AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0676390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676390 MtrunA17_Chr4g0019941 95.464 485 12 2 1 481 1 479 0.0 936
Msa0676390 MtrunA17_Chr4g0024511 41.814 397 213 6 63 455 49 431 8.65e-93 289
Msa0676390 MtrunA17_Chr2g0288301 38.739 444 238 10 18 452 2 420 1.99e-89 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676390 AT2G30700.1 60.297 471 168 7 1 466 8 464 0.0 541
Msa0676390 AT2G30700.2 61.304 460 159 7 12 466 6 451 0.0 535
Msa0676390 AT1G61900.3 41.495 388 207 5 65 452 35 402 4.43e-94 291
Msa0676390 AT1G61900.1 41.071 392 207 6 65 452 35 406 8.51e-92 286
Msa0676390 AT1G61900.2 41.417 367 192 5 65 427 35 382 2.88e-90 281

Find 164 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCGGCGACTGTATT+TGG 0.154800 4_4:+26965376 None:intergenic
TACTTTAGGATGGAAATATT+TGG 0.177493 4_4:-26962175 Msa0676390:three_prime_UTR
ACATATTATAGCTTGTTTAT+TGG 0.193920 4_4:+26964011 None:intergenic
GATGCCACACTTCAGATTTC+TGG 0.225163 4_4:-26965133 Msa0676390:CDS
TGTAAAGTTAGATGATTTAA+TGG 0.254131 4_4:+26965288 None:intergenic
ATTAAATCATCTAACTTTAC+AGG 0.261288 4_4:-26965286 Msa0676390:CDS
ATAATATGTGCAACACAATT+TGG 0.263774 4_4:-26963997 Msa0676390:CDS
GGCACTTTGAAATGCCTTCC+TGG 0.269225 4_4:+26962682 None:intergenic
CTCACTGTTATTCTCCGATT+AGG 0.270879 4_4:-26967462 Msa0676390:five_prime_UTR
TGTTTGTCAGCCTGCAATTA+TGG 0.274909 4_4:-26965155 Msa0676390:CDS
TCGAGGATATCTGATATTTC+TGG 0.276018 4_4:+26965529 None:intergenic
TTGTGTTTACCCATTACTTT+AGG 0.290576 4_4:-26962189 Msa0676390:three_prime_UTR
TAGTATCCGGAATGCTTTAT+TGG 0.300906 4_4:+26964988 None:intergenic
ACTTAAAATGAGTTTCTTAG+AGG 0.310792 4_4:+26962298 None:intergenic
TCTGGTAGTGAAAAGTTTAC+AGG 0.313818 4_4:+26965547 None:intergenic
TCACTGTTATTCTCCGATTA+GGG 0.318218 4_4:-26967461 Msa0676390:five_prime_UTR
GAAAGTTATGGGCCGTTATC+AGG 0.318909 4_4:-26966190 Msa0676390:exon
AGTTAAAACTGGTTCATATC+TGG 0.327395 4_4:+26965579 None:intergenic
CATCTCTATGTGCGGCCGTT+TGG 0.337514 4_4:-26966272 Msa0676390:five_prime_UTR
TTAGCTAGTGAACCTACTTC+TGG 0.344149 4_4:-26965709 Msa0676390:CDS
GGCTTACCGACCCTTGATAA+TGG 0.345180 4_4:+26962436 None:intergenic
GTACCTTTGGCATCCCTTGT+AGG 0.354958 4_4:-26965484 Msa0676390:CDS
GTGAAGAATGGATCGGAAAA+TGG 0.354958 4_4:+26967435 None:intergenic
TGTACCTTTGTTGACTTTGC+AGG 0.358395 4_4:+26964961 None:intergenic
ATTTGATTGCGCTGTACCTT+TGG 0.364899 4_4:-26965497 Msa0676390:CDS
CCCATAACTTTCTAGCCCTT+TGG 0.366884 4_4:+26966201 None:intergenic
TCATTAAACACATATATTGC+AGG 0.381784 4_4:-26964057 Msa0676390:CDS
CCAGAGAAGTAGTTCGCTTA+TGG 0.382409 4_4:+26965737 None:intergenic
TTGATAATGGTATTATGTAT+TGG 0.387797 4_4:+26962449 None:intergenic
ACAGCAGGTGATATTTCTAT+AGG 0.389439 4_4:+26965667 None:intergenic
GCTGTCACATCTAGGAAATT+AGG 0.398675 4_4:+26965778 None:intergenic
GTGATATTTGACAATTCAAC+AGG 0.407151 4_4:-26963221 Msa0676390:CDS
TATTTCCATCCTAAAGTAAT+GGG 0.413408 4_4:+26962180 None:intergenic
GTTCCATTGCCCACCGAGTC+TGG 0.413888 4_4:-26965634 Msa0676390:CDS
CAGGATGCTAATTATTATAG+AGG 0.415037 4_4:-26966171 Msa0676390:intron
GGATCTATGTTACGCGGAGG+TGG 0.418269 4_4:-26963976 Msa0676390:CDS
ATAATTGCAGGCTGACAAAC+AGG 0.419121 4_4:+26965157 None:intergenic
GGGCATTTACCAGTTAAAAC+TGG 0.419706 4_4:+26965568 None:intergenic
GGGCCAGACTCGGTGGGCAA+TGG 0.421751 4_4:+26965631 None:intergenic
CCAAAGGGCTAGAAAGTTAT+GGG 0.422565 4_4:-26966201 Msa0676390:exon
GATCTATGTTACGCGGAGGT+GGG 0.427750 4_4:-26963975 Msa0676390:CDS
CTGGAAGGAAAACTAGGAAT+AGG 0.435227 4_4:+26965598 None:intergenic
TCGGTGGGCAATGGAACTTT+AGG 0.436404 4_4:+26965640 None:intergenic
TGCTAACTTTGATACTTGCT+TGG 0.438573 4_4:+26962488 None:intergenic
CTTCTTGTGCTGTCACATCT+AGG 0.441315 4_4:+26965770 None:intergenic
AAGCAAAGGACACGCGGAAG+GGG 0.443403 4_4:+26962597 None:intergenic
TACCTTTGGCATCCCTTGTA+GGG 0.443480 4_4:-26965483 Msa0676390:CDS
CGGAAAATGGAAACCCTAAT+CGG 0.445883 4_4:+26967448 None:intergenic
CGAACCCTTCACAGCACATA+TGG 0.446588 4_4:+26962534 None:intergenic
GATGATGAGGGCCAGGGTGC+AGG 0.446878 4_4:+26963164 None:intergenic
AAATCGCGGTACCGTGTAAG+AGG 0.447774 4_4:+26967375 None:intergenic
ACCAAAGGGCTAGAAAGTTA+TGG 0.448177 4_4:-26966202 Msa0676390:exon
TAGTGGATCAACAGTTCTGC+AGG 0.449305 4_4:+26965195 None:intergenic
AGAGAGGGGTGAAGAGAGGA+GGG 0.453978 4_4:+26967515 None:intergenic
TTAATCACAGATCTTAAGCT+TGG 0.455776 4_4:-26966317 Msa0676390:intron
GGGTGAAGAGAGGAGGGAGA+AGG 0.457890 4_4:+26967521 None:intergenic
GATTCATTTCCCCAGCCATA+TGG 0.458558 4_4:+26965083 None:intergenic
GCGGTGGTTGTTGTGAAGAA+TGG 0.466042 4_4:+26967423 None:intergenic
CCATAAGCGAACTACTTCTC+TGG 0.468283 4_4:-26965737 Msa0676390:CDS
TTGAAAGATTTCAGCATACA+AGG 0.468867 4_4:-26963916 Msa0676390:intron
TAGCTTAATCCACATTGTCC+AGG 0.471897 4_4:-26965434 Msa0676390:CDS
TTGAAAGGGAAAGGGTTTGA+AGG 0.473454 4_4:-26962143 Msa0676390:three_prime_UTR
GAGAGAGGGGTGAAGAGAGG+AGG 0.474698 4_4:+26967514 None:intergenic
AATAATTAGCATCCTGATAA+CGG 0.475753 4_4:+26966178 None:intergenic
TTATTAGTATTCTAGCCAGC+AGG 0.476306 4_4:-26965342 Msa0676390:CDS
GAACTGCAGCAGGAAGGACT+AGG 0.479182 4_4:+26964078 None:intergenic
AATACATAATACCATTATCA+AGG 0.480603 4_4:-26962447 Msa0676390:three_prime_UTR
CTTTGCAGGCAGATAGTATC+CGG 0.480872 4_4:+26964975 None:intergenic
TGTCTACTTCGAAGCTTGCC+TGG 0.482009 4_4:-26963248 Msa0676390:CDS
GACTGTGAAATTGGTAATGC+TGG 0.482168 4_4:+26962981 None:intergenic
AATAATGATGACCATATGGC+TGG 0.487366 4_4:-26965094 Msa0676390:CDS
AGGCTGCCAATAAAGCATTC+CGG 0.489161 4_4:-26964994 Msa0676390:CDS
TTGCAGGTTCTTTGTGCTGT+CGG 0.490846 4_4:-26965825 Msa0676390:intron
