 78.6 |
| Msa0673850 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 155 | 263 | 4 | 110 | 6.36e-14 | 68.6 |
| Msa0673850 | MtrunA17_Chr4g0011691 | 38.235 | 102 | 53 | 3 | 6 | 107 | 16 | 107 | 8.67e-14 | 70.1 |
| Msa0673850 | MtrunA17_Chr4g0011691 | 38.542 | 96 | 55 | 3 | 265 | 359 | 140 | 232 | 1.81e-11 | 63.5 |
| Msa0673850 | MtrunA17_Chr4g0014551 | 86.364 | 44 | 6 | 0 | 320 | 363 | 1 | 44 | 5.10e-13 | 62.8 |
| Msa0673850 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 234 | 348 | 6 | 119 | 6.74e-11 | 59.7 |
| Msa0673850 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 196 | 261 | 11 | 76 | 6.99e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673850 | AT4G35150.1 | 32.123 | 358 | 183 | 10 | 16 | 362 | 15 | 323 | 1.25e-46 | 162 |
| Msa0673850 | AT4G35160.1 | 33.242 | 364 | 214 | 12 | 16 | 362 | 29 | 380 | 9.13e-45 | 158 |
| Msa0673850 | AT5G54160.1 | 31.933 | 357 | 221 | 10 | 8 | 353 | 4 | 349 | 2.16e-43 | 154 |
| Msa0673850 | AT1G77520.1 | 31.686 | 344 | 216 | 10 | 31 | 362 | 44 | 380 | 1.11e-38 | 142 |
| Msa0673850 | AT3G53140.1 | 31.304 | 345 | 207 | 11 | 31 | 360 | 27 | 356 | 2.11e-36 | 135 |
| Msa0673850 | AT5G53810.1 | 31.988 | 347 | 216 | 9 | 29 | 362 | 38 | 377 | 2.71e-35 | 133 |
| Msa0673850 | AT1G33030.1 | 29.518 | 332 | 215 | 10 | 31 | 353 | 21 | 342 | 3.59e-35 | 132 |
| Msa0673850 | AT1G51990.2 | 30.769 | 338 | 220 | 9 | 33 | 363 | 32 | 362 | 4.63e-35 | 132 |
| Msa0673850 | AT1G51990.1 | 30.473 | 338 | 221 | 9 | 33 | 363 | 32 | 362 | 4.48e-34 | 129 |
| Msa0673850 | AT1G63140.2 | 28.726 | 369 | 241 | 11 | 9 | 362 | 19 | 380 | 8.38e-32 | 123 |
| Msa0673850 | AT1G63140.4 | 28.726 | 369 | 241 | 11 | 9 | 362 | 39 | 400 | 8.55e-32 | 124 |
| Msa0673850 | AT1G77530.1 | 31.105 | 344 | 218 | 9 | 31 | 362 | 44 | 380 | 1.46e-30 | 120 |
| Msa0673850 | AT1G76790.1 | 27.371 | 369 | 222 | 13 | 7 | 355 | 9 | 351 | 3.24e-26 | 108 |
| Msa0673850 | AT1G62900.1 | 32.812 | 192 | 124 | 3 | 173 | 362 | 16 | 204 | 7.28e-24 | 98.2 |
| Msa0673850 | AT1G21130.1 | 26.627 | 338 | 217 | 11 | 31 | 353 | 40 | 361 | 3.06e-21 | 94.4 |
| Msa0673850 | AT1G21100.1 | 26.627 | 338 | 217 | 11 | 31 | 353 | 40 | 361 | 7.89e-21 | 93.2 |
| Msa0673850 | AT1G21110.1 | 25.455 | 330 | 217 | 10 | 31 | 345 | 40 | 355 | 1.48e-20 | 92.4 |
| Msa0673850 | AT1G21120.1 | 26.036 | 338 | 219 | 11 | 31 | 353 | 40 | 361 | 5.06e-20 | 90.9 |
| Msa0673850 | AT1G21120.2 | 26.036 | 338 | 219 | 11 | 31 | 353 | 88 | 409 | 5.77e-20 | 90.9 |
| Msa0673850 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 172 | 362 | 43 | 233 | 1.12e-19 | 87.4 |
| Msa0673850 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 172 | 362 | 143 | 333 | 2.90e-19 | 88.2 |
| Msa0673850 | AT5G37170.3 | 31.214 | 173 | 110 | 5 | 194 | 360 | 14 | 183 | 8.57e-19 | 83.6 |
| Msa0673850 | AT1G63140.1 | 27.239 | 268 | 178 | 8 | 9 | 263 | 39 | 302 | 1.33e-14 | 73.9 |
| Msa0673850 | AT1G33030.2 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 9.24e-14 | 70.9 |
| Msa0673850 | AT1G33030.3 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 2.21e-13 | 70.1 |
Find 69 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.137435 | 4_4:+20647915 | None:intergenic |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_4:+20647806 | None:intergenic |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.284838 | 4_4:-20647393 | Msa0673850:CDS |
| ACAACTACTAATTAAAATTA+AGG | 0.294334 | 4_4:+20646310 | None:intergenic |
| TATAGGACATTAACTTTAGA+AGG | 0.302242 | 4_4:+20647776 | None:intergenic |
| GTTTGAGGGTTTGGAGTCTT+TGG | 0.303653 | 4_4:-20647384 | Msa0673850:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_4:+20647562 | None:intergenic |
| TTGGGAAATTCATGTTTCAT+AGG | 0.306052 | 4_4:+20646207 | None:intergenic |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 4_4:-20646559 | Msa0673850:CDS |
