AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143600 MtrunA17_Chr4g0019941 95.464 485 12 2 1 481 1 479 0.0 936
Msa1143600 MtrunA17_Chr4g0024511 41.814 397 213 6 63 455 49 431 8.65e-93 289
Msa1143600 MtrunA17_Chr2g0288301 38.739 444 238 10 18 452 2 420 1.99e-89 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143600 AT2G30700.1 60.297 471 168 7 1 466 8 464 0.0 541
Msa1143600 AT2G30700.2 61.304 460 159 7 12 466 6 451 0.0 535
Msa1143600 AT1G61900.3 41.495 388 207 5 65 452 35 402 4.43e-94 291
Msa1143600 AT1G61900.1 41.071 392 207 6 65 452 35 406 8.51e-92 286
Msa1143600 AT1G61900.2 41.417 367 192 5 65 427 35 382 2.88e-90 281

Find 164 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCGGCGACTGTATT+TGG 0.154800 7_4:+19310977 None:intergenic
TACTTTAGGATGGAAATATT+TGG 0.177493 7_4:-19307776 Msa1143600:three_prime_UTR
ACATATTATAGCTTGTTTAT+TGG 0.193920 7_4:+19309612 None:intergenic
GATGCCACACTTCAGATTTC+TGG 0.225163 7_4:-19310734 Msa1143600:CDS
TGTAAAGTTAGATGATTTAA+TGG 0.254131 7_4:+19310889 None:intergenic
ATTAAATCATCTAACTTTAC+AGG 0.261288 7_4:-19310887 Msa1143600:CDS
ATAATATGTGCAACACAATT+TGG 0.263774 7_4:-19309598 Msa1143600:CDS
GGCACTTTGAAATGCCTTCC+TGG 0.269225 7_4:+19308283 None:intergenic
CTCACTGTTATTCTCCGATT+AGG 0.270879 7_4:-19313063 Msa1143600:five_prime_UTR
TGTTTGTCAGCCTGCAATTA+TGG 0.274909 7_4:-19310756 Msa1143600:CDS
TCGAGGATATCTGATATTTC+TGG 0.276018 7_4:+19311130 None:intergenic
TTGTGTTTACCCATTACTTT+AGG 0.290576 7_4:-19307790 Msa1143600:three_prime_UTR
TAGTATCCGGAATGCTTTAT+TGG 0.300906 7_4:+19310589 None:intergenic
ACTTAAAATGAGTTTCTTAG+AGG 0.310792 7_4:+19307899 None:intergenic
TCTGGTAGTGAAAAGTTTAC+AGG 0.313818 7_4:+19311148 None:intergenic
TCACTGTTATTCTCCGATTA+GGG 0.318218 7_4:-19313062 Msa1143600:five_prime_UTR
GAAAGTTATGGGCCGTTATC+AGG 0.318909 7_4:-19311791 Msa1143600:exon
AGTTAAAACTGGTTCATATC+TGG 0.327395 7_4:+19311180 None:intergenic
CATCTCTATGTGCGGCCGTT+TGG 0.337514 7_4:-19311873 Msa1143600:five_prime_UTR
TTAGCTAGTGAACCTACTTC+TGG 0.344149 7_4:-19311310 Msa1143600:CDS
GGCTTACCGACCCTTGATAA+TGG 0.345180 7_4:+19308037 None:intergenic
GTACCTTTGGCATCCCTTGT+AGG 0.354958 7_4:-19311085 Msa1143600:CDS
GTGAAGAATGGATCGGAAAA+TGG 0.354958 7_4:+19313036 None:intergenic
TGTACCTTTGTTGACTTTGC+AGG 0.358395 7_4:+19310562 None:intergenic
ATTTGATTGCGCTGTACCTT+TGG 0.364899 7_4:-19311098 Msa1143600:CDS
CCCATAACTTTCTAGCCCTT+TGG 0.366884 7_4:+19311802 None:intergenic
TCATTAAACACATATATTGC+AGG 0.381784 7_4:-19309658 Msa1143600:CDS
CCAGAGAAGTAGTTCGCTTA+TGG 0.382409 7_4:+19311338 None:intergenic
TTGATAATGGTATTATGTAT+TGG 0.387797 7_4:+19308050 None:intergenic
ACAGCAGGTGATATTTCTAT+AGG 0.389439 7_4:+19311268 None:intergenic
GCTGTCACATCTAGGAAATT+AGG 0.398675 7_4:+19311379 None:intergenic
GTGATATTTGACAATTCAAC+AGG 0.407151 7_4:-19308822 Msa1143600:CDS
TATTTCCATCCTAAAGTAAT+GGG 0.413408 7_4:+19307781 None:intergenic
GTTCCATTGCCCACCGAGTC+TGG 0.413888 7_4:-19311235 Msa1143600:CDS
CAGGATGCTAATTATTATAG+AGG 0.415037 7_4:-19311772 Msa1143600:intron
GGATCTATGTTACGCGGAGG+TGG 0.418269 7_4:-19309577 Msa1143600:CDS
ATAATTGCAGGCTGACAAAC+AGG 0.419121 7_4:+19310758 None:intergenic
GGGCATTTACCAGTTAAAAC+TGG 0.419706 7_4:+19311169 None:intergenic
GGGCCAGACTCGGTGGGCAA+TGG 0.421751 7_4:+19311232 None:intergenic
CCAAAGGGCTAGAAAGTTAT+GGG 0.422565 7_4:-19311802 Msa1143600:exon
GATCTATGTTACGCGGAGGT+GGG 0.427750 7_4:-19309576 Msa1143600:CDS
CTGGAAGGAAAACTAGGAAT+AGG 0.435227 7_4:+19311199 None:intergenic
TCGGTGGGCAATGGAACTTT+AGG 0.436404 7_4:+19311241 None:intergenic
TGCTAACTTTGATACTTGCT+TGG 0.438573 7_4:+19308089 None:intergenic
CTTCTTGTGCTGTCACATCT+AGG 0.441315 7_4:+19311371 None:intergenic
AAGCAAAGGACACGCGGAAG+GGG 0.443403 7_4:+19308198 None:intergenic
TACCTTTGGCATCCCTTGTA+GGG 0.443480 7_4:-19311084 Msa1143600:CDS
CGGAAAATGGAAACCCTAAT+CGG 0.445883 7_4:+19313049 None:intergenic
CGAACCCTTCACAGCACATA+TGG 0.446588 7_4:+19308135 None:intergenic
GATGATGAGGGCCAGGGTGC+AGG 0.446878 7_4:+19308765 None:intergenic
AAATCGCGGTACCGTGTAAG+AGG 0.447774 7_4:+19312976 None:intergenic
ACCAAAGGGCTAGAAAGTTA+TGG 0.448177 7_4:-19311803 Msa1143600:exon
TAGTGGATCAACAGTTCTGC+AGG 0.449305 7_4:+19310796 None:intergenic
AGAGAGGGGTGAAGAGAGGA+GGG 0.453978 7_4:+19313118 None:intergenic
TTAATCACAGATCTTAAGCT+TGG 0.455776 7_4:-19311918 Msa1143600:intron
GGGTGAAGAGAGGAGGGAGA+AGG 0.457890 7_4:+19313124 None:intergenic
GATTCATTTCCCCAGCCATA+TGG 0.458558 7_4:+19310684 None:intergenic
GCGGTGGTTGTTGTGAAGAA+TGG 0.466042 7_4:+19313024 None:intergenic
CCATAAGCGAACTACTTCTC+TGG 0.468283 7_4:-19311338 Msa1143600:CDS
TTGAAAGATTTCAGCATACA+AGG 0.468867 7_4:-19309517 Msa1143600:intron
TAGCTTAATCCACATTGTCC+AGG 0.471897 7_4:-19311035 Msa1143600:CDS
TTGAAAGGGAAAGGGTTTGA+AGG 0.473454 7_4:-19307744 Msa1143600:three_prime_UTR
GAGAGAGGGGTGAAGAGAGG+AGG 0.474698 7_4:+19313117 None:intergenic
AATAATTAGCATCCTGATAA+CGG 0.475753 7_4:+19311779 None:intergenic
TTATTAGTATTCTAGCCAGC+AGG 0.476306 7_4:-19310943 Msa1143600:CDS
GAACTGCAGCAGGAAGGACT+AGG 0.479182 7_4:+19309679 None:intergenic
AATACATAATACCATTATCA+AGG 0.480603 7_4:-19308048 Msa1143600:three_prime_UTR
CTTTGCAGGCAGATAGTATC+CGG 0.480872 7_4:+19310576 None:intergenic
TGTCTACTTCGAAGCTTGCC+TGG 0.482009 7_4:-19308849 Msa1143600:CDS
GACTGTGAAATTGGTAATGC+TGG 0.482168 7_4:+19308582 None:intergenic
AATAATGATGACCATATGGC+TGG 0.487366 7_4:-19310695 Msa1143600:CDS
AGGCTGCCAATAAAGCATTC+CGG 0.489161 7_4:-19310595 Msa1143600:CDS
TTGCAGGTTCTTTGTGCTGT+CGG 0.490846 7_4:-19311426 Msa1143600:intron
AGAGAGAGAGGGGTGAAGAG+AGG 0.491122 7_4:+19313114 None:intergenic