AGAGAGAGAGGGGTGAAGAG+AGG 0.491122 4_4:+26967511 None:intergenic
TTGTCAAATATCACATCTCC+AGG 0.496388 4_4:+26963230 None:intergenic
GATCAATAATGATGACCATA+TGG 0.500339 4_4:-26965098 Msa0676390:CDS
TGTGCAGGTTGTAATTCTGC+TGG 0.503503 4_4:-26962780 Msa0676390:intron
GTTTACCCATTACTTTAGGA+TGG 0.508405 4_4:-26962185 Msa0676390:three_prime_UTR
AGCAAAGGACACGCGGAAGG+GGG 0.510132 4_4:+26962598 None:intergenic
TCATATCTGGAAGGAAAACT+AGG 0.510421 4_4:+26965592 None:intergenic
TGTGTTTAATGAACTGCAGC+AGG 0.511944 4_4:+26964068 None:intergenic
CTCTAAACAATTATCAATTG+AGG 0.512399 4_4:-26965014 Msa0676390:CDS
AAAGTAGCATCATCCTTCAC+AGG 0.514850 4_4:+26965253 None:intergenic
AGTGTGGCATCCATAATTGC+AGG 0.514941 4_4:+26965145 None:intergenic
CTGGTAGTGAAAAGTTTACA+GGG 0.517012 4_4:+26965548 None:intergenic
AGGATCCATATGTGCTGTGA+AGG 0.520080 4_4:-26962539 Msa0676390:three_prime_UTR
CAAGCAAAGGACACGCGGAA+GGG 0.521362 4_4:+26962596 None:intergenic
GCAAAGGACACGCGGAAGGG+GGG 0.523324 4_4:+26962599 None:intergenic
ATATTTCCATCCTAAAGTAA+TGG 0.525757 4_4:+26962179 None:intergenic
AAATGAAGATGATGAGGGCC+AGG 0.525895 4_4:+26963157 None:intergenic
AGCTTAATCCACATTGTCCA+GGG 0.527714 4_4:-26965433 Msa0676390:CDS
AGGATGGAAATATTTGGATG+AGG 0.528141 4_4:-26962169 Msa0676390:three_prime_UTR
ATTTCTTGCTAAAGAAACCC+TGG 0.528607 4_4:+26965416 None:intergenic
AACTGCAGCAGGAAGGACTA+GGG 0.528868 4_4:+26964079 None:intergenic
ATCTATGTTACGCGGAGGTG+GGG 0.529380 4_4:-26963974 Msa0676390:CDS
TCTCTATCACTCTGTGCACC+TGG 0.531678 4_4:-26963131 Msa0676390:intron
GATGGAGCCAACTATGACCT+CGG 0.532970 4_4:+26966291 None:intergenic
TTTCAAAGTGCCAATGGTGT+GGG 0.535740 4_4:-26962671 Msa0676390:three_prime_UTR
ATTTCAAAGTGCCAATGGTG+TGG 0.538868 4_4:-26962672 Msa0676390:three_prime_UTR
AACATATTACATTCCCTACA+AGG 0.546364 4_4:+26965470 None:intergenic
GATTATCTAAATGATTGTAA+AGG 0.546518 4_4:-26965055 Msa0676390:CDS
GGTTGTAATTCTGCTGGAGT+GGG 0.548039 4_4:-26962774 Msa0676390:CDS
ACATGCAAAACCCACACCAT+TGG 0.548797 4_4:+26962661 None:intergenic
TGATTTAATGGAACAAAGTG+TGG 0.550287 4_4:+26965300 None:intergenic
AATCATCTAACTTTACAGGC+AGG 0.556495 4_4:-26965282 Msa0676390:CDS
AGTCCAGTGTCTCCAGAAGT+AGG 0.557488 4_4:+26965697 None:intergenic
AAACTAGGAATAGGATACAT+TGG 0.563403 4_4:+26965607 None:intergenic
TTGGAGTCCGAGGTCATAGT+TGG 0.566240 4_4:-26966298 Msa0676390:five_prime_UTR
TATTAGTATTCTAGCCAGCA+GGG 0.567822 4_4:-26965341 Msa0676390:CDS
ATAATGATGACCATATGGCT+GGG 0.570866 4_4:-26965093 Msa0676390:CDS
AATAAAATAAGCACTAACTC+AGG 0.573989 4_4:+26962563 None:intergenic
CATTAAACACATATATTGCA+GGG 0.575822 4_4:-26964056 Msa0676390:CDS
ATACATTGGTGGGCCAGACT+CGG 0.579184 4_4:+26965621 None:intergenic
GGATCCATATGTGCTGTGAA+GGG 0.581090 4_4:-26962538 Msa0676390:three_prime_UTR
AGATGTAAATGAAGATGATG+AGG 0.582125 4_4:+26963151 None:intergenic
CATACAGCAATTACATCTGT+AGG 0.582142 4_4:+26964117 None:intergenic
TTTACAGAAGTTCACTCCAA+CGG 0.582788 4_4:+26962234 None:intergenic
AGGTTGTAATTCTGCTGGAG+TGG 0.584237 4_4:-26962775 Msa0676390:CDS
TCACTCTCTCTCCTCTTACA+CGG 0.589894 4_4:-26967386 Msa0676390:intron
AGGCAGGTCATGCCCTGTGA+AGG 0.593141 4_4:-26965266 Msa0676390:CDS
GAACCTACTTCTGGAGACAC+TGG 0.596574 4_4:-26965700 Msa0676390:CDS
GTAGGCTCCGTAAAAGTCAA+AGG 0.597054 4_4:+26964135 None:intergenic
TAATGATGACCATATGGCTG+GGG 0.597575 4_4:-26965092 Msa0676390:CDS
ACAAGCAAAGGACACGCGGA+AGG 0.602034 4_4:+26962595 None:intergenic
GATGTAAATGAAGATGATGA+GGG 0.602047 4_4:+26963152 None:intergenic
CAAACGGCCGCACATAGAGA+TGG 0.602127 4_4:+26966273 None:intergenic
ATAATACCATTATCAAGGGT+CGG 0.604303 4_4:-26962442 Msa0676390:intron
AAGGCATTTCAAAGTGCCAA+TGG 0.607015 4_4:-26962677 Msa0676390:three_prime_UTR
GAAAGAGAAAAGAGTTGCGG+TGG 0.607432 4_4:+26967407 None:intergenic
TTAGTATTCTAGCCAGCAGG+GGG 0.607641 4_4:-26965339 Msa0676390:CDS
TAACACAAGCAAATTAGTTG+AGG 0.608537 4_4:-26965218 Msa0676390:CDS
GATCTTAAGCTTGGAGTCCG+AGG 0.609144 4_4:-26966308 Msa0676390:five_prime_UTR
ACTATATTATACAAGACTTG+TGG 0.612196 4_4:+26962257 None:intergenic
AGGCATGATCATACAAGCAA+AGG 0.612362 4_4:+26962583 None:intergenic
GATGCCCGTGAAAAGCCAAA+CGG 0.616772 4_4:+26966257 None:intergenic
ATACATAATACCATTATCAA+GGG 0.617288 4_4:-26962446 Msa0676390:three_prime_UTR
AGTGAAAGAGAAAAGAGTTG+CGG 0.618330 4_4:+26967404 None:intergenic
CTAGGAATAGGATACATTGG+TGG 0.625015 4_4:+26965610 None:intergenic
AAAACTGGTTCATATCTGGA+AGG 0.627199 4_4:+26965583 None:intergenic
CATTGGTGGGCCAGACTCGG+TGG 0.629766 4_4:+26965624 None:intergenic
GGAACTTTAGGTATGACAGC+AGG 0.632437 4_4:+26965652 None:intergenic
TTTAATGAACTGCAGCAGGA+AGG 0.635194 4_4:+26964072 None:intergenic
TCTTGTATAATATAGTCCGT+TGG 0.635571 4_4:-26962250 Msa0676390:three_prime_UTR
ATTAGTATTCTAGCCAGCAG+GGG 0.636003 4_4:-26965340 Msa0676390:CDS
ATGACAATATTCCTGCACCC+TGG 0.639884 4_4:-26963175 Msa0676390:CDS
AATCAAATGCTGTTCTATCG+AGG 0.642454 4_4:+26965512 None:intergenic
ATTGGTGGGCCAGACTCGGT+GGG 0.645667 4_4:+26965625 None:intergenic
GTTGGCTCCATCTCTATGTG+CGG 0.646659 4_4:-26966280 Msa0676390:five_prime_UTR
CAATTTGGATCTATGTTACG+CGG 0.649062 4_4:-26963982 Msa0676390:CDS
TAGGAATAGGATACATTGGT+GGG 0.655383 4_4:+26965611 None:intergenic
TGGATTAAGCTACTAAACTG+TGG 0.656377 4_4:+26965445 None:intergenic
AAGTAGCATCATCCTTCACA+GGG 0.661738 4_4:+26965254 None:intergenic
TAAAGAAACCCTGGACAATG+TGG 0.670707 4_4:+26965425 None:intergenic
ACATATTACATTCCCTACAA+GGG 0.676256 4_4:+26965471 None:intergenic
TCATACAAGCAAAGGACACG+CGG 0.684612 4_4:+26962591 None:intergenic
AAGGATGCTGCTATACAATG+AGG 0.685915 4_4:+26962624 None:intergenic
TCTGCCTGCAAAGTCAACAA+AGG 0.690004 4_4:-26964965 Msa0676390:intron
