Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595390 | XP_039689920.1 | 96.694 | 363 | 6 | 1 | 1 | 363 | 1 | 357 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595390 | sp|O24305|M3OM1_PEA | 77.961 | 363 | 77 | 2 | 1 | 363 | 1 | 360 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0209060 | Msa0595390 | 0.818678 | 1.729629e-52 | -8.615850e-47 |
| Msa0288540 | Msa0595390 | 0.816972 | 4.196979e-52 | -8.615850e-47 |
| Msa0326770 | Msa0595390 | 0.814360 | 1.602948e-51 | -8.615850e-47 |
| Msa0539590 | Msa0595390 | 0.802441 | 5.601180e-49 | -8.615850e-47 |
| Msa0539620 | Msa0595390 | 0.911057 | 9.354163e-83 | -8.615850e-47 |
| Msa0539630 | Msa0595390 | 0.831659 | 1.472705e-55 | -8.615850e-47 |
| Msa0595390 | Msa0673850 | 0.807900 | 4.031800e-50 | -8.615850e-47 |
| Msa0595390 | Msa0946010 | 0.834169 | 3.501962e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595390 | MtrunA17_Chr4g0014591 | 96.419 | 363 | 7 | 1 | 1 | 363 | 1 | 357 | 0.0 | 712 |
| Msa0595390 | MtrunA17_Chr4g0014661 | 95.868 | 363 | 9 | 1 | 1 | 363 | 1 | 357 | 0.0 | 710 |
| Msa0595390 | MtrunA17_Chr4g0046361 | 77.135 | 363 | 81 | 1 | 1 | 363 | 1 | 361 | 0.0 | 580 |
| Msa0595390 | MtrunA17_Chr4g0014681 | 79.396 | 364 | 73 | 2 | 1 | 363 | 1 | 363 | 0.0 | 576 |
| Msa0595390 | MtrunA17_Chr4g0014561 | 78.846 | 364 | 75 | 2 | 1 | 363 | 1 | 363 | 0.0 | 572 |
| Msa0595390 | MtrunA17_Chr4g0014641 | 77.198 | 364 | 81 | 2 | 1 | 363 | 1 | 363 | 0.0 | 563 |
| Msa0595390 | MtrunA17_Chr4g0046341 | 77.198 | 364 | 82 | 1 | 1 | 363 | 1 | 364 | 0.0 | 546 |
| Msa0595390 | MtrunA17_Chr4g0014601 | 95.113 | 266 | 7 | 1 | 1 | 266 | 1 | 260 | 0.0 | 512 |
| Msa0595390 | MtrunA17_Chr7g0219141 | 48.603 | 358 | 178 | 4 | 6 | 363 | 6 | 357 | 8.26e-121 | 353 |
| Msa0595390 | MtrunA17_Chr1g0188391 | 50.000 | 362 | 173 | 6 | 5 | 363 | 5 | 361 | 1.76e-120 | 352 |
| Msa0595390 | MtrunA17_Chr7g0219161 | 49.133 | 346 | 170 | 4 | 6 | 351 | 6 | 345 | 4.03e-118 | 346 |
| Msa0595390 | MtrunA17_Chr7g0223231 | 46.629 | 356 | 178 | 4 | 6 | 361 | 5 | 348 | 1.06e-114 | 337 |
| Msa0595390 | MtrunA17_Chr5g0432251 | 47.606 | 355 | 178 | 5 | 11 | 363 | 11 | 359 | 1.14e-114 | 337 |
| Msa0595390 | MtrunA17_Chr5g0432301 | 46.027 | 365 | 186 | 6 | 3 | 362 | 1 | 359 | 3.33e-113 | 333 |
| Msa0595390 | MtrunA17_Chr5g0432241 | 45.856 | 362 | 188 | 5 | 4 | 363 | 5 | 360 | 1.13e-109 | 325 |
| Msa0595390 | MtrunA17_Chr4g0046531 | 49.036 | 363 | 176 | 4 | 1 | 362 | 1 | 355 | 4.35e-109 | 335 |
| Msa0595390 | MtrunA17_Chr4g0046531 | 48.077 | 364 | 180 | 4 | 1 | 363 | 363 | 718 | 6.50e-107 | 329 |
| Msa0595390 | MtrunA17_Chr7g0223241 | 45.787 | 356 | 181 | 4 | 6 | 361 | 5 | 348 | 7.27e-108 | 320 |
| Msa0595390 | MtrunA17_Chr5g0432261 | 45.326 | 353 | 161 | 3 | 11 | 363 | 7 | 327 | 1.17e-104 | 310 |
| Msa0595390 | MtrunA17_Chr5g0432211 | 43.944 | 355 | 177 | 6 | 11 | 363 | 11 | 345 | 2.96e-103 | 308 |
| Msa0595390 | MtrunA17_Chr4g0040621 | 43.785 | 354 | 190 | 3 | 11 | 363 | 24 | 369 | 9.55e-101 | 302 |
| Msa0595390 | MtrunA17_Chr1g0188371 | 46.450 | 338 | 172 | 5 | 9 | 343 | 9 | 340 | 2.36e-97 | 294 |
| Msa0595390 | MtrunA17_Chr4g0022021 | 33.151 | 365 | 230 | 8 | 3 | 363 | 14 | 368 | 9.02e-56 | 186 |
| Msa0595390 | MtrunA17_Chr4g0021981 | 32.877 | 365 | 231 | 8 | 3 | 363 | 14 | 368 | 1.08e-54 | 184 |
| Msa0595390 | MtrunA17_Chr3g0121301 | 35.465 | 344 | 205 | 10 | 20 | 359 | 27 | 357 | 1.10e-54 | 183 |
| Msa0595390 | MtrunA17_Chr7g0219171 | 57.463 | 134 | 56 | 1 | 230 | 363 | 116 | 248 | 7.54e-49 | 165 |
| Msa0595390 | MtrunA17_Chr7g0219171 | 43.590 | 117 | 59 | 1 | 6 | 122 | 6 | 115 | 9.04e-27 | 106 |
| Msa0595390 | MtrunA17_Chr4g0014611 | 96.000 | 100 | 4 | 0 | 264 | 363 | 8 | 107 | 2.80e-45 | 150 |
| Msa0595390 | MtrunA17_Chr5g0448091 | 32.153 | 339 | 211 | 12 | 29 | 359 | 31 | 358 | 7.08e-43 | 152 |
| Msa0595390 | MtrunA17_Chr4g0014671 | 96.190 | 105 | 4 | 0 | 259 | 363 | 30 | 134 | 7.27e-42 | 143 |
| Msa0595390 | MtrunA17_Chr3g0128011 | 32.113 | 355 | 205 | 12 | 9 | 349 | 71 | 403 | 1.05e-39 | 145 |
| Msa0595390 | MtrunA17_Chr1g0200491 | 30.114 | 352 | 228 | 8 | 5 | 349 | 17 | 357 | 1.75e-39 | 144 |
| Msa0595390 | MtrunA17_Chr8g0367501 | 29.477 | 363 | 242 | 9 | 5 | 361 | 6 | 360 | 1.17e-38 | 142 |
| Msa0595390 | MtrunA17_Chr7g0276401 | 30.178 | 338 | 220 | 10 | 26 | 358 | 42 | 368 | 7.35e-38 | 139 |
| Msa0595390 | MtrunA17_Chr1g0163611 | 28.736 | 348 | 232 | 8 | 24 | 362 | 29 | 369 | 1.82e-37 | 138 |
| Msa0595390 | MtrunA17_Chr1g0163601 | 29.641 | 334 | 221 | 7 | 24 | 350 | 29 | 355 | 2.38e-37 | 138 |
| Msa0595390 | MtrunA17_Chr7g0218131 | 29.290 | 338 | 224 | 9 | 32 | 362 | 40 | 369 | 2.72e-37 | 137 |
| Msa0595390 | MtrunA17_Chr8g0367441 | 30.154 | 325 | 214 | 8 | 26 | 344 | 41 | 358 | 3.08e-37 | 137 |
| Msa0595390 | MtrunA17_Chr7g0276411 | 30.395 | 329 | 216 | 8 | 26 | 348 | 26 | 347 | 7.40e-37 | 136 |