TTGTCAAATATCACATCTCC+AGG 0.496388 7_4:+19308831 None:intergenic
GATCAATAATGATGACCATA+TGG 0.500339 7_4:-19310699 Msa1143600:CDS
TGTGCAGGTTGTAATTCTGC+TGG 0.503503 7_4:-19308381 Msa1143600:intron
GTTTACCCATTACTTTAGGA+TGG 0.508405 7_4:-19307786 Msa1143600:three_prime_UTR
AGCAAAGGACACGCGGAAGG+GGG 0.510132 7_4:+19308199 None:intergenic
TCATATCTGGAAGGAAAACT+AGG 0.510421 7_4:+19311193 None:intergenic
TGTGTTTAATGAACTGCAGC+AGG 0.511944 7_4:+19309669 None:intergenic
CTCTAAACAATTATCAATTG+AGG 0.512399 7_4:-19310615 Msa1143600:CDS
AAAGTAGCATCATCCTTCAC+AGG 0.514850 7_4:+19310854 None:intergenic
AGTGTGGCATCCATAATTGC+AGG 0.514941 7_4:+19310746 None:intergenic
CTGGTAGTGAAAAGTTTACA+GGG 0.517012 7_4:+19311149 None:intergenic
AGGATCCATATGTGCTGTGA+AGG 0.520080 7_4:-19308140 Msa1143600:three_prime_UTR
CAAGCAAAGGACACGCGGAA+GGG 0.521362 7_4:+19308197 None:intergenic
GCAAAGGACACGCGGAAGGG+GGG 0.523324 7_4:+19308200 None:intergenic
ATATTTCCATCCTAAAGTAA+TGG 0.525757 7_4:+19307780 None:intergenic
AAATGAAGATGATGAGGGCC+AGG 0.525895 7_4:+19308758 None:intergenic
AGCTTAATCCACATTGTCCA+GGG 0.527714 7_4:-19311034 Msa1143600:CDS
AGGATGGAAATATTTGGATG+AGG 0.528141 7_4:-19307770 Msa1143600:three_prime_UTR
ATTTCTTGCTAAAGAAACCC+TGG 0.528607 7_4:+19311017 None:intergenic
AACTGCAGCAGGAAGGACTA+GGG 0.528868 7_4:+19309680 None:intergenic
ATCTATGTTACGCGGAGGTG+GGG 0.529380 7_4:-19309575 Msa1143600:CDS
TCTCTATCACTCTGTGCACC+TGG 0.531678 7_4:-19308732 Msa1143600:intron
GATGGAGCCAACTATGACCT+CGG 0.532970 7_4:+19311892 None:intergenic
TTTCAAAGTGCCAATGGTGT+GGG 0.535740 7_4:-19308272 Msa1143600:three_prime_UTR
ATTTCAAAGTGCCAATGGTG+TGG 0.538868 7_4:-19308273 Msa1143600:three_prime_UTR
AACATATTACATTCCCTACA+AGG 0.546364 7_4:+19311071 None:intergenic
GATTATCTAAATGATTGTAA+AGG 0.546518 7_4:-19310656 Msa1143600:CDS
GGTTGTAATTCTGCTGGAGT+GGG 0.548039 7_4:-19308375 Msa1143600:CDS
ACATGCAAAACCCACACCAT+TGG 0.548797 7_4:+19308262 None:intergenic
TGATTTAATGGAACAAAGTG+TGG 0.550287 7_4:+19310901 None:intergenic
AATCATCTAACTTTACAGGC+AGG 0.556495 7_4:-19310883 Msa1143600:CDS
AGTCCAGTGTCTCCAGAAGT+AGG 0.557488 7_4:+19311298 None:intergenic
AAACTAGGAATAGGATACAT+TGG 0.563403 7_4:+19311208 None:intergenic
TTGGAGTCCGAGGTCATAGT+TGG 0.566240 7_4:-19311899 Msa1143600:five_prime_UTR
TATTAGTATTCTAGCCAGCA+GGG 0.567822 7_4:-19310942 Msa1143600:CDS
ATAATGATGACCATATGGCT+GGG 0.570866 7_4:-19310694 Msa1143600:CDS
AATAAAATAAGCACTAACTC+AGG 0.573989 7_4:+19308164 None:intergenic
CATTAAACACATATATTGCA+GGG 0.575822 7_4:-19309657 Msa1143600:CDS
ATACATTGGTGGGCCAGACT+CGG 0.579184 7_4:+19311222 None:intergenic
GGATCCATATGTGCTGTGAA+GGG 0.581090 7_4:-19308139 Msa1143600:three_prime_UTR
AGATGTAAATGAAGATGATG+AGG 0.582125 7_4:+19308752 None:intergenic
CATACAGCAATTACATCTGT+AGG 0.582142 7_4:+19309718 None:intergenic
TTTACAGAAGTTCACTCCAA+CGG 0.582788 7_4:+19307835 None:intergenic
AGGTTGTAATTCTGCTGGAG+TGG 0.584237 7_4:-19308376 Msa1143600:CDS
TCACTCTCTCTCCTCTTACA+CGG 0.589894 7_4:-19312987 Msa1143600:intron
AGGCAGGTCATGCCCTGTGA+AGG 0.593141 7_4:-19310867 Msa1143600:CDS
GAACCTACTTCTGGAGACAC+TGG 0.596574 7_4:-19311301 Msa1143600:CDS
GTAGGCTCCGTAAAAGTCAA+AGG 0.597054 7_4:+19309736 None:intergenic
TAATGATGACCATATGGCTG+GGG 0.597575 7_4:-19310693 Msa1143600:CDS
ACAAGCAAAGGACACGCGGA+AGG 0.602034 7_4:+19308196 None:intergenic
GATGTAAATGAAGATGATGA+GGG 0.602047 7_4:+19308753 None:intergenic
CAAACGGCCGCACATAGAGA+TGG 0.602127 7_4:+19311874 None:intergenic
ATAATACCATTATCAAGGGT+CGG 0.604303 7_4:-19308043 Msa1143600:intron
AAGGCATTTCAAAGTGCCAA+TGG 0.607015 7_4:-19308278 Msa1143600:three_prime_UTR
GAAAGAGAAAAGAGTTGCGG+TGG 0.607432 7_4:+19313008 None:intergenic
TTAGTATTCTAGCCAGCAGG+GGG 0.607641 7_4:-19310940 Msa1143600:CDS
TAACACAAGCAAATTAGTTG+AGG 0.608537 7_4:-19310819 Msa1143600:CDS
GATCTTAAGCTTGGAGTCCG+AGG 0.609144 7_4:-19311909 Msa1143600:five_prime_UTR
ACTATATTATACAAGACTTG+TGG 0.612196 7_4:+19307858 None:intergenic
AGGCATGATCATACAAGCAA+AGG 0.612362 7_4:+19308184 None:intergenic
GATGCCCGTGAAAAGCCAAA+CGG 0.616772 7_4:+19311858 None:intergenic
ATACATAATACCATTATCAA+GGG 0.617288 7_4:-19308047 Msa1143600:three_prime_UTR
AGTGAAAGAGAAAAGAGTTG+CGG 0.618330 7_4:+19313005 None:intergenic
CTAGGAATAGGATACATTGG+TGG 0.625015 7_4:+19311211 None:intergenic
AAAACTGGTTCATATCTGGA+AGG 0.627199 7_4:+19311184 None:intergenic
CATTGGTGGGCCAGACTCGG+TGG 0.629766 7_4:+19311225 None:intergenic
GGAACTTTAGGTATGACAGC+AGG 0.632437 7_4:+19311253 None:intergenic
TTTAATGAACTGCAGCAGGA+AGG 0.635194 7_4:+19309673 None:intergenic
TCTTGTATAATATAGTCCGT+TGG 0.635571 7_4:-19307851 Msa1143600:three_prime_UTR
ATTAGTATTCTAGCCAGCAG+GGG 0.636003 7_4:-19310941 Msa1143600:CDS
ATGACAATATTCCTGCACCC+TGG 0.639884 7_4:-19308776 Msa1143600:CDS
AATCAAATGCTGTTCTATCG+AGG 0.642454 7_4:+19311113 None:intergenic
ATTGGTGGGCCAGACTCGGT+GGG 0.645667 7_4:+19311226 None:intergenic
GTTGGCTCCATCTCTATGTG+CGG 0.646659 7_4:-19311881 Msa1143600:five_prime_UTR
CAATTTGGATCTATGTTACG+CGG 0.649062 7_4:-19309583 Msa1143600:CDS
TAGGAATAGGATACATTGGT+GGG 0.655383 7_4:+19311212 None:intergenic
TGGATTAAGCTACTAAACTG+TGG 0.656377 7_4:+19311046 None:intergenic
AAGTAGCATCATCCTTCACA+GGG 0.661738 7_4:+19310855 None:intergenic
TAAAGAAACCCTGGACAATG+TGG 0.670707 7_4:+19311026 None:intergenic
ACATATTACATTCCCTACAA+GGG 0.676256 7_4:+19311072 None:intergenic
TCATACAAGCAAAGGACACG+CGG 0.684612 7_4:+19308192 None:intergenic
AAGGATGCTGCTATACAATG+AGG 0.685915 7_4:+19308225 None:intergenic
TCTGCCTGCAAAGTCAACAA+AGG 0.690004 7_4:-19310566 Msa1143600:intron
TTTGGATCTATGTTACGCGG+AGG 0.690805 7_4:-19309580 Msa1143600:CDS