| GTTGATGTGGCAGGTGGGAC+TGG | 0.337992 | 4_4:-20647362 | Msa0673850:CDS |
| CTAAAGTTAATGTCCTATAT+AGG | 0.375731 | 4_4:-20647772 | Msa0673850:CDS |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.388596 | 4_4:-20646553 | Msa0673850:CDS |
| AAGAAAGAGAAAAGAAAGAA+TGG | 0.396191 | 4_4:-20646414 | Msa0673850:CDS |
| CAGGTTGTGGCTAACTTATC+TGG | 0.396383 | 4_4:-20647275 | Msa0673850:CDS |
| TGTTGTTATAACCTAAGCTT+TGG | 0.397828 | 4_4:+20647992 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_4:-20647597 | Msa0673850:CDS |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_4:+20647834 | None:intergenic |
| GATAAACTTAGTTTGTTTCA+AGG | 0.401061 | 4_4:-20647464 | Msa0673850:CDS |
| GCTTAGGTTATAACAACAAA+TGG | 0.425824 | 4_4:-20647987 | Msa0673850:exon |
| CAAAATTTGAACTTTGTTGG+TGG | 0.427047 | 4_4:-20647248 | Msa0673850:CDS |
| ACTCAAAATTTGAACTTTGT+TGG | 0.429435 | 4_4:-20647251 | Msa0673850:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_4:-20646439 | Msa0673850:CDS |
| GCTAATTCAGGAACAGTCAT+AGG | 0.442962 | 4_4:+20647818 | None:intergenic |
| AATGTTCAAGCTTGCTCTCA+AGG | 0.450410 | 4_4:-20647420 | Msa0673850:CDS |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_4:-20647571 | Msa0673850:CDS |
| GATTGCAGCCATGTGTTTGA+GGG | 0.455193 | 4_4:-20647398 | Msa0673850:CDS |
| ATAAACTTAGTTTGTTTCAA+GGG | 0.456335 | 4_4:-20647463 | Msa0673850:CDS |
| ACAACGGTGAAAGGCAAAGA+AGG | 0.456389 | 4_4:-20647710 | Msa0673850:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_4:+20647759 | None:intergenic |
| AGAGACTTGAAGCCACATAC+TGG | 0.465897 | 4_4:+20646346 | None:intergenic |
| GGATTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_4:-20647399 | Msa0673850:CDS |
| GAGTCTTTGGTTGATGTGGC+AGG | 0.479885 | 4_4:-20647371 | Msa0673850:CDS |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.484470 | 4_4:-20646552 | Msa0673850:CDS |
| GCACTCTATGAAAGTGCAAT+GGG | 0.484567 | 4_4:-20647527 | Msa0673850:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_4:-20647589 | Msa0673850:CDS |
| TCTTTGGTTGATGTGGCAGG+TGG | 0.504535 | 4_4:-20647368 | Msa0673850:CDS |
| CTCAAATCAGCTGTGGAACT+AGG | 0.506689 | 4_4:-20647872 | Msa0673850:CDS |
| TTTAGATCAACCACAGGTTG+TGG | 0.518679 | 4_4:-20647288 | Msa0673850:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 4_4:+20647880 | None:intergenic |
| ATAAGACATCACCAAAGCTT+AGG | 0.530352 | 4_4:-20648003 | Msa0673850:five_prime_UTR |
| TGCACTCTATGAAAGTGCAA+TGG | 0.543647 | 4_4:-20647528 | Msa0673850:CDS |
| CAACGGTGAAAGGCAAAGAA+GGG | 0.548081 | 4_4:-20647709 | Msa0673850:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_4:-20647555 | Msa0673850:CDS |
| TTTGGAGTCTTTGGTTGATG+TGG | 0.555368 | 4_4:-20647375 | Msa0673850:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_4:+20647203 | None:intergenic |
| TACAAGATTACTCCAGTATG+TGG | 0.560046 | 4_4:-20646358 | Msa0673850:CDS |
| AGGATAAAGTTTCAAAGATG+AGG | 0.566162 | 4_4:+20647796 | None:intergenic |
| TAAACTTAGTTTGTTTCAAG+GGG | 0.566712 | 4_4:-20647462 | Msa0673850:CDS |
| CTTTCAAAGCTTCTCGTCAG+TGG | 0.568209 | 4_4:-20647653 | Msa0673850:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.577950 | 4_4:-20647971 | Msa0673850:CDS |
| CTTTGGTTGATGTGGCAGGT+GGG | 0.578821 | 4_4:-20647367 | Msa0673850:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_4:-20646461 | Msa0673850:CDS |
| CTGACGAGAAGCTTTGAAAG+AGG | 0.586234 | 4_4:+20647656 | None:intergenic |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_4:+20647587 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.594995 | 4_4:+20647439 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_4:+20646465 | None:intergenic |
| TAGTTTGTTTCAAGGGGCCA+TGG | 0.599443 | 4_4:-20647456 | Msa0673850:CDS |