| Msa0595390 | MtrunA17_Chr8g0367491 | 29.080 | 337 | 225 | 9 | 26 | 355 | 40 | 369 | 1.89e-36 | 135 |
| Msa0595390 | MtrunA17_Chr7g0218301 | 28.739 | 341 | 222 | 8 | 32 | 361 | 40 | 370 | 4.89e-36 | 134 |
| Msa0595390 | MtrunA17_Chr7g0218261 | 28.443 | 334 | 226 | 8 | 32 | 361 | 39 | 363 | 1.81e-35 | 133 |
| Msa0595390 | MtrunA17_Chr8g0367451 | 30.154 | 325 | 214 | 8 | 26 | 344 | 40 | 357 | 1.82e-35 | 133 |
| Msa0595390 | MtrunA17_Chr7g0218271 | 28.529 | 340 | 224 | 8 | 32 | 361 | 40 | 370 | 2.78e-35 | 132 |
| Msa0595390 | MtrunA17_Chr2g0314271 | 32.622 | 328 | 196 | 10 | 31 | 348 | 27 | 339 | 1.02e-34 | 130 |
| Msa0595390 | MtrunA17_Chr7g0218181 | 26.706 | 337 | 231 | 9 | 32 | 362 | 40 | 366 | 1.93e-34 | 130 |
| Msa0595390 | MtrunA17_Chr1g0163621 | 29.167 | 336 | 218 | 9 | 25 | 350 | 44 | 369 | 2.63e-34 | 130 |
| Msa0595390 | MtrunA17_Chr2g0307521 | 28.909 | 339 | 218 | 10 | 32 | 361 | 34 | 358 | 1.33e-33 | 127 |
| Msa0595390 | MtrunA17_Chr3g0085211 | 30.581 | 327 | 215 | 8 | 28 | 350 | 38 | 356 | 6.65e-33 | 126 |
| Msa0595390 | MtrunA17_Chr7g0218211 | 28.955 | 335 | 224 | 8 | 32 | 361 | 39 | 364 | 1.23e-32 | 125 |
| Msa0595390 | MtrunA17_Chr8g0345851 | 31.373 | 255 | 166 | 5 | 98 | 350 | 30 | 277 | 1.55e-31 | 120 |
| Msa0595390 | MtrunA17_Chr3g0085201 | 30.149 | 335 | 213 | 12 | 32 | 358 | 29 | 350 | 2.95e-30 | 118 |
| Msa0595390 | MtrunA17_Chr8g0367381 | 29.355 | 310 | 189 | 8 | 26 | 330 | 41 | 325 | 8.09e-30 | 117 |
| Msa0595390 | MtrunA17_Chr4g0014621 | 96.970 | 66 | 2 | 0 | 298 | 363 | 197 | 262 | 5.42e-29 | 113 |
| Msa0595390 | MtrunA17_Chr3g0130011 | 26.724 | 348 | 233 | 11 | 23 | 362 | 24 | 357 | 5.76e-26 | 107 |
| Msa0595390 | MtrunA17_Chr3g0130061 | 26.347 | 334 | 224 | 11 | 23 | 348 | 24 | 343 | 1.23e-24 | 103 |
| Msa0595390 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 250 | 355 | 1 | 105 | 5.47e-18 | 79.0 |
| Msa0595390 | MtrunA17_Chr6g0482291 | 28.931 | 159 | 101 | 3 | 191 | 348 | 14 | 161 | 4.73e-16 | 75.5 |
| Msa0595390 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 320 | 363 | 1 | 44 | 3.02e-13 | 63.5 |
| Msa0595390 | MtrunA17_Chr4g0011691 | 37.255 | 102 | 54 | 3 | 6 | 107 | 16 | 107 | 7.17e-13 | 67.8 |
| Msa0595390 | MtrunA17_Chr4g0011691 | 39.583 | 96 | 54 | 3 | 265 | 359 | 140 | 232 | 1.88e-11 | 63.5 |
| Msa0595390 | MtrunA17_Chr8g0367401 | 33.028 | 109 | 71 | 1 | 155 | 263 | 4 | 110 | 1.09e-12 | 65.1 |
| Msa0595390 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 234 | 348 | 6 | 119 | 7.15e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595390 | AT4G35150.1 | 31.564 | 358 | 185 | 10 | 16 | 362 | 15 | 323 | 1.30e-44 | 156 |
| Msa0595390 | AT4G35160.1 | 33.242 | 364 | 214 | 12 | 16 | 362 | 29 | 380 | 3.66e-43 | 154 |
| Msa0595390 | AT5G54160.1 | 31.638 | 354 | 222 | 9 | 8 | 350 | 4 | 348 | 8.61e-43 | 152 |
| Msa0595390 | AT1G77520.1 | 31.686 | 344 | 216 | 10 | 31 | 362 | 44 | 380 | 8.16e-39 | 142 |
| Msa0595390 | AT3G53140.1 | 30.571 | 350 | 203 | 10 | 31 | 360 | 27 | 356 | 6.81e-35 | 131 |
| Msa0595390 | AT5G53810.1 | 31.700 | 347 | 217 | 9 | 29 | 362 | 38 | 377 | 9.01e-35 | 131 |
| Msa0595390 | AT1G51990.2 | 31.471 | 340 | 215 | 11 | 33 | 363 | 32 | 362 | 2.97e-34 | 130 |
| Msa0595390 | AT1G33030.1 | 29.518 | 332 | 215 | 10 | 31 | 353 | 21 | 342 | 3.12e-34 | 129 |
| Msa0595390 | AT1G51990.1 | 31.471 | 340 | 215 | 11 | 33 | 363 | 32 | 362 | 3.51e-33 | 127 |
| Msa0595390 | AT1G63140.2 | 29.167 | 360 | 231 | 12 | 9 | 353 | 19 | 369 | 8.38e-32 | 123 |
| Msa0595390 | AT1G63140.4 | 29.167 | 360 | 231 | 12 | 9 | 353 | 39 | 389 | 1.02e-31 | 124 |
| Msa0595390 | AT1G77530.1 | 31.105 | 344 | 218 | 9 | 31 | 362 | 44 | 380 | 1.18e-30 | 120 |
| Msa0595390 | AT1G76790.1 | 27.100 | 369 | 223 | 13 | 7 | 355 | 9 | 351 | 1.50e-26 | 108 |
| Msa0595390 | AT1G62900.1 | 33.880 | 183 | 114 | 4 | 173 | 353 | 16 | 193 | 4.55e-24 | 98.6 |
| Msa0595390 | AT1G21130.1 | 26.727 | 333 | 215 | 10 | 31 | 348 | 40 | 358 | 1.81e-21 | 94.7 |
| Msa0595390 | AT1G21100.1 | 26.567 | 335 | 217 | 10 | 31 | 350 | 40 | 360 | 4.77e-21 | 93.6 |
| Msa0595390 | AT1G21110.1 | 25.758 | 330 | 216 | 10 | 31 | 345 | 40 | 355 | 1.08e-20 | 92.8 |
| Msa0595390 | AT1G21120.1 | 26.126 | 333 | 217 | 10 | 31 | 348 | 40 | 358 | 3.13e-20 | 91.3 |
| Msa0595390 | AT1G21120.2 | 25.970 | 335 | 219 | 10 | 31 | 350 | 88 | 408 | 3.95e-20 | 91.7 |
| Msa0595390 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 172 | 362 | 43 | 233 | 4.82e-20 | 88.2 |
| Msa0595390 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 172 | 362 | 143 | 333 | 9.06e-20 | 89.4 |
| Msa0595390 | AT5G37170.3 | 31.214 | 173 | 110 | 5 | 194 | 360 | 14 | 183 | 3.31e-19 | 84.7 |
| Msa0595390 | AT1G63140.1 | 27.239 | 268 | 178 | 8 | 9 | 263 | 39 | 302 | 1.50e-14 | 73.9 |