TTTGGATCTATGTTACGCGG+AGG 0.690805 4_4:-26963979 Msa0676390:CDS
AATGAAGATGATGAGGGCCA+GGG 0.698662 4_4:+26963158 None:intergenic
TTCCCTACAAGGGATGCCAA+AGG 0.700314 4_4:+26965481 None:intergenic
ACTGCAGCAGGAAGGACTAG+GGG 0.711004 4_4:+26964080 None:intergenic
GGTTGTTGTGAAGAATGGAT+CGG 0.712651 4_4:+26967428 None:intergenic
TCTGCCAGAAATCTGAAGTG+TGG 0.732002 4_4:+26965129 None:intergenic
TAGTATTCTAGCCAGCAGGG+GGG 0.756612 4_4:-26965338 Msa0676390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTAAATCTAAATTTT+CGG - chr4_4:26962487-26962506 Msa0676390:three_prime_UTR 10.0%
!!! CTTTTAATATTATATAACAA+TGG - chr4_4:26964744-26964763 Msa0676390:intron 10.0%
!! TATTATTTAAAAATGTGTAT+AGG + chr4_4:26965286-26965305 None:intergenic 10.0%
!!! CATTTAATTTCATTTTATAT+GGG + chr4_4:26965326-26965345 None:intergenic 10.0%
!!! ACATTTAATTTCATTTTATA+TGG + chr4_4:26965327-26965346 None:intergenic 10.0%
!! AATTAAATTATAAAAATACG+TGG + chr4_4:26966123-26966142 None:intergenic 10.0%
!! ATAGAGAAAAATAAATAAAA+TGG + chr4_4:26966712-26966731 None:intergenic 10.0%
!!! ATTGTTAAATCTAAATTTTC+GGG - chr4_4:26962488-26962507 Msa0676390:three_prime_UTR 15.0%
!!! GATTCATGATTATTTATTTT+AGG - chr4_4:26963524-26963543 Msa0676390:intron 15.0%
!! TAATATTATATTGCAATTAG+AGG - chr4_4:26964711-26964730 Msa0676390:intron 15.0%
!! AATATTACCATAAAGAAATT+AGG + chr4_4:26965004-26965023 None:intergenic 15.0%
!! TCATTAGTAAATATTACAAT+TGG - chr4_4:26965075-26965094 Msa0676390:CDS 15.0%
!! TACTATTTAAATACTTATCA+TGG + chr4_4:26965403-26965422 None:intergenic 15.0%
!! ATATATGTTATAACAATCAT+TGG - chr4_4:26965935-26965954 Msa0676390:intron 15.0%
!!! TTTTAGTAAAATAATACAGT+AGG - chr4_4:26965998-26966017 Msa0676390:intron 15.0%
!! AAAAATAAATAAAATGGAAC+TGG + chr4_4:26966706-26966725 None:intergenic 15.0%
!! ATTCACATTATTTAAATACT+TGG - chr4_4:26966769-26966788 Msa0676390:intron 15.0%
!! TTCACATTATTTAAATACTT+GGG - chr4_4:26966770-26966789 Msa0676390:intron 15.0%
!!! TTTGCATGTATATTTTTTAA+CGG - chr4_4:26966982-26967001 Msa0676390:intron 15.0%
!! TCGAATCAATAAAAAAAAAA+TGG - chr4_4:26967272-26967291 Msa0676390:intron 15.0%
!! AAAAAAAAAATGGCAATTAA+AGG - chr4_4:26967282-26967301 Msa0676390:intron 15.0%
!! AAAAAAAAATGGCAATTAAA+GGG - chr4_4:26967283-26967302 Msa0676390:intron 15.0%
!!! AATTTTCGATTATGTAACAT+TGG - chr4_4:26962343-26962362 Msa0676390:three_prime_UTR 20.0%
!! ATATATAGTAGCTACTAAAA+TGG - chr4_4:26962529-26962548 Msa0676390:three_prime_UTR 20.0%
!! AAACAAAGCATAAGTATTTA+GGG + chr4_4:26962632-26962651 None:intergenic 20.0%
!! ATGCTTAAGTATATTTATGT+TGG - chr4_4:26963136-26963155 Msa0676390:CDS 20.0%
!! ATAACACATATTACCATAAT+CGG + chr4_4:26963608-26963627 None:intergenic 20.0%
!!! TTCATGTATCAAGAAATTTT+CGG - chr4_4:26963663-26963682 Msa0676390:intron 20.0%
!! TGTAAAGTTAGATGATTTAA+TGG + chr4_4:26964344-26964363 None:intergenic 20.0%
!! ATTAAATCATCTAACTTTAC+AGG - chr4_4:26964343-26964362 Msa0676390:intron 20.0%
!! GATTATCTAAATGATTGTAA+AGG - chr4_4:26964574-26964593 Msa0676390:intron 20.0%
!! TGAAATTAGGTATATTCATT+AGG + chr4_4:26964964-26964983 None:intergenic 20.0%
!!! TTCATTAGTAAGTTGAAATT+AGG + chr4_4:26964977-26964996 None:intergenic 20.0%
!! GAATATACCTAATTTCTTTA+TGG - chr4_4:26964994-26965013 Msa0676390:CDS 20.0%
!! TAATGACTTGATACTAATTA+GGG + chr4_4:26964880-26964899 None:intergenic 20.0%
!! TGTTGTATTGAAAATTGAAA+AGG - chr4_4:26965113-26965132 Msa0676390:CDS 20.0%
!! ATTATTCAATAGAAAAGAGT+TGG - chr4_4:26965216-26965235 Msa0676390:CDS 20.0%
!! TTATTCAATAGAAAAGAGTT+GGG - chr4_4:26965217-26965236 Msa0676390:CDS 20.0%
!!! ACATATTATAGCTTGTTTAT+TGG + chr4_4:26965621-26965640 None:intergenic 20.0%
!!! AAACTAGAGATAATTTTCAA+TGG - chr4_4:26966187-26966206 Msa0676390:exon 20.0%
!!! ATTTTCATTTTTCATCAGTA+CGG - chr4_4:26966893-26966912 Msa0676390:intron 20.0%
!!! AGTTAGTGCTTATTTTATTT+AGG - chr4_4:26967070-26967089 Msa0676390:intron 20.0%
!!! TTGATAATGGTATTATGTAT+TGG + chr4_4:26967183-26967202 None:intergenic 20.0%
!! AATACATAATACCATTATCA+AGG - chr4_4:26967182-26967201 Msa0676390:intron 20.0%
!! ATACATAATACCATTATCAA+GGG - chr4_4:26967183-26967202 Msa0676390:intron 20.0%
!!! TAAAGCTTGATTTTTCAAAA+TGG - chr4_4:26967240-26967259 Msa0676390:intron 20.0%
!!! AGAAACTCATTTTAAGTATA+AGG - chr4_4:26967337-26967356 Msa0676390:intron 20.0%
!!! GAAACTCATTTTAAGTATAA+GGG - chr4_4:26967338-26967357 Msa0676390:intron 20.0%
!!! CTTTTATTTTTTTGGTTCGA+AGG - chr4_4:26962576-26962595 Msa0676390:three_prime_UTR 25.0%
! CAAACAAAGCATAAGTATTT+AGG + chr4_4:26962633-26962652 None:intergenic 25.0%
!! CTAAATACTTATGCTTTGTT+TGG - chr4_4:26962631-26962650 Msa0676390:three_prime_UTR 25.0%
!!! TAGCTTATTTTCACAAGTTT+TGG + chr4_4:26962768-26962787 None:intergenic 25.0%
! TTATATTAACAGCTTATGAC+AGG + chr4_4:26962946-26962965 None:intergenic 25.0%
!!! ATATTTATGTTGGCCTTTTT+AGG - chr4_4:26963146-26963165 Msa0676390:CDS 25.0%
! ATACCACATAATTCCTAAAA+AGG + chr4_4:26963162-26963181 None:intergenic 25.0%
! AGTTATTAATAGCTATCAGT+TGG - chr4_4:26963244-26963263 Msa0676390:CDS 25.0%
! AATAATTAGCATCCTGATAA+CGG + chr4_4:26963454-26963473 None:intergenic 25.0%
! TAACACATATTACCATAATC+GGG + chr4_4:26963607-26963626 None:intergenic 25.0%
!! ATGGTAATATGTGTTATTGT+TGG - chr4_4:26963611-26963630 Msa0676390:intron 25.0%
!! TGGTAATATGTGTTATTGTT+GGG - chr4_4:26963612-26963631 Msa0676390:intron 25.0%
! TTTAATTCTTCATTAGAGCA+AGG - chr4_4:26963691-26963710 Msa0676390:intron 25.0%
!!! GGTTAATTTTATTTGTCATC+TGG - chr4_4:26963825-26963844 Msa0676390:intron 25.0%
! TAGCAAGAAATCTAAAAATC+TGG - chr4_4:26964225-26964244 Msa0676390:intron 25.0%