| GATAAGTTAGCCACAACCTG+TGG | 0.609880 | 4_4:+20647278 | None:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_4:+20647206 | None:intergenic |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4_4:-20647845 | Msa0673850:CDS |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 4_4:-20647879 | Msa0673850:CDS |
| ACTCCAAACCCTCAAACACA+TGG | 0.632186 | 4_4:+20647390 | None:intergenic |
| AACGGTGAAAGGCAAAGAAG+GGG | 0.637209 | 4_4:-20647708 | Msa0673850:CDS |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 4_4:-20647746 | Msa0673850:CDS |
| AAAACTGTGCATTTGATGTG+AGG | 0.654544 | 4_4:+20647308 | None:intergenic |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_4:+20647611 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_4:-20646391 | Msa0673850:CDS |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_4:-20647561 | Msa0673850:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_4:+20647207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_4:20647573-20647592 | Msa0673850:CDS | 0.0% |
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_4:20647573-20647592 | Msa0673850:CDS | 0.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_4:20646748-20646767 | None:intergenic | 15.0% |
| !! | ACAACTACTAATTAAAATTA+AGG | + | chr4_4:20647937-20647956 | None:intergenic | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_4:20646748-20646767 | None:intergenic | 15.0% |
| !! | ACAACTACTAATTAAAATTA+AGG | + | chr4_4:20647937-20647956 | None:intergenic | 15.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | + | chr4_4:20646332-20646351 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | - | chr4_4:20646781-20646800 | Msa0673850:intron | 20.0% |
| !! | CATATATGGACAAAATAAAA+TGG | + | chr4_4:20647106-20647125 | None:intergenic | 20.0% |
| !! | TATGAAATCATGAACATATA+TGG | + | chr4_4:20647120-20647139 | None:intergenic | 20.0% |
| !!! | TATCAAGAAATTTTTACTTG+TGG | - | chr4_4:20647151-20647170 | Msa0673850:intron | 20.0% |
| !!! | ATCAAGAAATTTTTACTTGT+GGG | - | chr4_4:20647152-20647171 | Msa0673850:intron | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | + | chr4_4:20646332-20646351 | None:intergenic | 20.0% |
| !!! | ATAAACTTAGTTTGTTTCAA+GGG | - | chr4_4:20646781-20646800 | Msa0673850:intron | 20.0% |
| !! | CATATATGGACAAAATAAAA+TGG | + | chr4_4:20647106-20647125 | None:intergenic | 20.0% |
| !! | TATGAAATCATGAACATATA+TGG | + | chr4_4:20647120-20647139 | None:intergenic | 20.0% |
| !!! | TATCAAGAAATTTTTACTTG+TGG | - | chr4_4:20647151-20647170 | Msa0673850:intron | 20.0% |
| !!! | ATCAAGAAATTTTTACTTGT+GGG | - | chr4_4:20647152-20647171 | Msa0673850:intron | 20.0% |
| !!! | ATACAGTTTTATAAGTTCCA+TGG | - | chr4_4:20646347-20646366 | Msa0673850:CDS | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | + | chr4_4:20646471-20646490 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | - | chr4_4:20646472-20646491 | Msa0673850:CDS | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | - | chr4_4:20646780-20646799 | Msa0673850:intron | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | - | chr4_4:20646782-20646801 | Msa0673850:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_4:20646993-20647012 | Msa0673850:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_4:20647123-20647142 | Msa0673850:intron | 25.0% |
| !! | TCAAGAAATTTTTACTTGTG+GGG | - | chr4_4:20647153-20647172 | Msa0673850:intron | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_4:20647830-20647849 | Msa0673850:CDS | 25.0% |
| !!! | ATACAGTTTTATAAGTTCCA+TGG | - | chr4_4:20646347-20646366 | Msa0673850:CDS | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | + | chr4_4:20646471-20646490 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | - | chr4_4:20646472-20646491 | Msa0673850:CDS | 25.0% |
| !!! | GATAAACTTAGTTTGTTTCA+AGG | - | chr4_4:20646780-20646799 | Msa0673850:intron | 25.0% |