| Msa0595390 | AT1G33030.2 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 1.15e-12 | 67.8 |
| Msa0595390 | AT1G33030.3 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 2.86e-12 | 67.0 |
Find 74 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.173388 | 4_2:+24450446 | None:intergenic |
| ACTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4_2:+24448830 | None:intergenic |
| AACAGTAAAGAAGCTATTTC+AGG | 0.249373 | 4_2:-24448813 | Msa0595390:CDS |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_2:+24450337 | None:intergenic |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4_2:-24449924 | Msa0595390:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4_2:-24449915 | Msa0595390:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_2:+24450093 | None:intergenic |
| TTGGGAAATTCATGTTTCAT+AGG | 0.306052 | 4_2:+24448464 | None:intergenic |
| CTAAAGTTAGTGTCCTATAT+AGG | 0.347448 | 4_2:-24450303 | Msa0595390:CDS |
| TATAGGACACTAACTTTAGA+AGG | 0.352601 | 4_2:+24450307 | None:intergenic |
| GTTGATGTGGCAGGTGGAAC+TGG | 0.385377 | 4_2:-24449893 | Msa0595390:CDS |
| ACTAACAAGTGGTGCAAAAC+AGG | 0.393012 | 4_2:+24450153 | None:intergenic |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_2:+24450184 | None:intergenic |
| AAGAAAGAGAAAAGAAAGAA+TGG | 0.396191 | 4_2:-24448668 | Msa0595390:CDS |
| GAGAGACTTGAAGCCGCATA+TGG | 0.397843 | 4_2:+24448599 | None:intergenic |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_2:+24450365 | None:intergenic |
| AGTTTAATCTATAAAACAAA+TGG | 0.421106 | 4_2:-24450518 | Msa0595390:exon |
| CAGGTTGTGGCTAACTTATC+TGG | 0.424554 | 4_2:-24449806 | Msa0595390:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_2:-24448693 | Msa0595390:CDS |
| GATAAACTTAGCTTGTTTCA+AGG | 0.437048 | 4_2:-24449995 | Msa0595390:CDS |
| GCAACAACTAATTAAAATCA+AGG | 0.441531 | 4_2:+24448564 | None:intergenic |
| GCTAATTCAGGAACAGTCAT+AGG | 0.442962 | 4_2:+24450349 | None:intergenic |
| GCACTTTATGAAAGTGCAAT+GGG | 0.443790 | 4_2:-24450058 | Msa0595390:CDS |
| AATGTTCAAGCTTGCTCTCA+AGG | 0.450410 | 4_2:-24449951 | Msa0595390:CDS |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_2:-24450102 | Msa0595390:CDS |
| GATTGCAGCCATGTGTTTGA+GGG | 0.455193 | 4_2:-24449929 | Msa0595390:CDS |
| ACAACGGTGAAAGGCAAAGA+AGG | 0.456389 | 4_2:-24450241 | Msa0595390:CDS |
| ACTCAAAATTTGAACTTTGT+TGG | 0.456655 | 4_2:-24449782 | Msa0595390:CDS |
| AGTGCTCCATCCATGTTCTC+TGG | 0.459421 | 4_2:-24450128 | Msa0595390:CDS |
| CAAAATTTGAACTTTGTTGG+TGG | 0.461431 | 4_2:-24449779 | Msa0595390:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_2:+24450290 | None:intergenic |
| ATAAACTTAGCTTGTTTCAA+GGG | 0.472913 | 4_2:-24449994 | Msa0595390:CDS |
| GGATTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_2:-24449930 | Msa0595390:CDS |
| AAGAAGCTATTTCAGGGAAA+GGG | 0.498374 | 4_2:-24448806 | Msa0595390:CDS |
| GAATCTTTGGTTGATGTGGC+AGG | 0.499173 | 4_2:-24449902 | Msa0595390:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_2:-24450120 | Msa0595390:CDS |
| TTTAGATCAATCACAGGTTG+TGG | 0.504106 | 4_2:-24449819 | Msa0595390:CDS |
| CTCAAATCAGCTGTGGAACT+AGG | 0.506689 | 4_2:-24450403 | Msa0595390:CDS |
| AAAGAAGCTATTTCAGGGAA+AGG | 0.517368 | 4_2:-24448807 | Msa0595390:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 4_2:+24450411 | None:intergenic |
| ACAGTAAAGAAGCTATTTCA+GGG | 0.521168 | 4_2:-24448812 | Msa0595390:CDS |
| TTGCGCTTGCTAACACATGA+TGG | 0.524871 | 4_2:-24450277 | Msa0595390:CDS |
| CAACGGTGAAAGGCAAAGAA+GGG | 0.548081 | 4_2:-24450240 | Msa0595390:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_2:-24450086 | Msa0595390:CDS |
| TTTGGAATCTTTGGTTGATG+TGG | 0.555368 | 4_2:-24449906 | Msa0595390:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.555834 | 4_2:-24450502 | Msa0595390:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_2:+24449734 | None:intergenic |
| AGCACTTTATGAAAGTGCAA+TGG | 0.570154 | 4_2:-24450059 | Msa0595390:CDS |
| AGAGACTTGAAGCCGCATAT+GGG | 0.571433 | 4_2:+24448600 | None:intergenic |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4_2:-24450428 | Msa0595390:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_2:-24448715 | Msa0595390:CDS |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_2:-24450184 | Msa0595390:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_2:+24450118 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.594995 | 4_2:+24449970 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_2:+24448719 | None:intergenic |
| TAGCTTGTTTCAAGGGGCCA+TGG | 0.600696 | 4_2:-24449987 | Msa0595390:CDS |
| ACATATCCAGAGAACATGGA+TGG | 0.604347 | 4_2:+24450122 | None:intergenic |
| TAAACTTAGCTTGTTTCAAG+GGG | 0.605007 | 4_2:-24449993 | Msa0595390:CDS |
| AAAACAGTGCATTTGATGTG+AGG | 0.606781 | 4_2:+24449839 | None:intergenic |
| AGGATGAAGTTTCAAAGATG+AGG | 0.607728 | 4_2:+24450327 | None:intergenic |