! AACATCAGAAAAACAATGTT+CGG + chr4_4:26964269-26964288 None:intergenic 25.0%
! CTCTAAACAATTATCAATTG+AGG - chr4_4:26964615-26964634 Msa0676390:intron 25.0%
! AAGGTACATTGTTTAATATG+AGG - chr4_4:26964683-26964702 Msa0676390:intron 25.0%
! GTAAATATTACATATCTCGA+TGG + chr4_4:26964809-26964828 None:intergenic 25.0%
! CTAATGACTTGATACTAATT+AGG + chr4_4:26964881-26964900 None:intergenic 25.0%
!! ATTGAAAAGGTCATTCATTT+TGG - chr4_4:26965126-26965145 Msa0676390:CDS 25.0%
!! TTGAAAAGGTCATTCATTTT+GGG - chr4_4:26965127-26965146 Msa0676390:CDS 25.0%
! TCATTAAACACATATATTGC+AGG - chr4_4:26965572-26965591 Msa0676390:CDS 25.0%
! CATTAAACACATATATTGCA+GGG - chr4_4:26965573-26965592 Msa0676390:CDS 25.0%
! ATAATATGTGCAACACAATT+TGG - chr4_4:26965632-26965651 Msa0676390:CDS 25.0%
!!! GATATTTCTAGAATGATCAT+AGG + chr4_4:26965776-26965795 None:intergenic 25.0%
!! ATCATTGGTTAAATATGATC+AGG - chr4_4:26965950-26965969 Msa0676390:intron 25.0%
!! GAAAACTTGAGAATTTTCAA+TGG + chr4_4:26966066-26966085 None:intergenic 25.0%
!!! TTAATGGTGGATATTGAAAA+TGG + chr4_4:26966090-26966109 None:intergenic 25.0%
! TGTCTTGCTGAATATAATTA+TGG + chr4_4:26966278-26966297 None:intergenic 25.0%
! TAATTATATTCAGCAAGACA+AGG - chr4_4:26966278-26966297 Msa0676390:five_prime_UTR 25.0%
!!! TAGATGCTTTATTTTTGTCA+AGG - chr4_4:26966309-26966328 Msa0676390:five_prime_UTR 25.0%
! GATTGAATTGTGAGTTAAAT+TGG - chr4_4:26966335-26966354 Msa0676390:intron 25.0%
! TGAGTTAAATTGGTATTTGT+TGG - chr4_4:26966345-26966364 Msa0676390:intron 25.0%
!!! TTGCTTAACTTGTATCTATT+TGG - chr4_4:26966604-26966623 Msa0676390:intron 25.0%
!!! TTTTTCAATGACTGTGAAAT+TGG + chr4_4:26966660-26966679 None:intergenic 25.0%
! AATAAAATAAGCACTAACTC+AGG + chr4_4:26967069-26967088 None:intergenic 25.0%
! ACTTAAAATGAGTTTCTTAG+AGG + chr4_4:26967334-26967353 None:intergenic 25.0%
! ACTATATTATACAAGACTTG+TGG + chr4_4:26967375-26967394 None:intergenic 25.0%
! TATTTCCATCCTAAAGTAAT+GGG + chr4_4:26967452-26967471 None:intergenic 25.0%
! ATATTTCCATCCTAAAGTAA+TGG + chr4_4:26967453-26967472 None:intergenic 25.0%
!!! TACTTTAGGATGGAAATATT+TGG - chr4_4:26967454-26967473 Msa0676390:five_prime_UTR 25.0%
TTAGAATCAGTAAGTGTTAG+TGG + chr4_4:26962314-26962333 None:intergenic 30.0%
GTTTGTATTCAGTGCAAAAA+AGG - chr4_4:26962426-26962445 Msa0676390:intron 30.0%
TACTAAAATGGAGTTTGGTT+GGG - chr4_4:26962541-26962560 Msa0676390:three_prime_UTR 30.0%
! TTTTTCTTTCTTTCCTACAG+TGG - chr4_4:26962601-26962620 Msa0676390:three_prime_UTR 30.0%
! GTGAACTAGTTTAGATACTT+CGG + chr4_4:26962842-26962861 None:intergenic 30.0%
!! TATTCTGAAAAAGCACTACT+AGG - chr4_4:26963179-26963198 Msa0676390:CDS 30.0%
GATAAAAAGCTAGATAGACA+TGG + chr4_4:26963215-26963234 None:intergenic 30.0%
! CTATCAGTTGGTTTATGAAT+TGG - chr4_4:26963256-26963275 Msa0676390:CDS 30.0%
AGTAAAGTTTAGTCTCTGAT+TGG + chr4_4:26963286-26963305 None:intergenic 30.0%
TTAATCACAGATCTTAAGCT+TGG - chr4_4:26963312-26963331 Msa0676390:intron 30.0%
TAAAAACTCAATGTCACCAA+AGG - chr4_4:26963412-26963431 Msa0676390:intron 30.0%
AAAAACTCAATGTCACCAAA+GGG - chr4_4:26963413-26963432 Msa0676390:intron 30.0%
CAGGATGCTAATTATTATAG+AGG - chr4_4:26963458-26963477 Msa0676390:intron 30.0%
TGAATCATGATTCACTTGTA+AGG + chr4_4:26963510-26963529 None:intergenic 30.0%
!! TTGTTTTGTAAACCCGATTA+TGG - chr4_4:26963592-26963611 Msa0676390:intron 30.0%
! GGTAATATGTGTTATTGTTG+GGG - chr4_4:26963613-26963632 Msa0676390:intron 30.0%
! GTAATATGTGTTATTGTTGG+GGG - chr4_4:26963614-26963633 Msa0676390:intron 30.0%
! TAATATGTGTTATTGTTGGG+GGG - chr4_4:26963615-26963634 Msa0676390:intron 30.0%
AAACTAGGAATAGGATACAT+TGG + chr4_4:26964025-26964044 None:intergenic 30.0%
! AGTTAAAACTGGTTCATATC+TGG + chr4_4:26964053-26964072 None:intergenic 30.0%
!! AGATATGAACCAGTTTTAAC+TGG - chr4_4:26964052-26964071 Msa0676390:CDS 30.0%
ACATATTACATTCCCTACAA+GGG + chr4_4:26964161-26964180 None:intergenic 30.0%
AACATATTACATTCCCTACA+AGG + chr4_4:26964162-26964181 None:intergenic 30.0%
TGATTTAATGGAACAAAGTG+TGG + chr4_4:26964332-26964351 None:intergenic 30.0%
!!! TGATGCTACTTTTGAAAGAA+CGG - chr4_4:26964387-26964406 Msa0676390:intron 30.0%
TAACACAAGCAAATTAGTTG+AGG - chr4_4:26964411-26964430 Msa0676390:intron 30.0%
GATCAATAATGATGACCATA+TGG - chr4_4:26964531-26964550 Msa0676390:intron 30.0%
AATGACTTGATACAAAAGAC+TGG - chr4_4:26964830-26964849 Msa0676390:intron 30.0%
GTCATTAGTACCAAGAAATT+AGG - chr4_4:26964893-26964912 Msa0676390:intron 30.0%
ATACCTGATACCTAATTTCT+TGG + chr4_4:26964906-26964925 None:intergenic 30.0%
TATCAGGTATCAAGTCATTA+TGG - chr4_4:26964916-26964935 Msa0676390:intron 30.0%
! TGAAAAGGTCATTCATTTTG+GGG - chr4_4:26965128-26965147 Msa0676390:CDS 30.0%
GGCAATTTCTTTATGCAAAT+AGG - chr4_4:26965149-26965168 Msa0676390:CDS 30.0%
!!! GTTAGTCATTTTGAGACATA+GGG - chr4_4:26965171-26965190 Msa0676390:CDS 30.0%
GTCTTGGTACAAAAAAGAAA+AGG + chr4_4:26965246-26965265 None:intergenic 30.0%
!! AGTTTGTCCTTTGACTTTTA+CGG - chr4_4:26965487-26965506 Msa0676390:CDS 30.0%
TTGAAAGATTTCAGCATACA+AGG - chr4_4:26965713-26965732 Msa0676390:CDS 30.0%
! ACTTGAGAATTTTCAATGGA+GGG + chr4_4:26966062-26966081 None:intergenic 30.0%
! AACTTGAGAATTTTCAATGG+AGG + chr4_4:26966063-26966082 None:intergenic 30.0%
!!! TGGTTGTTGTATTTTAATGG+TGG + chr4_4:26966103-26966122 None:intergenic 30.0%
!! ACGTGGTTGTTGTATTTTAA+TGG + chr4_4:26966106-26966125 None:intergenic 30.0%
ACTTTCTCTCTTATGTTTGA+TGG - chr4_4:26966146-26966165 Msa0676390:intron 30.0%
!!! TTATCTCTAGTTTTCTCAAG+TGG + chr4_4:26966180-26966199 None:intergenic 30.0%
ATCCAAATGTATCCCATATA+CGG + chr4_4:26966226-26966245 None:intergenic 30.0%
CTTGCTGAATATAATTATGG+AGG + chr4_4:26966275-26966294 None:intergenic 30.0%