| !!! | TAAACTTAGTTTGTTTCAAG+GGG | - | chr4_4:20646782-20646801 | Msa0673850:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_4:20646993-20647012 | Msa0673850:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_4:20647123-20647142 | Msa0673850:intron | 25.0% |
| !! | TCAAGAAATTTTTACTTGTG+GGG | - | chr4_4:20647153-20647172 | Msa0673850:intron | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_4:20647830-20647849 | Msa0673850:CDS | 25.0% |
| TGTTGTTATAACCTAAGCTT+TGG | + | chr4_4:20646255-20646274 | None:intergenic | 30.0% | |
| GCTTAGGTTATAACAACAAA+TGG | - | chr4_4:20646257-20646276 | Msa0673850:three_prime_UTR | 30.0% | |
| AGGATAAAGTTTCAAAGATG+AGG | + | chr4_4:20646451-20646470 | None:intergenic | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_4:20646996-20647015 | Msa0673850:intron | 30.0% | |
| CTTAACTCAAAAAGTTACGA+CGG | + | chr4_4:20647502-20647521 | None:intergenic | 30.0% | |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_4:20647617-20647636 | Msa0673850:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_4:20647618-20647637 | Msa0673850:CDS | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | - | chr4_4:20647691-20647710 | Msa0673850:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | - | chr4_4:20647692-20647711 | Msa0673850:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | - | chr4_4:20647700-20647719 | Msa0673850:CDS | 30.0% | |
| TGTTGTTATAACCTAAGCTT+TGG | + | chr4_4:20646255-20646274 | None:intergenic | 30.0% | |
| GCTTAGGTTATAACAACAAA+TGG | - | chr4_4:20646257-20646276 | Msa0673850:three_prime_UTR | 30.0% | |
| AGGATAAAGTTTCAAAGATG+AGG | + | chr4_4:20646451-20646470 | None:intergenic | 30.0% | |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_4:20646996-20647015 | Msa0673850:intron | 30.0% | |
| CTTAACTCAAAAAGTTACGA+CGG | + | chr4_4:20647502-20647521 | None:intergenic | 30.0% | |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_4:20647617-20647636 | Msa0673850:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_4:20647618-20647637 | Msa0673850:CDS | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | - | chr4_4:20647691-20647710 | Msa0673850:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | - | chr4_4:20647692-20647711 | Msa0673850:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | - | chr4_4:20647700-20647719 | Msa0673850:CDS | 30.0% | |
| ATAAGACATCACCAAAGCTT+AGG | - | chr4_4:20646241-20646260 | Msa0673850:three_prime_UTR | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_4:20646273-20646292 | Msa0673850:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_4:20646441-20646460 | None:intergenic | 35.0% | |
| TGGTTTCTTCGCAAAAACAA+CGG | - | chr4_4:20646518-20646537 | Msa0673850:CDS | 35.0% | |
| !! | ATGTTTTGCACCACTTGTTA+AGG | - | chr4_4:20646623-20646642 | Msa0673850:intron | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | - | chr4_4:20646624-20646643 | Msa0673850:intron | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | + | chr4_4:20646636-20646655 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | - | chr4_4:20646647-20646666 | Msa0673850:intron | 35.0% | |
| AAAACTGTGCATTTGATGTG+AGG | + | chr4_4:20646939-20646958 | None:intergenic | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_4:20647633-20647652 | Msa0673850:CDS | 35.0% |
| ! | AACAGCAAAGAAGCTATTTC+AGG | - | chr4_4:20647685-20647704 | Msa0673850:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_4:20647805-20647824 | Msa0673850:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_4:20647853-20647872 | Msa0673850:CDS | 35.0% | |
| TACAAGATTACTCCAGTATG+TGG | - | chr4_4:20647886-20647905 | Msa0673850:CDS | 35.0% | |
| ATAAGACATCACCAAAGCTT+AGG | - | chr4_4:20646241-20646260 | Msa0673850:three_prime_UTR | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_4:20646273-20646292 | Msa0673850:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_4:20646441-20646460 | None:intergenic | 35.0% | |