| TCTTTGGTTGATGTGGCAGG+TGG | 0.622986 | 4_2:-24449899 | Msa0595390:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_2:+24449737 | None:intergenic |
| TACAAGATTACTCCCATATG+CGG | 0.624719 | 4_2:-24448612 | Msa0595390:CDS |
| GTAGATGCAATCCACAAACA+TGG | 0.627357 | 4_2:-24450376 | Msa0595390:CDS |
| ACTTTATGAAAGTGCAATGG+GGG | 0.627971 | 4_2:-24450056 | Msa0595390:CDS |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 4_2:-24450410 | Msa0595390:CDS |
| AACGGTGAAAGGCAAAGAAG+GGG | 0.637209 | 4_2:-24450239 | Msa0595390:CDS |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4_2:+24449921 | None:intergenic |
| CACTTTATGAAAGTGCAATG+GGG | 0.650114 | 4_2:-24450057 | Msa0595390:CDS |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_2:-24448645 | Msa0595390:CDS |
| TGGAGCACTCCACTAACAAG+TGG | 0.666600 | 4_2:+24450142 | None:intergenic |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_2:-24450092 | Msa0595390:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_2:+24449738 | None:intergenic |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_2:+24450187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_2:24450093-24450112 | Msa0595390:CDS | 0.0% |
| !!! | ATAATATTATTTTAATTTAT+TGG | - | chr4_2:24450093-24450112 | Msa0595390:CDS | 0.0% |
| !! | AAAATTCATATTTAATTCAT+TGG | + | chr4_2:24449786-24449805 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr4_2:24449794-24449813 | Msa0595390:CDS | 10.0% |
| !! | ATTTCATTAAAAAAATATGA+AGG | - | chr4_2:24449911-24449930 | Msa0595390:CDS | 10.0% |
| !!! | TTTTACAATTTTATTTCTTT+GGG | + | chr4_2:24450074-24450093 | None:intergenic | 10.0% |
| !!! | ATTTTACAATTTTATTTCTT+TGG | + | chr4_2:24450075-24450094 | None:intergenic | 10.0% |
| !! | AAAATTCATATTTAATTCAT+TGG | + | chr4_2:24449786-24449805 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr4_2:24449794-24449813 | Msa0595390:CDS | 10.0% |
| !! | ATTTCATTAAAAAAATATGA+AGG | - | chr4_2:24449911-24449930 | Msa0595390:CDS | 10.0% |
| !!! | TTTTACAATTTTATTTCTTT+GGG | + | chr4_2:24450074-24450093 | None:intergenic | 10.0% |
| !!! | ATTTTACAATTTTATTTCTT+TGG | + | chr4_2:24450075-24450094 | None:intergenic | 10.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | - | chr4_2:24448508-24448527 | Msa0595390:three_prime_UTR | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_2:24448999-24449018 | None:intergenic | 15.0% |
| !! | CATATATAGACAAAATAAAA+TGG | + | chr4_2:24449354-24449373 | None:intergenic | 15.0% |
| !! | AGATAAAAAAAAATTACATG+TGG | - | chr4_2:24449403-24449422 | Msa0595390:intron | 15.0% |
| !! | GATAAAAAAAAATTACATGT+GGG | - | chr4_2:24449404-24449423 | Msa0595390:intron | 15.0% |
| !! | ATAAAAAAAAATTACATGTG+GGG | - | chr4_2:24449405-24449424 | Msa0595390:intron | 15.0% |
| !! | AGTTTAATCTATAAAACAAA+TGG | - | chr4_2:24448508-24448527 | Msa0595390:three_prime_UTR | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | + | chr4_2:24448999-24449018 | None:intergenic | 15.0% |
| !! | CATATATAGACAAAATAAAA+TGG | + | chr4_2:24449354-24449373 | None:intergenic | 15.0% |
| !! | AGATAAAAAAAAATTACATG+TGG | - | chr4_2:24449403-24449422 | Msa0595390:intron | 15.0% |
| !! | GATAAAAAAAAATTACATGT+GGG | - | chr4_2:24449404-24449423 | Msa0595390:intron | 15.0% |
| !! | ATAAAAAAAAATTACATGTG+GGG | - | chr4_2:24449405-24449424 | Msa0595390:intron | 15.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | + | chr4_2:24448583-24448602 | None:intergenic | 20.0% |
| !!! | ACGTAAGAACAATTTTTATT+TGG | + | chr4_2:24449611-24449630 | None:intergenic | 20.0% |
| !! | ACAAATTTATATCTTTGATC+AGG | + | chr4_2:24449739-24449758 | None:intergenic | 20.0% |
| !! | TGATCAAAGATATAAATTTG+TGG | - | chr4_2:24449738-24449757 | Msa0595390:CDS | 20.0% |
| !!! | ATAAGTTTTGACTAAAACAT+AGG | - | chr4_2:24449940-24449959 | Msa0595390:CDS | 20.0% |
| !!! | TAAGTTTTGACTAAAACATA+GGG | - | chr4_2:24449941-24449960 | Msa0595390:CDS | 20.0% |
| !!! | TTCATAGATGAAAAATTTTG+AGG | - | chr4_2:24449970-24449989 | Msa0595390:CDS | 20.0% |
| !!! | TCATAGATGAAAAATTTTGA+GGG | - | chr4_2:24449971-24449990 | Msa0595390:CDS | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | + | chr4_2:24448583-24448602 | None:intergenic | 20.0% |
| !!! | ACGTAAGAACAATTTTTATT+TGG | + | chr4_2:24449611-24449630 | None:intergenic | 20.0% |
| !! | ACAAATTTATATCTTTGATC+AGG | + | chr4_2:24449739-24449758 | None:intergenic | 20.0% |
| !! | TGATCAAAGATATAAATTTG+TGG | - | chr4_2:24449738-24449757 | Msa0595390:CDS | 20.0% |
| !!! | ATAAGTTTTGACTAAAACAT+AGG | - | chr4_2:24449940-24449959 | Msa0595390:CDS | 20.0% |
| !!! | TAAGTTTTGACTAAAACATA+GGG | - | chr4_2:24449941-24449960 | Msa0595390:CDS | 20.0% |
| !!! | TTCATAGATGAAAAATTTTG+AGG | - | chr4_2:24449970-24449989 | Msa0595390:CDS | 20.0% |