AATGAAGATGATGAGGGCCA+GGG 0.698662 7_4:+19308759 None:intergenic
TTCCCTACAAGGGATGCCAA+AGG 0.700314 7_4:+19311082 None:intergenic
ACTGCAGCAGGAAGGACTAG+GGG 0.711004 7_4:+19309681 None:intergenic
GGTTGTTGTGAAGAATGGAT+CGG 0.712651 7_4:+19313029 None:intergenic
TCTGCCAGAAATCTGAAGTG+TGG 0.732002 7_4:+19310730 None:intergenic
TAGTATTCTAGCCAGCAGGG+GGG 0.756612 7_4:-19310939 Msa1143600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTAAATCTAAATTTT+CGG - chr7_4:19308090-19308109 Msa1143600:three_prime_UTR 10.0%
!!! CTTTTAATATTATATAACAA+TGG - chr7_4:19310347-19310366 Msa1143600:intron 10.0%
!! TATTATTTAAAAATGTGTAT+AGG + chr7_4:19310889-19310908 None:intergenic 10.0%
!!! CATTTAATTTCATTTTATAT+GGG + chr7_4:19310929-19310948 None:intergenic 10.0%
!!! ACATTTAATTTCATTTTATA+TGG + chr7_4:19310930-19310949 None:intergenic 10.0%
!! AATTAAATTATAAAAATACG+TGG + chr7_4:19311726-19311745 None:intergenic 10.0%
!! ATAGAGAAAAATAAATAAAA+TGG + chr7_4:19312315-19312334 None:intergenic 10.0%
!!! ATTGTTAAATCTAAATTTTC+GGG - chr7_4:19308091-19308110 Msa1143600:three_prime_UTR 15.0%
!!! GATTCATGATTATTTATTTT+AGG - chr7_4:19309127-19309146 Msa1143600:intron 15.0%
!! TAATATTATATTGCAATTAG+AGG - chr7_4:19310314-19310333 Msa1143600:intron 15.0%
!! AATATTACCATAAAGAAATT+AGG + chr7_4:19310607-19310626 None:intergenic 15.0%
!! TCATTAGTAAATATTACAAT+TGG - chr7_4:19310678-19310697 Msa1143600:CDS 15.0%
!! TACTATTTAAATACTTATCA+TGG + chr7_4:19311006-19311025 None:intergenic 15.0%
!! ATATATGTTATAACAATCAT+TGG - chr7_4:19311538-19311557 Msa1143600:intron 15.0%
!!! TTTTAGTAAAATAATACAGT+AGG - chr7_4:19311601-19311620 Msa1143600:intron 15.0%
!! AAAAATAAATAAAATGGAAC+TGG + chr7_4:19312309-19312328 None:intergenic 15.0%
!! ATTCACATTATTTAAATACT+TGG - chr7_4:19312372-19312391 Msa1143600:intron 15.0%
!! TTCACATTATTTAAATACTT+GGG - chr7_4:19312373-19312392 Msa1143600:intron 15.0%
!!! TTTGCATGTATATTTTTTAA+CGG - chr7_4:19312585-19312604 Msa1143600:intron 15.0%
!! TCGAATCAATAAAAAAAAAA+TGG - chr7_4:19312875-19312894 Msa1143600:intron 15.0%
!! AAAAAAAAAATGGCAATTAA+AGG - chr7_4:19312885-19312904 Msa1143600:intron 15.0%
!! AAAAAAAAATGGCAATTAAA+GGG - chr7_4:19312886-19312905 Msa1143600:intron 15.0%
!!! AATTTTCGATTATGTAACAT+TGG - chr7_4:19307946-19307965 Msa1143600:three_prime_UTR 20.0%
!! ATATATAGTAGCTACTAAAA+TGG - chr7_4:19308132-19308151 Msa1143600:three_prime_UTR 20.0%
!! AAACAAAGCATAAGTATTTA+GGG + chr7_4:19308235-19308254 None:intergenic 20.0%
!! ATGCTTAAGTATATTTATGT+TGG - chr7_4:19308739-19308758 Msa1143600:CDS 20.0%
!! ATAACACATATTACCATAAT+CGG + chr7_4:19309211-19309230 None:intergenic 20.0%
!!! TTCATGTATCAAGAAATTTT+CGG - chr7_4:19309266-19309285 Msa1143600:intron 20.0%
!! TGTAAAGTTAGATGATTTAA+TGG + chr7_4:19309947-19309966 None:intergenic 20.0%
!! ATTAAATCATCTAACTTTAC+AGG - chr7_4:19309946-19309965 Msa1143600:intron 20.0%
!! GATTATCTAAATGATTGTAA+AGG - chr7_4:19310177-19310196 Msa1143600:intron 20.0%
!! TGAAATTAGGTATATTCATT+AGG + chr7_4:19310567-19310586 None:intergenic 20.0%
!!! TTCATTAGTAAGTTGAAATT+AGG + chr7_4:19310580-19310599 None:intergenic 20.0%
!! GAATATACCTAATTTCTTTA+TGG - chr7_4:19310597-19310616 Msa1143600:CDS 20.0%
!! TAATGACTTGATACTAATTA+GGG + chr7_4:19310483-19310502 None:intergenic 20.0%
!! TGTTGTATTGAAAATTGAAA+AGG - chr7_4:19310716-19310735 Msa1143600:CDS 20.0%
!! ATTATTCAATAGAAAAGAGT+TGG - chr7_4:19310819-19310838 Msa1143600:CDS 20.0%
!! TTATTCAATAGAAAAGAGTT+GGG - chr7_4:19310820-19310839 Msa1143600:CDS 20.0%
!!! ACATATTATAGCTTGTTTAT+TGG + chr7_4:19311224-19311243 None:intergenic 20.0%
!!! AAACTAGAGATAATTTTCAA+TGG - chr7_4:19311790-19311809 Msa1143600:exon 20.0%
!!! ATTTTCATTTTTCATCAGTA+CGG - chr7_4:19312496-19312515 Msa1143600:intron 20.0%
!!! AGTTAGTGCTTATTTTATTT+AGG - chr7_4:19312673-19312692 Msa1143600:intron 20.0%
!!! TTGATAATGGTATTATGTAT+TGG + chr7_4:19312786-19312805 None:intergenic 20.0%
!! AATACATAATACCATTATCA+AGG - chr7_4:19312785-19312804 Msa1143600:intron 20.0%
!! ATACATAATACCATTATCAA+GGG - chr7_4:19312786-19312805 Msa1143600:intron 20.0%
!!! TAAAGCTTGATTTTTCAAAA+TGG - chr7_4:19312843-19312862 Msa1143600:intron 20.0%
!!! AGAAACTCATTTTAAGTATA+AGG - chr7_4:19312940-19312959 Msa1143600:intron 20.0%
!!! GAAACTCATTTTAAGTATAA+GGG - chr7_4:19312941-19312960 Msa1143600:intron 20.0%
!!! CTTTTATTTTTTTGGTTCGA+AGG - chr7_4:19308179-19308198 Msa1143600:three_prime_UTR 25.0%
! CAAACAAAGCATAAGTATTT+AGG + chr7_4:19308236-19308255 None:intergenic 25.0%
!! CTAAATACTTATGCTTTGTT+TGG - chr7_4:19308234-19308253 Msa1143600:three_prime_UTR 25.0%
!!! TAGCTTATTTTCACAAGTTT+TGG + chr7_4:19308371-19308390 None:intergenic 25.0%
! TTATATTAACAGCTTATGAC+AGG + chr7_4:19308549-19308568 None:intergenic 25.0%
!!! ATATTTATGTTGGCCTTTTT+AGG - chr7_4:19308749-19308768 Msa1143600:CDS 25.0%
! ATACCACATAATTCCTAAAA+AGG + chr7_4:19308765-19308784 None:intergenic 25.0%
! AGTTATTAATAGCTATCAGT+TGG - chr7_4:19308847-19308866 Msa1143600:CDS 25.0%
! AATAATTAGCATCCTGATAA+CGG + chr7_4:19309057-19309076 None:intergenic 25.0%
! TAACACATATTACCATAATC+GGG + chr7_4:19309210-19309229 None:intergenic 25.0%
!! ATGGTAATATGTGTTATTGT+TGG - chr7_4:19309214-19309233 Msa1143600:intron 25.0%
!! TGGTAATATGTGTTATTGTT+GGG - chr7_4:19309215-19309234 Msa1143600:intron 25.0%
! TTTAATTCTTCATTAGAGCA+AGG - chr7_4:19309294-19309313 Msa1143600:intron 25.0%
!!! GGTTAATTTTATTTGTCATC+TGG - chr7_4:19309428-19309447 Msa1143600:intron 25.0%
! TAGCAAGAAATCTAAAAATC+TGG - chr7_4:19309828-19309847 Msa1143600:intron 25.0%
! AACATCAGAAAAACAATGTT+CGG + chr7_4:19309872-19309891 None:intergenic 25.0%