| TGGTTTCTTCGCAAAAACAA+CGG | - | chr4_4:20646518-20646537 | Msa0673850:CDS | 35.0% | |
| !! | ATGTTTTGCACCACTTGTTA+AGG | - | chr4_4:20646623-20646642 | Msa0673850:intron | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | - | chr4_4:20646624-20646643 | Msa0673850:intron | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | + | chr4_4:20646636-20646655 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | - | chr4_4:20646647-20646666 | Msa0673850:intron | 35.0% | |
| AAAACTGTGCATTTGATGTG+AGG | + | chr4_4:20646939-20646958 | None:intergenic | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_4:20647633-20647652 | Msa0673850:CDS | 35.0% |
| ! | AACAGCAAAGAAGCTATTTC+AGG | - | chr4_4:20647685-20647704 | Msa0673850:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_4:20647805-20647824 | Msa0673850:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_4:20647853-20647872 | Msa0673850:CDS | 35.0% | |
| TACAAGATTACTCCAGTATG+TGG | - | chr4_4:20647886-20647905 | Msa0673850:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_4:20646399-20646418 | Msa0673850:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_4:20646413-20646432 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_4:20646429-20646448 | None:intergenic | 40.0% | |
| TTCGCAAAAACAACGGTGAA+AGG | - | chr4_4:20646525-20646544 | Msa0673850:CDS | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_4:20646655-20646674 | Msa0673850:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_4:20646685-20646704 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_4:20646683-20646702 | Msa0673850:intron | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | - | chr4_4:20646716-20646735 | Msa0673850:intron | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | - | chr4_4:20646717-20646736 | Msa0673850:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_4:20646824-20646843 | Msa0673850:intron | 40.0% |
| ! | TTTGGAGTCTTTGGTTGATG+TGG | - | chr4_4:20646869-20646888 | Msa0673850:intron | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | - | chr4_4:20646950-20646969 | Msa0673850:intron | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | - | chr4_4:20646956-20646975 | Msa0673850:intron | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_4:20647044-20647063 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_4:20647043-20647062 | Msa0673850:intron | 40.0% |
| ! | ATTGAGGGCACATACATAGA+GGG | + | chr4_4:20647441-20647460 | None:intergenic | 40.0% |
| ATCCAGTCACATGTGATTGA+GGG | + | chr4_4:20647456-20647475 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_4:20647632-20647651 | Msa0673850:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_4:20647782-20647801 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_4:20647783-20647802 | Msa0673850:CDS | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_4:20646399-20646418 | Msa0673850:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_4:20646413-20646432 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_4:20646429-20646448 | None:intergenic | 40.0% | |
| TTCGCAAAAACAACGGTGAA+AGG | - | chr4_4:20646525-20646544 | Msa0673850:CDS | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_4:20646655-20646674 | Msa0673850:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_4:20646685-20646704 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_4:20646683-20646702 | Msa0673850:intron | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | - | chr4_4:20646716-20646735 | Msa0673850:intron | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | - | chr4_4:20646717-20646736 | Msa0673850:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_4:20646824-20646843 | Msa0673850:intron | 40.0% |