!! GTATTTGTTGGTTTAGATGT+AGG - chr4_4:26966357-26966376 Msa0676390:intron 30.0%
GTGATATTTGACAATTCAAC+AGG - chr4_4:26966408-26966427 Msa0676390:intron 30.0%
GATGTAAATGAAGATGATGA+GGG + chr4_4:26966480-26966499 None:intergenic 30.0%
AGATGTAAATGAAGATGATG+AGG + chr4_4:26966481-26966500 None:intergenic 30.0%
TCACAGTCATTGAAAAACAT+TGG - chr4_4:26966663-26966682 Msa0676390:intron 30.0%
TCTATGAATTAATACCATCC+AGG - chr4_4:26966727-26966746 Msa0676390:intron 30.0%
TCAATATTGACCCATGAATA+TGG - chr4_4:26966821-26966840 Msa0676390:intron 30.0%
ATAATACCATTATCAAGGGT+CGG - chr4_4:26967187-26967206 Msa0676390:intron 30.0%
!! TGGCAATTAAAGGGTTTTAT+TGG - chr4_4:26967292-26967311 Msa0676390:intron 30.0%
! TTTTATTGGTAGAGACAATC+TGG - chr4_4:26967306-26967325 Msa0676390:intron 30.0%
TCTTGTATAATATAGTCCGT+TGG - chr4_4:26967379-26967398 Msa0676390:intron 30.0%
TTGTGTTTACCCATTACTTT+AGG - chr4_4:26967440-26967459 Msa0676390:five_prime_UTR 30.0%
! ATTTGGATGAGGATTTTGAA+AGG - chr4_4:26967471-26967490 Msa0676390:five_prime_UTR 30.0%
!! TTTGGATGAGGATTTTGAAA+GGG - chr4_4:26967472-26967491 Msa0676390:five_prime_UTR 30.0%
TCACTGTTATTCTCCGATTA+GGG - chr4_4:26962168-26962187 Msa0676390:three_prime_UTR 35.0%
AGTGAAAGAGAAAAGAGTTG+CGG + chr4_4:26962228-26962247 None:intergenic 35.0%
!!! TCTCTAACCGCTTTTAACTT+TGG - chr4_4:26962283-26962302 Msa0676390:three_prime_UTR 35.0%
GGTAGAACCAAAGTTAAAAG+CGG + chr4_4:26962293-26962312 None:intergenic 35.0%
GTAGCTACTAAAATGGAGTT+TGG - chr4_4:26962536-26962555 Msa0676390:three_prime_UTR 35.0%
CTACTAAAATGGAGTTTGGT+TGG - chr4_4:26962540-26962559 Msa0676390:three_prime_UTR 35.0%
CTAAACTAGTTCACCCAAAT+TGG - chr4_4:26962848-26962867 Msa0676390:intron 35.0%
TGTTACTAGAGGTTAACTAC+TGG + chr4_4:26963000-26963019 None:intergenic 35.0%
TCACAACAAAGGATCTGTTT+GGG + chr4_4:26963028-26963047 None:intergenic 35.0%
TTCACAACAAAGGATCTGTT+TGG + chr4_4:26963029-26963048 None:intergenic 35.0%
GTCAATGTTCTTCACAACAA+AGG + chr4_4:26963039-26963058 None:intergenic 35.0%
!! TGGCCTTTTTAGGAATTATG+TGG - chr4_4:26963156-26963175 Msa0676390:CDS 35.0%
AGCTCTGTTTAAATTGTTGC+AGG - chr4_4:26963788-26963807 Msa0676390:intron 35.0%
! ACAGCAGGTGATATTTCTAT+AGG + chr4_4:26963965-26963984 None:intergenic 35.0%
TAGGAATAGGATACATTGGT+GGG + chr4_4:26964021-26964040 None:intergenic 35.0%
TCATATCTGGAAGGAAAACT+AGG + chr4_4:26964040-26964059 None:intergenic 35.0%
! AAAACTGGTTCATATCTGGA+AGG + chr4_4:26964049-26964068 None:intergenic 35.0%
! CTGGTAGTGAAAAGTTTACA+GGG + chr4_4:26964084-26964103 None:intergenic 35.0%
! TCTGGTAGTGAAAAGTTTAC+AGG + chr4_4:26964085-26964104 None:intergenic 35.0%
TCGAGGATATCTGATATTTC+TGG + chr4_4:26964103-26964122 None:intergenic 35.0%
AATCAAATGCTGTTCTATCG+AGG + chr4_4:26964120-26964139 None:intergenic 35.0%
TGGATTAAGCTACTAAACTG+TGG + chr4_4:26964187-26964206 None:intergenic 35.0%
ATTTCTTGCTAAAGAAACCC+TGG + chr4_4:26964216-26964235 None:intergenic 35.0%
TTATTAGTATTCTAGCCAGC+AGG - chr4_4:26964287-26964306 Msa0676390:intron 35.0%
TATTAGTATTCTAGCCAGCA+GGG - chr4_4:26964288-26964307 Msa0676390:intron 35.0%
AATCATCTAACTTTACAGGC+AGG - chr4_4:26964347-26964366 Msa0676390:intron 35.0%
AATAATGATGACCATATGGC+TGG - chr4_4:26964535-26964554 Msa0676390:intron 35.0%
ATAATGATGACCATATGGCT+GGG - chr4_4:26964536-26964555 Msa0676390:intron 35.0%
TAGTATCCGGAATGCTTTAT+TGG + chr4_4:26964644-26964663 None:intergenic 35.0%
ATTACATATCTCGATGGTCT+TGG + chr4_4:26964803-26964822 None:intergenic 35.0%
GTACCAAGAAATTAGGTATC+AGG - chr4_4:26964900-26964919 Msa0676390:intron 35.0%
!!! GGTTAGTCATTTTGAGACAT+AGG - chr4_4:26965170-26965189 Msa0676390:CDS 35.0%
TGTGAGTTACTATACAGTCT+TGG + chr4_4:26965262-26965281 None:intergenic 35.0%
ATTGTTTGATGCACATGCTA+AGG + chr4_4:26965353-26965372 None:intergenic 35.0%
CATACAGCAATTACATCTGT+AGG + chr4_4:26965515-26965534 None:intergenic 35.0%
CAATTTGGATCTATGTTACG+CGG - chr4_4:26965647-26965666 Msa0676390:CDS 35.0%
!! TATTTTGTTGTGACTTCGCA+TGG - chr4_4:26965807-26965826 Msa0676390:CDS 35.0%
TAATCTTCTCTCATGAGACT+TGG - chr4_4:26965910-26965929 Msa0676390:intron 35.0%
AATCTTCTCTCATGAGACTT+GGG - chr4_4:26965911-26965930 Msa0676390:intron 35.0%
!!! TAGGTTTTGTTAGTAGAACC+TGG - chr4_4:26966017-26966036 Msa0676390:intron 35.0%
TGTTAGTAGAACCTGGTATT+TGG - chr4_4:26966024-26966043 Msa0676390:intron 35.0%
GTTAGTAGAACCTGGTATTT+GGG - chr4_4:26966025-26966044 Msa0676390:intron 35.0%
TTAGTAGAACCTGGTATTTG+GGG - chr4_4:26966026-26966045 Msa0676390:intron 35.0%
! TCTCTCTTATGTTTGATGGT+TGG - chr4_4:26966150-26966169 Msa0676390:intron 35.0%
! CTCTCTTATGTTTGATGGTT+GGG - chr4_4:26966151-26966170 Msa0676390:intron 35.0%
ATGTATCCCATATACGGATT+CGG + chr4_4:26966220-26966239 None:intergenic 35.0%
ATCCGTATATGGGATACATT+TGG - chr4_4:26966221-26966240 Msa0676390:five_prime_UTR 35.0%
TTGTCAAATATCACATCTCC+AGG + chr4_4:26966402-26966421 None:intergenic 35.0%
AAATGGAACTGGAACCAAAA+CGG + chr4_4:26966695-26966714 None:intergenic 35.0%
! AATACTTGGGCCACAAATTT+TGG - chr4_4:26966783-26966802 Msa0676390:intron 35.0%
ATATTGACCCATGAATATGG+TGG - chr4_4:26966824-26966843 Msa0676390:intron 35.0%
! TACGGTTGTACTGAGATTTT+AGG - chr4_4:26966911-26966930 Msa0676390:intron 35.0%
TGCTAACTTTGATACTTGCT+TGG + chr4_4:26967144-26967163 None:intergenic 35.0%
CTCGAATCAACATATCATCT+TGG + chr4_4:26967217-26967236 None:intergenic 35.0%
!! AGATGATATGTTGATTCGAG+CGG - chr4_4:26967217-26967236 Msa0676390:intron 35.0%
TTTACAGAAGTTCACTCCAA+CGG + chr4_4:26967398-26967417 None:intergenic 35.0%
! GTTTACCCATTACTTTAGGA+TGG - chr4_4:26967444-26967463 Msa0676390:five_prime_UTR 35.0%