! CTCTAAACAATTATCAATTG+AGG - chr7_4:19310218-19310237 Msa1143600:intron 25.0%
! AAGGTACATTGTTTAATATG+AGG - chr7_4:19310286-19310305 Msa1143600:intron 25.0%
! GTAAATATTACATATCTCGA+TGG + chr7_4:19310412-19310431 None:intergenic 25.0%
! CTAATGACTTGATACTAATT+AGG + chr7_4:19310484-19310503 None:intergenic 25.0%
!! ATTGAAAAGGTCATTCATTT+TGG - chr7_4:19310729-19310748 Msa1143600:CDS 25.0%
!! TTGAAAAGGTCATTCATTTT+GGG - chr7_4:19310730-19310749 Msa1143600:CDS 25.0%
! TCATTAAACACATATATTGC+AGG - chr7_4:19311175-19311194 Msa1143600:CDS 25.0%
! CATTAAACACATATATTGCA+GGG - chr7_4:19311176-19311195 Msa1143600:CDS 25.0%
! ATAATATGTGCAACACAATT+TGG - chr7_4:19311235-19311254 Msa1143600:CDS 25.0%
!!! GATATTTCTAGAATGATCAT+AGG + chr7_4:19311379-19311398 None:intergenic 25.0%
!! ATCATTGGTTAAATATGATC+AGG - chr7_4:19311553-19311572 Msa1143600:intron 25.0%
!! GAAAACTTGAGAATTTTCAA+TGG + chr7_4:19311669-19311688 None:intergenic 25.0%
!!! TTAATGGTGGATATTGAAAA+TGG + chr7_4:19311693-19311712 None:intergenic 25.0%
! TGTCTTGCTGAATATAATTA+TGG + chr7_4:19311881-19311900 None:intergenic 25.0%
! TAATTATATTCAGCAAGACA+AGG - chr7_4:19311881-19311900 Msa1143600:five_prime_UTR 25.0%
!!! TAGATGCTTTATTTTTGTCA+AGG - chr7_4:19311912-19311931 Msa1143600:intron 25.0%
! GATTGAATTGTGAGTTAAAT+TGG - chr7_4:19311938-19311957 Msa1143600:intron 25.0%
! TGAGTTAAATTGGTATTTGT+TGG - chr7_4:19311948-19311967 Msa1143600:intron 25.0%
!!! TTGCTTAACTTGTATCTATT+TGG - chr7_4:19312207-19312226 Msa1143600:intron 25.0%
!!! TTTTTCAATGACTGTGAAAT+TGG + chr7_4:19312263-19312282 None:intergenic 25.0%
! AATAAAATAAGCACTAACTC+AGG + chr7_4:19312672-19312691 None:intergenic 25.0%
! ACTTAAAATGAGTTTCTTAG+AGG + chr7_4:19312937-19312956 None:intergenic 25.0%
! ACTATATTATACAAGACTTG+TGG + chr7_4:19312978-19312997 None:intergenic 25.0%
! TATTTCCATCCTAAAGTAAT+GGG + chr7_4:19313055-19313074 None:intergenic 25.0%
! ATATTTCCATCCTAAAGTAA+TGG + chr7_4:19313056-19313075 None:intergenic 25.0%
!!! TACTTTAGGATGGAAATATT+TGG - chr7_4:19313057-19313076 Msa1143600:five_prime_UTR 25.0%
TTAGAATCAGTAAGTGTTAG+TGG + chr7_4:19307917-19307936 None:intergenic 30.0%
GTTTGTATTCAGTGCAAAAA+AGG - chr7_4:19308029-19308048 Msa1143600:intron 30.0%
TACTAAAATGGAGTTTGGTT+GGG - chr7_4:19308144-19308163 Msa1143600:three_prime_UTR 30.0%
! TTTTTCTTTCTTTCCTACAG+TGG - chr7_4:19308204-19308223 Msa1143600:three_prime_UTR 30.0%
! GTGAACTAGTTTAGATACTT+CGG + chr7_4:19308445-19308464 None:intergenic 30.0%
!! TATTCTGAAAAAGCACTACT+AGG - chr7_4:19308782-19308801 Msa1143600:CDS 30.0%
GATAAAAAGCTAGATAGACA+TGG + chr7_4:19308818-19308837 None:intergenic 30.0%
! CTATCAGTTGGTTTATGAAT+TGG - chr7_4:19308859-19308878 Msa1143600:CDS 30.0%
AGTAAAGTTTAGTCTCTGAT+TGG + chr7_4:19308889-19308908 None:intergenic 30.0%
TTAATCACAGATCTTAAGCT+TGG - chr7_4:19308915-19308934 Msa1143600:intron 30.0%
TAAAAACTCAATGTCACCAA+AGG - chr7_4:19309015-19309034 Msa1143600:intron 30.0%
AAAAACTCAATGTCACCAAA+GGG - chr7_4:19309016-19309035 Msa1143600:intron 30.0%
CAGGATGCTAATTATTATAG+AGG - chr7_4:19309061-19309080 Msa1143600:intron 30.0%
TGAATCATGATTCACTTGTA+AGG + chr7_4:19309113-19309132 None:intergenic 30.0%
!! TTGTTTTGTAAACCCGATTA+TGG - chr7_4:19309195-19309214 Msa1143600:intron 30.0%
! GGTAATATGTGTTATTGTTG+GGG - chr7_4:19309216-19309235 Msa1143600:intron 30.0%
! GTAATATGTGTTATTGTTGG+GGG - chr7_4:19309217-19309236 Msa1143600:intron 30.0%
! TAATATGTGTTATTGTTGGG+GGG - chr7_4:19309218-19309237 Msa1143600:intron 30.0%
AAACTAGGAATAGGATACAT+TGG + chr7_4:19309628-19309647 None:intergenic 30.0%
! AGTTAAAACTGGTTCATATC+TGG + chr7_4:19309656-19309675 None:intergenic 30.0%
!! AGATATGAACCAGTTTTAAC+TGG - chr7_4:19309655-19309674 Msa1143600:CDS 30.0%
ACATATTACATTCCCTACAA+GGG + chr7_4:19309764-19309783 None:intergenic 30.0%
AACATATTACATTCCCTACA+AGG + chr7_4:19309765-19309784 None:intergenic 30.0%
TGATTTAATGGAACAAAGTG+TGG + chr7_4:19309935-19309954 None:intergenic 30.0%
!!! TGATGCTACTTTTGAAAGAA+CGG - chr7_4:19309990-19310009 Msa1143600:intron 30.0%
TAACACAAGCAAATTAGTTG+AGG - chr7_4:19310014-19310033 Msa1143600:intron 30.0%
GATCAATAATGATGACCATA+TGG - chr7_4:19310134-19310153 Msa1143600:intron 30.0%
AATGACTTGATACAAAAGAC+TGG - chr7_4:19310433-19310452 Msa1143600:intron 30.0%
GTCATTAGTACCAAGAAATT+AGG - chr7_4:19310496-19310515 Msa1143600:intron 30.0%
ATACCTGATACCTAATTTCT+TGG + chr7_4:19310509-19310528 None:intergenic 30.0%
TATCAGGTATCAAGTCATTA+TGG - chr7_4:19310519-19310538 Msa1143600:intron 30.0%
! TGAAAAGGTCATTCATTTTG+GGG - chr7_4:19310731-19310750 Msa1143600:CDS 30.0%
GGCAATTTCTTTATGCAAAT+AGG - chr7_4:19310752-19310771 Msa1143600:CDS 30.0%
!!! GTTAGTCATTTTGAGACATA+GGG - chr7_4:19310774-19310793 Msa1143600:CDS 30.0%
GTCTTGGTACAAAAAAGAAA+AGG + chr7_4:19310849-19310868 None:intergenic 30.0%
!! AGTTTGTCCTTTGACTTTTA+CGG - chr7_4:19311090-19311109 Msa1143600:CDS 30.0%
TTGAAAGATTTCAGCATACA+AGG - chr7_4:19311316-19311335 Msa1143600:CDS 30.0%
! ACTTGAGAATTTTCAATGGA+GGG + chr7_4:19311665-19311684 None:intergenic 30.0%
! AACTTGAGAATTTTCAATGG+AGG + chr7_4:19311666-19311685 None:intergenic 30.0%
!!! TGGTTGTTGTATTTTAATGG+TGG + chr7_4:19311706-19311725 None:intergenic 30.0%
!! ACGTGGTTGTTGTATTTTAA+TGG + chr7_4:19311709-19311728 None:intergenic 30.0%
ACTTTCTCTCTTATGTTTGA+TGG - chr7_4:19311749-19311768 Msa1143600:intron 30.0%
!!! TTATCTCTAGTTTTCTCAAG+TGG + chr7_4:19311783-19311802 None:intergenic 30.0%
ATCCAAATGTATCCCATATA+CGG + chr7_4:19311829-19311848 None:intergenic 30.0%
CTTGCTGAATATAATTATGG+AGG + chr7_4:19311878-19311897 None:intergenic 30.0%