| ! | TTTGGAGTCTTTGGTTGATG+TGG | - | chr4_4:20646869-20646888 | Msa0673850:intron | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | - | chr4_4:20646950-20646969 | Msa0673850:intron | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | - | chr4_4:20646956-20646975 | Msa0673850:intron | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_4:20647044-20647063 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_4:20647043-20647062 | Msa0673850:intron | 40.0% |
| ! | ATTGAGGGCACATACATAGA+GGG | + | chr4_4:20647441-20647460 | None:intergenic | 40.0% |
| ATCCAGTCACATGTGATTGA+GGG | + | chr4_4:20647456-20647475 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_4:20647632-20647651 | Msa0673850:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_4:20647782-20647801 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_4:20647783-20647802 | Msa0673850:CDS | 40.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | - | chr4_4:20646372-20646391 | Msa0673850:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_4:20646488-20646507 | None:intergenic | 45.0% | |
| ACAACGGTGAAAGGCAAAGA+AGG | - | chr4_4:20646534-20646553 | Msa0673850:CDS | 45.0% | |
| CAACGGTGAAAGGCAAAGAA+GGG | - | chr4_4:20646535-20646554 | Msa0673850:CDS | 45.0% | |
| AACGGTGAAAGGCAAAGAAG+GGG | - | chr4_4:20646536-20646555 | Msa0673850:CDS | 45.0% | |
| !! | CTGACGAGAAGCTTTGAAAG+AGG | + | chr4_4:20646591-20646610 | None:intergenic | 45.0% |
| CTTTCAAAGCTTCTCGTCAG+TGG | - | chr4_4:20646591-20646610 | Msa0673850:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_4:20646660-20646679 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_4:20646673-20646692 | Msa0673850:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_4:20646689-20646708 | Msa0673850:intron | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | - | chr4_4:20646788-20646807 | Msa0673850:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_4:20646808-20646827 | None:intergenic | 45.0% | |
| GATTGCAGCCATGTGTTTGA+GGG | - | chr4_4:20646846-20646865 | Msa0673850:intron | 45.0% | |
| ACTCCAAACCCTCAAACACA+TGG | + | chr4_4:20646857-20646876 | None:intergenic | 45.0% | |
| ! | GTTTGAGGGTTTGGAGTCTT+TGG | - | chr4_4:20646860-20646879 | Msa0673850:intron | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | + | chr4_4:20646969-20646988 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | - | chr4_4:20646969-20646988 | Msa0673850:intron | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_4:20647040-20647059 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_4:20647041-20647060 | None:intergenic | 45.0% | |
| ! | GATTGAGGGCACATACATAG+AGG | + | chr4_4:20647442-20647461 | None:intergenic | 45.0% |
| GATCCAGTCACATGTGATTG+AGG | + | chr4_4:20647457-20647476 | None:intergenic | 45.0% | |
| AGAGACTTGAAGCCACATAC+TGG | + | chr4_4:20647901-20647920 | None:intergenic | 45.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | - | chr4_4:20646372-20646391 | Msa0673850:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_4:20646488-20646507 | None:intergenic | 45.0% | |
| ACAACGGTGAAAGGCAAAGA+AGG | - | chr4_4:20646534-20646553 | Msa0673850:CDS | 45.0% | |
| CAACGGTGAAAGGCAAAGAA+GGG | - | chr4_4:20646535-20646554 | Msa0673850:CDS | 45.0% | |
| AACGGTGAAAGGCAAAGAAG+GGG | - | chr4_4:20646536-20646555 | Msa0673850:CDS | 45.0% | |
| !! | CTGACGAGAAGCTTTGAAAG+AGG | + | chr4_4:20646591-20646610 | None:intergenic | 45.0% |
| CTTTCAAAGCTTCTCGTCAG+TGG | - | chr4_4:20646591-20646610 | Msa0673850:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_4:20646660-20646679 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_4:20646673-20646692 | Msa0673850:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_4:20646689-20646708 | Msa0673850:intron | 45.0% |
| !! | TAGTTTGTTTCAAGGGGCCA+TGG | - | chr4_4:20646788-20646807 | Msa0673850:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_4:20646808-20646827 | None:intergenic | 45.0% | |