AGGATGGAAATATTTGGATG+AGG - chr4_4:26967460-26967479 Msa0676390:five_prime_UTR 35.0%
!! ATGAGGATTTTGAAAGGGAA+AGG - chr4_4:26967477-26967496 Msa0676390:five_prime_UTR 35.0%
!! TGAGGATTTTGAAAGGGAAA+GGG - chr4_4:26967478-26967497 Msa0676390:five_prime_UTR 35.0%
CTCACTGTTATTCTCCGATT+AGG - chr4_4:26962167-26962186 Msa0676390:three_prime_UTR 40.0%
CGGAAAATGGAAACCCTAAT+CGG + chr4_4:26962184-26962203 None:intergenic 40.0%
GTGAAGAATGGATCGGAAAA+TGG + chr4_4:26962197-26962216 None:intergenic 40.0%
GGTTGTTGTGAAGAATGGAT+CGG + chr4_4:26962204-26962223 None:intergenic 40.0%
GTTAGAGAGAGAGAAAATCG+CGG + chr4_4:26962271-26962290 None:intergenic 40.0%
ATTTAGGGATAAGCCACTGT+AGG + chr4_4:26962617-26962636 None:intergenic 40.0%
TTCTGCTGTAAGCTGCAAAT+AGG + chr4_4:26962665-26962684 None:intergenic 40.0%
ATTCTCCACTGTGCCAATTT+GGG + chr4_4:26962864-26962883 None:intergenic 40.0%
GAATCGAACATGAGACCTTA+AGG - chr4_4:26962880-26962899 Msa0676390:intron 40.0%
TTTGGGAAGGATGTTACTAG+AGG + chr4_4:26963011-26963030 None:intergenic 40.0%
AACAAAGGATCTGTTTGGGA+AGG + chr4_4:26963024-26963043 None:intergenic 40.0%
ACCAAAGGGCTAGAAAGTTA+TGG - chr4_4:26963427-26963446 Msa0676390:intron 40.0%
CCAAAGGGCTAGAAAGTTAT+GGG - chr4_4:26963428-26963447 Msa0676390:intron 40.0%
AGAGGTAAGCACTAGTAGTA+TGG - chr4_4:26963476-26963495 Msa0676390:intron 40.0%
GGCACATGTGTACAAATTGT+TGG - chr4_4:26963712-26963731 Msa0676390:intron 40.0%
GCTGTCACATCTAGGAAATT+AGG + chr4_4:26963854-26963873 None:intergenic 40.0%
TTAGCTAGTGAACCTACTTC+TGG - chr4_4:26963920-26963939 Msa0676390:CDS 40.0%
CTAGGAATAGGATACATTGG+TGG + chr4_4:26964022-26964041 None:intergenic 40.0%
CTGGAAGGAAAACTAGGAAT+AGG + chr4_4:26964034-26964053 None:intergenic 40.0%
GGGCATTTACCAGTTAAAAC+TGG + chr4_4:26964064-26964083 None:intergenic 40.0%
ATTTGATTGCGCTGTACCTT+TGG - chr4_4:26964132-26964151 Msa0676390:CDS 40.0%
TAGCTTAATCCACATTGTCC+AGG - chr4_4:26964195-26964214 Msa0676390:intron 40.0%
AGCTTAATCCACATTGTCCA+GGG - chr4_4:26964196-26964215 Msa0676390:intron 40.0%
TAAAGAAACCCTGGACAATG+TGG + chr4_4:26964207-26964226 None:intergenic 40.0%
ATTAGTATTCTAGCCAGCAG+GGG - chr4_4:26964289-26964308 Msa0676390:intron 40.0%
AAGTAGCATCATCCTTCACA+GGG + chr4_4:26964378-26964397 None:intergenic 40.0%
AAAGTAGCATCATCCTTCAC+AGG + chr4_4:26964379-26964398 None:intergenic 40.0%
ATAATTGCAGGCTGACAAAC+AGG + chr4_4:26964475-26964494 None:intergenic 40.0%
TGTTTGTCAGCCTGCAATTA+TGG - chr4_4:26964474-26964493 Msa0676390:intron 40.0%
TAATGATGACCATATGGCTG+GGG - chr4_4:26964537-26964556 Msa0676390:intron 40.0%
!! TGTACCTTTGTTGACTTTGC+AGG + chr4_4:26964671-26964690 None:intergenic 40.0%
TTTAATGAACTGCAGCAGGA+AGG + chr4_4:26965560-26965579 None:intergenic 40.0%
TGTGTTTAATGAACTGCAGC+AGG + chr4_4:26965564-26965583 None:intergenic 40.0%
ACAGCAATCGACAAAATGCA+AGG + chr4_4:26965876-26965895 None:intergenic 40.0%
TAGTAGAACCTGGTATTTGG+GGG - chr4_4:26966027-26966046 Msa0676390:intron 40.0%
AGAGAAACCGAATCCGTATA+TGG - chr4_4:26966210-26966229 Msa0676390:five_prime_UTR 40.0%
GAGAAACCGAATCCGTATAT+GGG - chr4_4:26966211-26966230 Msa0676390:five_prime_UTR 40.0%
ACTTTGTCCAAAGTCATACC+AGG + chr4_4:26966519-26966538 None:intergenic 40.0%
!! GACTGTGAAATTGGTAATGC+TGG + chr4_4:26966651-26966670 None:intergenic 40.0%
TAATTAATCAGCTGACAGCC+TGG + chr4_4:26966748-26966767 None:intergenic 40.0%
GTCAATATTGAATCCCACAC+AGG + chr4_4:26966812-26966831 None:intergenic 40.0%
GCACAATCCACCATATTCAT+GGG + chr4_4:26966834-26966853 None:intergenic 40.0%
TGCACAATCCACCATATTCA+TGG + chr4_4:26966835-26966854 None:intergenic 40.0%
!! ATGAATATGGTGGATTGTGC+AGG - chr4_4:26966834-26966853 Msa0676390:intron 40.0%
!!! TTAGGATTTTGAAGTGTGCC+AGG - chr4_4:26966929-26966948 Msa0676390:intron 40.0%
! AAGGCATTTCAAAGTGCCAA+TGG - chr4_4:26966952-26966971 Msa0676390:intron 40.0%
! ATTTCAAAGTGCCAATGGTG+TGG - chr4_4:26966957-26966976 Msa0676390:intron 40.0%
! TTTCAAAGTGCCAATGGTGT+GGG - chr4_4:26966958-26966977 Msa0676390:intron 40.0%
AAGGATGCTGCTATACAATG+AGG + chr4_4:26967008-26967027 None:intergenic 40.0%
AGGCATGATCATACAAGCAA+AGG + chr4_4:26967049-26967068 None:intergenic 40.0%
TTGAAAGGGAAAGGGTTTGA+AGG - chr4_4:26967486-26967505 Msa0676390:five_prime_UTR 40.0%
GAAAGAGAAAAGAGTTGCGG+TGG + chr4_4:26962225-26962244 None:intergenic 45.0%
TCACTCTCTCTCCTCTTACA+CGG - chr4_4:26962243-26962262 Msa0676390:three_prime_UTR 45.0%
GATTCTCCACTGTGCCAATT+TGG + chr4_4:26962865-26962884 None:intergenic 45.0%
! TTGGAGTGTGCTACTCCTTA+AGG + chr4_4:26962898-26962917 None:intergenic 45.0%
TTAAGGAGTAGCACACTCCA+AGG - chr4_4:26962897-26962916 Msa0676390:intron 45.0%
CTTATGACAGGAACCCACTT+GGG + chr4_4:26962934-26962953 None:intergenic 45.0%
! GCTTTTCACGGGCATCAATT+TGG - chr4_4:26963379-26963398 Msa0676390:intron 45.0%
! CCCATAACTTTCTAGCCCTT+TGG + chr4_4:26963431-26963450 None:intergenic 45.0%
GAAAGTTATGGGCCGTTATC+AGG - chr4_4:26963439-26963458 Msa0676390:intron 45.0%
TTGCAGGTTCTTTGTGCTGT+CGG - chr4_4:26963804-26963823 Msa0676390:intron 45.0%
CTTCTTGTGCTGTCACATCT+AGG + chr4_4:26963862-26963881 None:intergenic 45.0%
CCAGAGAAGTAGTTCGCTTA+TGG + chr4_4:26963895-26963914 None:intergenic 45.0%
CCATAAGCGAACTACTTCTC+TGG - chr4_4:26963892-26963911 Msa0676390:intron 45.0%
GGAACTTTAGGTATGACAGC+AGG + chr4_4:26963980-26963999 None:intergenic 45.0%
TACCTTTGGCATCCCTTGTA+GGG - chr4_4:26964146-26964165 Msa0676390:CDS 45.0%
CAATGTTCGGCGACTGTATT+TGG + chr4_4:26964256-26964275 None:intergenic 45.0%
TTAGTATTCTAGCCAGCAGG+GGG - chr4_4:26964290-26964309 Msa0676390:intron 45.0%
! TAGTGGATCAACAGTTCTGC+AGG + chr4_4:26964437-26964456 None:intergenic 45.0%