!! GTATTTGTTGGTTTAGATGT+AGG - chr7_4:19311960-19311979 Msa1143600:intron 30.0%
GTGATATTTGACAATTCAAC+AGG - chr7_4:19312011-19312030 Msa1143600:intron 30.0%
GATGTAAATGAAGATGATGA+GGG + chr7_4:19312083-19312102 None:intergenic 30.0%
AGATGTAAATGAAGATGATG+AGG + chr7_4:19312084-19312103 None:intergenic 30.0%
TCACAGTCATTGAAAAACAT+TGG - chr7_4:19312266-19312285 Msa1143600:intron 30.0%
TCTATGAATTAATACCATCC+AGG - chr7_4:19312330-19312349 Msa1143600:intron 30.0%
TCAATATTGACCCATGAATA+TGG - chr7_4:19312424-19312443 Msa1143600:intron 30.0%
ATAATACCATTATCAAGGGT+CGG - chr7_4:19312790-19312809 Msa1143600:intron 30.0%
!! TGGCAATTAAAGGGTTTTAT+TGG - chr7_4:19312895-19312914 Msa1143600:intron 30.0%
! TTTTATTGGTAGAGACAATC+TGG - chr7_4:19312909-19312928 Msa1143600:intron 30.0%
TCTTGTATAATATAGTCCGT+TGG - chr7_4:19312982-19313001 Msa1143600:intron 30.0%
TTGTGTTTACCCATTACTTT+AGG - chr7_4:19313043-19313062 Msa1143600:five_prime_UTR 30.0%
! ATTTGGATGAGGATTTTGAA+AGG - chr7_4:19313074-19313093 Msa1143600:five_prime_UTR 30.0%
!! TTTGGATGAGGATTTTGAAA+GGG - chr7_4:19313075-19313094 Msa1143600:five_prime_UTR 30.0%
TCACTGTTATTCTCCGATTA+GGG - chr7_4:19307771-19307790 Msa1143600:three_prime_UTR 35.0%
AGTGAAAGAGAAAAGAGTTG+CGG + chr7_4:19307831-19307850 None:intergenic 35.0%
!!! TCTCTAACCGCTTTTAACTT+TGG - chr7_4:19307886-19307905 Msa1143600:three_prime_UTR 35.0%
GGTAGAACCAAAGTTAAAAG+CGG + chr7_4:19307896-19307915 None:intergenic 35.0%
GTAGCTACTAAAATGGAGTT+TGG - chr7_4:19308139-19308158 Msa1143600:three_prime_UTR 35.0%
CTACTAAAATGGAGTTTGGT+TGG - chr7_4:19308143-19308162 Msa1143600:three_prime_UTR 35.0%
CTAAACTAGTTCACCCAAAT+TGG - chr7_4:19308451-19308470 Msa1143600:intron 35.0%
TGTTACTAGAGGTTAACTAC+TGG + chr7_4:19308603-19308622 None:intergenic 35.0%
TCACAACAAAGGATCTGTTT+GGG + chr7_4:19308631-19308650 None:intergenic 35.0%
TTCACAACAAAGGATCTGTT+TGG + chr7_4:19308632-19308651 None:intergenic 35.0%
GTCAATGTTCTTCACAACAA+AGG + chr7_4:19308642-19308661 None:intergenic 35.0%
!! TGGCCTTTTTAGGAATTATG+TGG - chr7_4:19308759-19308778 Msa1143600:CDS 35.0%
AGCTCTGTTTAAATTGTTGC+AGG - chr7_4:19309391-19309410 Msa1143600:intron 35.0%
! ACAGCAGGTGATATTTCTAT+AGG + chr7_4:19309568-19309587 None:intergenic 35.0%
TAGGAATAGGATACATTGGT+GGG + chr7_4:19309624-19309643 None:intergenic 35.0%
TCATATCTGGAAGGAAAACT+AGG + chr7_4:19309643-19309662 None:intergenic 35.0%
! AAAACTGGTTCATATCTGGA+AGG + chr7_4:19309652-19309671 None:intergenic 35.0%
! CTGGTAGTGAAAAGTTTACA+GGG + chr7_4:19309687-19309706 None:intergenic 35.0%
! TCTGGTAGTGAAAAGTTTAC+AGG + chr7_4:19309688-19309707 None:intergenic 35.0%
TCGAGGATATCTGATATTTC+TGG + chr7_4:19309706-19309725 None:intergenic 35.0%
AATCAAATGCTGTTCTATCG+AGG + chr7_4:19309723-19309742 None:intergenic 35.0%
TGGATTAAGCTACTAAACTG+TGG + chr7_4:19309790-19309809 None:intergenic 35.0%
ATTTCTTGCTAAAGAAACCC+TGG + chr7_4:19309819-19309838 None:intergenic 35.0%
TTATTAGTATTCTAGCCAGC+AGG - chr7_4:19309890-19309909 Msa1143600:intron 35.0%
TATTAGTATTCTAGCCAGCA+GGG - chr7_4:19309891-19309910 Msa1143600:intron 35.0%
AATCATCTAACTTTACAGGC+AGG - chr7_4:19309950-19309969 Msa1143600:intron 35.0%
AATAATGATGACCATATGGC+TGG - chr7_4:19310138-19310157 Msa1143600:intron 35.0%
ATAATGATGACCATATGGCT+GGG - chr7_4:19310139-19310158 Msa1143600:intron 35.0%
TAGTATCCGGAATGCTTTAT+TGG + chr7_4:19310247-19310266 None:intergenic 35.0%
ATTACATATCTCGATGGTCT+TGG + chr7_4:19310406-19310425 None:intergenic 35.0%
GTACCAAGAAATTAGGTATC+AGG - chr7_4:19310503-19310522 Msa1143600:intron 35.0%
!!! GGTTAGTCATTTTGAGACAT+AGG - chr7_4:19310773-19310792 Msa1143600:CDS 35.0%
TGTGAGTTACTATACAGTCT+TGG + chr7_4:19310865-19310884 None:intergenic 35.0%
ATTGTTTGATGCACATGCTA+AGG + chr7_4:19310956-19310975 None:intergenic 35.0%
CATACAGCAATTACATCTGT+AGG + chr7_4:19311118-19311137 None:intergenic 35.0%
CAATTTGGATCTATGTTACG+CGG - chr7_4:19311250-19311269 Msa1143600:CDS 35.0%
!! TATTTTGTTGTGACTTCGCA+TGG - chr7_4:19311410-19311429 Msa1143600:CDS 35.0%
TAATCTTCTCTCATGAGACT+TGG - chr7_4:19311513-19311532 Msa1143600:intron 35.0%
AATCTTCTCTCATGAGACTT+GGG - chr7_4:19311514-19311533 Msa1143600:intron 35.0%
!!! TAGGTTTTGTTAGTAGAACC+TGG - chr7_4:19311620-19311639 Msa1143600:intron 35.0%
TGTTAGTAGAACCTGGTATT+TGG - chr7_4:19311627-19311646 Msa1143600:intron 35.0%
GTTAGTAGAACCTGGTATTT+GGG - chr7_4:19311628-19311647 Msa1143600:intron 35.0%
TTAGTAGAACCTGGTATTTG+GGG - chr7_4:19311629-19311648 Msa1143600:intron 35.0%
! TCTCTCTTATGTTTGATGGT+TGG - chr7_4:19311753-19311772 Msa1143600:intron 35.0%
! CTCTCTTATGTTTGATGGTT+GGG - chr7_4:19311754-19311773 Msa1143600:intron 35.0%
ATGTATCCCATATACGGATT+CGG + chr7_4:19311823-19311842 None:intergenic 35.0%
ATCCGTATATGGGATACATT+TGG - chr7_4:19311824-19311843 Msa1143600:five_prime_UTR 35.0%
TTGTCAAATATCACATCTCC+AGG + chr7_4:19312005-19312024 None:intergenic 35.0%
AAATGGAACTGGAACCAAAA+CGG + chr7_4:19312298-19312317 None:intergenic 35.0%
! AATACTTGGGCCACAAATTT+TGG - chr7_4:19312386-19312405 Msa1143600:intron 35.0%
ATATTGACCCATGAATATGG+TGG - chr7_4:19312427-19312446 Msa1143600:intron 35.0%
! TACGGTTGTACTGAGATTTT+AGG - chr7_4:19312514-19312533 Msa1143600:intron 35.0%
TGCTAACTTTGATACTTGCT+TGG + chr7_4:19312747-19312766 None:intergenic 35.0%
CTCGAATCAACATATCATCT+TGG + chr7_4:19312820-19312839 None:intergenic 35.0%
!! AGATGATATGTTGATTCGAG+CGG - chr7_4:19312820-19312839 Msa1143600:intron 35.0%
TTTACAGAAGTTCACTCCAA+CGG + chr7_4:19313001-19313020 None:intergenic 35.0%
! GTTTACCCATTACTTTAGGA+TGG - chr7_4:19313047-19313066 Msa1143600:five_prime_UTR 35.0%