| !!! | TCATAGATGAAAAATTTTGA+GGG | - | chr4_2:24449971-24449990 | Msa0595390:CDS | 20.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | - | chr4_2:24449032-24449051 | Msa0595390:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_2:24449244-24449263 | Msa0595390:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_2:24449371-24449390 | Msa0595390:intron | 25.0% |
| ! | AATCAAATGTTGGTACATTT+AGG | - | chr4_2:24450028-24450047 | Msa0595390:CDS | 25.0% |
| ! | ATCAAATGTTGGTACATTTA+GGG | - | chr4_2:24450029-24450048 | Msa0595390:CDS | 25.0% |
| ! | ACTGTTCTTCAATATCTTTA+AGG | + | chr4_2:24450199-24450218 | None:intergenic | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_2:24450358-24450377 | Msa0595390:CDS | 25.0% |
| ! | GCAACAACTAATTAAAATCA+AGG | + | chr4_2:24450465-24450484 | None:intergenic | 25.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | - | chr4_2:24449032-24449051 | Msa0595390:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | - | chr4_2:24449244-24449263 | Msa0595390:intron | 25.0% |
| ! | ATGTTCATGATTTCATAATC+AGG | - | chr4_2:24449371-24449390 | Msa0595390:intron | 25.0% |
| ! | AATCAAATGTTGGTACATTT+AGG | - | chr4_2:24450028-24450047 | Msa0595390:CDS | 25.0% |
| ! | ATCAAATGTTGGTACATTTA+GGG | - | chr4_2:24450029-24450048 | Msa0595390:CDS | 25.0% |
| ! | ACTGTTCTTCAATATCTTTA+AGG | + | chr4_2:24450199-24450218 | None:intergenic | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | - | chr4_2:24450358-24450377 | Msa0595390:CDS | 25.0% |
| ! | GCAACAACTAATTAAAATCA+AGG | + | chr4_2:24450465-24450484 | None:intergenic | 25.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | - | chr4_2:24448598-24448617 | Msa0595390:CDS | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | + | chr4_2:24448722-24448741 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | - | chr4_2:24448723-24448742 | Msa0595390:CDS | 30.0% | |
| !! | GATAAACTTAGCTTGTTTCA+AGG | - | chr4_2:24449031-24449050 | Msa0595390:intron | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | - | chr4_2:24449033-24449052 | Msa0595390:intron | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_2:24449247-24449266 | Msa0595390:intron | 30.0% | |
| !!! | TTGCTGATTTTTAACACTAC+CGG | - | chr4_2:24449664-24449683 | Msa0595390:intron | 30.0% |
| CATACATAGAGAGATATTTC+CGG | + | chr4_2:24449686-24449705 | None:intergenic | 30.0% | |
| TTTATATCTTTGATCAGGCA+CGG | + | chr4_2:24449734-24449753 | None:intergenic | 30.0% | |
| !! | AAGCCTAAGGAATATTTTAG+AGG | - | chr4_2:24449999-24450018 | Msa0595390:CDS | 30.0% |
| TCAAATGTTGGTACATTTAG+GGG | - | chr4_2:24450030-24450049 | Msa0595390:CDS | 30.0% | |
| ! | CTTTGGGTTAAATACGTAAA+TGG | + | chr4_2:24450058-24450077 | None:intergenic | 30.0% |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_2:24450145-24450164 | Msa0595390:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_2:24450146-24450165 | Msa0595390:CDS | 30.0% | |
| ! | AACAGTAAAGAAGCTATTTC+AGG | - | chr4_2:24450213-24450232 | Msa0595390:CDS | 30.0% |
| ! | ACAGTAAAGAAGCTATTTCA+GGG | - | chr4_2:24450214-24450233 | Msa0595390:CDS | 30.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | - | chr4_2:24448598-24448617 | Msa0595390:CDS | 30.0% |
| TATAGGACACTAACTTTAGA+AGG | + | chr4_2:24448722-24448741 | None:intergenic | 30.0% | |
| CTAAAGTTAGTGTCCTATAT+AGG | - | chr4_2:24448723-24448742 | Msa0595390:CDS | 30.0% | |
| !! | GATAAACTTAGCTTGTTTCA+AGG | - | chr4_2:24449031-24449050 | Msa0595390:intron | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | - | chr4_2:24449033-24449052 | Msa0595390:intron | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | - | chr4_2:24449247-24449266 | Msa0595390:intron | 30.0% | |
| !!! | TTGCTGATTTTTAACACTAC+CGG | - | chr4_2:24449664-24449683 | Msa0595390:intron | 30.0% |
| CATACATAGAGAGATATTTC+CGG | + | chr4_2:24449686-24449705 | None:intergenic | 30.0% | |
| TTTATATCTTTGATCAGGCA+CGG | + | chr4_2:24449734-24449753 | None:intergenic | 30.0% | |
| !! | AAGCCTAAGGAATATTTTAG+AGG | - | chr4_2:24449999-24450018 | Msa0595390:CDS | 30.0% |
| TCAAATGTTGGTACATTTAG+GGG | - | chr4_2:24450030-24450049 | Msa0595390:CDS | 30.0% | |
| ! | CTTTGGGTTAAATACGTAAA+TGG | + | chr4_2:24450058-24450077 | None:intergenic | 30.0% |
| ATCTCAAATGTCTTTCAAAG+TGG | - | chr4_2:24450145-24450164 | Msa0595390:CDS | 30.0% | |
| TCTCAAATGTCTTTCAAAGT+GGG | - | chr4_2:24450146-24450165 | Msa0595390:CDS | 30.0% | |
| ! | AACAGTAAAGAAGCTATTTC+AGG | - | chr4_2:24450213-24450232 | Msa0595390:CDS | 30.0% |
| ! | ACAGTAAAGAAGCTATTTCA+GGG | - | chr4_2:24450214-24450233 | Msa0595390:CDS | 30.0% |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_2:24448524-24448543 | Msa0595390:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_2:24448692-24448711 | None:intergenic | 35.0% | |
| AGGATGAAGTTTCAAAGATG+AGG | + | chr4_2:24448702-24448721 | None:intergenic | 35.0% | |