AGTGTGGCATCCATAATTGC+AGG + chr4_4:26964487-26964506 None:intergenic 45.0%
GATGCCACACTTCAGATTTC+TGG - chr4_4:26964496-26964515 Msa0676390:intron 45.0%
! TCTGCCAGAAATCTGAAGTG+TGG + chr4_4:26964503-26964522 None:intergenic 45.0%
GATTCATTTCCCCAGCCATA+TGG + chr4_4:26964549-26964568 None:intergenic 45.0%
! AGGCTGCCAATAAAGCATTC+CGG - chr4_4:26964635-26964654 Msa0676390:intron 45.0%
CTTTGCAGGCAGATAGTATC+CGG + chr4_4:26964657-26964676 None:intergenic 45.0%
TCTGCCTGCAAAGTCAACAA+AGG - chr4_4:26964664-26964683 Msa0676390:intron 45.0%
GTAGGCTCCGTAAAAGTCAA+AGG + chr4_4:26965497-26965516 None:intergenic 45.0%
TTTGGATCTATGTTACGCGG+AGG - chr4_4:26965650-26965669 Msa0676390:CDS 45.0%
AGTAGAACCTGGTATTTGGG+GGG - chr4_4:26966028-26966047 Msa0676390:intron 45.0%
ATGACAATATTCCTGCACCC+TGG - chr4_4:26966454-26966473 Msa0676390:intron 45.0%
AATGAAGATGATGAGGGCCA+GGG + chr4_4:26966474-26966493 None:intergenic 45.0%
AAATGAAGATGATGAGGGCC+AGG + chr4_4:26966475-26966494 None:intergenic 45.0%
ACACAGGCAGCCAAAATTTG+TGG + chr4_4:26966796-26966815 None:intergenic 45.0%
!!! ACAAATTTTGGCTGCCTGTG+TGG - chr4_4:26966795-26966814 Msa0676390:intron 45.0%
!!! CAAATTTTGGCTGCCTGTGT+GGG - chr4_4:26966796-26966815 Msa0676390:intron 45.0%
TGTGCAGGTTGTAATTCTGC+TGG - chr4_4:26966849-26966868 Msa0676390:intron 45.0%
AGGTTGTAATTCTGCTGGAG+TGG - chr4_4:26966854-26966873 Msa0676390:intron 45.0%
GGTTGTAATTCTGCTGGAGT+GGG - chr4_4:26966855-26966874 Msa0676390:intron 45.0%
!!! GATTTTGAAGTGTGCCAGGA+AGG - chr4_4:26966933-26966952 Msa0676390:intron 45.0%
ACATGCAAAACCCACACCAT+TGG + chr4_4:26966971-26966990 None:intergenic 45.0%
TCATACAAGCAAAGGACACG+CGG + chr4_4:26967041-26967060 None:intergenic 45.0%
AGGATCCATATGTGCTGTGA+AGG - chr4_4:26967090-26967109 Msa0676390:intron 45.0%
GGATCCATATGTGCTGTGAA+GGG - chr4_4:26967091-26967110 Msa0676390:intron 45.0%
!!! TTAATTATCTTTTATTTTTT+TGG - chr4_4:26962568-26962587 Msa0676390:three_prime_UTR 5.0%
!! TAAATAATAAAATTTCTTTA+TGG - chr4_4:26965297-26965316 Msa0676390:CDS 5.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr4_4:26962131-26962150 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr4_4:26962132-26962151 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr4_4:26962131-26962150 None:intergenic 50.0%
GCGGTGGTTGTTGTGAAGAA+TGG + chr4_4:26962209-26962228 None:intergenic 50.0%
AAATCGCGGTACCGTGTAAG+AGG + chr4_4:26962257-26962276 None:intergenic 50.0%
GTTCACCCAAATTGGCACAG+TGG - chr4_4:26962856-26962875 Msa0676390:intron 50.0%
GCTTATGACAGGAACCCACT+TGG + chr4_4:26962935-26962954 None:intergenic 50.0%
GATCTTAAGCTTGGAGTCCG+AGG - chr4_4:26963321-26963340 Msa0676390:intron 50.0%
TTGGAGTCCGAGGTCATAGT+TGG - chr4_4:26963331-26963350 Msa0676390:intron 50.0%
GATGGAGCCAACTATGACCT+CGG + chr4_4:26963341-26963360 None:intergenic 50.0%
! GTTGGCTCCATCTCTATGTG+CGG - chr4_4:26963349-26963368 Msa0676390:intron 50.0%
GATGCCCGTGAAAAGCCAAA+CGG + chr4_4:26963375-26963394 None:intergenic 50.0%
! GAACCTACTTCTGGAGACAC+TGG - chr4_4:26963929-26963948 Msa0676390:CDS 50.0%
AGTCCAGTGTCTCCAGAAGT+AGG + chr4_4:26963935-26963954 None:intergenic 50.0%
TCGGTGGGCAATGGAACTTT+AGG + chr4_4:26963992-26964011 None:intergenic 50.0%
! ATACATTGGTGGGCCAGACT+CGG + chr4_4:26964011-26964030 None:intergenic 50.0%
GTACCTTTGGCATCCCTTGT+AGG - chr4_4:26964145-26964164 Msa0676390:CDS 50.0%
TTCCCTACAAGGGATGCCAA+AGG + chr4_4:26964151-26964170 None:intergenic 50.0%
TAGTATTCTAGCCAGCAGGG+GGG - chr4_4:26964291-26964310 Msa0676390:intron 50.0%
! GGTCTGCAGCACTCTTTTAG+TGG + chr4_4:26964454-26964473 None:intergenic 50.0%
AACTGCAGCAGGAAGGACTA+GGG + chr4_4:26965553-26965572 None:intergenic 50.0%
GATCTATGTTACGCGGAGGT+GGG - chr4_4:26965654-26965673 Msa0676390:CDS 50.0%
ATCTATGTTACGCGGAGGTG+GGG - chr4_4:26965655-26965674 Msa0676390:CDS 50.0%
TTGTGACTTCGCATGGTGCT+GGG - chr4_4:26965814-26965833 Msa0676390:CDS 50.0%
AACCTGGTATTTGGGGGGAT+TGG - chr4_4:26966033-26966052 Msa0676390:intron 50.0%
ATCCAATCCCCCCAAATACC+AGG + chr4_4:26966038-26966057 None:intergenic 50.0%
TGTCTACTTCGAAGCTTGCC+TGG - chr4_4:26966381-26966400 Msa0676390:intron 50.0%
TCTCTATCACTCTGTGCACC+TGG - chr4_4:26966498-26966517 Msa0676390:intron 50.0%
CTGTGCACCTGGTATGACTT+TGG - chr4_4:26966509-26966528 Msa0676390:intron 50.0%
!!! AACATTGGTGCGTGCCGTTT+TGG - chr4_4:26966678-26966697 Msa0676390:intron 50.0%
TAATCAGCTGACAGCCTGGA+TGG + chr4_4:26966744-26966763 None:intergenic 50.0%
!! GGCACTTTGAAATGCCTTCC+TGG + chr4_4:26966950-26966969 None:intergenic 50.0%
CGAACCCTTCACAGCACATA+TGG + chr4_4:26967098-26967117 None:intergenic 50.0%
GGCTTACCGACCCTTGATAA+TGG + chr4_4:26967196-26967215 None:intergenic 50.0%
AGAGAGGGGTGAAGAGAGGA+GGG + chr4_4:26962117-26962136 None:intergenic 55.0%
AGAGAGAGAGGGGTGAAGAG+AGG + chr4_4:26962121-26962140 None:intergenic 55.0%
!! GAACCCACTTGGGTTGGCTT+GGG + chr4_4:26962924-26962943 None:intergenic 55.0%
TGACAGGAACCCACTTGGGT+TGG + chr4_4:26962930-26962949 None:intergenic 55.0%
CAAACGGCCGCACATAGAGA+TGG + chr4_4:26963359-26963378 None:intergenic 55.0%
CATCTCTATGTGCGGCCGTT+TGG - chr4_4:26963357-26963376 Msa0676390:intron 55.0%
!!! TGCGGCCGTTTGGCTTTTCA+CGG - chr4_4:26963367-26963386 Msa0676390:intron 55.0%
ACTGCAGCAGGAAGGACTAG+GGG + chr4_4:26965552-26965571 None:intergenic 55.0%
GAACTGCAGCAGGAAGGACT+AGG + chr4_4:26965554-26965573 None:intergenic 55.0%
GGATCTATGTTACGCGGAGG+TGG - chr4_4:26965653-26965672 Msa0676390:CDS 55.0%
GTTGTGACTTCGCATGGTGC+TGG - chr4_4:26965813-26965832 Msa0676390:CDS 55.0%
! TGTGACTTCGCATGGTGCTG+GGG - chr4_4:26965815-26965834 Msa0676390:CDS 55.0%
AAGCAAAGGACACGCGGAAG+GGG + chr4_4:26967035-26967054 None:intergenic 55.0%