AGGATGGAAATATTTGGATG+AGG - chr7_4:19313063-19313082 Msa1143600:five_prime_UTR 35.0%
!! ATGAGGATTTTGAAAGGGAA+AGG - chr7_4:19313080-19313099 Msa1143600:five_prime_UTR 35.0%
!! TGAGGATTTTGAAAGGGAAA+GGG - chr7_4:19313081-19313100 Msa1143600:five_prime_UTR 35.0%
CTCACTGTTATTCTCCGATT+AGG - chr7_4:19307770-19307789 Msa1143600:three_prime_UTR 40.0%
CGGAAAATGGAAACCCTAAT+CGG + chr7_4:19307787-19307806 None:intergenic 40.0%
GTGAAGAATGGATCGGAAAA+TGG + chr7_4:19307800-19307819 None:intergenic 40.0%
GGTTGTTGTGAAGAATGGAT+CGG + chr7_4:19307807-19307826 None:intergenic 40.0%
GTTAGAGAGAGAGAAAATCG+CGG + chr7_4:19307874-19307893 None:intergenic 40.0%
ATTTAGGGATAAGCCACTGT+AGG + chr7_4:19308220-19308239 None:intergenic 40.0%
TTCTGCTGTAAGCTGCAAAT+AGG + chr7_4:19308268-19308287 None:intergenic 40.0%
ATTCTCCACTGTGCCAATTT+GGG + chr7_4:19308467-19308486 None:intergenic 40.0%
GAATCGAACATGAGACCTTA+AGG - chr7_4:19308483-19308502 Msa1143600:intron 40.0%
TTTGGGAAGGATGTTACTAG+AGG + chr7_4:19308614-19308633 None:intergenic 40.0%
AACAAAGGATCTGTTTGGGA+AGG + chr7_4:19308627-19308646 None:intergenic 40.0%
ACCAAAGGGCTAGAAAGTTA+TGG - chr7_4:19309030-19309049 Msa1143600:intron 40.0%
CCAAAGGGCTAGAAAGTTAT+GGG - chr7_4:19309031-19309050 Msa1143600:intron 40.0%
AGAGGTAAGCACTAGTAGTA+TGG - chr7_4:19309079-19309098 Msa1143600:intron 40.0%
GGCACATGTGTACAAATTGT+TGG - chr7_4:19309315-19309334 Msa1143600:intron 40.0%
GCTGTCACATCTAGGAAATT+AGG + chr7_4:19309457-19309476 None:intergenic 40.0%
TTAGCTAGTGAACCTACTTC+TGG - chr7_4:19309523-19309542 Msa1143600:CDS 40.0%
CTAGGAATAGGATACATTGG+TGG + chr7_4:19309625-19309644 None:intergenic 40.0%
CTGGAAGGAAAACTAGGAAT+AGG + chr7_4:19309637-19309656 None:intergenic 40.0%
GGGCATTTACCAGTTAAAAC+TGG + chr7_4:19309667-19309686 None:intergenic 40.0%
ATTTGATTGCGCTGTACCTT+TGG - chr7_4:19309735-19309754 Msa1143600:CDS 40.0%
TAGCTTAATCCACATTGTCC+AGG - chr7_4:19309798-19309817 Msa1143600:intron 40.0%
AGCTTAATCCACATTGTCCA+GGG - chr7_4:19309799-19309818 Msa1143600:intron 40.0%
TAAAGAAACCCTGGACAATG+TGG + chr7_4:19309810-19309829 None:intergenic 40.0%
ATTAGTATTCTAGCCAGCAG+GGG - chr7_4:19309892-19309911 Msa1143600:intron 40.0%
AAGTAGCATCATCCTTCACA+GGG + chr7_4:19309981-19310000 None:intergenic 40.0%
AAAGTAGCATCATCCTTCAC+AGG + chr7_4:19309982-19310001 None:intergenic 40.0%
ATAATTGCAGGCTGACAAAC+AGG + chr7_4:19310078-19310097 None:intergenic 40.0%
TGTTTGTCAGCCTGCAATTA+TGG - chr7_4:19310077-19310096 Msa1143600:intron 40.0%
TAATGATGACCATATGGCTG+GGG - chr7_4:19310140-19310159 Msa1143600:intron 40.0%
!! TGTACCTTTGTTGACTTTGC+AGG + chr7_4:19310274-19310293 None:intergenic 40.0%
TTTAATGAACTGCAGCAGGA+AGG + chr7_4:19311163-19311182 None:intergenic 40.0%
TGTGTTTAATGAACTGCAGC+AGG + chr7_4:19311167-19311186 None:intergenic 40.0%
ACAGCAATCGACAAAATGCA+AGG + chr7_4:19311479-19311498 None:intergenic 40.0%
TAGTAGAACCTGGTATTTGG+GGG - chr7_4:19311630-19311649 Msa1143600:intron 40.0%
AGAGAAACCGAATCCGTATA+TGG - chr7_4:19311813-19311832 Msa1143600:five_prime_UTR 40.0%
GAGAAACCGAATCCGTATAT+GGG - chr7_4:19311814-19311833 Msa1143600:five_prime_UTR 40.0%
ACTTTGTCCAAAGTCATACC+AGG + chr7_4:19312122-19312141 None:intergenic 40.0%
!! GACTGTGAAATTGGTAATGC+TGG + chr7_4:19312254-19312273 None:intergenic 40.0%
TAATTAATCAGCTGACAGCC+TGG + chr7_4:19312351-19312370 None:intergenic 40.0%
GTCAATATTGAATCCCACAC+AGG + chr7_4:19312415-19312434 None:intergenic 40.0%
GCACAATCCACCATATTCAT+GGG + chr7_4:19312437-19312456 None:intergenic 40.0%
TGCACAATCCACCATATTCA+TGG + chr7_4:19312438-19312457 None:intergenic 40.0%
!! ATGAATATGGTGGATTGTGC+AGG - chr7_4:19312437-19312456 Msa1143600:intron 40.0%
!!! TTAGGATTTTGAAGTGTGCC+AGG - chr7_4:19312532-19312551 Msa1143600:intron 40.0%
! AAGGCATTTCAAAGTGCCAA+TGG - chr7_4:19312555-19312574 Msa1143600:intron 40.0%
! ATTTCAAAGTGCCAATGGTG+TGG - chr7_4:19312560-19312579 Msa1143600:intron 40.0%
! TTTCAAAGTGCCAATGGTGT+GGG - chr7_4:19312561-19312580 Msa1143600:intron 40.0%
AAGGATGCTGCTATACAATG+AGG + chr7_4:19312611-19312630 None:intergenic 40.0%
AGGCATGATCATACAAGCAA+AGG + chr7_4:19312652-19312671 None:intergenic 40.0%
TTGAAAGGGAAAGGGTTTGA+AGG - chr7_4:19313089-19313108 Msa1143600:five_prime_UTR 40.0%
GAAAGAGAAAAGAGTTGCGG+TGG + chr7_4:19307828-19307847 None:intergenic 45.0%
TCACTCTCTCTCCTCTTACA+CGG - chr7_4:19307846-19307865 Msa1143600:three_prime_UTR 45.0%
GATTCTCCACTGTGCCAATT+TGG + chr7_4:19308468-19308487 None:intergenic 45.0%
! TTGGAGTGTGCTACTCCTTA+AGG + chr7_4:19308501-19308520 None:intergenic 45.0%
TTAAGGAGTAGCACACTCCA+AGG - chr7_4:19308500-19308519 Msa1143600:intron 45.0%
CTTATGACAGGAACCCACTT+GGG + chr7_4:19308537-19308556 None:intergenic 45.0%
! GCTTTTCACGGGCATCAATT+TGG - chr7_4:19308982-19309001 Msa1143600:intron 45.0%
! CCCATAACTTTCTAGCCCTT+TGG + chr7_4:19309034-19309053 None:intergenic 45.0%
GAAAGTTATGGGCCGTTATC+AGG - chr7_4:19309042-19309061 Msa1143600:intron 45.0%
TTGCAGGTTCTTTGTGCTGT+CGG - chr7_4:19309407-19309426 Msa1143600:intron 45.0%
CTTCTTGTGCTGTCACATCT+AGG + chr7_4:19309465-19309484 None:intergenic 45.0%
CCAGAGAAGTAGTTCGCTTA+TGG + chr7_4:19309498-19309517 None:intergenic 45.0%
CCATAAGCGAACTACTTCTC+TGG - chr7_4:19309495-19309514 Msa1143600:intron 45.0%
GGAACTTTAGGTATGACAGC+AGG + chr7_4:19309583-19309602 None:intergenic 45.0%
TACCTTTGGCATCCCTTGTA+GGG - chr7_4:19309749-19309768 Msa1143600:CDS 45.0%
CAATGTTCGGCGACTGTATT+TGG + chr7_4:19309859-19309878 None:intergenic 45.0%
TTAGTATTCTAGCCAGCAGG+GGG - chr7_4:19309893-19309912 Msa1143600:intron 45.0%
! TAGTGGATCAACAGTTCTGC+AGG + chr7_4:19310040-19310059 None:intergenic 45.0%
AGTGTGGCATCCATAATTGC+AGG + chr7_4:19310090-19310109 None:intergenic 45.0%