| GATTGCAGCCATGTGTTTGA+GGG | - | chr4_4:20646846-20646865 | Msa0673850:intron | 45.0% | |
| ACTCCAAACCCTCAAACACA+TGG | + | chr4_4:20646857-20646876 | None:intergenic | 45.0% | |
| ! | GTTTGAGGGTTTGGAGTCTT+TGG | - | chr4_4:20646860-20646879 | Msa0673850:intron | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | + | chr4_4:20646969-20646988 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | - | chr4_4:20646969-20646988 | Msa0673850:intron | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_4:20647040-20647059 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_4:20647041-20647060 | None:intergenic | 45.0% | |
| ! | GATTGAGGGCACATACATAG+AGG | + | chr4_4:20647442-20647461 | None:intergenic | 45.0% |
| GATCCAGTCACATGTGATTG+AGG | + | chr4_4:20647457-20647476 | None:intergenic | 45.0% | |
| AGAGACTTGAAGCCACATAC+TGG | + | chr4_4:20647901-20647920 | None:intergenic | 45.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | + | chr4_4:20646367-20646386 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | - | chr4_4:20646365-20646384 | Msa0673850:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | - | chr4_4:20646498-20646517 | Msa0673850:CDS | 50.0% |
| GGATTGCAGCCATGTGTTTG+AGG | - | chr4_4:20646845-20646864 | Msa0673850:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_4:20646851-20646870 | Msa0673850:intron | 50.0% | |
| ! | GAGTCTTTGGTTGATGTGGC+AGG | - | chr4_4:20646873-20646892 | Msa0673850:intron | 50.0% |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | - | chr4_4:20646876-20646895 | Msa0673850:intron | 50.0% |
| ! | CTTTGGTTGATGTGGCAGGT+GGG | - | chr4_4:20646877-20646896 | Msa0673850:intron | 50.0% |
| TGCCCTCAATCACATGTGAC+TGG | - | chr4_4:20647451-20647470 | Msa0673850:CDS | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | + | chr4_4:20646367-20646386 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | - | chr4_4:20646365-20646384 | Msa0673850:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | - | chr4_4:20646498-20646517 | Msa0673850:CDS | 50.0% |
| GGATTGCAGCCATGTGTTTG+AGG | - | chr4_4:20646845-20646864 | Msa0673850:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_4:20646851-20646870 | Msa0673850:intron | 50.0% | |
| ! | GAGTCTTTGGTTGATGTGGC+AGG | - | chr4_4:20646873-20646892 | Msa0673850:intron | 50.0% |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | - | chr4_4:20646876-20646895 | Msa0673850:intron | 50.0% |
| ! | CTTTGGTTGATGTGGCAGGT+GGG | - | chr4_4:20646877-20646896 | Msa0673850:intron | 50.0% |
| TGCCCTCAATCACATGTGAC+TGG | - | chr4_4:20647451-20647470 | Msa0673850:CDS | 50.0% | |
| GTTGATGTGGCAGGTGGGAC+TGG | - | chr4_4:20646882-20646901 | Msa0673850:intron | 60.0% | |
| GTTGATGTGGCAGGTGGGAC+TGG | - | chr4_4:20646882-20646901 | Msa0673850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 20646220 | 20648046 | 20646220 | ID=Msa0673850;Name=Msa0673850 |
| chr4_4 | mRNA | 20646220 | 20648046 | 20646220 | ID=Msa0673850-mRNA-1;Parent=Msa0673850;Name=Msa0673850-mRNA-1;_AED=0.24;_eAED=0.24;_QI=56|1|1|1|1|1|2|107|363 |
| chr4_4 | exon | 20646220 | 20646629 | 20646220 | ID=Msa0673850-mRNA-1:exon:5900;Parent=Msa0673850-mRNA-1 |
| chr4_4 | exon | 20647202 | 20648046 | 20647202 | ID=Msa0673850-mRNA-1:exon:5899;Parent=Msa0673850-mRNA-1 |
| chr4_4 | five_prime_UTR | 20647991 | 20648046 | 20647991 | ID=Msa0673850-mRNA-1:five_prime_utr;Parent=Msa0673850-mRNA-1 |
| chr4_4 | CDS | 20647202 | 20647990 | 20647202 | ID=Msa0673850-mRNA-1:cds;Parent=Msa0673850-mRNA-1 |
| chr4_4 | CDS | 20646327 | 20646629 | 20646327 | ID=Msa0673850-mRNA-1:cds;Parent=Msa0673850-mRNA-1 |
| chr4_4 | three_prime_UTR | 20646220 | 20646326 | 20646220 | ID=Msa0673850-mRNA-1:three_prime_utr;Parent=Msa0673850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