| TGGTTTCTTCGCAAAAACAA+CGG | - | chr4_2:24448769-24448788 | Msa0595390:CDS | 35.0% | |
| ! | AGCACTTTATGAAAGTGCAA+TGG | - | chr4_2:24448967-24448986 | Msa0595390:intron | 35.0% |
| ! | GCACTTTATGAAAGTGCAAT+GGG | - | chr4_2:24448968-24448987 | Msa0595390:intron | 35.0% |
| ! | CACTTTATGAAAGTGCAATG+GGG | - | chr4_2:24448969-24448988 | Msa0595390:intron | 35.0% |
| ! | ACTTTATGAAAGTGCAATGG+GGG | - | chr4_2:24448970-24448989 | Msa0595390:intron | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | - | chr4_2:24449120-24449139 | Msa0595390:intron | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | + | chr4_2:24449190-24449209 | None:intergenic | 35.0% | |
| !! | CACTGTTTTAGATCAATCAC+AGG | - | chr4_2:24449201-24449220 | Msa0595390:intron | 35.0% |
| TTTAGATCAATCACAGGTTG+TGG | - | chr4_2:24449207-24449226 | Msa0595390:intron | 35.0% | |
| !! | GTGCCTCTAAAATATTCCTT+AGG | + | chr4_2:24450005-24450024 | None:intergenic | 35.0% |
| ! | GAGGCACTAAAATCAAATGT+TGG | - | chr4_2:24450018-24450037 | Msa0595390:CDS | 35.0% |
| CAAATGTTGGTACATTTAGG+GGG | - | chr4_2:24450031-24450050 | Msa0595390:CDS | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_2:24450161-24450180 | Msa0595390:CDS | 35.0% |
| ! | AAAGAAGCTATTTCAGGGAA+AGG | - | chr4_2:24450219-24450238 | Msa0595390:CDS | 35.0% |
| ! | AAGAAGCTATTTCAGGGAAA+GGG | - | chr4_2:24450220-24450239 | Msa0595390:CDS | 35.0% |
| ATTTCAGGGAAAGGGAAAAA+AGG | - | chr4_2:24450228-24450247 | Msa0595390:CDS | 35.0% | |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_2:24450333-24450352 | Msa0595390:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_2:24450381-24450400 | Msa0595390:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | - | chr4_2:24450414-24450433 | Msa0595390:CDS | 35.0% | |
| ! | CAAATGGATTTCAAGAGCAA+TGG | - | chr4_2:24448524-24448543 | Msa0595390:three_prime_UTR | 35.0% |
| TTCAAAGATGAGGCTAATTC+AGG | + | chr4_2:24448692-24448711 | None:intergenic | 35.0% | |
| AGGATGAAGTTTCAAAGATG+AGG | + | chr4_2:24448702-24448721 | None:intergenic | 35.0% | |
| TGGTTTCTTCGCAAAAACAA+CGG | - | chr4_2:24448769-24448788 | Msa0595390:CDS | 35.0% | |
| ! | AGCACTTTATGAAAGTGCAA+TGG | - | chr4_2:24448967-24448986 | Msa0595390:intron | 35.0% |
| ! | GCACTTTATGAAAGTGCAAT+GGG | - | chr4_2:24448968-24448987 | Msa0595390:intron | 35.0% |
| ! | CACTTTATGAAAGTGCAATG+GGG | - | chr4_2:24448969-24448988 | Msa0595390:intron | 35.0% |
| ! | ACTTTATGAAAGTGCAATGG+GGG | - | chr4_2:24448970-24448989 | Msa0595390:intron | 35.0% |
| ! | TTTGGAATCTTTGGTTGATG+TGG | - | chr4_2:24449120-24449139 | Msa0595390:intron | 35.0% |
| AAAACAGTGCATTTGATGTG+AGG | + | chr4_2:24449190-24449209 | None:intergenic | 35.0% | |
| !! | CACTGTTTTAGATCAATCAC+AGG | - | chr4_2:24449201-24449220 | Msa0595390:intron | 35.0% |
| TTTAGATCAATCACAGGTTG+TGG | - | chr4_2:24449207-24449226 | Msa0595390:intron | 35.0% | |
| !! | GTGCCTCTAAAATATTCCTT+AGG | + | chr4_2:24450005-24450024 | None:intergenic | 35.0% |
| ! | GAGGCACTAAAATCAAATGT+TGG | - | chr4_2:24450018-24450037 | Msa0595390:CDS | 35.0% |
| CAAATGTTGGTACATTTAGG+GGG | - | chr4_2:24450031-24450050 | Msa0595390:CDS | 35.0% | |
| !! | AAAGTGGGTTTTGCATGATT+GGG | - | chr4_2:24450161-24450180 | Msa0595390:CDS | 35.0% |
| ! | AAAGAAGCTATTTCAGGGAA+AGG | - | chr4_2:24450219-24450238 | Msa0595390:CDS | 35.0% |
| ! | AAGAAGCTATTTCAGGGAAA+GGG | - | chr4_2:24450220-24450239 | Msa0595390:CDS | 35.0% |
| ATTTCAGGGAAAGGGAAAAA+AGG | - | chr4_2:24450228-24450247 | Msa0595390:CDS | 35.0% | |
| GTAATGATGACTCTGCATAA+TGG | - | chr4_2:24450333-24450352 | Msa0595390:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | - | chr4_2:24450381-24450400 | Msa0595390:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | - | chr4_2:24450414-24450433 | Msa0595390:CDS | 35.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_2:24448650-24448669 | Msa0595390:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_2:24448664-24448683 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_2:24448680-24448699 | None:intergenic | 40.0% | |
| TTCGCAAAAACAACGGTGAA+AGG | - | chr4_2:24448776-24448795 | Msa0595390:CDS | 40.0% | |
| ACTAACAAGTGGTGCAAAAC+AGG | + | chr4_2:24448876-24448895 | None:intergenic | 40.0% | |
| !! | TGTTTTGCACCACTTGTTAG+TGG | - | chr4_2:24448875-24448894 | Msa0595390:intron | 40.0% |
| ACATATCCAGAGAACATGGA+TGG | + | chr4_2:24448907-24448926 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_2:24448906-24448925 | Msa0595390:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_2:24448936-24448955 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_2:24448934-24448953 | Msa0595390:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_2:24449075-24449094 | Msa0595390:intron | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | + | chr4_2:24449108-24449127 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | - | chr4_2:24449111-24449130 | Msa0595390:intron | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_2:24449295-24449314 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_2:24449294-24449313 | Msa0595390:intron | 40.0% |