GATGCCACACTTCAGATTTC+TGG - chr7_4:19310099-19310118 Msa1143600:intron 45.0%
! TCTGCCAGAAATCTGAAGTG+TGG + chr7_4:19310106-19310125 None:intergenic 45.0%
GATTCATTTCCCCAGCCATA+TGG + chr7_4:19310152-19310171 None:intergenic 45.0%
! AGGCTGCCAATAAAGCATTC+CGG - chr7_4:19310238-19310257 Msa1143600:intron 45.0%
CTTTGCAGGCAGATAGTATC+CGG + chr7_4:19310260-19310279 None:intergenic 45.0%
TCTGCCTGCAAAGTCAACAA+AGG - chr7_4:19310267-19310286 Msa1143600:intron 45.0%
GTAGGCTCCGTAAAAGTCAA+AGG + chr7_4:19311100-19311119 None:intergenic 45.0%
TTTGGATCTATGTTACGCGG+AGG - chr7_4:19311253-19311272 Msa1143600:CDS 45.0%
AGTAGAACCTGGTATTTGGG+GGG - chr7_4:19311631-19311650 Msa1143600:intron 45.0%
ATGACAATATTCCTGCACCC+TGG - chr7_4:19312057-19312076 Msa1143600:intron 45.0%
AATGAAGATGATGAGGGCCA+GGG + chr7_4:19312077-19312096 None:intergenic 45.0%
AAATGAAGATGATGAGGGCC+AGG + chr7_4:19312078-19312097 None:intergenic 45.0%
ACACAGGCAGCCAAAATTTG+TGG + chr7_4:19312399-19312418 None:intergenic 45.0%
!!! ACAAATTTTGGCTGCCTGTG+TGG - chr7_4:19312398-19312417 Msa1143600:intron 45.0%
!!! CAAATTTTGGCTGCCTGTGT+GGG - chr7_4:19312399-19312418 Msa1143600:intron 45.0%
TGTGCAGGTTGTAATTCTGC+TGG - chr7_4:19312452-19312471 Msa1143600:intron 45.0%
AGGTTGTAATTCTGCTGGAG+TGG - chr7_4:19312457-19312476 Msa1143600:intron 45.0%
GGTTGTAATTCTGCTGGAGT+GGG - chr7_4:19312458-19312477 Msa1143600:intron 45.0%
!!! GATTTTGAAGTGTGCCAGGA+AGG - chr7_4:19312536-19312555 Msa1143600:intron 45.0%
ACATGCAAAACCCACACCAT+TGG + chr7_4:19312574-19312593 None:intergenic 45.0%
TCATACAAGCAAAGGACACG+CGG + chr7_4:19312644-19312663 None:intergenic 45.0%
AGGATCCATATGTGCTGTGA+AGG - chr7_4:19312693-19312712 Msa1143600:intron 45.0%
GGATCCATATGTGCTGTGAA+GGG - chr7_4:19312694-19312713 Msa1143600:intron 45.0%
!!! TTAATTATCTTTTATTTTTT+TGG - chr7_4:19308171-19308190 Msa1143600:three_prime_UTR 5.0%
!! TAAATAATAAAATTTCTTTA+TGG - chr7_4:19310900-19310919 Msa1143600:CDS 5.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr7_4:19307732-19307751 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr7_4:19307733-19307752 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr7_4:19307732-19307751 None:intergenic 50.0%
GCGGTGGTTGTTGTGAAGAA+TGG + chr7_4:19307812-19307831 None:intergenic 50.0%
AAATCGCGGTACCGTGTAAG+AGG + chr7_4:19307860-19307879 None:intergenic 50.0%
GTTCACCCAAATTGGCACAG+TGG - chr7_4:19308459-19308478 Msa1143600:intron 50.0%
GCTTATGACAGGAACCCACT+TGG + chr7_4:19308538-19308557 None:intergenic 50.0%
GATCTTAAGCTTGGAGTCCG+AGG - chr7_4:19308924-19308943 Msa1143600:intron 50.0%
TTGGAGTCCGAGGTCATAGT+TGG - chr7_4:19308934-19308953 Msa1143600:intron 50.0%
GATGGAGCCAACTATGACCT+CGG + chr7_4:19308944-19308963 None:intergenic 50.0%
! GTTGGCTCCATCTCTATGTG+CGG - chr7_4:19308952-19308971 Msa1143600:intron 50.0%
GATGCCCGTGAAAAGCCAAA+CGG + chr7_4:19308978-19308997 None:intergenic 50.0%
! GAACCTACTTCTGGAGACAC+TGG - chr7_4:19309532-19309551 Msa1143600:CDS 50.0%
AGTCCAGTGTCTCCAGAAGT+AGG + chr7_4:19309538-19309557 None:intergenic 50.0%
TCGGTGGGCAATGGAACTTT+AGG + chr7_4:19309595-19309614 None:intergenic 50.0%
! ATACATTGGTGGGCCAGACT+CGG + chr7_4:19309614-19309633 None:intergenic 50.0%
GTACCTTTGGCATCCCTTGT+AGG - chr7_4:19309748-19309767 Msa1143600:CDS 50.0%
TTCCCTACAAGGGATGCCAA+AGG + chr7_4:19309754-19309773 None:intergenic 50.0%
TAGTATTCTAGCCAGCAGGG+GGG - chr7_4:19309894-19309913 Msa1143600:intron 50.0%
! GGTCTGCAGCACTCTTTTAG+TGG + chr7_4:19310057-19310076 None:intergenic 50.0%
AACTGCAGCAGGAAGGACTA+GGG + chr7_4:19311156-19311175 None:intergenic 50.0%
GATCTATGTTACGCGGAGGT+GGG - chr7_4:19311257-19311276 Msa1143600:CDS 50.0%
ATCTATGTTACGCGGAGGTG+GGG - chr7_4:19311258-19311277 Msa1143600:CDS 50.0%
TTGTGACTTCGCATGGTGCT+GGG - chr7_4:19311417-19311436 Msa1143600:CDS 50.0%
AACCTGGTATTTGGGGGGAT+TGG - chr7_4:19311636-19311655 Msa1143600:intron 50.0%
ATCCAATCCCCCCAAATACC+AGG + chr7_4:19311641-19311660 None:intergenic 50.0%
TGTCTACTTCGAAGCTTGCC+TGG - chr7_4:19311984-19312003 Msa1143600:intron 50.0%
TCTCTATCACTCTGTGCACC+TGG - chr7_4:19312101-19312120 Msa1143600:intron 50.0%
CTGTGCACCTGGTATGACTT+TGG - chr7_4:19312112-19312131 Msa1143600:intron 50.0%
!!! AACATTGGTGCGTGCCGTTT+TGG - chr7_4:19312281-19312300 Msa1143600:intron 50.0%
TAATCAGCTGACAGCCTGGA+TGG + chr7_4:19312347-19312366 None:intergenic 50.0%
!! GGCACTTTGAAATGCCTTCC+TGG + chr7_4:19312553-19312572 None:intergenic 50.0%
CGAACCCTTCACAGCACATA+TGG + chr7_4:19312701-19312720 None:intergenic 50.0%
GGCTTACCGACCCTTGATAA+TGG + chr7_4:19312799-19312818 None:intergenic 50.0%
AGAGAGGGGTGAAGAGAGGA+GGG + chr7_4:19307718-19307737 None:intergenic 55.0%
AGAGAGAGAGGGGTGAAGAG+AGG + chr7_4:19307722-19307741 None:intergenic 55.0%
!! GAACCCACTTGGGTTGGCTT+GGG + chr7_4:19308527-19308546 None:intergenic 55.0%
TGACAGGAACCCACTTGGGT+TGG + chr7_4:19308533-19308552 None:intergenic 55.0%
CAAACGGCCGCACATAGAGA+TGG + chr7_4:19308962-19308981 None:intergenic 55.0%
CATCTCTATGTGCGGCCGTT+TGG - chr7_4:19308960-19308979 Msa1143600:intron 55.0%
!!! TGCGGCCGTTTGGCTTTTCA+CGG - chr7_4:19308970-19308989 Msa1143600:intron 55.0%
ACTGCAGCAGGAAGGACTAG+GGG + chr7_4:19311155-19311174 None:intergenic 55.0%
GAACTGCAGCAGGAAGGACT+AGG + chr7_4:19311157-19311176 None:intergenic 55.0%
GGATCTATGTTACGCGGAGG+TGG - chr7_4:19311256-19311275 Msa1143600:CDS 55.0%
GTTGTGACTTCGCATGGTGC+TGG - chr7_4:19311416-19311435 Msa1143600:CDS 55.0%
! TGTGACTTCGCATGGTGCTG+GGG - chr7_4:19311418-19311437 Msa1143600:CDS 55.0%
AAGCAAAGGACACGCGGAAG+GGG + chr7_4:19312638-19312657 None:intergenic 55.0%