CAAGCAAAGGACACGCGGAA+GGG + chr4_4:26967036-26967055 None:intergenic 55.0%
ACAAGCAAAGGACACGCGGA+AGG + chr4_4:26967037-26967056 None:intergenic 55.0%
GGGTGAAGAGAGGAGGGAGA+AGG + chr4_4:26962111-26962130 None:intergenic 60.0%
GAGAGAGGGGTGAAGAGAGG+AGG + chr4_4:26962118-26962137 None:intergenic 60.0%
!! CTTGGGTTGGCTTGGGACCT+TGG + chr4_4:26962917-26962936 None:intergenic 60.0%
AGGTCCCAAGCCAACCCAAG+TGG - chr4_4:26962917-26962936 Msa0676390:intron 60.0%
GGTCCCAAGCCAACCCAAGT+GGG - chr4_4:26962918-26962937 Msa0676390:intron 60.0%
!! GGAACCCACTTGGGTTGGCT+TGG + chr4_4:26962925-26962944 None:intergenic 60.0%
!!! GCGGCCGTTTGGCTTTTCAC+GGG - chr4_4:26963368-26963387 Msa0676390:intron 60.0%
GTTCCATTGCCCACCGAGTC+TGG - chr4_4:26963995-26964014 Msa0676390:CDS 60.0%
! ATTGGTGGGCCAGACTCGGT+GGG + chr4_4:26964007-26964026 None:intergenic 60.0%
CGAACTATTTGCCCCCCTGC+TGG + chr4_4:26964305-26964324 None:intergenic 60.0%
AGGCAGGTCATGCCCTGTGA+AGG - chr4_4:26964363-26964382 Msa0676390:intron 60.0%
AGCAAAGGACACGCGGAAGG+GGG + chr4_4:26967034-26967053 None:intergenic 60.0%
! CATTGGTGGGCCAGACTCGG+TGG + chr4_4:26964008-26964027 None:intergenic 65.0%
GCTGGGGCAGCATGCAGACA+AGG - chr4_4:26965831-26965850 Msa0676390:intron 65.0%
GATGATGAGGGCCAGGGTGC+AGG + chr4_4:26966468-26966487 None:intergenic 65.0%
GCAAAGGACACGCGGAAGGG+GGG + chr4_4:26967033-26967052 None:intergenic 65.0%
!! GGGCCAGACTCGGTGGGCAA+TGG + chr4_4:26964001-26964020 None:intergenic 70.0%
GACACGCGGAAGGGGGGCAA+AGG + chr4_4:26967027-26967046 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 26962107 26967544 26962107 ID=Msa0676390;Name=Msa0676390
chr4_4 mRNA 26962107 26967544 26962107 ID=Msa0676390-mRNA-1;Parent=Msa0676390;Name=Msa0676390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=282|0.85|0.87|1|0.71|0.5|8|584|481
chr4_4 exon 26962107 26962414 26962107 ID=Msa0676390-mRNA-1:exon:7151;Parent=Msa0676390-mRNA-1
chr4_4 exon 26962443 26962795 26962443 ID=Msa0676390-mRNA-1:exon:7150;Parent=Msa0676390-mRNA-1
chr4_4 exon 26962967 26963014 26962967 ID=Msa0676390-mRNA-1:exon:7149;Parent=Msa0676390-mRNA-1
chr4_4 exon 26963132 26963278 26963132 ID=Msa0676390-mRNA-1:exon:7148;Parent=Msa0676390-mRNA-1
chr4_4 exon 26963917 26964180 26963917 ID=Msa0676390-mRNA-1:exon:7147;Parent=Msa0676390-mRNA-1
chr4_4 exon 26964966 26965841 26964966 ID=Msa0676390-mRNA-1:exon:7146;Parent=Msa0676390-mRNA-1
chr4_4 exon 26966172 26966329 26966172 ID=Msa0676390-mRNA-1:exon:7145;Parent=Msa0676390-mRNA-1
chr4_4 exon 26967387 26967544 26967387 ID=Msa0676390-mRNA-1:exon:7144;Parent=Msa0676390-mRNA-1
chr4_4 five_prime_UTR 26967387 26967544 26967387 ID=Msa0676390-mRNA-1:five_prime_utr;Parent=Msa0676390-mRNA-1
chr4_4 five_prime_UTR 26966206 26966329 26966206 ID=Msa0676390-mRNA-1:five_prime_utr;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26966172 26966205 26966172 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26964966 26965841 26964966 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26963917 26964180 26963917 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26963132 26963278 26963132 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26962967 26963014 26962967 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 CDS 26962719 26962795 26962719 ID=Msa0676390-mRNA-1:cds;Parent=Msa0676390-mRNA-1
chr4_4 three_prime_UTR 26962443 26962718 26962443 ID=Msa0676390-mRNA-1:three_prime_utr;Parent=Msa0676390-mRNA-1
chr4_4 three_prime_UTR 26962107 26962414 26962107 ID=Msa0676390-mRNA-1:three_prime_utr;Parent=Msa0676390-mRNA-1
Gene Sequence

>Msa0676390

ATGGGCCGTTATCAGGATGCTAATTATTATAGAGGTTCTTTGTGCTGTCGGTTAATTTTATTTGTCATCTGGCTTCCTAATTTCCTAGATGTGACAGCACAAGAAGTACACGCTGACCATAAGCGAACTACTTCTCTGGTAGTGTTAGCTAGTGAACCTACTTCTGGAGACACTGGACTCTTTGAACCTATAGAAATATCACCTGCTGTCATACCTAAAGTTCCATTGCCCACCGAGTCTGGCCCACCAATGTATCCTATTCCTAGTTTTCCTTCCAGATATGAACCAGTTTTAACTGGTAAATGCCCTGTAAACTTTTCACTACCAGAAATATCAGATATCCTCGATAGAACAGCATTTGATTGCGCTGTACCTTTGGCATCCCTTGTAGGGAATGTAATATGTTGTCCACAGTTTAGTAGCTTAATCCACATTGTCCAGGGTTTCTTTAGCAAGAAATCTAAAAATCTGGTTTTACCAAATACAGTCGCCGAACATTGTTTTTCTGATGTTATTAGTATTCTAGCCAGCAGGGGGGCAAATAGTTCGCTCTCCACACTTTGTTCCATTAAATCATCTAACTTTACAGGCAGGTCATGCCCTGTGAAGGATGATGCTACTTTTGAAAGAACGGTTAACACAAGCAAATTAGTTGAGGCCTGCAGAACTGTTGATCCACTAAAAGAGTGCTGCAGACCTGTTTGTCAGCCTGCAATTATGGATGCCACACTTCAGATTTCTGGCAGACAAATGATGATCAATAATGATGACCATATGGCTGGGGAAATGAATCACACTGATTATCTAAATGATTGTAAAGGCGTAGTTTATTCATATCTCTCTAAACAATTATCAATTGAGGCTGCCAATAAAGCATTCCGGATACTATCTGCCTGCAAAGTCAACAAAGTAAATCTTGCTTTTGCAGTTTGTCCTTTGACTTTTACGGAGCCTACAGATGTAATTGCTGTATGTCAGAATGTAGCTGCCCCTAGTCCTTCCTGCTGCAGTTCATTAAACACATATATTGCAGGGATACAAAAACAAATGTTAGTTACCAATAAACAAGCTATAATATGTGCAACACAATTTGGATCTATGTTACGCGGAGGTGGGGTGATGACAAATGTCTATGAGCTTTGTGATGTTGATTTGAAAGATTTCAGCATACAAGATGTAGGATGTCTACTTCGAAGCTTGCCTGGAGATGTGATATTTGACAATTCAACAGGCGTTAGTTTTACATGTGATTTAAATGACAATATTCCTGCACCCTGGCCCTCATCATCTTCATTTACATCTCTATCACTCTGTGCACCTGAGATGTCATTACCAGCATTACCAATTTCACAGTCATTGAAAAACATTGGTTGTAATTCTGCTGGAGTGGGATTGCTTGCAATTATATTTTCATTTTTCATCAGTACGGTTGTACTGAGATTTTAG
Protein sequence

>Msa0676390

MGRYQDANYYRGSLCCRLILFVIWLPNFLDVTAQEVHADHKRTTSLVVLASEPTSGDTGLFEPIEISPAVIPKVPLPTESGPPMYPIPSFPSRYEPVLTGKCPVNFSLPEISDILDRTAFDCAVPLASLVGNVICCPQFSSLIHIVQGFFSKKSKNLVLPNTVAEHCFSDVISILASRGANSSLSTLCSIKSSNFTGRSCPVKDDATFERTVNTSKLVEACRTVDPLKECCRPVCQPAIMDATLQISGRQMMINNDDHMAGEMNHTDYLNDCKGVVYSYLSKQLSIEAANKAFRILSACKVNKVNLAFAVCPLTFTEPTDVIAVCQNVAAPSPSCCSSLNTYIAGIQKQMLVTNKQAIICATQFGSMLRGGGVMTNVYELCDVDLKDFSIQDVGCLLRSLPGDVIFDNSTGVSFTCDLNDNIPAPWPSSSSFTSLSLCAPEMSLPALPISQSLKNIGCNSAGVGLLAIIFSFFISTVVLRF*