| ATCCACTCAGATGAGATTTG+GGG | + | chr4_2:24449711-24449730 | None:intergenic | 40.0% | |
| GATCCACTCAGATGAGATTT+GGG | + | chr4_2:24449712-24449731 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_2:24450160-24450179 | Msa0595390:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_2:24450310-24450329 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_2:24450311-24450330 | Msa0595390:CDS | 40.0% | |
| GTAGATGCAATCCACAAACA+TGG | - | chr4_2:24448650-24448669 | Msa0595390:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | + | chr4_2:24448664-24448683 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | + | chr4_2:24448680-24448699 | None:intergenic | 40.0% | |
| TTCGCAAAAACAACGGTGAA+AGG | - | chr4_2:24448776-24448795 | Msa0595390:CDS | 40.0% | |
| ACTAACAAGTGGTGCAAAAC+AGG | + | chr4_2:24448876-24448895 | None:intergenic | 40.0% | |
| !! | TGTTTTGCACCACTTGTTAG+TGG | - | chr4_2:24448875-24448894 | Msa0595390:intron | 40.0% |
| ACATATCCAGAGAACATGGA+TGG | + | chr4_2:24448907-24448926 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | - | chr4_2:24448906-24448925 | Msa0595390:intron | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | + | chr4_2:24448936-24448955 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | - | chr4_2:24448934-24448953 | Msa0595390:intron | 40.0% |
| ! | AATGTTCAAGCTTGCTCTCA+AGG | - | chr4_2:24449075-24449094 | Msa0595390:intron | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | + | chr4_2:24449108-24449127 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | - | chr4_2:24449111-24449130 | Msa0595390:intron | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_2:24449295-24449314 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_2:24449294-24449313 | Msa0595390:intron | 40.0% |
| ATCCACTCAGATGAGATTTG+GGG | + | chr4_2:24449711-24449730 | None:intergenic | 40.0% | |
| GATCCACTCAGATGAGATTT+GGG | + | chr4_2:24449712-24449731 | None:intergenic | 40.0% | |
| !! | CAAAGTGGGTTTTGCATGAT+TGG | - | chr4_2:24450160-24450179 | Msa0595390:CDS | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | + | chr4_2:24450310-24450329 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | - | chr4_2:24450311-24450330 | Msa0595390:CDS | 40.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | - | chr4_2:24448623-24448642 | Msa0595390:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_2:24448739-24448758 | None:intergenic | 45.0% | |
| ! | TTGCGCTTGCTAACACATGA+TGG | - | chr4_2:24448749-24448768 | Msa0595390:CDS | 45.0% |
| ACAACGGTGAAAGGCAAAGA+AGG | - | chr4_2:24448785-24448804 | Msa0595390:CDS | 45.0% | |
| CAACGGTGAAAGGCAAAGAA+GGG | - | chr4_2:24448786-24448805 | Msa0595390:CDS | 45.0% | |
| AACGGTGAAAGGCAAAGAAG+GGG | - | chr4_2:24448787-24448806 | Msa0595390:CDS | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | + | chr4_2:24448842-24448861 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | + | chr4_2:24448845-24448864 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | - | chr4_2:24448842-24448861 | Msa0595390:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_2:24448911-24448930 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_2:24448924-24448943 | Msa0595390:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_2:24448940-24448959 | Msa0595390:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_2:24449059-24449078 | None:intergenic | 45.0% | |
| GATTGCAGCCATGTGTTTGA+GGG | - | chr4_2:24449097-24449116 | Msa0595390:intron | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | - | chr4_2:24449124-24449143 | Msa0595390:intron | 45.0% |
| CAGGTTGTGGCTAACTTATC+TGG | - | chr4_2:24449220-24449239 | Msa0595390:intron | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_2:24449291-24449310 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_2:24449292-24449311 | None:intergenic | 45.0% | |
| GGATCCACTCAGATGAGATT+TGG | + | chr4_2:24449713-24449732 | None:intergenic | 45.0% | |
| TTTGAGGGATCGAAAGCCTA+AGG | - | chr4_2:24449986-24450005 | Msa0595390:CDS | 45.0% | |
| AGAGACTTGAAGCCGCATAT+GGG | + | chr4_2:24450429-24450448 | None:intergenic | 45.0% | |
| CTCAAATCAGCTGTGGAACT+AGG | - | chr4_2:24448623-24448642 | Msa0595390:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | + | chr4_2:24448739-24448758 | None:intergenic | 45.0% | |
| ! | TTGCGCTTGCTAACACATGA+TGG | - | chr4_2:24448749-24448768 | Msa0595390:CDS | 45.0% |
| ACAACGGTGAAAGGCAAAGA+AGG | - | chr4_2:24448785-24448804 | Msa0595390:CDS | 45.0% | |
| CAACGGTGAAAGGCAAAGAA+GGG | - | chr4_2:24448786-24448805 | Msa0595390:CDS | 45.0% | |