CAAGCAAAGGACACGCGGAA+GGG + chr7_4:19312639-19312658 None:intergenic 55.0%
ACAAGCAAAGGACACGCGGA+AGG + chr7_4:19312640-19312659 None:intergenic 55.0%
GGGTGAAGAGAGGAGGGAGA+AGG + chr7_4:19307712-19307731 None:intergenic 60.0%
GAGAGAGGGGTGAAGAGAGG+AGG + chr7_4:19307719-19307738 None:intergenic 60.0%
!! CTTGGGTTGGCTTGGGACCT+TGG + chr7_4:19308520-19308539 None:intergenic 60.0%
AGGTCCCAAGCCAACCCAAG+TGG - chr7_4:19308520-19308539 Msa1143600:intron 60.0%
GGTCCCAAGCCAACCCAAGT+GGG - chr7_4:19308521-19308540 Msa1143600:intron 60.0%
!! GGAACCCACTTGGGTTGGCT+TGG + chr7_4:19308528-19308547 None:intergenic 60.0%
!!! GCGGCCGTTTGGCTTTTCAC+GGG - chr7_4:19308971-19308990 Msa1143600:intron 60.0%
GTTCCATTGCCCACCGAGTC+TGG - chr7_4:19309598-19309617 Msa1143600:CDS 60.0%
! ATTGGTGGGCCAGACTCGGT+GGG + chr7_4:19309610-19309629 None:intergenic 60.0%
CGAACTATTTGCCCCCCTGC+TGG + chr7_4:19309908-19309927 None:intergenic 60.0%
AGGCAGGTCATGCCCTGTGA+AGG - chr7_4:19309966-19309985 Msa1143600:intron 60.0%
AGCAAAGGACACGCGGAAGG+GGG + chr7_4:19312637-19312656 None:intergenic 60.0%
! CATTGGTGGGCCAGACTCGG+TGG + chr7_4:19309611-19309630 None:intergenic 65.0%
GCTGGGGCAGCATGCAGACA+AGG - chr7_4:19311434-19311453 Msa1143600:intron 65.0%
GATGATGAGGGCCAGGGTGC+AGG + chr7_4:19312071-19312090 None:intergenic 65.0%
GCAAAGGACACGCGGAAGGG+GGG + chr7_4:19312636-19312655 None:intergenic 65.0%
!! GGGCCAGACTCGGTGGGCAA+TGG + chr7_4:19309604-19309623 None:intergenic 70.0%
GACACGCGGAAGGGGGGCAA+AGG + chr7_4:19312630-19312649 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 19307708 19313147 19307708 ID=Msa1143600;Name=Msa1143600
chr7_4 mRNA 19307708 19313147 19307708 ID=Msa1143600-mRNA-1;Parent=Msa1143600;Name=Msa1143600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=284|0.85|0.87|1|0.71|0.5|8|584|481
chr7_4 exon 19307708 19308015 19307708 ID=Msa1143600-mRNA-1:exon:4326;Parent=Msa1143600-mRNA-1
chr7_4 exon 19308044 19308396 19308044 ID=Msa1143600-mRNA-1:exon:4325;Parent=Msa1143600-mRNA-1
chr7_4 exon 19308568 19308615 19308568 ID=Msa1143600-mRNA-1:exon:4324;Parent=Msa1143600-mRNA-1
chr7_4 exon 19308733 19308879 19308733 ID=Msa1143600-mRNA-1:exon:4323;Parent=Msa1143600-mRNA-1
chr7_4 exon 19309518 19309781 19309518 ID=Msa1143600-mRNA-1:exon:4322;Parent=Msa1143600-mRNA-1
chr7_4 exon 19310567 19311442 19310567 ID=Msa1143600-mRNA-1:exon:4321;Parent=Msa1143600-mRNA-1
chr7_4 exon 19311773 19311930 19311773 ID=Msa1143600-mRNA-1:exon:4320;Parent=Msa1143600-mRNA-1
chr7_4 exon 19312988 19313147 19312988 ID=Msa1143600-mRNA-1:exon:4319;Parent=Msa1143600-mRNA-1
chr7_4 five_prime_UTR 19312988 19313147 19312988 ID=Msa1143600-mRNA-1:five_prime_utr;Parent=Msa1143600-mRNA-1
chr7_4 five_prime_UTR 19311807 19311930 19311807 ID=Msa1143600-mRNA-1:five_prime_utr;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19311773 19311806 19311773 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19310567 19311442 19310567 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19309518 19309781 19309518 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19308733 19308879 19308733 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19308568 19308615 19308568 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 CDS 19308320 19308396 19308320 ID=Msa1143600-mRNA-1:cds;Parent=Msa1143600-mRNA-1
chr7_4 three_prime_UTR 19308044 19308319 19308044 ID=Msa1143600-mRNA-1:three_prime_utr;Parent=Msa1143600-mRNA-1
chr7_4 three_prime_UTR 19307708 19308015 19307708 ID=Msa1143600-mRNA-1:three_prime_utr;Parent=Msa1143600-mRNA-1
Gene Sequence

>Msa1143600

ATGGGCCGTTATCAGGATGCTAATTATTATAGAGGTTCTTTGTGCTGTCGGTTAATTTTATTTGTCATCTGGCTTCCTAATTTCCTAGATGTGACAGCACAAGAAGTACACGCTGACCATAAGCGAACTACTTCTCTGGTAGTGTTAGCTAGTGAACCTACTTCTGGAGACACTGGACTCTTTGAACCTATAGAAATATCACCTGCTGTCATACCTAAAGTTCCATTGCCCACCGAGTCTGGCCCACCAATGTATCCTATTCCTAGTTTTCCTTCCAGATATGAACCAGTTTTAACTGGTAAATGCCCTGTAAACTTTTCACTACCAGAAATATCAGATATCCTCGATAGAACAGCATTTGATTGCGCTGTACCTTTGGCATCCCTTGTAGGGAATGTAATATGTTGTCCACAGTTTAGTAGCTTAATCCACATTGTCCAGGGTTTCTTTAGCAAGAAATCTAAAAATCTGGTTTTACCAAATACAGTCGCCGAACATTGTTTTTCTGATGTTATTAGTATTCTAGCCAGCAGGGGGGCAAATAGTTCGCTCTCCACACTTTGTTCCATTAAATCATCTAACTTTACAGGCAGGTCATGCCCTGTGAAGGATGATGCTACTTTTGAAAGAACGGTTAACACAAGCAAATTAGTTGAGGCCTGCAGAACTGTTGATCCACTAAAAGAGTGCTGCAGACCTGTTTGTCAGCCTGCAATTATGGATGCCACACTTCAGATTTCTGGCAGACAAATGATGATCAATAATGATGACCATATGGCTGGGGAAATGAATCACACTGATTATCTAAATGATTGTAAAGGCGTAGTTTATTCATATCTCTCTAAACAATTATCAATTGAGGCTGCCAATAAAGCATTCCGGATACTATCTGCCTGCAAAGTCAACAAAGTAAATCTTGCTTTTGCAGTTTGTCCTTTGACTTTTACGGAGCCTACAGATGTAATTGCTGTATGTCAGAATGTAGCTGCCCCTAGTCCTTCCTGCTGCAGTTCATTAAACACATATATTGCAGGGATACAAAAACAAATGTTAGTTACCAATAAACAAGCTATAATATGTGCAACACAATTTGGATCTATGTTACGCGGAGGTGGGGTGATGACAAATGTCTATGAGCTTTGTGATGTTGATTTGAAAGATTTCAGCATACAAGATGTAGGATGTCTACTTCGAAGCTTGCCTGGAGATGTGATATTTGACAATTCAACAGGCGTTAGTTTTACATGTGATTTAAATGACAATATTCCTGCACCCTGGCCCTCATCATCTTCATTTACATCTCTATCACTCTGTGCACCTGAGATGTCATTACCAGCATTACCAATTTCACAGTCATTGAAAAACATTGGTTGTAATTCTGCTGGAGTGGGATTGCTTGCAATTATATTTTCATTTTTCATCAGTACGGTTGTACTGAGATTTTAG
Protein sequence

>Msa1143600

MGRYQDANYYRGSLCCRLILFVIWLPNFLDVTAQEVHADHKRTTSLVVLASEPTSGDTGLFEPIEISPAVIPKVPLPTESGPPMYPIPSFPSRYEPVLTGKCPVNFSLPEISDILDRTAFDCAVPLASLVGNVICCPQFSSLIHIVQGFFSKKSKNLVLPNTVAEHCFSDVISILASRGANSSLSTLCSIKSSNFTGRSCPVKDDATFERTVNTSKLVEACRTVDPLKECCRPVCQPAIMDATLQISGRQMMINNDDHMAGEMNHTDYLNDCKGVVYSYLSKQLSIEAANKAFRILSACKVNKVNLAFAVCPLTFTEPTDVIAVCQNVAAPSPSCCSSLNTYIAGIQKQMLVTNKQAIICATQFGSMLRGGGVMTNVYELCDVDLKDFSIQDVGCLLRSLPGDVIFDNSTGVSFTCDLNDNIPAPWPSSSSFTSLSLCAPEMSLPALPISQSLKNIGCNSAGVGLLAIIFSFFISTVVLRF*