| AACGGTGAAAGGCAAAGAAG+GGG | - | chr4_2:24448787-24448806 | Msa0595390:CDS | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | + | chr4_2:24448842-24448861 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | + | chr4_2:24448845-24448864 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | - | chr4_2:24448842-24448861 | Msa0595390:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | + | chr4_2:24448911-24448930 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | - | chr4_2:24448924-24448943 | Msa0595390:intron | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | - | chr4_2:24448940-24448959 | Msa0595390:intron | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | + | chr4_2:24449059-24449078 | None:intergenic | 45.0% | |
| GATTGCAGCCATGTGTTTGA+GGG | - | chr4_2:24449097-24449116 | Msa0595390:intron | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | - | chr4_2:24449124-24449143 | Msa0595390:intron | 45.0% |
| CAGGTTGTGGCTAACTTATC+TGG | - | chr4_2:24449220-24449239 | Msa0595390:intron | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_2:24449291-24449310 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_2:24449292-24449311 | None:intergenic | 45.0% | |
| GGATCCACTCAGATGAGATT+TGG | + | chr4_2:24449713-24449732 | None:intergenic | 45.0% | |
| TTTGAGGGATCGAAAGCCTA+AGG | - | chr4_2:24449986-24450005 | Msa0595390:CDS | 45.0% | |
| AGAGACTTGAAGCCGCATAT+GGG | + | chr4_2:24450429-24450448 | None:intergenic | 45.0% | |
| !!! | ATTAATTTTTCTAAATATAA+TGG | + | chr4_2:24449573-24449592 | None:intergenic | 5.0% |
| !!! | ATTAATTTTTCTAAATATAA+TGG | + | chr4_2:24449573-24449592 | None:intergenic | 5.0% |
| !! | CACAGCTGATTTGAGTGCCA+TGG | + | chr4_2:24448618-24448637 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | - | chr4_2:24448616-24448635 | Msa0595390:CDS | 50.0% | |
| ! | TGGAGCACTCCACTAACAAG+TGG | + | chr4_2:24448887-24448906 | None:intergenic | 50.0% |
| AGTGCTCCATCCATGTTCTC+TGG | - | chr4_2:24448898-24448917 | Msa0595390:intron | 50.0% | |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | - | chr4_2:24449039-24449058 | Msa0595390:intron | 50.0% |
| GGATTGCAGCCATGTGTTTG+AGG | - | chr4_2:24449096-24449115 | Msa0595390:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_2:24449102-24449121 | Msa0595390:intron | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | - | chr4_2:24449127-24449146 | Msa0595390:intron | 50.0% |
| TGCCCCAAATCTCATCTGAG+TGG | - | chr4_2:24449706-24449725 | Msa0595390:intron | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | + | chr4_2:24450430-24450449 | None:intergenic | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | + | chr4_2:24448618-24448637 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | - | chr4_2:24448616-24448635 | Msa0595390:CDS | 50.0% | |
| ! | TGGAGCACTCCACTAACAAG+TGG | + | chr4_2:24448887-24448906 | None:intergenic | 50.0% |
| AGTGCTCCATCCATGTTCTC+TGG | - | chr4_2:24448898-24448917 | Msa0595390:intron | 50.0% | |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | - | chr4_2:24449039-24449058 | Msa0595390:intron | 50.0% |
| GGATTGCAGCCATGTGTTTG+AGG | - | chr4_2:24449096-24449115 | Msa0595390:intron | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | - | chr4_2:24449102-24449121 | Msa0595390:intron | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | - | chr4_2:24449127-24449146 | Msa0595390:intron | 50.0% |
| TGCCCCAAATCTCATCTGAG+TGG | - | chr4_2:24449706-24449725 | Msa0595390:intron | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | + | chr4_2:24450430-24450449 | None:intergenic | 50.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | - | chr4_2:24449133-24449152 | Msa0595390:intron | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | - | chr4_2:24449133-24449152 | Msa0595390:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 24448477 | 24450571 | 24448477 | ID=Msa0595390;Name=Msa0595390 |
| chr4_2 | mRNA | 24448477 | 24450571 | 24448477 | ID=Msa0595390-mRNA-1;Parent=Msa0595390;Name=Msa0595390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|1|1|1|1|2|104|363 |
| chr4_2 | exon | 24448477 | 24448883 | 24448477 | ID=Msa0595390-mRNA-1:exon:6585;Parent=Msa0595390-mRNA-1 |
| chr4_2 | exon | 24449733 | 24450571 | 24449733 | ID=Msa0595390-mRNA-1:exon:6584;Parent=Msa0595390-mRNA-1 |
| chr4_2 | five_prime_UTR | 24450522 | 24450571 | 24450522 | ID=Msa0595390-mRNA-1:five_prime_utr;Parent=Msa0595390-mRNA-1 |
| chr4_2 | CDS | 24449733 | 24450521 | 24449733 | ID=Msa0595390-mRNA-1:cds;Parent=Msa0595390-mRNA-1 |
| chr4_2 | CDS | 24448581 | 24448883 | 24448581 | ID=Msa0595390-mRNA-1:cds;Parent=Msa0595390-mRNA-1 |
| chr4_2 | three_prime_UTR | 24448477 | 24448580 | 24448477 | ID=Msa0595390-mRNA-1:three_prime_utr;Parent=Msa0595390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
